BLASTX nr result
ID: Cinnamomum24_contig00028869
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00028869
(344 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_013669013.1| PREDICTED: uncharacterized protein LOC106373... 59 5e-13
ref|XP_013738928.1| PREDICTED: uncharacterized protein LOC106441... 51 3e-12
ref|XP_009102231.1| PREDICTED: uncharacterized protein LOC103828... 61 4e-12
ref|XP_013689813.1| PREDICTED: uncharacterized protein LOC106393... 48 5e-12
ref|XP_009129032.1| PREDICTED: uncharacterized protein LOC103853... 54 7e-12
ref|XP_013645110.1| PREDICTED: uncharacterized protein LOC106349... 55 9e-12
ref|XP_013722070.1| PREDICTED: uncharacterized protein LOC106425... 54 1e-11
ref|XP_013739147.1| PREDICTED: B3 domain-containing protein REM1... 64 1e-11
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 56 2e-11
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 59 2e-11
ref|XP_010467884.1| PREDICTED: uncharacterized protein LOC104747... 60 2e-11
ref|XP_009140200.1| PREDICTED: putative ribonuclease H protein A... 50 4e-11
ref|XP_013665497.1| PREDICTED: uncharacterized protein LOC106369... 55 4e-11
ref|XP_009115101.1| PREDICTED: uncharacterized protein LOC103840... 58 4e-11
ref|XP_013646149.1| PREDICTED: uncharacterized protein LOC106350... 58 4e-11
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 55 5e-11
ref|XP_013720736.1| PREDICTED: uncharacterized protein LOC106424... 48 5e-11
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 58 5e-11
ref|XP_013651180.1| PREDICTED: uncharacterized protein LOC106355... 51 7e-11
ref|XP_010513002.1| PREDICTED: uncharacterized protein LOC104788... 59 9e-11
>ref|XP_013669013.1| PREDICTED: uncharacterized protein LOC106373384 [Brassica napus]
Length = 802
Score = 58.9 bits (141), Expect(3) = 5e-13
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +3
Query: 123 PR*RSSPDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGA 293
P PDG++A F++S W++VG D+ + V+ FF SG++P+ +NET+ ++P+ GA
Sbjct: 440 PEKAPGPDGFSACFFQSNWEVVGRDIIQEVQDFFKSGNMPRTINETHVRLIPKGTGA 496
Score = 33.5 bits (75), Expect(3) = 5e-13
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 LENHLPSLLDKCISDGDNESLIAIPS-EEIRQVTFSLGKDQAP 144
+E + + C+++ NE L AIPS EEI++ FS+ ++AP
Sbjct: 402 MEEVISKAIKPCVTNEQNEKLKAIPSAEEIKEALFSIHPEKAP 444
Score = 27.7 bits (60), Expect(3) = 5e-13
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYK 340
D+RPI+LCNV YK
Sbjct: 501 DYRPIALCNVYYK 513
>ref|XP_013738928.1| PREDICTED: uncharacterized protein LOC106441693 [Brassica napus]
Length = 493
Score = 50.8 bits (120), Expect(3) = 3e-12
Identities = 19/51 (37%), Positives = 34/51 (66%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGA 293
PDG++A+F++S W++VG + + ++ FF +GSLP N T ++P+ A
Sbjct: 404 PDGFSASFFQSNWEVVGPAIVQEIQLFFTTGSLPISANNTQVRLIPKSTDA 454
Score = 38.1 bits (87), Expect(3) = 3e-12
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 25 NHLPSLLDKCISDGDNESLIAIP-SEEIRQVTFSLGKDQAP 144
N + L+ CISD NESLI P + EI++ TFS+ D+AP
Sbjct: 362 NTIAEALNPCISDETNESLIKDPTAAEIKEATFSIHPDKAP 402
Score = 28.5 bits (62), Expect(3) = 3e-12
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCNV YKI
Sbjct: 459 DYRPIALCNVFYKI 472
>ref|XP_009102231.1| PREDICTED: uncharacterized protein LOC103828378 [Brassica rapa]
gi|923670281|ref|XP_013650434.1| PREDICTED:
uncharacterized protein LOC106354946 [Brassica napus]
Length = 1036
Score = 60.8 bits (146), Expect(3) = 4e-12
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGA 293
PDG++A+FY SFWDI+G DVC +R+FF + L NET+ ++ + +GA
Sbjct: 143 PDGFSASFYHSFWDIIGNDVCSDIRSFFDASCLNPRFNETHVRLIAKSKGA 193
Score = 30.0 bits (66), Expect(3) = 4e-12
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 31 LPSLLDKCISDGDNESLIAIPSE-EIRQVTFSLGKDQAP 144
+ ++ IS+ N SLIA P++ EI+ FS+ KD+AP
Sbjct: 103 ISEVITPVISEEMNSSLIARPTDDEIKTAVFSIHKDKAP 141
Score = 26.2 bits (56), Expect(3) = 4e-12
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LC+ YKI
Sbjct: 198 DYRPIALCSTHYKI 211
>ref|XP_013689813.1| PREDICTED: uncharacterized protein LOC106393683 [Brassica napus]
Length = 633
Score = 48.1 bits (113), Expect(3) = 5e-12
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGACRQT 305
PDG++A+F++S W++V + + ++ FF +GSLP N T ++P+ A + T
Sbjct: 81 PDGFSASFFQSNWEVVRPAIVQEIQLFFTTGSLPISANNTQVRLIPKSTEAKKVT 135
Score = 38.1 bits (87), Expect(3) = 5e-12
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 25 NHLPSLLDKCISDGDNESLIAIP-SEEIRQVTFSLGKDQAP 144
N + L+ CISD NESLI P + EI++ TFS+ D+AP
Sbjct: 39 NTIAEALNPCISDETNESLIKDPTAAEIKEATFSIHPDKAP 79
Score = 30.4 bits (67), Expect(3) = 5e-12
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 299 TDFRPISLCNVQYKI 343
TD+RPI+LCNV YKI
Sbjct: 135 TDYRPIALCNVFYKI 149
>ref|XP_009129032.1| PREDICTED: uncharacterized protein LOC103853884 [Brassica rapa]
Length = 1091
Score = 53.9 bits (128), Expect(3) = 7e-12
Identities = 22/53 (41%), Positives = 37/53 (69%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGACR 299
PDG++AAF+ S W++VG V K ++ FF SG+L +N T+ ++P+ +GA +
Sbjct: 194 PDGFSAAFFHSNWEVVGPAVIKEIQMFFISGNLAPDVNMTHVRLIPKIQGAAK 246
Score = 33.5 bits (75), Expect(3) = 7e-12
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 LDKCISDGDNESLIAIP-SEEIRQVTFSLGKDQAP 144
L CI+D NE L IP ++EI+ TF++ D+AP
Sbjct: 158 LRPCITDAHNEKLTEIPQAQEIKMATFTIHADKAP 192
Score = 28.9 bits (63), Expect(3) = 7e-12
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCN+ YKI
Sbjct: 249 DYRPIALCNIYYKI 262
>ref|XP_013645110.1| PREDICTED: uncharacterized protein LOC106349680 [Brassica napus]
Length = 1120
Score = 54.7 bits (130), Expect(3) = 9e-12
Identities = 21/53 (39%), Positives = 38/53 (71%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGACR 299
PDG++A+FY + W ++G D+ + V+ F SG+LP G+N+T+ ++P+ +G R
Sbjct: 415 PDGFSASFYHTHWSVIGPDLVEEVQAVFRSGTLPLGVNDTHVWMIPKIKGPQR 467
Score = 32.0 bits (71), Expect(3) = 9e-12
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 LDKCISDGDNESLIAIPSE-EIRQVTFSLGKDQAP 144
L ISD DN LIAIPS E+++ F++ ++AP
Sbjct: 379 LQPLISDEDNAGLIAIPSALEVKEAMFAINGEKAP 413
Score = 29.3 bits (64), Expect(3) = 9e-12
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 299 TDFRPISLCNVQYKI 343
+D+RPI+LCNV YK+
Sbjct: 469 SDYRPIALCNVYYKV 483
>ref|XP_013722070.1| PREDICTED: uncharacterized protein LOC106425894 [Brassica napus]
Length = 1194
Score = 53.5 bits (127), Expect(3) = 1e-11
Identities = 20/47 (42%), Positives = 35/47 (74%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPR 281
PDG++A+F+ S WD +G ++ + ++ FFA+GSLP +NET ++P+
Sbjct: 385 PDGFSASFFHSNWDSIGKEIVEEIQAFFATGSLPNRVNETFIRLIPK 431
Score = 32.7 bits (73), Expect(3) = 1e-11
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 LDKCISDGDNESLIAIP-SEEIRQVTFSLGKDQAP 144
L ISD +NE LI+ P S+EI+ FS+ D+AP
Sbjct: 349 LQPIISDPENEQLISPPTSQEIKDAVFSIHSDKAP 383
Score = 29.3 bits (64), Expect(3) = 1e-11
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCNV YKI
Sbjct: 440 DYRPIALCNVYYKI 453
>ref|XP_013739147.1| PREDICTED: B3 domain-containing protein REM13-like [Brassica napus]
Length = 540
Score = 63.9 bits (154), Expect(3) = 1e-11
Identities = 24/47 (51%), Positives = 35/47 (74%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPR 281
PDG+ AAFY FWD +G DVCKM+++FF +G + G+N TN ++P+
Sbjct: 427 PDGFTAAFYHQFWDSIGMDVCKMIKSFFETGVMETGINHTNICLIPK 473
Score = 27.3 bits (59), Expect(3) = 1e-11
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPISLC V YK+
Sbjct: 482 DYRPISLCTVAYKL 495
Score = 24.3 bits (51), Expect(3) = 1e-11
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +1
Query: 16 NLENHLPSLLDKCISDGDNESLIAIPSEEIRQVTFSLGKDQAP 144
+L++ LP++ K + ++ + + +EI++ +G D+AP
Sbjct: 383 SLDDVLPNIQPKVTMEMNDRLIAPVTDKEIKEALDLIGLDRAP 425
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 56.2 bits (134), Expect(3) = 2e-11
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPR 281
PDG N Y+ FW+ +G + +MV+ FF SGS+ +GMN+TN ++P+
Sbjct: 448 PDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPK 494
Score = 32.3 bits (72), Expect(3) = 2e-11
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 299 TDFRPISLCNVQYKI 343
TDFRPISLCNV YK+
Sbjct: 502 TDFRPISLCNVIYKV 516
Score = 26.2 bits (56), Expect(3) = 2e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 13 KNLENHLPSLLDKCISDGDNESLIA-IPSEEIRQVTFSLGKDQAP 144
+ LEN P +SD N +L+A I EE+++ TFS+ + P
Sbjct: 407 EELENLTP-----LVSDQMNNNLLAPITKEEVQRATFSINPHKCP 446
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 58.9 bits (141), Expect(3) = 2e-11
Identities = 25/59 (42%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = +3
Query: 120 LPR*RS-SPDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGA 293
+P+ +S PDGY + FYK+ W+I+G +V +++FFA G LP+G+N T ++P+K+ A
Sbjct: 186 MPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEA 244
Score = 29.3 bits (64), Expect(3) = 2e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 13 KNLENHLPSLLDKCISDGDNESLIAIPSEEIRQVTFSLGKDQAP 144
+ LEN LP +C D + EEI++V FS+ KD++P
Sbjct: 152 EELENLLPF---RCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSP 192
Score = 26.6 bits (57), Expect(3) = 2e-11
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 302 DFRPISLCNVQYK 340
D+RPIS CNV YK
Sbjct: 249 DYRPISCCNVLYK 261
>ref|XP_010467884.1| PREDICTED: uncharacterized protein LOC104747869 [Camelina sativa]
Length = 1160
Score = 60.5 bits (145), Expect(3) = 2e-11
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGA 293
PDGYNA FYK W IVG D V++FF +G LP+G+N T ++P+K+ A
Sbjct: 287 PDGYNAEFYKKSWSIVGNDFLVAVQSFFRTGFLPKGVNSTILALIPKKKKA 337
Score = 27.7 bits (60), Expect(3) = 2e-11
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPIS CNV YK+
Sbjct: 342 DYRPISCCNVLYKV 355
Score = 26.6 bits (57), Expect(3) = 2e-11
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 46 DKCISDGDNESLIAIPSEEIRQVTFSLGKDQAP 144
DKC N + + EE+R+V F++ +++P
Sbjct: 253 DKCTDSDKNLLIHEVTKEEVRRVLFAMPNNKSP 285
Score = 59.7 bits (143), Expect(2) = 9e-09
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKE 287
PDGYNA FYK W IVG D V++FF +G LP+G+N T ++P+K+
Sbjct: 190 PDGYNAEFYKKSWSIVGNDFLVAVQSFFRTGFLPKGVNSTILALIPKKK 238
Score = 26.6 bits (57), Expect(2) = 9e-09
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 10 RKNLENHLPSLLDKCISDGDNESLIAIPSEEIRQVTFSLGKDQAP 144
R+ LEN L KC N + + EE+R+V F++ +++P
Sbjct: 147 REELENILEH---KCTDSDKNLLIHEVTKEEVRRVLFAMPNNKSP 188
>ref|XP_009140200.1| PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 1086
Score = 50.1 bits (118), Expect(3) = 4e-11
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPR 281
PDG++A F+ + W+++G D+ + V+ FF + LP +NET ++P+
Sbjct: 197 PDGFSAGFFHAHWEVIGADIVREVQGFFETSKLPPSINETFIRLIPK 243
Score = 34.3 bits (77), Expect(3) = 4e-11
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 10 RKNLENHLPSLLDKCISDGDNESLIAIPS-EEIRQVTFSLGKDQAP 144
R +E+ + L +S +NE LI IP+ EEI+ FS+ D+AP
Sbjct: 150 RSAIEDVVDKALKPMVSSSENEKLIRIPTPEEIKTAVFSIHADKAP 195
Score = 29.3 bits (64), Expect(3) = 4e-11
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCNV YKI
Sbjct: 252 DYRPIALCNVYYKI 265
>ref|XP_013665497.1| PREDICTED: uncharacterized protein LOC106369956 [Brassica napus]
Length = 1054
Score = 55.1 bits (131), Expect(3) = 4e-11
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEG 290
PDG++A FY+S+W IVG DV K V+ FF+S L NET+ ++P+ G
Sbjct: 175 PDGFSATFYQSYWHIVGEDVVKDVKNFFSSSYLHPQQNETHIRLIPKITG 224
Score = 30.4 bits (67), Expect(3) = 4e-11
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 NLENHLPSLLDKCISDGDNESLIAIPSE-EIRQVTFSLGKDQAP 144
N + LL ++ NE+LIAIPS+ EIR+ S+ ++AP
Sbjct: 130 NSFTQIQGLLSNKVTPEMNEALIAIPSDSEIREAVMSINGNKAP 173
Score = 28.1 bits (61), Expect(3) = 4e-11
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCN YKI
Sbjct: 230 DYRPIALCNTHYKI 243
>ref|XP_009115101.1| PREDICTED: uncharacterized protein LOC103840357 [Brassica rapa]
Length = 918
Score = 58.2 bits (139), Expect(3) = 4e-11
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +3
Query: 123 PR*RSSPDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKE 287
P PDG + FY+ FW ++G D+ K V+ FFA+G L + +NETN ++P+ E
Sbjct: 23 PEKAPGPDGMTSLFYQKFWKVIGKDIVKTVQVFFATGELDERINETNICLIPKTE 77
Score = 33.5 bits (75), Expect(3) = 4e-11
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 281 ERRSL*TDFRPISLCNVQYKI 343
ER + T+FRPISLCNV YKI
Sbjct: 77 ERPTSMTEFRPISLCNVSYKI 97
Score = 21.9 bits (45), Expect(3) = 4e-11
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 70 NESLIAIPSEE-IRQVTFSLGKDQAP 144
N L PSEE IR+ F++ ++AP
Sbjct: 2 NSLLTKEPSEEEIREAAFAINPEKAP 27
>ref|XP_013646149.1| PREDICTED: uncharacterized protein LOC106350858 [Brassica napus]
Length = 915
Score = 58.2 bits (139), Expect(3) = 4e-11
Identities = 23/55 (41%), Positives = 35/55 (63%)
Frame = +3
Query: 123 PR*RSSPDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKE 287
P PDG + FY+ FW ++G D+ K V+ FFA+G L + +NETN ++P+ E
Sbjct: 23 PEKAPGPDGMTSLFYQKFWKVIGKDIVKTVQVFFATGELDERINETNICLIPKTE 77
Score = 33.5 bits (75), Expect(3) = 4e-11
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 281 ERRSL*TDFRPISLCNVQYKI 343
ER + T+FRPISLCNV YKI
Sbjct: 77 ERPTSMTEFRPISLCNVSYKI 97
Score = 21.9 bits (45), Expect(3) = 4e-11
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 70 NESLIAIPSEE-IRQVTFSLGKDQAP 144
N L PSEE IR+ F++ ++AP
Sbjct: 2 NSLLTKEPSEEEIREAAFAINPEKAP 27
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 54.7 bits (130), Expect(3) = 5e-11
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEG 290
PDG+ A FY S+W I+ DV + +R FF S + P+ MNET+ ++P+ G
Sbjct: 343 PDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLG 392
Score = 30.4 bits (67), Expect(3) = 5e-11
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 LDKCISDGDNESLIAIPS-EEIRQVTFSLGKDQAP 144
++ +S GDN+ L IP+ EE++ FS+ +AP
Sbjct: 307 IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAP 341
Score = 28.1 bits (61), Expect(3) = 5e-11
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCN+ YKI
Sbjct: 398 DYRPIALCNIFYKI 411
>ref|XP_013720736.1| PREDICTED: uncharacterized protein LOC106424515 [Brassica napus]
Length = 1142
Score = 48.1 bits (113), Expect(3) = 5e-11
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPR 281
PDG++AAFY++ W +G D+ V+ FF LP +N+T+ ++P+
Sbjct: 341 PDGFSAAFYQTHWQDIGPDIVAEVQHFFERDMLPDNINDTHIRLIPK 387
Score = 35.8 bits (81), Expect(3) = 5e-11
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 NLENHLPSLLDKCISDGDNESLIAIPSE-EIRQVTFSLGKDQAP 144
N E + L +S+ +NE LIA PSE EIR FS+ D+AP
Sbjct: 296 NKEETVRKALKPMVSEEENEKLIATPSEQEIRDALFSIHADKAP 339
Score = 29.3 bits (64), Expect(3) = 5e-11
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPI+LCNV YKI
Sbjct: 396 DYRPITLCNVYYKI 409
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 57.8 bits (138), Expect(3) = 5e-11
Identities = 23/51 (45%), Positives = 35/51 (68%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGA 293
PDGY A FYK W+I+G + +++FFA G LP+G+N T ++P+K+ A
Sbjct: 361 PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEA 411
Score = 27.7 bits (60), Expect(3) = 5e-11
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 31 LPSLLDKCISDGDNESLIA-IPSEEIRQVTFSLGKDQAP 144
L LL SD D E L + +EEI +V FS+ D++P
Sbjct: 321 LQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSP 359
Score = 27.7 bits (60), Expect(3) = 5e-11
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
D+RPIS CNV YK+
Sbjct: 416 DYRPISCCNVLYKV 429
>ref|XP_013651180.1| PREDICTED: uncharacterized protein LOC106355849 [Brassica napus]
Length = 1321
Score = 51.2 bits (121), Expect(3) = 7e-11
Identities = 17/47 (36%), Positives = 34/47 (72%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPR 281
PDG++ +F+ + WD +G D+ K ++ FF +G LP+ +N+T+ ++P+
Sbjct: 425 PDGFSGSFFHTNWDNIGADIVKEIQLFFTTGVLPERINDTHIRLIPK 471
Score = 33.9 bits (76), Expect(3) = 7e-11
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 NLENHLPSLLDKCISDGDNESLIAIPSE-EIRQVTFSLGKDQAP 144
N E + L +SD +NE LI++PS EI++ FS+ D+AP
Sbjct: 380 NREETVSYALAPMVSDEENERLISLPSPLEIKEAAFSIHADKAP 423
Score = 27.7 bits (60), Expect(3) = 7e-11
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
++RPI+LCNV YKI
Sbjct: 480 EYRPIALCNVYYKI 493
>ref|XP_010513002.1| PREDICTED: uncharacterized protein LOC104788940 [Camelina sativa]
Length = 1347
Score = 58.5 bits (140), Expect(3) = 9e-11
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 141 PDGYNAAFYKSFWDIVGGDVCKMVRTFFASGSLPQGMNETNTDIVPRKEGACRQTSAPLA 320
PDG+NAAFY+ +WD+VG + V+ FF +G + Q N TN ++P+ + + P+A
Sbjct: 422 PDGFNAAFYQHYWDVVGPAIISEVKNFFTTGEMQQEWNHTNLCLIPKNDPKTMKDFRPIA 481
Score = 30.4 bits (67), Expect(3) = 9e-11
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 302 DFRPISLCNVQYKI 343
DFRPI+LCNV YKI
Sbjct: 476 DFRPIALCNVTYKI 489
Score = 23.5 bits (49), Expect(3) = 9e-11
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 70 NESLIA-IPSEEIRQVTFSLGKDQAP 144
N+ L++ + EEIR FS+G +AP
Sbjct: 395 NKLLVSDVTDEEIRSALFSIGATRAP 420