BLASTX nr result
ID: Cinnamomum24_contig00029542
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cinnamomum24_contig00029542 (427 letters) Database: ./nr 77,306,371 sequences; 28,104,191,420 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymeras... 208 1e-51 ref|YP_009171970.1| RNA polymerase beta (chloroplast) [Machilus ... 206 5e-51 gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum] 205 9e-51 gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum] 205 9e-51 gb|ALN11594.1| RNA polymerase beta (chloroplast) [Scutellaria in... 205 1e-50 ref|YP_009162252.1| RNA polymerase beta' subunit (chloroplast) [... 205 1e-50 gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus] 204 2e-50 gb|AJE72022.1| RNA polymerase beta ' subunit (plastid) [Chamaecr... 204 3e-50 gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus] 204 3e-50 gb|AKZ23893.1| RNA polymerase beta subunit (plastid) [Physalis h... 203 4e-50 gb|AKZ23891.1| RNA polymerase beta subunit (plastid) [Veronica a... 203 4e-50 gb|AKZ23886.1| RNA polymerase beta subunit (plastid) [Verbascum ... 203 4e-50 gb|AKZ23885.1| RNA polymerase beta subunit (plastid) [Penstemon ... 203 4e-50 ref|YP_009171859.1| RpoC1 (chloroplast) [Solanum nigrum] gi|8332... 203 4e-50 ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna... 203 4e-50 dbj|BAE47988.1| RNA polymerase beta' subunit [Nicotiana tomentos... 203 4e-50 emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna] 203 4e-50 ref|YP_009142317.1| RNA polymerase beta (chloroplast) [Iochroma ... 203 4e-50 ref|YP_009139459.1| RNA polymerase beta (chloroplast) [Dunalia s... 203 4e-50 ref|YP_009131787.1| RNA polymerase beta' subunit-1 (chloroplast)... 203 4e-50 >sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta'; Short=RNA polymerase subunit beta' gi|5457428|emb|CAB48413.1| RNA polymerase A beta prime subunit [Sinapis alba] Length = 688 Score = 208 bits (529), Expect = 1e-51 Identities = 96/104 (92%), Positives = 99/104 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EK DPKFCEQCGVEFVDSRIRRYQMGYIKL Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDEKGDPKFCEQCGVEFVDSRIRRYQMGYIKLT 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRN*DFT 103 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDRN +F+ Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVCFDRNPNFS 154 >ref|YP_009171970.1| RNA polymerase beta (chloroplast) [Machilus yunnanensis] gi|938340030|ref|YP_009172051.1| RNA polymerase beta (chloroplast) [Machilus balansae] gi|913021825|gb|AKU70965.1| RNA polymerase beta (chloroplast) [Cinnamomum micranthum f. kanehirae] gi|929982313|gb|ALF35675.1| RNA polymerase beta (chloroplast) [Machilus yunnanensis] gi|929982395|gb|ALF35756.1| RNA polymerase beta (chloroplast) [Machilus balansae] Length = 683 Score = 206 bits (524), Expect = 5e-51 Identities = 96/99 (96%), Positives = 96/99 (96%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149 >gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum] Length = 682 Score = 205 bits (522), Expect = 9e-51 Identities = 95/99 (95%), Positives = 96/99 (96%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFAR 149 >gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum] Length = 682 Score = 205 bits (522), Expect = 9e-51 Identities = 95/99 (95%), Positives = 96/99 (96%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFAR 149 >gb|ALN11594.1| RNA polymerase beta (chloroplast) [Scutellaria insignis] Length = 681 Score = 205 bits (521), Expect = 1e-50 Identities = 94/95 (98%), Positives = 95/95 (100%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 111 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 145 >ref|YP_009162252.1| RNA polymerase beta' subunit (chloroplast) [Scutellaria baicalensis] gi|827345831|gb|AKJ77132.1| RNA polymerase beta' subunit (chloroplast) [Scutellaria baicalensis] Length = 691 Score = 205 bits (521), Expect = 1e-50 Identities = 94/95 (98%), Positives = 95/95 (100%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 118 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152 >gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus] Length = 688 Score = 204 bits (519), Expect = 2e-50 Identities = 95/99 (95%), Positives = 96/99 (96%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEFVDSR+RRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRVRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDR Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV-FDR 148 >gb|AJE72022.1| RNA polymerase beta ' subunit (plastid) [Chamaecrista fasciculata] Length = 682 Score = 204 bits (518), Expect = 3e-50 Identities = 94/99 (94%), Positives = 96/99 (96%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG++KEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDKKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFAR 149 >gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus] Length = 696 Score = 204 bits (518), Expect = 3e-50 Identities = 95/99 (95%), Positives = 96/99 (96%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG EKEDPKFCEQCGVEF+DSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGAEKEDPKFCEQCGVEFIDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDR Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV-FDR 155 >gb|AKZ23893.1| RNA polymerase beta subunit (plastid) [Physalis heterophylla] gi|916442622|gb|AKZ23894.1| RNA polymerase beta subunit (plastid) [Physalis virginiana] Length = 688 Score = 203 bits (517), Expect = 4e-50 Identities = 94/99 (94%), Positives = 95/99 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 156 >gb|AKZ23891.1| RNA polymerase beta subunit (plastid) [Veronica americana] Length = 691 Score = 203 bits (517), Expect = 4e-50 Identities = 93/95 (97%), Positives = 94/95 (98%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152 >gb|AKZ23886.1| RNA polymerase beta subunit (plastid) [Verbascum thapsus] Length = 684 Score = 203 bits (517), Expect = 4e-50 Identities = 93/95 (97%), Positives = 94/95 (98%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 145 >gb|AKZ23885.1| RNA polymerase beta subunit (plastid) [Penstemon gracilis] Length = 691 Score = 203 bits (517), Expect = 4e-50 Identities = 93/95 (97%), Positives = 94/95 (98%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152 >ref|YP_009171859.1| RpoC1 (chloroplast) [Solanum nigrum] gi|833204738|gb|AKM21936.1| RpoC1 (chloroplast) [Solanum nigrum] gi|916442625|gb|AKZ23895.1| RNA polymerase beta subunit (plastid) [Solanum triflorum] gi|937501419|gb|ALI31131.1| RNA polymerase beta' subunit 1 (chloroplast) [Solanum nigrum] Length = 688 Score = 203 bits (517), Expect = 4e-50 Identities = 94/99 (94%), Positives = 95/99 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 156 >ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna] gi|41018086|sp|Q8S8Y0.2|RPOC1_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta'; Short=RNA polymerase subunit beta' Length = 681 Score = 203 bits (517), Expect = 4e-50 Identities = 94/99 (94%), Positives = 95/99 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 51 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 110 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149 >dbj|BAE47988.1| RNA polymerase beta' subunit [Nicotiana tomentosiformis] Length = 688 Score = 203 bits (517), Expect = 4e-50 Identities = 94/99 (94%), Positives = 95/99 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 156 >emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna] Length = 688 Score = 203 bits (517), Expect = 4e-50 Identities = 94/99 (94%), Positives = 95/99 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 156 >ref|YP_009142317.1| RNA polymerase beta (chloroplast) [Iochroma tingoanum] gi|820957805|gb|AKH02310.1| RNA polymerase beta (chloroplast) [Iochroma tingoanum] Length = 692 Score = 203 bits (517), Expect = 4e-50 Identities = 93/95 (97%), Positives = 94/95 (98%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152 >ref|YP_009139459.1| RNA polymerase beta (chloroplast) [Dunalia solanacea] gi|817597843|gb|AKF78403.1| RNA polymerase beta (chloroplast) [Dunalia solanacea] Length = 692 Score = 203 bits (517), Expect = 4e-50 Identities = 93/95 (97%), Positives = 94/95 (98%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCDV Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 152 >ref|YP_009131787.1| RNA polymerase beta' subunit-1 (chloroplast) [Solanum chilense] gi|779776298|gb|AJY78766.1| RNA polymerase beta' subunit-1 (chloroplast) [Solanum chilense] Length = 688 Score = 203 bits (517), Expect = 4e-50 Identities = 94/99 (94%), Positives = 95/99 (95%) Frame = -2 Query: 414 EKDGLFCERIFGPIKSGICACGNYRVIGEEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 235 EKDGLFCERIFGPIKSGICACGNYRVIG+EKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA Sbjct: 58 EKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLA 117 Query: 234 CPATHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 118 CP THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 156