BLASTX nr result
ID: Cinnamomum24_contig00032794
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00032794
(320 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 43 2e-07
ref|XP_008389974.1| PREDICTED: putative ribonuclease H protein A... 48 3e-07
ref|XP_008384440.1| PREDICTED: putative ribonuclease H protein A... 48 3e-07
ref|XP_008357937.1| PREDICTED: putative ribonuclease H protein A... 47 5e-07
ref|XP_008369981.1| PREDICTED: uncharacterized protein LOC103433... 47 7e-07
ref|XP_008346905.1| PREDICTED: uncharacterized protein LOC103409... 49 7e-07
ref|XP_008377870.1| PREDICTED: putative ribonuclease H protein A... 47 7e-07
ref|XP_008375089.1| PREDICTED: uncharacterized protein LOC103438... 46 1e-06
ref|XP_009140196.1| PREDICTED: putative ribonuclease H protein A... 41 2e-06
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 41 1e-05
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 43.1 bits (100), Expect(2) = 2e-07
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 205 NDASFIKLGW-LATTSSSLWADWMSCRYFLKSVMWSTITPNS-GSCIWRKIRSLAHHVFS 32
ND S +KL W + + S+SLW W++ K +WS S GS IWRKI + S
Sbjct: 530 NDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKS 589
Query: 31 CSQWIIGN 8
S+ +GN
Sbjct: 590 FSRVEVGN 597
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
+FLWSG++ + + ++ WD+VC P EG GL
Sbjct: 492 SFLWSGSEMSSHKAKISWDIVCKPKAEGGLGL 523
>ref|XP_008389974.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
domestica]
Length = 805
Score = 47.8 bits (112), Expect(2) = 3e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N + +KLGWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 291 NTTALLKLGWLIITTDSPWSIYJRXRFKLHGRLYSCSYMRSS--IWPGIKSILHILFQNC 348
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 349 RWVIGN 354
Score = 33.5 bits (75), Expect(2) = 3e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG+ + K V W +C P EG GL
Sbjct: 253 NFIWSGDVTSKKXVTVSWXQICAPKNEGGLGL 284
>ref|XP_008384440.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
domestica]
Length = 577
Score = 48.1 bits (113), Expect(2) = 3e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N + +KLGWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 63 NTTALLKLGWLIITTDSPWSIYLRXRFKLHGRLYSCSYKRSS--IWPGIKSILHILFQNC 120
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 121 RWVIGN 126
Score = 33.1 bits (74), Expect(2) = 3e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG+ + K V W +C P EG GL
Sbjct: 25 NFIWSGDVTSKKLVTVSWHQICAPKNEGGLGL 56
>ref|XP_008357937.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
domestica]
Length = 1048
Score = 47.0 bits (110), Expect(2) = 5e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N + +KLGWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 534 NTTALLKLGWLIITTDSPWSIYLRERFKLHGRLYSCSYKRSS--IWPGIKSILHILFQNC 591
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 592 RWVIGN 597
Score = 33.1 bits (74), Expect(2) = 5e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG+ + K V W +C P EG GL
Sbjct: 496 NFIWSGDVTSKKSVTVSWRQICAPKNEGGLGL 527
>ref|XP_008369981.1| PREDICTED: uncharacterized protein LOC103433498 [Malus domestica]
Length = 1384
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N + +KLGWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 870 NTXALLKLGWLIITTDSPWSIYLRERFKLHGRLYSCSYKRSS--IWPGIKSIJHILFQNC 927
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 928 RWVIGN 933
Score = 33.1 bits (74), Expect(2) = 7e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG+ + K V W +C P EG GL
Sbjct: 832 NFIWSGDVTSKKXVTVSWRQICAPKNEGGLGL 863
>ref|XP_008346905.1| PREDICTED: uncharacterized protein LOC103409892 [Malus domestica]
Length = 1251
Score = 48.9 bits (115), Expect(2) = 7e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N + +KLGWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 737 NXTALLKLGWLIITTDSPWSIYJRXRFKLHGRLYSCSYXRSS--IWPGIKSILHILFQXC 794
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 795 RWVIGN 800
Score = 30.8 bits (68), Expect(2) = 7e-07
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG + K W +C P EG GL
Sbjct: 699 NFIWSGXVTSKKXVTXSWXQICAPKNEGGLGL 730
>ref|XP_008377870.1| PREDICTED: putative ribonuclease H protein At1g65750 [Malus
domestica]
Length = 591
Score = 46.6 bits (109), Expect(2) = 7e-07
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N + +KLGWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 77 NXTALLKLGWLIITTDSPWSIYIRKRFKLHGRLYSCSYMRSS--IWPGIKSILHILFQNC 134
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 135 RWVIGN 140
Score = 33.1 bits (74), Expect(2) = 7e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG+ + K V W +C P EG GL
Sbjct: 39 NFIWSGDVTSKKLVTVSWHQICAPKNEGGLGL 70
>ref|XP_008375089.1| PREDICTED: uncharacterized protein LOC103438319 [Malus domestica]
Length = 1384
Score = 45.8 bits (107), Expect(2) = 1e-06
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCS 26
N +K+GWL T+ S W+ ++ R+ L ++S S IW I+S+ H +F
Sbjct: 870 NTTXLLKJGWLIITTDSPWSIYLRERFKLHGRLYSC--SYKXSSIWPGIKSILHILFQNC 927
Query: 25 QWIIGN 8
+W+IGN
Sbjct: 928 RWVIGN 933
Score = 33.1 bits (74), Expect(2) = 1e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 318 NFLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
NF+WSG+ + K V W +C P EG GL
Sbjct: 832 NFIWSGDVTSKKSVTVSWRQICAPKNEGGLGL 863
>ref|XP_009140196.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 384
Score = 41.2 bits (95), Expect(2) = 2e-06
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 190 IKLGW-LATTSSSLWADWMSCRYFLKSVMWSTITPNSGSCIWRKIRSLAHHVFSCSQWII 14
+KL W L + ++SLW W+ +V+W GS +WRK+ + + V S +W I
Sbjct: 47 LKLIWRLFSNTASLWVSWVRQYLLRDAVLWDAKDTGMGSWVWRKLLRIRNIVKSFVRWDI 106
Query: 13 GN 8
G+
Sbjct: 107 GD 108
Score = 37.0 bits (84), Expect(2) = 2e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 315 FLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
FLWSG+ ++T R ++ W+ VC P EG G+
Sbjct: 5 FLWSGSPNITSRAKIAWEDVCCPREEGGLGI 35
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 40.8 bits (94), Expect(2) = 1e-05
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 205 NDASFIKLGWLATTSSSLWADWMSCRYFLKSVMWS-TITPNSGSCIWRKIRSLAHHVFSC 29
N +KL W +SSSLW W+ K WS T GS +WRK+ H
Sbjct: 103 NKVCCLKLIWRLLSSSSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGF 162
Query: 28 SQWIIGN 8
+Q+ I N
Sbjct: 163 TQYEIRN 169
Score = 35.0 bits (79), Expect(2) = 1e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 315 FLWSGNQSMTKRNQVRWDVVCLPTMEGVWGL 223
FLWSG + K+ +V W+ VC+P EG GL
Sbjct: 66 FLWSGPELNRKKAKVSWNDVCMPKEEGGLGL 96