BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00008480
         (1633 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   534   e-149
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   534   e-149
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   533   e-148
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   511   e-142
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl...   508   e-141
ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chl...   506   e-140
ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chl...   501   e-139
ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chl...   501   e-139
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl...   499   e-138
gb|KHG01344.1| hypothetical protein F383_22314 [Gossypium arboreum]   499   e-138
gb|KCW70505.1| hypothetical protein EUGRSUZ_F03712 [Eucalyptus g...   499   e-138
ref|XP_012444688.1| PREDICTED: RNA pseudouridine synthase 2, chl...   498   e-138
ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chl...   498   e-138
ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chl...   497   e-137
ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl...   496   e-137
ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chl...   496   e-137
ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chl...   495   e-137
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   495   e-137
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   493   e-136
ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chl...   493   e-136

>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  534 bits (1376), Expect = e-149
 Identities = 277/380 (72%), Positives = 306/380 (80%), Gaps = 1/380 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            RGN+AGV L++TV    S KSR+DSWISSRI G+SRAR+QSSI+SGLVSVNGR I KVSH
Sbjct: 62   RGNFAGVCLEDTVEIS-SVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSH 120

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
            V++AGDKV+CTI ELQPLRAEPEDIPLDIVYED  +LVVNKPAHMVVHPAPGNANGTLVN
Sbjct: 121  VIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVN 180

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLP  A  NS + SE +                  E++SN+C  SVRPGIVHRL
Sbjct: 181  GILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRL 240

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAKDEHSHA LSEQFK HTI R+YLSLT GVPS + GRI +PI RD +NRI
Sbjct: 241  DKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRI 300

Query: 530  RMAAV-SDTSKRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RMAAV S  S R ARHAASRYRV+E+LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLG
Sbjct: 301  RMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 360

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGT+NMALSLLR  +              LQRPCLHAFTLGFKHPHT E+MQFSCP
Sbjct: 361  DEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCP 420

Query: 173  PPADFAELLSQLRAISTKKV 114
            PPADF E+LSQLR+I  +KV
Sbjct: 421  PPADFTEVLSQLRSIGIEKV 440


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  534 bits (1375), Expect = e-149
 Identities = 278/386 (72%), Positives = 308/386 (79%), Gaps = 1/386 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            RGN+AGV L++TV    S KSR+DSWISSRI G+SRAR+QSSI+SGLVSVNGR I KVSH
Sbjct: 62   RGNFAGVCLEDTVEIS-SVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSH 120

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
            V++AGDKV+CTI ELQPLRAEPEDIPLDIVYED  +LVVNKPAHMVVHPAPGNANGTLVN
Sbjct: 121  VIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVN 180

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLP  A  NS + SE +                  E++SN+C  SVRPGIVHRL
Sbjct: 181  GILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRL 240

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAKDEHSHA LSEQFK HTI R+YLSLT GVPS + GRI +PI RD +NRI
Sbjct: 241  DKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRI 300

Query: 530  RMAAV-SDTSKRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RMAAV S  S R ARHAASRYRV+E+LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLG
Sbjct: 301  RMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 360

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGT+NMALSLLR  +              LQRPCLHAFTLGFKHPHT E+MQFSCP
Sbjct: 361  DEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCP 420

Query: 173  PPADFAELLSQLRAISTKKVIYQCAS 96
            PPADF E+LSQLR+I  +K I +  S
Sbjct: 421  PPADFTEVLSQLRSIGIEKNILKIQS 446


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  533 bits (1372), Expect = e-148
 Identities = 276/379 (72%), Positives = 305/379 (80%), Gaps = 1/379 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            RGN+AGV L++TV    S KSR+DSWISSRI G+SRAR+QSSI+SGLVSVNGR I KVSH
Sbjct: 62   RGNFAGVCLEDTVEIS-SVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSH 120

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
            V++AGDKV+CTI ELQPLRAEPEDIPLDIVYED  +LVVNKPAHMVVHPAPGNANGTLVN
Sbjct: 121  VIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVN 180

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLP  A  NS + SE +                  E++SN+C  SVRPGIVHRL
Sbjct: 181  GILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRL 240

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAKDEHSHA LSEQFK HTI R+YLSLT GVPS + GRI +PI RD +NRI
Sbjct: 241  DKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRI 300

Query: 530  RMAAV-SDTSKRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RMAAV S  S R ARHAASRYRV+E+LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLG
Sbjct: 301  RMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 360

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGT+NMALSLLR  +              LQRPCLHAFTLGFKHPHT E+MQFSCP
Sbjct: 361  DEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCP 420

Query: 173  PPADFAELLSQLRAISTKK 117
            PPADF E+LSQLR+I  +K
Sbjct: 421  PPADFTEVLSQLRSIGIEK 439


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  511 bits (1317), Expect = e-142
 Identities = 271/386 (70%), Positives = 302/386 (78%), Gaps = 1/386 (0%)
 Frame = -3

Query: 1268 NHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRT 1089
            N+  P+  NYAGV+L+ETV  K  K  RLD+WISSRI G+SRAR+QSSIRSGLVS+NG+ 
Sbjct: 47   NNREPI-ANYAGVQLEETVDTKAGKL-RLDAWISSRIDGISRARVQSSIRSGLVSINGQV 104

Query: 1088 ISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNA 909
            +SKVSH VK GD V+CTISELQPLRAE EDIPLDIVYED ++LVVNKPAHMVVHPAPGNA
Sbjct: 105  VSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 164

Query: 908  NGTLVNGILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRP 729
             GTLVNGILHHCSLPT A  N + FS+ E                  E SS++   S+RP
Sbjct: 165  TGTLVNGILHHCSLPTLASSNQEAFSDAE------------DISDDEEFSSSISGASIRP 212

Query: 728  GIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISR 549
            GIVHRLDKGTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVPS S GRI +PISR
Sbjct: 213  GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR 272

Query: 548  DSNNRIRMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYL 372
            D NNRIRMAA+  ++K   ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+
Sbjct: 273  DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYM 332

Query: 371  GIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDED 192
            GIPLLGDEVYGGTKNMA SLL+  T              LQRPCLHA  LGF HPHT E 
Sbjct: 333  GIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREK 392

Query: 191  MQFSCPPPADFAELLSQLRAISTKKV 114
            +QFSCPPPADFAE+LSQLR I T+K+
Sbjct: 393  IQFSCPPPADFAEILSQLREIGTEKL 418


>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 449

 Score =  508 bits (1309), Expect = e-141
 Identities = 284/450 (63%), Positives = 316/450 (70%), Gaps = 4/450 (0%)
 Frame = -3

Query: 1466 RERMVLSFLPASSPSATPCTRTXXXXXXXXXXHRNTRCTRVFKLLCXXXXXXXXXXXXTP 1287
            RERMV   LPA+  S+                 R     RV K LC             P
Sbjct: 10   RERMVSLSLPAAGSSSQ--------LSFSLDLLRRDPRDRVSKALCSSTSTSSRDSNPEP 61

Query: 1286 ADRSQPNHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1107
              R Q      + GN+AG+RL+E V    ++K+RLDSWISSRI  VSRARIQSSIRSGLV
Sbjct: 62   FQRQQ----RVITGNHAGLRLEERVEIG-AEKTRLDSWISSRIETVSRARIQSSIRSGLV 116

Query: 1106 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 927
            +VNGRT+ KVSH++K GD V CT+SELQPLRAE EDIPLDIVYEDAH+LVVNKPAHMVVH
Sbjct: 117  TVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVH 176

Query: 926  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSENE---YXXXXXXXXXXXXXXXXXEISS 756
            PAPGNANGTLVN ILHHC LPT A  N    SE+E                      ISS
Sbjct: 177  PAPGNANGTLVNAILHHCRLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISS 236

Query: 755  NVCNDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSY 576
                  VRPGIVHRLDKGTSGLLVVAKDEHSHA L+EQFK HTI RVY+SLT GVP+PS 
Sbjct: 237  ENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSS 296

Query: 575  GRIAIPISRDSNNRIRMAAVSDTS-KRHARHAASRYRVIEILADGGSALLEWRLETGRTH 399
            GRI IPI+RDSNNRIRMAAV  TS  RHAR+AASRY+VIE+L  GGSAL+EWRLETGRTH
Sbjct: 297  GRIEIPIARDSNNRIRMAAVLGTSNSRHARYAASRYKVIELLGRGGSALVEWRLETGRTH 356

Query: 398  QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLG 219
            QIRAHAKY+GIPLLGDEVYGGTK+MALSLLR  T              LQRPCLHA +LG
Sbjct: 357  QIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSSHHGHLSQILSKLQRPCLHASSLG 416

Query: 218  FKHPHTDEDMQFSCPPPADFAELLSQLRAI 129
            FKHPHT E ++FSCPPP DFAE+L QL++I
Sbjct: 417  FKHPHTGEYLRFSCPPPDDFAEVLDQLQSI 446


>ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] gi|302141717|emb|CBI18920.3| unnamed
            protein product [Vitis vinifera]
          Length = 433

 Score =  506 bits (1303), Expect = e-140
 Identities = 268/385 (69%), Positives = 295/385 (76%), Gaps = 7/385 (1%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVV--NKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKV 1077
            R NYAGVRL+ETVV  N  S K RLDSWISSRI G+SRAR+QSSIRSGLVSVN R + KV
Sbjct: 55   RTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKV 114

Query: 1076 SHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTL 897
            SHV++AGDKV+CTISELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA+GTL
Sbjct: 115  SHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTL 174

Query: 896  VNGILHHCSLPTAAFPN----SDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRP 729
            VNGILHHCSLPT A PN     D  S++E+                   +   C  ++RP
Sbjct: 175  VNGILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQ------------NCGTCETNIRP 222

Query: 728  GIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISR 549
            GIVHRLDKGTSGLLVVAKDEHSHA LSEQFK H+I RVY+SLT GVP+P  GR+ IP+ R
Sbjct: 223  GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGR 282

Query: 548  DSNNRIRMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYL 372
            D NNRIRM AV   S    ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKYL
Sbjct: 283  DPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYL 342

Query: 371  GIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDED 192
            GIPLLGDEVYGGTKNMALSLLR   P             L RPCLHA  LGF HP T ++
Sbjct: 343  GIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKN 402

Query: 191  MQFSCPPPADFAELLSQLRAISTKK 117
            + FSC PP DFAE+LS LR IST+K
Sbjct: 403  VHFSCQPPEDFAEILSWLRKISTEK 427


>ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  501 bits (1291), Expect = e-139
 Identities = 258/381 (67%), Positives = 298/381 (78%), Gaps = 1/381 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            R NY+GV+L+ETV +K  K  RLDSW+SSRI GVSRAR+QSSIRSGLVSVNGR   KVSH
Sbjct: 52   RSNYSGVKLEETVDSKTGKL-RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
            +VK GDKVDCTI++L+PLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  MVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLPT +FP  ++ S+ E                  + SS +C  SVRPGIVHRL
Sbjct: 171  GILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRL 230

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAK+EHS A L+EQFK HTI RVY+S+T GVP+   GR+ IPI RDSNNRI
Sbjct: 231  DKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRI 290

Query: 530  RMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RMAA+  T K   +RHA SRY+VIE LA GGSAL+EWRLETGRTHQIRAHAK+LGIPL+G
Sbjct: 291  RMAAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMG 350

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGTKNMALSLL+  TP             + RPCLHA TLGF+HP T E++ F+  
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRL 410

Query: 173  PPADFAELLSQLRAISTKKVI 111
            PP DFAE+LS+LRAI T+KV+
Sbjct: 411  PPPDFAEILSELRAIKTEKVL 431


>ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  501 bits (1290), Expect = e-139
 Identities = 258/382 (67%), Positives = 298/382 (78%), Gaps = 1/382 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            R NY+GV+L+ETV +K  K  RLDSW+SSRI GVSRAR+QSSIRSGLVSVNGR   KVSH
Sbjct: 52   RSNYSGVKLEETVDSKTGKL-RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
            +VK GDKVDCTI++L+PLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  MVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLPT +FP  ++ S+ E                  + SS +C  SVRPGIVHRL
Sbjct: 171  GILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRL 230

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAK+EHS A L+EQFK HTI RVY+S+T GVP+   GR+ IPI RDSNNRI
Sbjct: 231  DKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRI 290

Query: 530  RMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RMAA+  T K   +RHA SRY+VIE LA GGSAL+EWRLETGRTHQIRAHAK+LGIPL+G
Sbjct: 291  RMAAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMG 350

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGTKNMALSLL+  TP             + RPCLHA TLGF+HP T E++ F+  
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRL 410

Query: 173  PPADFAELLSQLRAISTKKVIY 108
            PP DFAE+LS+LRAI T+KV +
Sbjct: 411  PPPDFAEILSELRAIKTEKVTH 432


>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Phoenix dactylifera]
          Length = 439

 Score =  499 bits (1286), Expect = e-138
 Identities = 270/418 (64%), Positives = 307/418 (73%), Gaps = 4/418 (0%)
 Frame = -3

Query: 1367 RNTRCTRVFKLLCXXXXXXXXXXXXTPADRSQPNHNHPVRGNYAGVRLQETVVNKLSKKS 1188
            R  R  RV K LC             P   S       +RGN+AG+RL+E+V    ++K+
Sbjct: 24   RRDRRDRVSKALCSSPTTSSRDSNPEP---SPQRPQRVLRGNHAGLRLEESVEIG-AEKT 79

Query: 1187 RLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVKAGDKVDCTISELQPLRAE 1008
            RLDSWISSRI GVSRARIQSSIRSG V VNGRT+ KVSH++K GD V CT+SELQPLRA+
Sbjct: 80   RLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAK 139

Query: 1007 PEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPTAAFPNSDIFSE 828
             EDIPLDIVYEDA++LVVNKPAHMVVHPAPGN NGTLV+ ILHHC LPT A  ++   SE
Sbjct: 140  AEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHCRLPTIACVSNSKNSE 199

Query: 827  NE---YXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDKGTSGLLVVAKDEHSHA 657
            +E                      +SS      VRPGIVHRLDKGTSGLLVVAKDEHSHA
Sbjct: 200  SEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHA 259

Query: 656  CLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRIRMAAVSDTS-KRHARHAA 480
             L+EQFK HTI RVY+SLT GVP+PS GRI IPI+RDSNNRIRMAAVS TS  RHAR+AA
Sbjct: 260  HLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVSGTSNSRHARYAA 319

Query: 479  SRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRAW 300
            SRY+VI++L  GGS+L+EWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MALSLLR  
Sbjct: 320  SRYKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPR 379

Query: 299  TPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPADFAELLSQLRAIS 126
            T              +QRPCLHA  LGFKHPHT E ++FSCPPP DFAE+L QL++IS
Sbjct: 380  TSSSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQSIS 437


>gb|KHG01344.1| hypothetical protein F383_22314 [Gossypium arboreum]
          Length = 446

 Score =  499 bits (1285), Expect = e-138
 Identities = 258/389 (66%), Positives = 292/389 (75%), Gaps = 1/389 (0%)
 Frame = -3

Query: 1277 SQPNHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVN 1098
            S   H  P R +YAGV+L+ETV      K RLDSWISSRI G+SRAR+QSSI+SGLV VN
Sbjct: 49   SAAKHEEPTRTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVN 108

Query: 1097 GRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAP 918
            GR + KVSH ++AGDKV+C IS+LQPL+AEPEDIPLDIV+ED H+LVVNKP+HMVVHPAP
Sbjct: 109  GRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAP 168

Query: 917  GNANGTLVNGILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDS 738
            GNANGTLVNGILHHCSLPT A    ++  + E                     ++    S
Sbjct: 169  GNANGTLVNGILHHCSLPTVASSEKEVLFDTE---------DMSDDEQDIFHGASAGAAS 219

Query: 737  VRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIP 558
            VRPGIVHRLDKGTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVPS S GR+ IP
Sbjct: 220  VRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSASAGRVDIP 279

Query: 557  ISRDSNNRIRMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHA 381
            I RDSNNRIRM AV   S    ARHAASRY+VIE+LA GGSAL++WRLETGRTHQIRAHA
Sbjct: 280  IGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHA 339

Query: 380  KYLGIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHT 201
            KY+GIPLLGDEVYGGTKNMALSLLR  TP             L+RP LHA  LGF+HPH+
Sbjct: 340  KYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHS 399

Query: 200  DEDMQFSCPPPADFAELLSQLRAISTKKV 114
             E M+FSCPPP DF E+L+ LR I  +KV
Sbjct: 400  GEKMRFSCPPPPDFGEILNHLRKIGIEKV 428


>gb|KCW70505.1| hypothetical protein EUGRSUZ_F03712 [Eucalyptus grandis]
          Length = 462

 Score =  499 bits (1284), Expect = e-138
 Identities = 259/378 (68%), Positives = 293/378 (77%), Gaps = 1/378 (0%)
 Frame = -3

Query: 1241 YAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVK 1062
            YAGVRL+ETV      K RLD+WISSRI GVSRAR+QSSIRSGLVSVNGR + KVSH V+
Sbjct: 67   YAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVR 126

Query: 1061 AGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGIL 882
            AGD VDCTISELQPLRAEPEDIP+DIVYED H+LVVNKPAHMVVHPAPGNA+GTLVN IL
Sbjct: 127  AGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAIL 186

Query: 881  HHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDKG 702
            HHCSLPT AF  +++ SE E                    +S+    SVRPGIVHRLDKG
Sbjct: 187  HHCSLPTVAFSETELLSEGEDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLDKG 246

Query: 701  TSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRIRMA 522
            TSGLLVVAK+E SHA LSEQFK HTI RVY+SLT GVPS + GRI +PI RD+NNRIRM+
Sbjct: 247  TSGLLVVAKNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMS 306

Query: 521  AVSDTSK-RHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEV 345
            A+   S  R AR+AASRY+VIE+LA G SAL+EWRLETGRTHQIRAHAKY+GIPLLGDEV
Sbjct: 307  AIPGPSNGRQARYAASRYKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEV 366

Query: 344  YGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPA 165
            YGGTKNM LSLL+A  P             L+RPCLHA +LGF HP+T E++QFSC PP 
Sbjct: 367  YGGTKNMILSLLQAKLPIGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPE 426

Query: 164  DFAELLSQLRAISTKKVI 111
            DF+E+L QLR +  KKVI
Sbjct: 427  DFSEILCQLRRLGMKKVI 444


>ref|XP_012444688.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Gossypium
            raimondii]
          Length = 432

 Score =  498 bits (1282), Expect = e-138
 Identities = 257/390 (65%), Positives = 293/390 (75%), Gaps = 1/390 (0%)
 Frame = -3

Query: 1277 SQPNHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVN 1098
            S   H  P+R +YAGV+L+ETV      K RLDSWISSRI G+SRAR+QSSI+SGLV VN
Sbjct: 49   SATKHEEPIRTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVN 108

Query: 1097 GRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAP 918
            GR + KVSH ++AGDKVDC IS+LQPL+AEPEDIPLDIV+ED H+LVVNKP+HMVVHPAP
Sbjct: 109  GRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAP 168

Query: 917  GNANGTLVNGILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDS 738
            GNANGTLVNGILHHCSLPT A    ++  + E                     ++    S
Sbjct: 169  GNANGTLVNGILHHCSLPTVASSEKEVLFDTE---------DMSDDEQDIFHGASAGAAS 219

Query: 737  VRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIP 558
            VRPGIVHRLDKGTSGLLVVAKDE+SHA LSEQFK HTI RVY+SLT GVPS + GR+ IP
Sbjct: 220  VRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSAASGRVDIP 279

Query: 557  ISRDSNNRIRMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHA 381
            I RDSNNRIRM AV   S    ARHAASRY+VIE+LA GGSAL++WRLETGRTHQIRAHA
Sbjct: 280  IGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHA 339

Query: 380  KYLGIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHT 201
            KY+GIPLLGDEVYGGTKNMALSLLR  TP             L+RP LHA  LGF+HPH+
Sbjct: 340  KYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHS 399

Query: 200  DEDMQFSCPPPADFAELLSQLRAISTKKVI 111
             E M+FSCPPP DF E+L+ LR I  +K I
Sbjct: 400  GEKMRFSCPPPPDFGEILNHLRKIGIEKPI 429


>ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  498 bits (1282), Expect = e-138
 Identities = 260/381 (68%), Positives = 298/381 (78%), Gaps = 1/381 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            R NY+GV+L+ETV  K  K  RLDSW+SSRI+G+SRAR+QSSIRSGLVSVNGR   KVSH
Sbjct: 52   RSNYSGVKLEETVDVKTGKL-RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
             VK GDKV+CTI++L+PLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  TVKGGDKVNCTIADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLPT +FP  ++ S+ E                    SS VC  SVRPGIVHRL
Sbjct: 171  GILHHCSLPTVSFPGEEVLSDVEDDSDDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRL 230

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAK E S A L+EQFK HTI RVY+S+T GVP+   GRI IPI RDSNNRI
Sbjct: 231  DKGTSGLLVVAKTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRI 290

Query: 530  RMAAVSDTSK-RHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RM A+  + K   AR+AASRY+VIE LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLG
Sbjct: 291  RMIAIPGSHKGGRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLG 350

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGTKNMALSLL+  TP             ++RPCLHA TLGF+HP+T E++ F+  
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRL 410

Query: 173  PPADFAELLSQLRAISTKKVI 111
            PPADFAE+LS+LRAIST+KV+
Sbjct: 411  PPADFAEVLSELRAISTEKVL 431


>ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Tarenaya hassleriana]
          Length = 435

 Score =  497 bits (1279), Expect = e-137
 Identities = 263/386 (68%), Positives = 294/386 (76%), Gaps = 7/386 (1%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            R + AGV+ QETV +  + K RLDSWISSR+HGVSRAR+QSSIR GLV VNGR + KVSH
Sbjct: 65   RASNAGVKFQETV-DVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDKVSH 123

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
             VKAGD V CTISELQPL+AEPED+PLDIVYED H+LVVNKPAHMVVHPAPGN NGTLVN
Sbjct: 124  NVKAGDMVSCTISELQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGTLVN 183

Query: 890  GILHHCSLPTAAF------PNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRP 729
            GILHHCSLP  A+      P+ + FSE+E                   +SS+  + SVRP
Sbjct: 184  GILHHCSLPIVAYSDTEVDPDEEDFSEDE-----------------ETMSSSAYSASVRP 226

Query: 728  GIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISR 549
            GIVHRLDKGTSGLLVVAKDEHSHA L+EQFK HTI RVY+SLT GVPSPS+GRI IPI R
Sbjct: 227  GIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKQHTIERVYVSLTCGVPSPSHGRIVIPIGR 286

Query: 548  DSNNRIRMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYL 372
            D NNRIRMAA+   S R  ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+
Sbjct: 287  DLNNRIRMAAIPGLSNRGRARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYV 346

Query: 371  GIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDED 192
            G+PLLGDEVYG TK+MALSLL+                 L RPCLHA  LGFKHP T ED
Sbjct: 347  GVPLLGDEVYGATKSMALSLLQKRASRNDHGQILELVSRLDRPCLHALVLGFKHPCTGED 406

Query: 191  MQFSCPPPADFAELLSQLRAISTKKV 114
            ++FSCPPP DFAE L  LR + T+KV
Sbjct: 407  VKFSCPPPPDFAETLGMLRKLGTEKV 432


>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Musa
            acuminata subsp. malaccensis]
            gi|695071322|ref|XP_009382728.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Musa acuminata
            subsp. malaccensis]
          Length = 440

 Score =  496 bits (1278), Expect = e-137
 Identities = 258/390 (66%), Positives = 298/390 (76%), Gaps = 4/390 (1%)
 Frame = -3

Query: 1283 DRSQPNHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVS 1104
            D   P     +R N+AGVRL+E V    ++K+R+DSWISSRI GVSRARIQSSIRSGLV+
Sbjct: 46   DPESPPPRGEIRVNHAGVRLEERV-EVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVA 104

Query: 1103 VNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHP 924
            VNGRT++KVSH++K GD V C IS+L PL+AEPED+PLDIVYED H++VVNKPAHMVVHP
Sbjct: 105  VNGRTVNKVSHIIKGGDMVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHP 164

Query: 923  APGNANGTLVNGILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCN 744
            APGNANGTLVN ILHHC LP  AF N+   S+ E                   +      
Sbjct: 165  APGNANGTLVNAILHHCRLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIE 224

Query: 743  DS---VRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYG 573
            +    VRPGIVHRLDKGTSGLLVVAKD+HSHA L+EQFK HTI RVY+SLT GVP+PSYG
Sbjct: 225  NYEALVRPGIVHRLDKGTSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYG 284

Query: 572  RIAIPISRDSNNRIRMAAVSD-TSKRHARHAASRYRVIEILADGGSALLEWRLETGRTHQ 396
            RI IPI+RDSNNRIRM AVS   + RHAR+AASRY+VIE    GG+AL++WRLETGRTHQ
Sbjct: 285  RIEIPIARDSNNRIRMVAVSGLNNSRHARYAASRYKVIEDFMGGGAALVQWRLETGRTHQ 344

Query: 395  IRAHAKYLGIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGF 216
            IRAHAKYLGIPLLGDEVYGGTK+MALSLLR  TP             LQRPCLHAF++GF
Sbjct: 345  IRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRTPPTYHGHLSNIISKLQRPCLHAFSIGF 404

Query: 215  KHPHTDEDMQFSCPPPADFAELLSQLRAIS 126
            KHPHT E +QFSCPPP DF+++L QLR+IS
Sbjct: 405  KHPHTGEFLQFSCPPPDDFSKVLDQLRSIS 434


>ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379712|ref|XP_010063295.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379717|ref|XP_010063296.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379720|ref|XP_010063297.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis]
          Length = 454

 Score =  496 bits (1276), Expect = e-137
 Identities = 257/376 (68%), Positives = 291/376 (77%), Gaps = 1/376 (0%)
 Frame = -3

Query: 1241 YAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVK 1062
            YAGVRL+ETV      K RLD+WISSRI GVSRAR+QSSIRSGLVSVNGR + KVSH V+
Sbjct: 74   YAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVR 133

Query: 1061 AGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGIL 882
            AGD VDCTISELQPLRAEPEDIP+DIVYED H+LVVNKPAHMVVHPAPGNA+GTLVN IL
Sbjct: 134  AGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAIL 193

Query: 881  HHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDKG 702
            HHCSLPT AF  +++ SE E                    +S+    SVRPGIVHRLDKG
Sbjct: 194  HHCSLPTVAFSETELLSEGEDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLDKG 253

Query: 701  TSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRIRMA 522
            TSGLLVVAK+E SHA LSEQFK HTI RVY+SLT GVPS + GRI +PI RD+NNRIRM+
Sbjct: 254  TSGLLVVAKNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMS 313

Query: 521  AVSDTSK-RHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEV 345
            A+   S  R AR+AASRY+VIE+LA G SAL+EWRLETGRTHQIRAHAKY+GIPLLGDEV
Sbjct: 314  AIPGPSNGRQARYAASRYKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEV 373

Query: 344  YGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPA 165
            YGGTKNM LSLL+A  P             L+RPCLHA +LGF HP+T E++QFSC PP 
Sbjct: 374  YGGTKNMILSLLQAKLPIGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPE 433

Query: 164  DFAELLSQLRAISTKK 117
            DF+E+L QLR +  KK
Sbjct: 434  DFSEILCQLRRLGMKK 449


>ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Elaeis guineensis]
          Length = 445

 Score =  495 bits (1275), Expect = e-137
 Identities = 280/450 (62%), Positives = 312/450 (69%), Gaps = 4/450 (0%)
 Frame = -3

Query: 1466 RERMVLSFLPASSPSATPCTRTXXXXXXXXXXHRNTRCTRVFKLLCXXXXXXXXXXXXTP 1287
            RERMV   LPA+  S+                 R     RV K LC             P
Sbjct: 10   RERMVSLSLPAAGSSSQ--------LSFSLDLLRRDPRDRVSKALCSSTSTSSRDSNPEP 61

Query: 1286 ADRSQPNHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1107
              R Q      + GN+AG+RL+E V    ++K+RLDSWISSRI  VSRARIQSSIRSGLV
Sbjct: 62   FQRQQ----RVITGNHAGLRLEERVEIG-AEKTRLDSWISSRIETVSRARIQSSIRSGLV 116

Query: 1106 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 927
            +VNGRT+ KVSH++K GD V CT+SELQPLRAE EDIPLDIVYEDAH+LVVNKPAHMVVH
Sbjct: 117  TVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVH 176

Query: 926  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSENE---YXXXXXXXXXXXXXXXXXEISS 756
            PAPGNANGTLVN ILHHC LPT A  N    SE+E                      ISS
Sbjct: 177  PAPGNANGTLVNAILHHCRLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISS 236

Query: 755  NVCNDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSY 576
                  VRPGIVHRLDKGTSGLLVVAKDEHSHA L+EQFK HTI RVY+SLT GVP+PS 
Sbjct: 237  ENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSS 296

Query: 575  GRIAIPISRDSNNRIRMAAVSDTS-KRHARHAASRYRVIEILADGGSALLEWRLETGRTH 399
            GRI IPI+RDSNNRIRMAAV  TS  RHAR+AA    +IE+L  GGSAL+EWRLETGRTH
Sbjct: 297  GRIEIPIARDSNNRIRMAAVLGTSNSRHARYAA----IIELLGRGGSALVEWRLETGRTH 352

Query: 398  QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLG 219
            QIRAHAKY+GIPLLGDEVYGGTK+MALSLLR  T              LQRPCLHA +LG
Sbjct: 353  QIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSSHHGHLSQILSKLQRPCLHASSLG 412

Query: 218  FKHPHTDEDMQFSCPPPADFAELLSQLRAI 129
            FKHPHT E ++FSCPPP DFAE+L QL++I
Sbjct: 413  FKHPHTGEYLRFSCPPPDDFAEVLDQLQSI 442


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  495 bits (1274), Expect = e-137
 Identities = 260/388 (67%), Positives = 302/388 (77%)
 Frame = -3

Query: 1268 NHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRT 1089
            N N   R NY+GV+L+E+V +K S KSRLDSWISSRI G+SRAR+QSSI+SGLVSVNG+ 
Sbjct: 69   NQNPGQRINYSGVKLEESVDSK-SGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKV 127

Query: 1088 ISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNA 909
            I KVSH VKAGDKV+C ISELQPLRAEPE+IPLDIVYED ++LVVNKPAHMVVHPAPGNA
Sbjct: 128  IDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNA 187

Query: 908  NGTLVNGILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRP 729
             GTLVNGILHHCSLPT +  + ++ S  E                   + S+    SVRP
Sbjct: 188  TGTLVNGILHHCSLPTVS--SQEVLSGAE----------DVSDDDDEGLCSSSYAASVRP 235

Query: 728  GIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISR 549
            GIVHRLDKGTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVP+P  GRI +PI R
Sbjct: 236  GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGR 295

Query: 548  DSNNRIRMAAVSDTSKRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLG 369
            D +NRIRMAA+ + ++  ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+G
Sbjct: 296  DVSNRIRMAAIVEPNRGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIG 355

Query: 368  IPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDM 189
            IPLLGDEVYGGT+NMALSLLR+ T              L+RPCLHA  LGF HP T +++
Sbjct: 356  IPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEI 415

Query: 188  QFSCPPPADFAELLSQLRAISTKKVIYQ 105
             FSCPPP DF E+LSQLR + T+K+ ++
Sbjct: 416  HFSCPPPPDFTEILSQLREMGTEKLSFK 443


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  493 bits (1270), Expect = e-136
 Identities = 256/381 (67%), Positives = 296/381 (77%), Gaps = 1/381 (0%)
 Frame = -3

Query: 1250 RGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1071
            R NY+GV+L+ETV  K  K  RLDSW+SSRI GVSRAR+QSSIRSGLVSVNGR   KVSH
Sbjct: 52   RSNYSGVKLEETVDGKTGKL-RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSH 110

Query: 1070 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 891
            +VK GDKVDCTI++L+PLRAEPEDIPLDIV+ED H+LVVNKPAHMVVHPAPGNA GTLV+
Sbjct: 111  MVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVS 170

Query: 890  GILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRL 711
            GILHHCSLPT +F   ++ S+ E                  + SS +C  SVRPGIVHRL
Sbjct: 171  GILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPGIVHRL 230

Query: 710  DKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISRDSNNRI 531
            DKGTSGLLVVAK+E+S A L+EQFK HTI RVY+S+T GVP+   GR+ IPI RDSNNRI
Sbjct: 231  DKGTSGLLVVAKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRI 290

Query: 530  RMAAVSDTSKR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLG 354
            RMAA+  T K   +RHA SRY+VIE LA GGSAL+EWRLETGRTHQIRAHAKYLGIPL+G
Sbjct: 291  RMAAIPGTPKSGKSRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMG 350

Query: 353  DEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCP 174
            DEVYGGTKNMALSLL+  TP             + RPCLHA TLGF+HP T E++ F+  
Sbjct: 351  DEVYGGTKNMALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRL 410

Query: 173  PPADFAELLSQLRAISTKKVI 111
            PP DFAE+LS LRAI+T+KV+
Sbjct: 411  PPPDFAEILSYLRAINTEKVL 431


>ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Populus
            euphratica]
          Length = 416

 Score =  493 bits (1269), Expect = e-136
 Identities = 259/384 (67%), Positives = 300/384 (78%)
 Frame = -3

Query: 1268 NHNHPVRGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRT 1089
            N N   R NY+GV+L+E+V +K S KSRLDSWISSRI G+SRAR+QSSI+SGLVSVNG+ 
Sbjct: 40   NQNPGERINYSGVKLEESVDSK-SGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKV 98

Query: 1088 ISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNA 909
            I KVSH VKAGDKV+C ISELQPLRAEPE+IPLDIVYED ++LVVNKPAHMVVHPAPGNA
Sbjct: 99   IDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNA 158

Query: 908  NGTLVNGILHHCSLPTAAFPNSDIFSENEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRP 729
             GTLVNGILHHCSLPT +  + ++ S  E                   + S+    SVRP
Sbjct: 159  TGTLVNGILHHCSLPTVS--SQEVLSGAE---------DVSDDDDDEGLCSSSHAASVRP 207

Query: 728  GIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTMGVPSPSYGRIAIPISR 549
            GIVHRLDKGTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVP+P  GRI +PI R
Sbjct: 208  GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGR 267

Query: 548  DSNNRIRMAAVSDTSKRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLG 369
            D +NRIRMAA+++ ++  ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+G
Sbjct: 268  DVSNRIRMAAIAEPNRGQARHAASRYKVIEILARGGSALVEWRLETGRTHQIRAHAKYIG 327

Query: 368  IPLLGDEVYGGTKNMALSLLRAWTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDM 189
            IPLLGDEVYGGT+NMALSLLR+ T              L+RPCLHA  LGF HP T +++
Sbjct: 328  IPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEI 387

Query: 188  QFSCPPPADFAELLSQLRAISTKK 117
             F+CPPP DF E+LSQLR + T+K
Sbjct: 388  HFACPPPPDFTEILSQLREMGTEK 411