BLASTX nr result
ID: Cinnamomum24_contig00029261
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00029261
(467 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AIO05710.1| putative RNA-dependent RNA polymerase 5, partial ... 184 1e-54
ref|XP_009385771.1| PREDICTED: probable RNA-dependent RNA polyme... 182 4e-53
ref|XP_009385772.1| PREDICTED: probable RNA-dependent RNA polyme... 182 4e-53
ref|XP_009385773.1| PREDICTED: probable RNA-dependent RNA polyme... 182 4e-53
ref|XP_009385774.1| PREDICTED: probable RNA-dependent RNA polyme... 182 4e-53
ref|XP_008791522.1| PREDICTED: probable RNA-dependent RNA polyme... 174 4e-51
ref|XP_008791530.1| PREDICTED: probable RNA-dependent RNA polyme... 174 4e-51
ref|XP_008791538.1| PREDICTED: probable RNA-dependent RNA polyme... 174 4e-51
ref|XP_010249518.1| PREDICTED: probable RNA-dependent RNA polyme... 144 1e-44
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 147 2e-44
gb|KRH74266.1| hypothetical protein GLYMA_01G008700 [Glycine max] 147 2e-44
gb|KRH74268.1| hypothetical protein GLYMA_01G008700 [Glycine max] 147 2e-44
gb|KHN40391.1| Putative RNA-dependent RNA polymerase 5 [Glycine ... 146 2e-44
ref|XP_010532293.1| PREDICTED: probable RNA-dependent RNA polyme... 157 1e-43
ref|XP_010532294.1| PREDICTED: probable RNA-dependent RNA polyme... 157 1e-43
ref|XP_010532295.1| PREDICTED: probable RNA-dependent RNA polyme... 157 1e-43
ref|XP_010532296.1| PREDICTED: probable RNA-dependent RNA polyme... 157 1e-43
ref|XP_009117512.1| PREDICTED: probable RNA-dependent RNA polyme... 151 2e-43
ref|XP_009117513.1| PREDICTED: probable RNA-dependent RNA polyme... 151 2e-43
emb|CDY13891.1| BnaA09g43930D [Brassica napus] 151 2e-43
>gb|AIO05710.1| putative RNA-dependent RNA polymerase 5, partial [Cocos nucifera]
Length = 590
Score = 184 bits (467), Expect(2) = 1e-54
Identities = 85/121 (70%), Positives = 104/121 (85%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQNVH +K+AA +VA ++G+MDDFL RMI CGIPL EPYL+S L VLMREE K+
Sbjct: 263 NALDDAQNVHYNKQAALRVALKYGDMDDFLVARMILCGIPLSEPYLQSRLLVLMREEMKA 322
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPVSECY+LMGTVDPTG L NEVC+IL+NG +SG+VL+++HPGLHFGDIH +TA
Sbjct: 323 LKEGKLPVSECYHLMGTVDPTGTLKPNEVCIILENGHVSGDVLVYRHPGLHFGDIHILTA 382
Query: 3 T 1
T
Sbjct: 383 T 383
Score = 56.2 bits (134), Expect(2) = 1e-54
Identities = 25/38 (65%), Positives = 34/38 (89%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V TSN+PK+++LS+ L+ALL+YGGVPKEYF++LL AL
Sbjct: 228 VGTSNRPKRTFLSRNLVALLHYGGVPKEYFLELLMNAL 265
>ref|XP_009385771.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Musa
acuminata subsp. malaccensis]
Length = 996
Score = 182 bits (463), Expect(2) = 4e-53
Identities = 83/121 (68%), Positives = 104/121 (85%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQN K+AA +VA ++G+MDDFL RMI CG+PL+EPYL+ LS+LMREE+KS
Sbjct: 542 NSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPYLQFRLSILMREERKS 601
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPV +CYYLMGTVDPTG+L NEVCVIL+NGQ+SG+VL++KHPGLHFGD+H +TA
Sbjct: 602 LKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVYKHPGLHFGDVHVLTA 661
Query: 3 T 1
T
Sbjct: 662 T 662
Score = 52.4 bits (124), Expect(2) = 4e-53
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V TSN+PK++ LS++LI LL+YGGVPKE+F++LL +L
Sbjct: 507 VATSNQPKRTCLSRHLIVLLHYGGVPKEFFLELLMNSL 544
>ref|XP_009385772.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Musa
acuminata subsp. malaccensis]
Length = 995
Score = 182 bits (463), Expect(2) = 4e-53
Identities = 83/121 (68%), Positives = 104/121 (85%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQN K+AA +VA ++G+MDDFL RMI CG+PL+EPYL+ LS+LMREE+KS
Sbjct: 541 NSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPYLQFRLSILMREERKS 600
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPV +CYYLMGTVDPTG+L NEVCVIL+NGQ+SG+VL++KHPGLHFGD+H +TA
Sbjct: 601 LKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVYKHPGLHFGDVHVLTA 660
Query: 3 T 1
T
Sbjct: 661 T 661
Score = 52.4 bits (124), Expect(2) = 4e-53
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V TSN+PK++ LS++LI LL+YGGVPKE+F++LL +L
Sbjct: 506 VATSNQPKRTCLSRHLIVLLHYGGVPKEFFLELLMNSL 543
>ref|XP_009385773.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3 [Musa
acuminata subsp. malaccensis]
Length = 947
Score = 182 bits (463), Expect(2) = 4e-53
Identities = 83/121 (68%), Positives = 104/121 (85%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQN K+AA +VA ++G+MDDFL RMI CG+PL+EPYL+ LS+LMREE+KS
Sbjct: 493 NSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPYLQFRLSILMREERKS 552
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPV +CYYLMGTVDPTG+L NEVCVIL+NGQ+SG+VL++KHPGLHFGD+H +TA
Sbjct: 553 LKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVYKHPGLHFGDVHVLTA 612
Query: 3 T 1
T
Sbjct: 613 T 613
Score = 52.4 bits (124), Expect(2) = 4e-53
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V TSN+PK++ LS++LI LL+YGGVPKE+F++LL +L
Sbjct: 458 VATSNQPKRTCLSRHLIVLLHYGGVPKEFFLELLMNSL 495
>ref|XP_009385774.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X4 [Musa
acuminata subsp. malaccensis]
Length = 802
Score = 182 bits (463), Expect(2) = 4e-53
Identities = 83/121 (68%), Positives = 104/121 (85%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQN K+AA +VA ++G+MDDFL RMI CG+PL+EPYL+ LS+LMREE+KS
Sbjct: 348 NSLDDAQNARYSKQAALRVALKYGDMDDFLVSRMILCGMPLDEPYLQFRLSILMREERKS 407
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPV +CYYLMGTVDPTG+L NEVCVIL+NGQ+SG+VL++KHPGLHFGD+H +TA
Sbjct: 408 LKTGKLPVMDCYYLMGTVDPTGLLKPNEVCVILENGQVSGDVLVYKHPGLHFGDVHVLTA 467
Query: 3 T 1
T
Sbjct: 468 T 468
Score = 52.4 bits (124), Expect(2) = 4e-53
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V TSN+PK++ LS++LI LL+YGGVPKE+F++LL +L
Sbjct: 313 VATSNQPKRTCLSRHLIVLLHYGGVPKEFFLELLMNSL 350
>ref|XP_008791522.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
[Phoenix dactylifera]
Length = 1006
Score = 174 bits (441), Expect(2) = 4e-51
Identities = 81/121 (66%), Positives = 101/121 (83%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQNV +K+AA +VA ++G+MDDFL RMI CGIPL EPYL+S L VL REE K+
Sbjct: 548 NALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLGEPYLQSRLLVLRREEMKA 607
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPVSECYYLMG+VDPTG L NEVC+IL+NG +SG+VL+++ PGLHFGD+H +TA
Sbjct: 608 LKEGKLPVSECYYLMGSVDPTGTLKPNEVCIILENGHVSGDVLVYRQPGLHFGDMHILTA 667
Query: 3 T 1
T
Sbjct: 668 T 668
Score = 54.3 bits (129), Expect(2) = 4e-51
Identities = 24/38 (63%), Positives = 34/38 (89%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V +SN+PK+++LS+ +IALL+YGGVPKEYF++LL AL
Sbjct: 513 VGSSNRPKRTFLSRNIIALLHYGGVPKEYFLELLMNAL 550
>ref|XP_008791530.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Phoenix dactylifera]
Length = 981
Score = 174 bits (441), Expect(2) = 4e-51
Identities = 81/121 (66%), Positives = 101/121 (83%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQNV +K+AA +VA ++G+MDDFL RMI CGIPL EPYL+S L VL REE K+
Sbjct: 523 NALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLGEPYLQSRLLVLRREEMKA 582
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPVSECYYLMG+VDPTG L NEVC+IL+NG +SG+VL+++ PGLHFGD+H +TA
Sbjct: 583 LKEGKLPVSECYYLMGSVDPTGTLKPNEVCIILENGHVSGDVLVYRQPGLHFGDMHILTA 642
Query: 3 T 1
T
Sbjct: 643 T 643
Score = 54.3 bits (129), Expect(2) = 4e-51
Identities = 24/38 (63%), Positives = 34/38 (89%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V +SN+PK+++LS+ +IALL+YGGVPKEYF++LL AL
Sbjct: 488 VGSSNRPKRTFLSRNIIALLHYGGVPKEYFLELLMNAL 525
>ref|XP_008791538.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X3
[Phoenix dactylifera]
Length = 957
Score = 174 bits (441), Expect(2) = 4e-51
Identities = 81/121 (66%), Positives = 101/121 (83%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +DDAQNV +K+AA +VA ++G+MDDFL RMI CGIPL EPYL+S L VL REE K+
Sbjct: 499 NALDDAQNVQYNKQAALRVALKYGDMDDFLVARMILCGIPLGEPYLQSRLLVLRREEMKA 558
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTA 4
LK GKLPVSECYYLMG+VDPTG L NEVC+IL+NG +SG+VL+++ PGLHFGD+H +TA
Sbjct: 559 LKEGKLPVSECYYLMGSVDPTGTLKPNEVCIILENGHVSGDVLVYRQPGLHFGDMHILTA 618
Query: 3 T 1
T
Sbjct: 619 T 619
Score = 54.3 bits (129), Expect(2) = 4e-51
Identities = 24/38 (63%), Positives = 34/38 (89%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V +SN+PK+++LS+ +IALL+YGGVPKEYF++LL AL
Sbjct: 464 VGSSNRPKRTFLSRNIIALLHYGGVPKEYFLELLMNAL 501
>ref|XP_010249518.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
[Nelumbo nucifera]
Length = 1045
Score = 144 bits (364), Expect(2) = 1e-44
Identities = 66/93 (70%), Positives = 81/93 (87%)
Frame = -3
Query: 363 HGIDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKS 184
+ +D+AQ++HS+KRAA KVA ++G+MDDFL RMI CGIPLEEPYL++ LSVLMREE+K
Sbjct: 540 NALDEAQSIHSNKRAALKVALKYGDMDDFLVSRMILCGIPLEEPYLQTRLSVLMREERKG 599
Query: 183 LKGGKLPVSECYYLMGTVDPTGMLNANEVCVIL 85
LK GK+P+SECYYLMGT DPTGML NE+CVIL
Sbjct: 600 LKAGKIPMSECYYLMGTADPTGMLGMNEICVIL 632
Score = 62.0 bits (149), Expect(2) = 1e-44
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
V TSN+P+KSYLSKYLIALLNYGGVP +YF++LL AL
Sbjct: 505 VATSNQPRKSYLSKYLIALLNYGGVPTDYFMNLLMNAL 542
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max] gi|947126413|gb|KRH74267.1| hypothetical protein
GLYMA_01G008700 [Glycine max]
Length = 988
Score = 147 bits (371), Expect(2) = 2e-44
Identities = 66/119 (55%), Positives = 94/119 (78%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
++DA +V+S+KR+A + + GE D++ A MI CGIPL+EP+L+ HLS REE+K L+
Sbjct: 538 MEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLR 597
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GGKL + +C+YLMGTVDPTG L N+VC+I +N QI G+VL++++PGLHFGDIH++ AT
Sbjct: 598 GGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDAT 656
Score = 58.9 bits (141), Expect(2) = 2e-44
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
VTTSNKPK+ YLSK+LIALL++GGVP E+F+DLL
Sbjct: 501 VTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLL 534
>gb|KRH74266.1| hypothetical protein GLYMA_01G008700 [Glycine max]
Length = 976
Score = 147 bits (371), Expect(2) = 2e-44
Identities = 66/119 (55%), Positives = 94/119 (78%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
++DA +V+S+KR+A + + GE D++ A MI CGIPL+EP+L+ HLS REE+K L+
Sbjct: 526 MEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLR 585
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GGKL + +C+YLMGTVDPTG L N+VC+I +N QI G+VL++++PGLHFGDIH++ AT
Sbjct: 586 GGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDAT 644
Score = 58.9 bits (141), Expect(2) = 2e-44
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
VTTSNKPK+ YLSK+LIALL++GGVP E+F+DLL
Sbjct: 489 VTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLL 522
>gb|KRH74268.1| hypothetical protein GLYMA_01G008700 [Glycine max]
Length = 837
Score = 147 bits (371), Expect(2) = 2e-44
Identities = 66/119 (55%), Positives = 94/119 (78%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
++DA +V+S+KR+A + + GE D++ A MI CGIPL+EP+L+ HLS REE+K L+
Sbjct: 538 MEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLR 597
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GGKL + +C+YLMGTVDPTG L N+VC+I +N QI G+VL++++PGLHFGDIH++ AT
Sbjct: 598 GGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDAT 656
Score = 58.9 bits (141), Expect(2) = 2e-44
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
VTTSNKPK+ YLSK+LIALL++GGVP E+F+DLL
Sbjct: 501 VTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLL 534
>gb|KHN40391.1| Putative RNA-dependent RNA polymerase 5 [Glycine soja]
Length = 985
Score = 146 bits (368), Expect(2) = 2e-44
Identities = 66/117 (56%), Positives = 92/117 (78%)
Frame = -3
Query: 351 DAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLKGG 172
DA +V+S+KR+A + + GE D++ A MI CGIPL+EP+L+ HLS REE+K L+GG
Sbjct: 536 DANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGG 595
Query: 171 KLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
KL + +C+YLMGTVDPTG L N+VC+I +N QI G+VL++++PGLHFGDIH++ AT
Sbjct: 596 KLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHKMDAT 652
Score = 59.7 bits (143), Expect(2) = 2e-44
Identities = 29/39 (74%), Positives = 35/39 (89%), Gaps = 2/39 (5%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL--NMA 357
VTTSNKPK+ YLSK+LIALL++GGVP E+F+DLL NMA
Sbjct: 497 VTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMA 535
>ref|XP_010532293.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
[Tarenaya hassleriana]
Length = 1054
Score = 157 bits (396), Expect(2) = 1e-43
Identities = 72/119 (60%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ + D RAA KVA + +MDD+ A+ MI GIPLEEP+L+ HLS+L++ E+K LK
Sbjct: 598 LEESKTIFYDTRAALKVALNYADMDDYNAVDMITAGIPLEEPFLKHHLSILLKTERKDLK 657
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKLPV+E YYLMGTVDPTGML +EVCVIL+ GQISG+VL++++PGLHFGDIH + AT
Sbjct: 658 AGKLPVAESYYLMGTVDPTGMLEKDEVCVILETGQISGDVLVYRNPGLHFGDIHILKAT 716
Score = 46.2 bits (108), Expect(2) = 1e-43
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
V+TSN PK++ LS+ LIALL+YG VP ++F+D+L
Sbjct: 561 VSTSNPPKRTKLSRNLIALLSYGEVPNDFFLDIL 594
>ref|XP_010532294.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Tarenaya hassleriana]
Length = 1053
Score = 157 bits (396), Expect(2) = 1e-43
Identities = 72/119 (60%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ + D RAA KVA + +MDD+ A+ MI GIPLEEP+L+ HLS+L++ E+K LK
Sbjct: 597 LEESKTIFYDTRAALKVALNYADMDDYNAVDMITAGIPLEEPFLKHHLSILLKTERKDLK 656
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKLPV+E YYLMGTVDPTGML +EVCVIL+ GQISG+VL++++PGLHFGDIH + AT
Sbjct: 657 AGKLPVAESYYLMGTVDPTGMLEKDEVCVILETGQISGDVLVYRNPGLHFGDIHILKAT 715
Score = 46.2 bits (108), Expect(2) = 1e-43
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
V+TSN PK++ LS+ LIALL+YG VP ++F+D+L
Sbjct: 560 VSTSNPPKRTKLSRNLIALLSYGEVPNDFFLDIL 593
>ref|XP_010532295.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3
[Tarenaya hassleriana]
Length = 1018
Score = 157 bits (396), Expect(2) = 1e-43
Identities = 72/119 (60%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ + D RAA KVA + +MDD+ A+ MI GIPLEEP+L+ HLS+L++ E+K LK
Sbjct: 562 LEESKTIFYDTRAALKVALNYADMDDYNAVDMITAGIPLEEPFLKHHLSILLKTERKDLK 621
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKLPV+E YYLMGTVDPTGML +EVCVIL+ GQISG+VL++++PGLHFGDIH + AT
Sbjct: 622 AGKLPVAESYYLMGTVDPTGMLEKDEVCVILETGQISGDVLVYRNPGLHFGDIHILKAT 680
Score = 46.2 bits (108), Expect(2) = 1e-43
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
V+TSN PK++ LS+ LIALL+YG VP ++F+D+L
Sbjct: 525 VSTSNPPKRTKLSRNLIALLSYGEVPNDFFLDIL 558
>ref|XP_010532296.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X4
[Tarenaya hassleriana]
Length = 1013
Score = 157 bits (396), Expect(2) = 1e-43
Identities = 72/119 (60%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ + D RAA KVA + +MDD+ A+ MI GIPLEEP+L+ HLS+L++ E+K LK
Sbjct: 557 LEESKTIFYDTRAALKVALNYADMDDYNAVDMITAGIPLEEPFLKHHLSILLKTERKDLK 616
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKLPV+E YYLMGTVDPTGML +EVCVIL+ GQISG+VL++++PGLHFGDIH + AT
Sbjct: 617 AGKLPVAESYYLMGTVDPTGMLEKDEVCVILETGQISGDVLVYRNPGLHFGDIHILKAT 675
Score = 46.2 bits (108), Expect(2) = 1e-43
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLL 366
V+TSN PK++ LS+ LIALL+YG VP ++F+D+L
Sbjct: 520 VSTSNPPKRTKLSRNLIALLSYGEVPNDFFLDIL 553
>ref|XP_009117512.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
[Brassica rapa]
Length = 1008
Score = 151 bits (381), Expect(2) = 2e-43
Identities = 69/119 (57%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ V +KRAA + A+ +G+MD++ AL+MI GIPL+EP+L+ HLS+L+ E+ LK
Sbjct: 555 LEESKTVFDNKRAAVRAARNYGDMDEYNALQMIMSGIPLDEPHLKDHLSILLNTEKNDLK 614
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKL V+E YYLMGTVDPTG L NEVCVIL++GQISG+VL++++PGLHFGDIH + AT
Sbjct: 615 AGKLLVTESYYLMGTVDPTGKLKQNEVCVILESGQISGDVLVYRNPGLHFGDIHVLKAT 673
Score = 51.2 bits (121), Expect(2) = 2e-43
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
VTTSN P+++ LS+ L+ALL+YGGVP E+F+D+L L
Sbjct: 518 VTTSNPPRRTKLSRNLVALLSYGGVPDEFFLDILRSTL 555
>ref|XP_009117513.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
[Brassica rapa]
Length = 1000
Score = 151 bits (381), Expect(2) = 2e-43
Identities = 69/119 (57%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ V +KRAA + A+ +G+MD++ AL+MI GIPL+EP+L+ HLS+L+ E+ LK
Sbjct: 547 LEESKTVFDNKRAAVRAARNYGDMDEYNALQMIMSGIPLDEPHLKDHLSILLNTEKNDLK 606
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKL V+E YYLMGTVDPTG L NEVCVIL++GQISG+VL++++PGLHFGDIH + AT
Sbjct: 607 AGKLLVTESYYLMGTVDPTGKLKQNEVCVILESGQISGDVLVYRNPGLHFGDIHVLKAT 665
Score = 51.2 bits (121), Expect(2) = 2e-43
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
VTTSN P+++ LS+ L+ALL+YGGVP E+F+D+L L
Sbjct: 510 VTTSNPPRRTKLSRNLVALLSYGGVPDEFFLDILRSTL 547
>emb|CDY13891.1| BnaA09g43930D [Brassica napus]
Length = 1000
Score = 151 bits (381), Expect(2) = 2e-43
Identities = 69/119 (57%), Positives = 97/119 (81%)
Frame = -3
Query: 357 IDDAQNVHSDKRAAWKVAQQHGEMDDFLALRMIACGIPLEEPYLRSHLSVLMREEQKSLK 178
+++++ V +KRAA + A+ +G+MD++ AL+MI GIPL+EP+L+ HLS+L+ E+ LK
Sbjct: 547 LEESKTVFDNKRAAVRAARNYGDMDEYNALQMIMSGIPLDEPHLKDHLSILLNTEKNDLK 606
Query: 177 GGKLPVSECYYLMGTVDPTGMLNANEVCVILDNGQISGNVLLFKHPGLHFGDIHRVTAT 1
GKL V+E YYLMGTVDPTG L NEVCVIL++GQISG+VL++++PGLHFGDIH + AT
Sbjct: 607 AGKLLVTESYYLMGTVDPTGKLKQNEVCVILESGQISGDVLVYRNPGLHFGDIHVLKAT 665
Score = 51.2 bits (121), Expect(2) = 2e-43
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = -1
Query: 467 VTTSNKPKKSYLSKYLIALLNYGGVPKEYFIDLLNMAL 354
VTTSN P+++ LS+ L+ALL+YGGVP E+F+D+L L
Sbjct: 510 VTTSNPPRRTKLSRNLVALLSYGGVPDEFFLDILRSTL 547