BLASTX nr result

ID: Cinnamomum24_contig00032574 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00032574
         (337 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008438231.1| PREDICTED: pentatricopeptide repeat-containi...    60   5e-07
ref|XP_011624587.1| PREDICTED: pentatricopeptide repeat-containi...    57   5e-06
ref|XP_007216544.1| hypothetical protein PRUPE_ppb007734mg [Prun...    57   7e-06

>ref|XP_008438231.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis melo]
          Length = 710

 Score = 60.5 bits (145), Expect = 5e-07
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = -1

Query: 277 TTPAAQTASSNSSKN-KSHPIFPLLGR--KLQHMRDIQQIHGRLIITGFIYHTPXXXXXX 107
           +TP   TA  +   N K +PIFPLL +  K   + + QQ+H ++++TGFI+H P      
Sbjct: 14  STPYQPTAKPHLKFNQKPYPIFPLLEKSTKWTQLTEFQQLHAQMVVTGFIHHKPSLNKLI 73

Query: 106 XXXXXXXXXXXTYAYKVFRQIPGPNIVIWNTIIRG 2
                       YAY VF      +I+ WNT++RG
Sbjct: 74  ALVLSMGSLGVGYAYSVFAHTRELDILTWNTMLRG 108


>ref|XP_011624587.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Amborella trichopoda]
          Length = 606

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 33/96 (34%), Positives = 45/96 (46%)
 Frame = -1

Query: 292 LPHNPTTPAAQTASSNSSKNKSHPIFPLLGRKLQHMRDIQQIHGRLIITGFIYHTPXXXX 113
           LPH        T+ SNS   K+H +FPLL  K   ++ +QQ+H ++ +TG I HT     
Sbjct: 7   LPHK----LIPTSESNSLSMKTHHLFPLLETKFTEVKQLQQVHAQMTVTGLIKHT--GAL 60

Query: 112 XXXXXXXXXXXXXTYAYKVFRQIPGPNIVIWNTIIR 5
                         YA  V   +  P +V WNTIIR
Sbjct: 61  AKFISSLSNFGNLAYAMVVCTYVDHPKVVAWNTIIR 96


>ref|XP_007216544.1| hypothetical protein PRUPE_ppb007734mg [Prunus persica]
           gi|462412694|gb|EMJ17743.1| hypothetical protein
           PRUPE_ppb007734mg [Prunus persica]
          Length = 297

 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
 Frame = -1

Query: 274 TPAAQTASSNSSKNK---SHPIFPLLGRKLQHMRDIQQIHGRLIITGFIYHTPXXXXXXX 104
           TP   + +S++S +K     P   +L ++  +M+D+Q+IH  LI TG +  T        
Sbjct: 2   TPCCCSFTSSTSISKFISERPHLSMLEKQCTNMKDLQKIHAHLIKTGLVSDT-VAASRVL 60

Query: 103 XXXXXXXXXXTYAYKVFRQIPGPNIVIWNTIIRG 2
                      YAY VFR I  PN+ IWNTIIRG
Sbjct: 61  AFCASPAGNINYAYMVFRNIQNPNLFIWNTIIRG 94


Top