BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00011951
         (1339 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   511   e-142
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   503   e-139
ref|XP_010913927.1| PREDICTED: RNA polymerase sigma factor sigE,...   497   e-138
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   495   e-137
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   494   e-137
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   491   e-136
ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,...   490   e-135
gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium r...   490   e-135
ref|XP_009410848.1| PREDICTED: RNA polymerase sigma factor sigE,...   489   e-135
gb|AKC88745.1| sigma factor [Melianthus villosus]                     489   e-135
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   489   e-135
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   487   e-135
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   487   e-135
ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,...   486   e-134
ref|XP_010523561.1| PREDICTED: RNA polymerase sigma factor sigE,...   486   e-134
ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,...   486   e-134
ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,...   485   e-134
ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,...   485   e-134
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   484   e-134
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     483   e-133

>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  511 bits (1317), Expect = e-142
 Identities = 269/371 (72%), Positives = 302/371 (81%), Gaps = 1/371 (0%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDG-EASYNVDRLVNGYSIATD 1143
            NV+RNH            IALR+K   KEE    +S  K+G +   +VD+LV  YS++TD
Sbjct: 147  NVIRNHNKNKRLSLDRR-IALRRK---KEEGAVQLSGVKEGSKEDGDVDKLVGEYSVSTD 202

Query: 1142 LVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTS 963
            L SLDWKKMKIPPVL SSEH+ LFKLMQPM AL Q+KE LH DLGREP+D ELAD+TN S
Sbjct: 203  LASLDWKKMKIPPVLPSSEHAWLFKLMQPMNALFQMKENLHRDLGREPTDGELADSTNMS 262

Query: 962  VLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDR 783
            V Q+RR IEVG AARN+LIKHNLRLVLFVINKY+QE A+G KFQDLCQAG KGLI +IDR
Sbjct: 263  VFQVRRCIEVGRAARNRLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDR 322

Query: 782  FELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPT 603
            FE KR  RLSTY LFWIRH IMRS+T SSFTRV FGLESVR+EIQ+AKLEL+F+L R PT
Sbjct: 323  FEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELMFELERLPT 382

Query: 602  EDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXX 423
            E+EI+ KVGISP RYH+V++ASK V SLH+RHA+TQEEFINGITDI+GVGGDKRRQPA  
Sbjct: 383  EEEIIKKVGISPERYHEVIKASKPVFSLHSRHAITQEEFINGITDIEGVGGDKRRQPALL 442

Query: 422  XXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKH 243
                      LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKH
Sbjct: 443  RLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH 502

Query: 242  PTRVDYLRHHI 210
            PTRVDYLR +I
Sbjct: 503  PTRVDYLRRYI 513


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  503 bits (1294), Expect = e-139
 Identities = 263/371 (70%), Positives = 301/371 (81%), Gaps = 1/371 (0%)
 Frame = -3

Query: 1316 VVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGE-ASYNVDRLVNGYSIATDL 1140
            VVRN            RIAL+K    +E+P+ SV R+K  E  S  +DRLV  YS +TDL
Sbjct: 148  VVRNQTNRIKRLSLDNRIALKKNR--EEKPVVSVRRKKSSENESEKIDRLVRDYSASTDL 205

Query: 1139 VSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSV 960
            VSLDW+KMKIPPVL S EH+ LFKLMQPMKALLQ KE L +DLGR+P++ ELA+ATN S 
Sbjct: 206  VSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQAKENLQKDLGRDPTEDELAEATNMSA 265

Query: 959  LQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRF 780
             Q+R+++EVG AARNKLIKHNLRLVLF INKY+Q+ A+G +FQDLCQAG KGLI +IDRF
Sbjct: 266  AQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQDFANGPRFQDLCQAGVKGLITAIDRF 325

Query: 779  ELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTE 600
            E +R  RLSTY+LFWIRH I+RS+T SSFTRV FGLESVR+EIQ+AKLELLF+L REPTE
Sbjct: 326  EPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTE 385

Query: 599  DEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXX 420
            +EI+ KVGISP RY +VMRASK V SLH+RH+VTQEEFINGITDIDGVGGD RRQPA   
Sbjct: 386  EEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQEEFINGITDIDGVGGDHRRQPALLR 445

Query: 419  XXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHP 240
                     LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKHP
Sbjct: 446  LALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP 505

Query: 239  TRVDYLRHHIV 207
             RVDYLR ++V
Sbjct: 506  ARVDYLRRYVV 516


>ref|XP_010913927.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Elaeis guineensis]
            gi|743755895|ref|XP_010913935.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Elaeis guineensis] gi|743755897|ref|XP_010913942.1|
            PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Elaeis guineensis]
          Length = 498

 Score =  497 bits (1279), Expect = e-138
 Identities = 257/370 (69%), Positives = 299/370 (80%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGEASYNVDRLVNGYSIATDL 1140
            NVVRN            RIALR++  ++ E + +   R+D +   +V +L+  YS++TDL
Sbjct: 131  NVVRNRKRRVRRLSLEKRIALRRRKDEEVEMVAARDERRDLDE--DVGKLLREYSVSTDL 188

Query: 1139 VSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSV 960
             SLDWKKMKIPPVLSS+EH+ LF+LMQPMKA+ +VK  L++DL REP+DAELA A N +V
Sbjct: 189  ASLDWKKMKIPPVLSSAEHNWLFELMQPMKAIFEVKHNLNKDLNREPTDAELAAAVNMTV 248

Query: 959  LQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRF 780
             Q+RR+IEVG AARNKLIKHNLRLVLFVINKYY EIASGQKFQDLCQAG KGLI +IDRF
Sbjct: 249  PQLRRHIEVGRAARNKLIKHNLRLVLFVINKYYPEIASGQKFQDLCQAGVKGLITAIDRF 308

Query: 779  ELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTE 600
            E KRG RLSTY LFWIRH I+RS+T SSFTRVPFG+ESVR EIQKAKLEL F+LGR P +
Sbjct: 309  EAKRGFRLSTYGLFWIRHSIIRSMTISSFTRVPFGIESVRQEIQKAKLELQFELGRVPKD 368

Query: 599  DEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXX 420
            +EI+ +V ISP RY+DVM+A+K + SLHARHAVTQEEFINGITDIDGVGGDKRRQ A   
Sbjct: 369  EEIIDRVKISPERYYDVMKAAKPIFSLHARHAVTQEEFINGITDIDGVGGDKRRQRALLR 428

Query: 419  XXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHP 240
                     LKPKESLVIRQRYGLDGKGDRTLGEIAGNL+ISREMVRK+E+KA MKLKHP
Sbjct: 429  LALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLSISREMVRKHELKAFMKLKHP 488

Query: 239  TRVDYLRHHI 210
             RVDYLR ++
Sbjct: 489  ARVDYLRRYV 498


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  495 bits (1274), Expect = e-137
 Identities = 262/377 (69%), Positives = 302/377 (80%), Gaps = 2/377 (0%)
 Frame = -3

Query: 1334 EKEMV-NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGE-ASYNVDRLVNG 1161
            EKE+  NVVR H           RIAL K  + +E+ + S+ +++D +    N+D LV  
Sbjct: 143  EKEVSDNVVRIHNKKPKRLSLEKRIALSK--MKQEKAVASIQKKRDSKNEDENIDVLVRE 200

Query: 1160 YSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELA 981
            YS +TDLVSLDWKKMKIPPVL  SEH+ LFKLMQPMK LL+VK+ L +DLGREP+D ELA
Sbjct: 201  YSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELA 260

Query: 980  DATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGL 801
            +A + S +Q+RR++EVG AARNKLIKHNLRLVLFVINKY+QE A+G KFQDLCQAG KGL
Sbjct: 261  EAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGL 320

Query: 800  IISIDRFELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFD 621
            I +IDRFE KR  RLSTY LFWIRH IMRS+T SSFTRV FGLESVR+EIQ+AKLELLF 
Sbjct: 321  ITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELLFK 380

Query: 620  LGREPTEDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKR 441
            L R PTE+EI+ KVGISP RYH+VMRASK VLSLHARHA TQEE+INGITD++GVGGD+ 
Sbjct: 381  LQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRG 440

Query: 440  RQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKA 261
            RQ A            LKPKESLV+RQRYGLDGKGDRTLGEIAGNL+ISREMVRK+EVKA
Sbjct: 441  RQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKA 500

Query: 260  LMKLKHPTRVDYLRHHI 210
            LMKLKHP RVDYLR +I
Sbjct: 501  LMKLKHPARVDYLRQYI 517


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  494 bits (1272), Expect = e-137
 Identities = 248/349 (71%), Positives = 290/349 (83%)
 Frame = -3

Query: 1253 KKNVDKEEPMGSVSRRKDGEASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLL 1074
            KKN +++  +   S++     S  +DRLV  YS +TDLVSLDWKKMKIPPVL S+EH+ L
Sbjct: 168  KKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWL 227

Query: 1073 FKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNL 894
            FKLMQPMKALL+ KE L +DLGR+P++ ELA+ATN+S  Q+RR +EVG AARNKLIKHNL
Sbjct: 228  FKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNL 287

Query: 893  RLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGIMR 714
            RLVLFVINKY+Q+ A+G +FQDLCQAG KGLI +IDRFE +R  RLSTY LFWIRH I+R
Sbjct: 288  RLVLFVINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIR 347

Query: 713  SLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRASK 534
            S+T SSFTRV FGLESVR+EIQ+AKLELLF+L REPT+DE++ +VGISP RY +VMRASK
Sbjct: 348  SMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASK 407

Query: 533  QVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRY 354
             V SLH RH+VTQEEFI+GITD+DGVGGD RRQPA            LKPKESLVIRQRY
Sbjct: 408  PVASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRY 467

Query: 353  GLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            GLDGKGDRTLGEI+GNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 468  GLDGKGDRTLGEISGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  491 bits (1263), Expect = e-136
 Identities = 253/370 (68%), Positives = 287/370 (77%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGEASYNVDRLVNGYSIATDL 1140
            NVV+N            RIAL K    +          K+      +D+LV  YS ATDL
Sbjct: 149  NVVKNRRKKSKRLNLDQRIALLKNKEGELVASSQKRELKEDTEDEKIDKLVREYSGATDL 208

Query: 1139 VSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSV 960
             SLDWKKMKIPPVL SSEH+ LFKLMQPMKA+LQVKE L  DLGREP+DAE A+ATN   
Sbjct: 209  ASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEAAEATNIDA 268

Query: 959  LQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRF 780
             ++R+N+EVG AARNKLIKHNLRLVLFVINKY+Q+ A+G KFQDLCQAG KGLI +IDRF
Sbjct: 269  SELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRF 328

Query: 779  ELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTE 600
            E  R  RLSTY LFWIRH I+RS+TTSSFT+VPFGLES+R+EIQKAKL+LLF+L R PT+
Sbjct: 329  EPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAKLQLLFELQRMPTD 388

Query: 599  DEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXX 420
            +EI+ +V +SP RYH+VM+ SK V SLHARH  TQEE INGITD+DGV GDKRRQPA   
Sbjct: 389  EEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEELINGITDVDGVDGDKRRQPALLR 448

Query: 419  XXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHP 240
                     LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKHP
Sbjct: 449  LALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP 508

Query: 239  TRVDYLRHHI 210
            TRVDYLR +I
Sbjct: 509  TRVDYLRRYI 518


>ref|XP_012440029.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            gi|823214552|ref|XP_012440030.1| PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Gossypium raimondii] gi|763785552|gb|KJB52623.1|
            hypothetical protein B456_008G270500 [Gossypium
            raimondii] gi|763785553|gb|KJB52624.1| hypothetical
            protein B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  490 bits (1261), Expect = e-135
 Identities = 246/349 (70%), Positives = 289/349 (82%)
 Frame = -3

Query: 1253 KKNVDKEEPMGSVSRRKDGEASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLL 1074
            KKN +++  +   S++     S  +DRLV  YS +TDLVSLDWKKMK+PPVL S+EH+ L
Sbjct: 168  KKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWL 227

Query: 1073 FKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNL 894
            FKLMQPMKALL+ KE L +DLGR+P++ ELA+ATN+S  Q+RR +EVG AARNKLIKHNL
Sbjct: 228  FKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNL 287

Query: 893  RLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGIMR 714
            RLVLFVI KY+Q+ A+G +FQDLCQAG KGLI +IDRFE +R  RLSTY LFWIRH I+R
Sbjct: 288  RLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIR 347

Query: 713  SLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRASK 534
            S+T SSFTRV FGLESVR+EIQ+AKLELLF+L REPT+DE++ +VGISP RY +VMRASK
Sbjct: 348  SMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASK 407

Query: 533  QVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRY 354
             V SLH RH+VTQEEFI+GITD+DGVGGD RRQPA            LKPKESLVIRQRY
Sbjct: 408  PVASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRY 467

Query: 353  GLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            GLDGKGDRTLGEIAGNL+ISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 468  GLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>gb|KJB52622.1| hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  490 bits (1261), Expect = e-135
 Identities = 246/349 (70%), Positives = 289/349 (82%)
 Frame = -3

Query: 1253 KKNVDKEEPMGSVSRRKDGEASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLL 1074
            KKN +++  +   S++     S  +DRLV  YS +TDLVSLDWKKMK+PPVL S+EH+ L
Sbjct: 199  KKNREEKSVVSGQSKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWL 258

Query: 1073 FKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNL 894
            FKLMQPMKALL+ KE L +DLGR+P++ ELA+ATN+S  Q+RR +EVG AARNKLIKHNL
Sbjct: 259  FKLMQPMKALLEAKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNL 318

Query: 893  RLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGIMR 714
            RLVLFVI KY+Q+ A+G +FQDLCQAG KGLI +IDRFE +R  RLSTY LFWIRH I+R
Sbjct: 319  RLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIR 378

Query: 713  SLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRASK 534
            S+T SSFTRV FGLESVR+EIQ+AKLELLF+L REPT+DE++ +VGISP RY +VMRASK
Sbjct: 379  SMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASK 438

Query: 533  QVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRY 354
             V SLH RH+VTQEEFI+GITD+DGVGGD RRQPA            LKPKESLVIRQRY
Sbjct: 439  PVASLHLRHSVTQEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRY 498

Query: 353  GLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            GLDGKGDRTLGEIAGNL+ISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 499  GLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 547


>ref|XP_009410848.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Musa acuminata subsp.
            malaccensis]
          Length = 505

 Score =  489 bits (1259), Expect = e-135
 Identities = 260/371 (70%), Positives = 304/371 (81%), Gaps = 1/371 (0%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDG-EASYNVDRLVNGYSIATD 1143
            NVVRN            RI++R++    +E  G+ +RR +G E   +V+ LV  YS +T+
Sbjct: 139  NVVRNRKKRVKRLGLEERISMRRR---PKEEAGTEARRGEGREFDEDVEILVREYSGSTN 195

Query: 1142 LVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTS 963
            L SLDWK+MKIPPVLSS+EH+ LFKLMQPMKA+LQVKE +++DL REP+D ELADA N S
Sbjct: 196  LDSLDWKRMKIPPVLSSAEHTWLFKLMQPMKAILQVKEGMYKDLNREPTDGELADAVNMS 255

Query: 962  VLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDR 783
            V Q+RR+IEV  AAR+KLIKHNLRLVLFVINKYY EIASGQKFQ+ CQAGAKGLI +IDR
Sbjct: 256  VPQLRRHIEVARAARDKLIKHNLRLVLFVINKYYPEIASGQKFQEFCQAGAKGLITAIDR 315

Query: 782  FELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPT 603
            FE KRG RLSTY+LFWIRH I+RS+T SSFT+VPFG+ESVR EI+KAKLEL F+LGR PT
Sbjct: 316  FEPKRGFRLSTYSLFWIRHSIIRSMTLSSFTKVPFGIESVRQEIKKAKLELSFELGRLPT 375

Query: 602  EDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXX 423
            E+EIV +VGIS  RY++VM+ASK VLSL+ARH VTQEEFINGITDID VGGDKRRQPA  
Sbjct: 376  EEEIVDRVGISLERYNEVMKASKPVLSLNARHVVTQEEFINGITDID-VGGDKRRQPAVL 434

Query: 422  XXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKH 243
                      L+PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+E+KAL+KLKH
Sbjct: 435  RLALDDVLDSLRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHELKALLKLKH 494

Query: 242  PTRVDYLRHHI 210
            PTRVDYLR ++
Sbjct: 495  PTRVDYLRRYV 505


>gb|AKC88745.1| sigma factor [Melianthus villosus]
          Length = 513

 Score =  489 bits (1258), Expect = e-135
 Identities = 258/374 (68%), Positives = 293/374 (78%), Gaps = 3/374 (0%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGE---ASYNVDRLVNGYSIA 1149
            NVVRN            R+AL +   D +     VSRR+  +    SYN++ LV  YS +
Sbjct: 145  NVVRNQTKKVKRLSLDKRVALIRHKEDVD-----VSRRRKTDHKNKSYNIEILVREYSSS 199

Query: 1148 TDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATN 969
            TD+ SLDWKKMKIPPVLSSSEHS LFKLMQPMK LL  KE L  DLGREP+D ELADATN
Sbjct: 200  TDMASLDWKKMKIPPVLSSSEHSWLFKLMQPMKGLLNFKENLKTDLGREPTDYELADATN 259

Query: 968  TSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISI 789
             +V+++++ +EVG AARNKLIKHNLRLVLFVINKY+Q+ A+G +FQDLCQAG KGLI +I
Sbjct: 260  MNVVKLKKEMEVGRAARNKLIKHNLRLVLFVINKYFQDFANGSRFQDLCQAGVKGLITAI 319

Query: 788  DRFELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGRE 609
            DRFE KR  RLSTY LFWIRH I RS+T SSFTRV FGLESVR EIQKAK ELLF L R 
Sbjct: 320  DRFEPKRKFRLSTYGLFWIRHAITRSMTLSSFTRVSFGLESVRAEIQKAKFELLFRLQRL 379

Query: 608  PTEDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPA 429
            PTE+EI+ KVG+SP RYH+V+RASK VLSLHA+H +TQEEFIN ITD+DGVG D+RRQPA
Sbjct: 380  PTEEEIIEKVGVSPERYHEVLRASKPVLSLHAKHMITQEEFINVITDVDGVGADQRRQPA 439

Query: 428  XXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKL 249
                        LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKL
Sbjct: 440  LLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKL 499

Query: 248  KHPTRVDYLRHHIV 207
            KHP RVDYLR ++V
Sbjct: 500  KHPARVDYLRPYLV 513


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  489 bits (1258), Expect = e-135
 Identities = 252/350 (72%), Positives = 288/350 (82%), Gaps = 1/350 (0%)
 Frame = -3

Query: 1253 KKNVDKEEPMGSVSRRKDGEASYNV-DRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSL 1077
            K N D++     V +RKD  +   + + LV  YS +TDLVSLDWKKM+IPPVLSSSEH+ 
Sbjct: 171  KWNKDEKVAASVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTW 230

Query: 1076 LFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHN 897
            LFKLMQPMK LL+VKE L +DLGREP+  ELA+ATN +V+Q++R++EVG AARNKLIKHN
Sbjct: 231  LFKLMQPMKGLLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHN 290

Query: 896  LRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGIM 717
            LRLVLFVINKY+Q+ A+G KFQDLCQAG KGLI +IDRFE +R  RLSTY LFWIRH I+
Sbjct: 291  LRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAII 350

Query: 716  RSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRAS 537
            RS+T SSFTRV FGLESVR EIQKAKLE+L  L R PTEDEI+ KVGISP RYH+VMRAS
Sbjct: 351  RSMTLSSFTRVSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRAS 410

Query: 536  KQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQR 357
            K V SL++RH+VTQEEFINGITD+DGV GD RR+PA            LKPKESLVIRQR
Sbjct: 411  KPVFSLNSRHSVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQR 470

Query: 356  YGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            YGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +IV
Sbjct: 471  YGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 520


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  487 bits (1254), Expect = e-135
 Identities = 251/370 (67%), Positives = 288/370 (77%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGEASYNVDRLVNGYSIATDL 1140
            NVV+N            RIAL K    +          K+      +D+LV  YS ATDL
Sbjct: 149  NVVKNRRKKSKRLNLDQRIALLKNKEGELVASSQKRELKEDTEDEKIDKLVREYSGATDL 208

Query: 1139 VSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSV 960
             SLDWKKMKIPPVL SSEH+ LFKLMQPMKA+LQVKE L  DLGREP+DAE+A+ATN   
Sbjct: 209  ASLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREPTDAEVAEATNIDA 268

Query: 959  LQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRF 780
             ++R+N+EVG AARNKLIKHNLRLVLFVINKY+Q+ A+G KFQDLCQAG KGLI +IDRF
Sbjct: 269  SELRKNLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRF 328

Query: 779  ELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTE 600
            E  R  RLSTY LFWIRH I+RS+TTSSFT+VPFGLES+R+EIQKAKL+LLF+L R PT+
Sbjct: 329  EPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAKLQLLFELQRMPTD 388

Query: 599  DEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXX 420
            +EI+ +V +SP RYH+VM+ SK V SLHARH  TQEEFINGITD+DGV G KR+QPA   
Sbjct: 389  EEIIERVRLSPERYHEVMKVSKPVFSLHARHMTTQEEFINGITDVDGVDGVKRKQPALLR 448

Query: 419  XXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHP 240
                     LKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREMVRK+EVKALMKLKHP
Sbjct: 449  LALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHP 508

Query: 239  TRVDYLRHHI 210
            TRVDYLR +I
Sbjct: 509  TRVDYLRRYI 518


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  487 bits (1254), Expect = e-135
 Identities = 256/372 (68%), Positives = 297/372 (79%), Gaps = 2/372 (0%)
 Frame = -3

Query: 1316 VVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGEASYN--VDRLVNGYSIATD 1143
            VVRN            R+AL K N D E+ + S+ R++    + N  ++ LV  YS +TD
Sbjct: 150  VVRNRTKKAKRLSLNKRVAL-KWNKD-EKVISSIVRKRKSRKNENEKIEELVREYSTSTD 207

Query: 1142 LVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTS 963
            LVSLDWKKMKIPPVL+SSEH+ LFKLMQPMK LL+VKE L +DLGREP++ ELA+ATN S
Sbjct: 208  LVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPTNGELAEATNMS 267

Query: 962  VLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDR 783
            V+Q+++++EVG AAR+KLIKHNLRLVLFV+NKY+Q+ A+G KFQDLCQAG KGLI +IDR
Sbjct: 268  VVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAIDR 327

Query: 782  FELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPT 603
            FE KR  RLSTY LFWIRH I+RS+T SSFTRV FGLESVR EIQKAKL +LF L R PT
Sbjct: 328  FEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLGMLFALKRMPT 387

Query: 602  EDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXX 423
            EDEI+ KVGISP RYH+VMRASK V SLH+RH  TQEEFINGITD+DGV GD R++PA  
Sbjct: 388  EDEIIEKVGISPERYHEVMRASKPVFSLHSRHTTTQEEFINGITDVDGVEGDNRQKPALL 447

Query: 422  XXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKH 243
                      LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKH
Sbjct: 448  RLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH 507

Query: 242  PTRVDYLRHHIV 207
            P RVDYLR ++V
Sbjct: 508  PARVDYLRRYVV 519


>ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Sesamum indicum]
          Length = 518

 Score =  486 bits (1252), Expect = e-134
 Identities = 253/377 (67%), Positives = 298/377 (79%), Gaps = 1/377 (0%)
 Frame = -3

Query: 1337 KEKEMVNVVRNHXXXXXXXXXXXRIALR-KKNVDKEEPMGSVSRRKDGEASYNVDRLVNG 1161
            ++K   +VVR+            RIAL+  K VD         +++  +    +DRLV  
Sbjct: 140  EKKTADDVVRSKRKKERRLTLEKRIALKTNKEVDFLASSSQKRKQRKNDEDEKIDRLVRD 199

Query: 1160 YSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELA 981
            YS +TDLVSLDWKKMKIPPVL SSEH+ LFKLMQPMKA+LQVKE L  DLGRE +D ELA
Sbjct: 200  YSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAILQVKENLQNDLGREVTDDELA 259

Query: 980  DATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGL 801
            +AT T+ +Q+R+ +EVG AARNKLIKHNLRLVLFV+NKY+Q+ ++G +FQDLCQAG KGL
Sbjct: 260  EATKTNAVQLRKQLEVGRAARNKLIKHNLRLVLFVMNKYFQDFSNGPRFQDLCQAGVKGL 319

Query: 800  IISIDRFELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFD 621
            I +IDRFE KR  RLSTY+LFWIRH I+RS+T SSFT+V FGLESVR+EIQKAKLELLF+
Sbjct: 320  ITAIDRFEPKRKFRLSTYSLFWIRHAIIRSMTLSSFTKVSFGLESVRVEIQKAKLELLFE 379

Query: 620  LGREPTEDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKR 441
            L R P+++EIV++VGISP RYH+VMR SK + SLHARHAVTQEEFINGI+D+D V GDKR
Sbjct: 380  LQRLPSDEEIVNRVGISPERYHEVMRVSKPISSLHARHAVTQEEFINGISDVDDVEGDKR 439

Query: 440  RQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKA 261
            RQPA            LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKA
Sbjct: 440  RQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKA 499

Query: 260  LMKLKHPTRVDYLRHHI 210
            LMKLKHP R+DYLR +I
Sbjct: 500  LMKLKHPARIDYLRRYI 516


>ref|XP_010523561.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Tarenaya hassleriana]
          Length = 504

 Score =  486 bits (1250), Expect = e-134
 Identities = 250/351 (71%), Positives = 288/351 (82%), Gaps = 2/351 (0%)
 Frame = -3

Query: 1253 KKNVDKEEPMGSVSRR--KDGEASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHS 1080
            K+N  ++  + SV ++  K  +    +DRLV  YS +TD+VSLDWKKMKIPPVLSS EHS
Sbjct: 154  KRNNQEKSAVASVQKKTVKRLQEDEKMDRLVRDYSASTDIVSLDWKKMKIPPVLSSIEHS 213

Query: 1079 LLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKH 900
             LFKLMQPMKALLQVK+ L ++LGREP+DAE+AD  N SV + +R IE+G AARNKLIKH
Sbjct: 214  WLFKLMQPMKALLQVKDELQKNLGREPTDAEVADGANMSVAEAKRRIEIGRAARNKLIKH 273

Query: 899  NLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGI 720
            NLRLVLFV+NKY+Q+ A+G KFQDLCQAG KGLI +IDRFE  R  RLSTY LFWIRH I
Sbjct: 274  NLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAI 333

Query: 719  MRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRA 540
            +RS+TTSSFTRVPFGLESVR+EIQ+AKLELLF+LGR PT  EIV ++GISP RY +V+ A
Sbjct: 334  IRSMTTSSFTRVPFGLESVRVEIQRAKLELLFELGRVPTGSEIVERLGISPERYREVVIA 393

Query: 539  SKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQ 360
            +K VLSL++RHAVTQEEFI+GITD DGVG D RRQPA            LKPKESLVIRQ
Sbjct: 394  AKPVLSLNSRHAVTQEEFIDGITDFDGVGSDNRRQPALLRLALDDVLDSLKPKESLVIRQ 453

Query: 359  RYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            RYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +IV
Sbjct: 454  RYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 504


>ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Prunus mume]
          Length = 507

 Score =  486 bits (1250), Expect = e-134
 Identities = 255/372 (68%), Positives = 296/372 (79%), Gaps = 2/372 (0%)
 Frame = -3

Query: 1316 VVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGEASYN--VDRLVNGYSIATD 1143
            VVRN            R+ L K N D E+ + S+ R++    + N  ++ LV  YS +TD
Sbjct: 138  VVRNRTKKAKRLSLDKRVTL-KWNKD-EKVIASIVRKRKSRKNENEKIEELVREYSASTD 195

Query: 1142 LVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNTS 963
            LVSLDWKKMKIPPVL+SSEH+ LFKLMQPMK LL+VKE L +DLGREP++ ELA+ATN S
Sbjct: 196  LVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQKDLGREPTNGELAEATNMS 255

Query: 962  VLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISIDR 783
            V+Q+++++EVG AAR+KLIKHNLRLVLFV+NKY+Q+ A+G KFQDLCQAG KGLI +IDR
Sbjct: 256  VVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAIDR 315

Query: 782  FELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREPT 603
            FE KR  RLSTY LFWIRH I+RS+T SSFTRV FGLESVR EIQKAKL +LF L R PT
Sbjct: 316  FEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLGMLFALKRMPT 375

Query: 602  EDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAXX 423
            EDEI+ KVGISP RYH+VMRASK V SLH+RH  TQEEFINGITD+DGV GD R++PA  
Sbjct: 376  EDEIIEKVGISPERYHEVMRASKPVFSLHSRHTTTQEEFINGITDVDGVEGDNRQKPALL 435

Query: 422  XXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKH 243
                      LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLKH
Sbjct: 436  RLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKH 495

Query: 242  PTRVDYLRHHIV 207
            P RVDYLR ++V
Sbjct: 496  PARVDYLRRYVV 507


>ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  485 bits (1248), Expect = e-134
 Identities = 246/344 (71%), Positives = 286/344 (83%), Gaps = 1/344 (0%)
 Frame = -3

Query: 1235 EEPMGSVSRRKDGE-ASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQ 1059
            E+ + SV +RKD +  +  ++ LV  YS +TDLVSLDWKKMKIPPVL+SSEH+ LFKLMQ
Sbjct: 176  EKVVSSVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQ 235

Query: 1058 PMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLF 879
            PMK L +V+E L +DLG EP++ ELA+ATN SV+Q++++ EVG AARNKLIKHNLRLVLF
Sbjct: 236  PMKGLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLF 295

Query: 878  VINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGIMRSLTTS 699
            VINKY+Q+ A+G KFQDLCQAG +GLI +IDRFE KR  RLSTY LFWIRH I+RS+T S
Sbjct: 296  VINKYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVS 355

Query: 698  SFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRASKQVLSL 519
            SFTRV FGLESVR EIQKAKLE++F L R PT++EI+ KVGISP RYH+VMRASK V SL
Sbjct: 356  SFTRVSFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSL 415

Query: 518  HARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGK 339
            H+RHA TQEE+INGITD+DGV GD RR+PA            LKPKESLVIRQRYGLDGK
Sbjct: 416  HSRHATTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGK 475

Query: 338  GDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            GDRTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +IV
Sbjct: 476  GDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  485 bits (1248), Expect = e-134
 Identities = 246/344 (71%), Positives = 286/344 (83%), Gaps = 1/344 (0%)
 Frame = -3

Query: 1235 EEPMGSVSRRKDGE-ASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQ 1059
            E+ + SV +RKD +  +  ++ LV  YS +TDLVSLDWKKMKIPPVL+SSEH+ LFKLMQ
Sbjct: 176  EKVVSSVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQ 235

Query: 1058 PMKALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLF 879
            PMK L +V+E L +DLG EP++ ELA+ATN SV+Q++++ EVG AARNKLIKHNLRLVLF
Sbjct: 236  PMKGLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLF 295

Query: 878  VINKYYQEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHGIMRSLTTS 699
            VINKY+Q+ A+G KFQDLCQAG +GLI +IDRFE KR  RLSTY LFWIRH I+RS+T S
Sbjct: 296  VINKYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVS 355

Query: 698  SFTRVPFGLESVRLEIQKAKLELLFDLGREPTEDEIVSKVGISPARYHDVMRASKQVLSL 519
            SFTRV FGLESVR EIQKAKLE++F L R PT++EI+ KVGISP RYH+VMRASK V SL
Sbjct: 356  SFTRVSFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSL 415

Query: 518  HARHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGK 339
            H+RHA TQEE+INGITD+DGV GD RR+PA            LKPKESLVIRQRYGLDGK
Sbjct: 416  HSRHATTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGK 475

Query: 338  GDRTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 207
            GDRTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +IV
Sbjct: 476  GDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  484 bits (1246), Expect = e-134
 Identities = 254/379 (67%), Positives = 295/379 (77%), Gaps = 3/379 (0%)
 Frame = -3

Query: 1337 KEKEMVNVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRR---KDGEASYNVDRLV 1167
            K++   NVV+N            RIAL K   +KE  M + S R   K+      +D+LV
Sbjct: 140  KKEVADNVVKNRRKTSKRLNLDQRIALLK---NKEGEMVASSERRKLKEDTEDEKIDKLV 196

Query: 1166 NGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAE 987
              YS ATDL SLDWKKMKIPPVL SSEH  LFKLMQPMKA+LQVKE L  DLGREP+D E
Sbjct: 197  REYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENLQNDLGREPTDGE 256

Query: 986  LADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAK 807
            +A+ATN    ++R+ +EVG AARNKLIKHNLRLVLFV+NKY+Q+ A+G +FQDLCQAG K
Sbjct: 257  VAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGSRFQDLCQAGVK 316

Query: 806  GLIISIDRFELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELL 627
            GLI +IDRFE  R  RLSTY LFWIRH I+RS+TTSSFT+VPFGLES+R+EIQKAKLELL
Sbjct: 317  GLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAKLELL 376

Query: 626  FDLGREPTEDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGD 447
            F+L R PT++EI+ +VG+SP RYH+VM+ SK V SLHAR+  TQEE INGITD+DGV GD
Sbjct: 377  FELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTTQEELINGITDVDGVDGD 436

Query: 446  KRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEV 267
            KR+QPA            LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EV
Sbjct: 437  KRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEV 496

Query: 266  KALMKLKHPTRVDYLRHHI 210
            KALMKLKHPTRVDY+R +I
Sbjct: 497  KALMKLKHPTRVDYVRRYI 515


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  483 bits (1244), Expect = e-133
 Identities = 255/373 (68%), Positives = 296/373 (79%), Gaps = 2/373 (0%)
 Frame = -3

Query: 1319 NVVRNHXXXXXXXXXXXRIALRKKNVDKEEPMGSVSRRKDGEAS--YNVDRLVNGYSIAT 1146
            NVVRN            RI+L +   +KE    S SR K  + +  Y+VD LV  YS +T
Sbjct: 144  NVVRNRTKKVKRLSLDRRISLIR---NKEGDADSSSRSKIDQKNENYSVDWLVREYSAST 200

Query: 1145 DLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQVKEALHEDLGREPSDAELADATNT 966
            DLVSLDWKKMKIPPVLSS EH+ LFKLMQPMK LLQ+KE LH+D  REP+D ELA+A N 
Sbjct: 201  DLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKELLQLKENLHKDFSREPTDYELAEALNM 260

Query: 965  SVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYQEIASGQKFQDLCQAGAKGLIISID 786
            +V++MR++++VG AARNKLIKHNLRLVLFV+NKY+Q+ A+G +FQDLCQAG KGLI +ID
Sbjct: 261  NVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNKYFQDFANGPRFQDLCQAGVKGLITAID 320

Query: 785  RFELKRGLRLSTYALFWIRHGIMRSLTTSSFTRVPFGLESVRLEIQKAKLELLFDLGREP 606
            RFE KR +RLSTY LFWIRH I RSLT SSFTRV FGLESVR+EIQ+AKLELLF+L R P
Sbjct: 321  RFEPKRRVRLSTYGLFWIRHAITRSLTLSSFTRVSFGLESVRVEIQRAKLELLFELHRLP 380

Query: 605  TEDEIVSKVGISPARYHDVMRASKQVLSLHARHAVTQEEFINGITDIDGVGGDKRRQPAX 426
            TEDEI+ KVGIS  RYH+VMRA+K V SLHA+H +T EEFIN +TD+DG+ GD+RRQPA 
Sbjct: 381  TEDEIIEKVGISFERYHEVMRAAKPVYSLHAKHMITHEEFINALTDVDGIHGDQRRQPAL 440

Query: 425  XXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLK 246
                       LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVKALMKLK
Sbjct: 441  FRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLK 500

Query: 245  HPTRVDYLRHHIV 207
            HP RVDYLR ++V
Sbjct: 501  HPARVDYLRRYLV 513