BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00026399
         (1489 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   536   e-149
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   536   e-149
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   535   e-149
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   515   e-143
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl...   511   e-142
ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chl...   509   e-141
gb|KHG01344.1| hypothetical protein F383_22314 [Gossypium arboreum]   503   e-139
ref|XP_012444688.1| PREDICTED: RNA pseudouridine synthase 2, chl...   502   e-139
gb|KCW70505.1| hypothetical protein EUGRSUZ_F03712 [Eucalyptus g...   501   e-139
ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chl...   500   e-138
ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chl...   500   e-138
ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl...   499   e-138
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl...   499   e-138
ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chl...   499   e-138
ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chl...   499   e-138
ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chl...   498   e-138
ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chl...   498   e-138
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   494   e-137
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   494   e-137
ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chl...   492   e-136

>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  536 bits (1382), Expect = e-149
 Identities = 277/379 (73%), Positives = 308/379 (81%), Gaps = 1/379 (0%)
 Frame = -1

Query: 1267 GNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHV 1088
            GN+AGV L++TV    S KSR+DSWISSRI G+SRAR+QSSI+SGLVSVNGR I KVSHV
Sbjct: 63   GNFAGVCLEDTVEIS-SVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHV 121

Query: 1087 VKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNG 908
            ++AGDKV+CTI ELQPLRAEPEDIPLDIVYED  +LVVNKPAHMVVHPAPGNANGTLVNG
Sbjct: 122  IRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNG 181

Query: 907  ILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLD 728
            ILHHCSLP  A  NS + SET+                  E++SN+C  SVRPGIVHRLD
Sbjct: 182  ILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLD 241

Query: 727  KGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIR 548
            KGTSGLLVVAKDEHSHA LSEQFK HTI R+YLSLT GVPS + GRI +PI RD +NRIR
Sbjct: 242  KGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIR 301

Query: 547  MAAV-SDTSNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGD 371
            MAAV S  S+R ARHAASRYRV+E+LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLGD
Sbjct: 302  MAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGD 361

Query: 370  EVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPP 191
            EVYGGT+NMALSLLR R+              LQRPCLHAFTLGFKHPHT E+MQFSCPP
Sbjct: 362  EVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPP 421

Query: 190  PADFAELLSELRAISTKKV 134
            PADF E+LS+LR+I  +KV
Sbjct: 422  PADFTEVLSQLRSIGIEKV 440


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  536 bits (1381), Expect = e-149
 Identities = 278/385 (72%), Positives = 310/385 (80%), Gaps = 1/385 (0%)
 Frame = -1

Query: 1267 GNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHV 1088
            GN+AGV L++TV    S KSR+DSWISSRI G+SRAR+QSSI+SGLVSVNGR I KVSHV
Sbjct: 63   GNFAGVCLEDTVEIS-SVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHV 121

Query: 1087 VKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNG 908
            ++AGDKV+CTI ELQPLRAEPEDIPLDIVYED  +LVVNKPAHMVVHPAPGNANGTLVNG
Sbjct: 122  IRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNG 181

Query: 907  ILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLD 728
            ILHHCSLP  A  NS + SET+                  E++SN+C  SVRPGIVHRLD
Sbjct: 182  ILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLD 241

Query: 727  KGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIR 548
            KGTSGLLVVAKDEHSHA LSEQFK HTI R+YLSLT GVPS + GRI +PI RD +NRIR
Sbjct: 242  KGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIR 301

Query: 547  MAAV-SDTSNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGD 371
            MAAV S  S+R ARHAASRYRV+E+LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLGD
Sbjct: 302  MAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGD 361

Query: 370  EVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPP 191
            EVYGGT+NMALSLLR R+              LQRPCLHAFTLGFKHPHT E+MQFSCPP
Sbjct: 362  EVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPP 421

Query: 190  PADFAELLSELRAISTKKVIYQCAS 116
            PADF E+LS+LR+I  +K I +  S
Sbjct: 422  PADFTEVLSQLRSIGIEKNILKIQS 446


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  535 bits (1378), Expect = e-149
 Identities = 276/378 (73%), Positives = 307/378 (81%), Gaps = 1/378 (0%)
 Frame = -1

Query: 1267 GNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHV 1088
            GN+AGV L++TV    S KSR+DSWISSRI G+SRAR+QSSI+SGLVSVNGR I KVSHV
Sbjct: 63   GNFAGVCLEDTVEIS-SVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHV 121

Query: 1087 VKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNG 908
            ++AGDKV+CTI ELQPLRAEPEDIPLDIVYED  +LVVNKPAHMVVHPAPGNANGTLVNG
Sbjct: 122  IRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNG 181

Query: 907  ILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLD 728
            ILHHCSLP  A  NS + SET+                  E++SN+C  SVRPGIVHRLD
Sbjct: 182  ILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLD 241

Query: 727  KGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIR 548
            KGTSGLLVVAKDEHSHA LSEQFK HTI R+YLSLT GVPS + GRI +PI RD +NRIR
Sbjct: 242  KGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIR 301

Query: 547  MAAV-SDTSNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGD 371
            MAAV S  S+R ARHAASRYRV+E+LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLGD
Sbjct: 302  MAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGD 361

Query: 370  EVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPP 191
            EVYGGT+NMALSLLR R+              LQRPCLHAFTLGFKHPHT E+MQFSCPP
Sbjct: 362  EVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPP 421

Query: 190  PADFAELLSELRAISTKK 137
            PADF E+LS+LR+I  +K
Sbjct: 422  PADFTEVLSQLRSIGIEK 439


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  515 bits (1326), Expect = e-143
 Identities = 273/390 (70%), Positives = 304/390 (77%), Gaps = 2/390 (0%)
 Frame = -1

Query: 1297 SQPNHNHPVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVN 1118
            S   +N   + NYAGV+L+ETV  K  K  RLD+WISSRI G+SRAR+QSSIRSGLVS+N
Sbjct: 43   SSGGNNREPIANYAGVQLEETVDTKAGKL-RLDAWISSRIDGISRARVQSSIRSGLVSIN 101

Query: 1117 GRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAP 938
            G+ +SKVSH VK GD V+CTISELQPLRAE EDIPLDIVYED ++LVVNKPAHMVVHPAP
Sbjct: 102  GQVVSKVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAP 161

Query: 937  GNANGTLVNGILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDS 758
            GNA GTLVNGILHHCSLPT A  N + FS+ E                  E SS++   S
Sbjct: 162  GNATGTLVNGILHHCSLPTLASSNQEAFSDAE------------DISDDEEFSSSISGAS 209

Query: 757  VRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIP 578
            +RPGIVHRLDKGTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVPS S GRI +P
Sbjct: 210  IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 269

Query: 577  ISRDSNNRIRMAAVSDTSNRH--ARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAH 404
            ISRD NNRIRMAA+   SN+H  ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAH
Sbjct: 270  ISRDPNNRIRMAAIPG-SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAH 328

Query: 403  AKYLGIPLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPH 224
            AKY+GIPLLGDEVYGGTKNMA SLL+ RT              LQRPCLHA  LGF HPH
Sbjct: 329  AKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPH 388

Query: 223  TDEDMQFSCPPPADFAELLSELRAISTKKV 134
            T E +QFSCPPPADFAE+LS+LR I T+K+
Sbjct: 389  TREKIQFSCPPPADFAEILSQLREIGTEKL 418


>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Elaeis guineensis]
          Length = 449

 Score =  511 bits (1315), Expect = e-142
 Identities = 284/450 (63%), Positives = 317/450 (70%), Gaps = 4/450 (0%)
 Frame = -1

Query: 1486 RERMVLSFLPASSPSATPCXXXXXXXXXXXXXXXXXRCTRVFKLLCXXXXXXXXXXXXTP 1307
            RERMV   LPA+  S+                       RV K LC             P
Sbjct: 10   RERMVSLSLPAAGSSSQLSFSLDLLRRDPRD--------RVSKALCSSTSTSSRDSNPEP 61

Query: 1306 VDRSQPNHNHPVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1127
              R Q      + GN+AG+RL+E V    ++K+RLDSWISSRI  VSRARIQSSIRSGLV
Sbjct: 62   FQRQQ----RVITGNHAGLRLEERVEIG-AEKTRLDSWISSRIETVSRARIQSSIRSGLV 116

Query: 1126 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 947
            +VNGRT+ KVSH++K GD V CT+SELQPLRAE EDIPLDIVYEDAH+LVVNKPAHMVVH
Sbjct: 117  TVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVH 176

Query: 946  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSETE---YXXXXXXXXXXXXXXXXXEISS 776
            PAPGNANGTLVN ILHHC LPT A  N    SE+E                      ISS
Sbjct: 177  PAPGNANGTLVNAILHHCRLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISS 236

Query: 775  NVCNDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSY 596
                  VRPGIVHRLDKGTSGLLVVAKDEHSHA L+EQFK HTI RVY+SLT GVP+PS 
Sbjct: 237  ENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSS 296

Query: 595  GRIAIPISRDSNNRIRMAAVSDTSN-RHARHAASRYRVIEILADGGSALLEWRLETGRTH 419
            GRI IPI+RDSNNRIRMAAV  TSN RHAR+AASRY+VIE+L  GGSAL+EWRLETGRTH
Sbjct: 297  GRIEIPIARDSNNRIRMAAVLGTSNSRHARYAASRYKVIELLGRGGSALVEWRLETGRTH 356

Query: 418  QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLG 239
            QIRAHAKY+GIPLLGDEVYGGTK+MALSLLR RT              LQRPCLHA +LG
Sbjct: 357  QIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSSHHGHLSQILSKLQRPCLHASSLG 416

Query: 238  FKHPHTDEDMQFSCPPPADFAELLSELRAI 149
            FKHPHT E ++FSCPPP DFAE+L +L++I
Sbjct: 417  FKHPHTGEYLRFSCPPPDDFAEVLDQLQSI 446


>ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] gi|302141717|emb|CBI18920.3| unnamed
            protein product [Vitis vinifera]
          Length = 433

 Score =  509 bits (1310), Expect = e-141
 Identities = 269/383 (70%), Positives = 295/383 (77%), Gaps = 7/383 (1%)
 Frame = -1

Query: 1264 NYAGVRLQETVV--NKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSH 1091
            NYAGVRL+ETVV  N  S K RLDSWISSRI G+SRAR+QSSIRSGLVSVN R + KVSH
Sbjct: 57   NYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSH 116

Query: 1090 VVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVN 911
            V++AGDKV+CTISELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA+GTLVN
Sbjct: 117  VIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVN 176

Query: 910  GILHHCSLPTAAFPN----SDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGI 743
            GILHHCSLPT A PN     D  S+ E+                   +   C  ++RPGI
Sbjct: 177  GILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQ------------NCGTCETNIRPGI 224

Query: 742  VHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDS 563
            VHRLDKGTSGLLVVAKDEHSHA LSEQFK H+I RVY+SLT GVP+P  GR+ IP+ RD 
Sbjct: 225  VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDP 284

Query: 562  NNRIRMAAVSDTSNR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGI 386
            NNRIRM AV   SN   ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKYLGI
Sbjct: 285  NNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGI 344

Query: 385  PLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQ 206
            PLLGDEVYGGTKNMALSLLR R P             L RPCLHA  LGF HP T +++ 
Sbjct: 345  PLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVH 404

Query: 205  FSCPPPADFAELLSELRAISTKK 137
            FSC PP DFAE+LS LR IST+K
Sbjct: 405  FSCQPPEDFAEILSWLRKISTEK 427


>gb|KHG01344.1| hypothetical protein F383_22314 [Gossypium arboreum]
          Length = 446

 Score =  503 bits (1295), Expect = e-139
 Identities = 259/392 (66%), Positives = 295/392 (75%), Gaps = 1/392 (0%)
 Frame = -1

Query: 1306 VDRSQPNHNHPVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1127
            +  S   H  P   +YAGV+L+ETV      K RLDSWISSRI G+SRAR+QSSI+SGLV
Sbjct: 46   ISTSAAKHEEPTRTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLV 105

Query: 1126 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 947
             VNGR + KVSH ++AGDKV+C IS+LQPL+AEPEDIPLDIV+ED H+LVVNKP+HMVVH
Sbjct: 106  KVNGRVVDKVSHSLRAGDKVNCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVH 165

Query: 946  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVC 767
            PAPGNANGTLVNGILHHCSLPT A    ++  +TE                     ++  
Sbjct: 166  PAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTE---------DMSDDEQDIFHGASAG 216

Query: 766  NDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRI 587
              SVRPGIVHRLDKGTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVPS S GR+
Sbjct: 217  AASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSASAGRV 276

Query: 586  AIPISRDSNNRIRMAAVSDTSNR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIR 410
             IPI RDSNNRIRM AV   S+   ARHAASRY+VIE+LA GGSAL++WRLETGRTHQIR
Sbjct: 277  DIPIGRDSNNRIRMVAVPGLSHHGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIR 336

Query: 409  AHAKYLGIPLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKH 230
            AHAKY+GIPLLGDEVYGGTKNMALSLLR RTP             L+RP LHA  LGF+H
Sbjct: 337  AHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEH 396

Query: 229  PHTDEDMQFSCPPPADFAELLSELRAISTKKV 134
            PH+ E M+FSCPPP DF E+L+ LR I  +KV
Sbjct: 397  PHSGEKMRFSCPPPPDFGEILNHLRKIGIEKV 428


>ref|XP_012444688.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Gossypium
            raimondii]
          Length = 432

 Score =  502 bits (1292), Expect = e-139
 Identities = 258/393 (65%), Positives = 296/393 (75%), Gaps = 1/393 (0%)
 Frame = -1

Query: 1306 VDRSQPNHNHPVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1127
            +  S   H  P+  +YAGV+L+ETV      K RLDSWISSRI G+SRAR+QSSI+SGLV
Sbjct: 46   ISTSATKHEEPIRTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLV 105

Query: 1126 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 947
             VNGR + KVSH ++AGDKVDC IS+LQPL+AEPEDIPLDIV+ED H+LVVNKP+HMVVH
Sbjct: 106  KVNGRVVDKVSHSLRAGDKVDCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVH 165

Query: 946  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVC 767
            PAPGNANGTLVNGILHHCSLPT A    ++  +TE                     ++  
Sbjct: 166  PAPGNANGTLVNGILHHCSLPTVASSEKEVLFDTE---------DMSDDEQDIFHGASAG 216

Query: 766  NDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRI 587
              SVRPGIVHRLDKGTSGLLVVAKDE+SHA LSEQFK HTI RVY+SLT GVPS + GR+
Sbjct: 217  AASVRPGIVHRLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIQRVYISLTCGVPSAASGRV 276

Query: 586  AIPISRDSNNRIRMAAVSDTSNR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIR 410
             IPI RDSNNRIRM AV   S+   ARHAASRY+VIE+LA GGSAL++WRLETGRTHQIR
Sbjct: 277  DIPIGRDSNNRIRMVAVPGLSHHGQARHAASRYKVIEVLAGGGSALVQWRLETGRTHQIR 336

Query: 409  AHAKYLGIPLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKH 230
            AHAKY+GIPLLGDEVYGGTKNMALSLLR RTP             L+RP LHA  LGF+H
Sbjct: 337  AHAKYMGIPLLGDEVYGGTKNMALSLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEH 396

Query: 229  PHTDEDMQFSCPPPADFAELLSELRAISTKKVI 131
            PH+ E M+FSCPPP DF E+L+ LR I  +K I
Sbjct: 397  PHSGEKMRFSCPPPPDFGEILNHLRKIGIEKPI 429


>gb|KCW70505.1| hypothetical protein EUGRSUZ_F03712 [Eucalyptus grandis]
          Length = 462

 Score =  501 bits (1289), Expect = e-139
 Identities = 259/378 (68%), Positives = 295/378 (78%), Gaps = 1/378 (0%)
 Frame = -1

Query: 1261 YAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVK 1082
            YAGVRL+ETV      K RLD+WISSRI GVSRAR+QSSIRSGLVSVNGR + KVSH V+
Sbjct: 67   YAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVR 126

Query: 1081 AGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGIL 902
            AGD VDCTISELQPLRAEPEDIP+DIVYED H+LVVNKPAHMVVHPAPGNA+GTLVN IL
Sbjct: 127  AGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAIL 186

Query: 901  HHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDKG 722
            HHCSLPT AF  +++ SE E                    +S+    SVRPGIVHRLDKG
Sbjct: 187  HHCSLPTVAFSETELLSEGEDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLDKG 246

Query: 721  TSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRMA 542
            TSGLLVVAK+E SHA LSEQFK HTI RVY+SLT GVPS + GRI +PI RD+NNRIRM+
Sbjct: 247  TSGLLVVAKNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMS 306

Query: 541  AVSDTSN-RHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEV 365
            A+   SN R AR+AASRY+VIE+LA G SAL+EWRLETGRTHQIRAHAKY+GIPLLGDEV
Sbjct: 307  AIPGPSNGRQARYAASRYKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEV 366

Query: 364  YGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPA 185
            YGGTKNM LSLL+A+ P             L+RPCLHA +LGF HP+T E++QFSC PP 
Sbjct: 367  YGGTKNMILSLLQAKLPIGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPE 426

Query: 184  DFAELLSELRAISTKKVI 131
            DF+E+L +LR +  KKVI
Sbjct: 427  DFSEILCQLRRLGMKKVI 444


>ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  500 bits (1288), Expect = e-138
 Identities = 257/379 (67%), Positives = 298/379 (78%), Gaps = 1/379 (0%)
 Frame = -1

Query: 1264 NYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVV 1085
            NY+GV+L+ETV +K  K  RLDSW+SSRI GVSRAR+QSSIRSGLVSVNGR   KVSH+V
Sbjct: 54   NYSGVKLEETVDSKTGKL-RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMV 112

Query: 1084 KAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGI 905
            K GDKVDCTI++L+PLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA GTLV+GI
Sbjct: 113  KGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGI 172

Query: 904  LHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDK 725
            LHHCSLPT +FP  ++ S+ E                  + SS +C  SVRPGIVHRLDK
Sbjct: 173  LHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDK 232

Query: 724  GTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRM 545
            GTSGLLVVAK+EHS A L+EQFK HTI RVY+S+T GVP+   GR+ IPI RDSNNRIRM
Sbjct: 233  GTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRM 292

Query: 544  AAVSDT-SNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDE 368
            AA+  T  +  +RHA SRY+VIE LA GGSAL+EWRLETGRTHQIRAHAK+LGIPL+GDE
Sbjct: 293  AAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDE 352

Query: 367  VYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPP 188
            VYGGTKNMALSLL+ +TP             + RPCLHA TLGF+HP T E++ F+  PP
Sbjct: 353  VYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPP 412

Query: 187  ADFAELLSELRAISTKKVI 131
             DFAE+LSELRAI T+KV+
Sbjct: 413  PDFAEILSELRAIKTEKVL 431


>ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  500 bits (1287), Expect = e-138
 Identities = 257/380 (67%), Positives = 298/380 (78%), Gaps = 1/380 (0%)
 Frame = -1

Query: 1264 NYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVV 1085
            NY+GV+L+ETV +K  K  RLDSW+SSRI GVSRAR+QSSIRSGLVSVNGR   KVSH+V
Sbjct: 54   NYSGVKLEETVDSKTGKL-RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMV 112

Query: 1084 KAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGI 905
            K GDKVDCTI++L+PLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA GTLV+GI
Sbjct: 113  KGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGI 172

Query: 904  LHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDK 725
            LHHCSLPT +FP  ++ S+ E                  + SS +C  SVRPGIVHRLDK
Sbjct: 173  LHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDK 232

Query: 724  GTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRM 545
            GTSGLLVVAK+EHS A L+EQFK HTI RVY+S+T GVP+   GR+ IPI RDSNNRIRM
Sbjct: 233  GTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRM 292

Query: 544  AAVSDT-SNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDE 368
            AA+  T  +  +RHA SRY+VIE LA GGSAL+EWRLETGRTHQIRAHAK+LGIPL+GDE
Sbjct: 293  AAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDE 352

Query: 367  VYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPP 188
            VYGGTKNMALSLL+ +TP             + RPCLHA TLGF+HP T E++ F+  PP
Sbjct: 353  VYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPP 412

Query: 187  ADFAELLSELRAISTKKVIY 128
             DFAE+LSELRAI T+KV +
Sbjct: 413  PDFAEILSELRAIKTEKVTH 432


>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Musa
            acuminata subsp. malaccensis]
            gi|695071322|ref|XP_009382728.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Musa acuminata
            subsp. malaccensis]
          Length = 440

 Score =  499 bits (1286), Expect = e-138
 Identities = 259/391 (66%), Positives = 301/391 (76%), Gaps = 4/391 (1%)
 Frame = -1

Query: 1306 VDRSQPNHNHPVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1127
            +D   P     +  N+AGVRL+E V    ++K+R+DSWISSRI GVSRARIQSSIRSGLV
Sbjct: 45   LDPESPPPRGEIRVNHAGVRLEERV-EVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLV 103

Query: 1126 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 947
            +VNGRT++KVSH++K GD V C IS+L PL+AEPED+PLDIVYED H++VVNKPAHMVVH
Sbjct: 104  AVNGRTVNKVSHIIKGGDMVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVH 163

Query: 946  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVC 767
            PAPGNANGTLVN ILHHC LP  AF N+   S+TE                   +     
Sbjct: 164  PAPGNANGTLVNAILHHCRLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGI 223

Query: 766  NDS---VRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSY 596
             +    VRPGIVHRLDKGTSGLLVVAKD+HSHA L+EQFK HTI RVY+SLT GVP+PSY
Sbjct: 224  ENYEALVRPGIVHRLDKGTSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSY 283

Query: 595  GRIAIPISRDSNNRIRMAAVSDTSN-RHARHAASRYRVIEILADGGSALLEWRLETGRTH 419
            GRI IPI+RDSNNRIRM AVS  +N RHAR+AASRY+VIE    GG+AL++WRLETGRTH
Sbjct: 284  GRIEIPIARDSNNRIRMVAVSGLNNSRHARYAASRYKVIEDFMGGGAALVQWRLETGRTH 343

Query: 418  QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLG 239
            QIRAHAKYLGIPLLGDEVYGGTK+MALSLLR RTP             LQRPCLHAF++G
Sbjct: 344  QIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRTPPTYHGHLSNIISKLQRPCLHAFSIG 403

Query: 238  FKHPHTDEDMQFSCPPPADFAELLSELRAIS 146
            FKHPHT E +QFSCPPP DF+++L +LR+IS
Sbjct: 404  FKHPHTGEFLQFSCPPPDDFSKVLDQLRSIS 434


>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Phoenix dactylifera]
          Length = 439

 Score =  499 bits (1286), Expect = e-138
 Identities = 270/413 (65%), Positives = 307/413 (74%), Gaps = 5/413 (1%)
 Frame = -1

Query: 1369 RVFKLLCXXXXXXXXXXXXTPVDRSQPNHNHPVL-GNYAGVRLQETVVNKLSKKSRLDSW 1193
            RV K LC             P     P     VL GN+AG+RL+E+V    ++K+RLDSW
Sbjct: 30   RVSKALCSSPTTSSRDSNPEP----SPQRPQRVLRGNHAGLRLEESVEIG-AEKTRLDSW 84

Query: 1192 ISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIP 1013
            ISSRI GVSRARIQSSIRSG V VNGRT+ KVSH++K GD V CT+SELQPLRA+ EDIP
Sbjct: 85   ISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAKAEDIP 144

Query: 1012 LDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPTAAFPNSDIFSETE--- 842
            LDIVYEDA++LVVNKPAHMVVHPAPGN NGTLV+ ILHHC LPT A  ++   SE+E   
Sbjct: 145  LDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHCRLPTIACVSNSKNSESEECS 204

Query: 841  YXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQ 662
                               +SS      VRPGIVHRLDKGTSGLLVVAKDEHSHA L+EQ
Sbjct: 205  ESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQ 264

Query: 661  FKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRMAAVSDTSN-RHARHAASRYRV 485
            FK HTI RVY+SLT GVP+PS GRI IPI+RDSNNRIRMAAVS TSN RHAR+AASRY+V
Sbjct: 265  FKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMAAVSGTSNSRHARYAASRYKV 324

Query: 484  IEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRARTPXXX 305
            I++L  GGS+L+EWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MALSLLR RT    
Sbjct: 325  IKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTSSSH 384

Query: 304  XXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPADFAELLSELRAIS 146
                      +QRPCLHA  LGFKHPHT E ++FSCPPP DFAE+L +L++IS
Sbjct: 385  HGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQSIS 437


>ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Tarenaya hassleriana]
          Length = 435

 Score =  499 bits (1285), Expect = e-138
 Identities = 264/382 (69%), Positives = 293/382 (76%), Gaps = 7/382 (1%)
 Frame = -1

Query: 1258 AGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVKA 1079
            AGV+ QETV +  + K RLDSWISSR+HGVSRAR+QSSIR GLV VNGR + KVSH VKA
Sbjct: 69   AGVKFQETV-DVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDKVSHNVKA 127

Query: 1078 GDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGILH 899
            GD V CTISELQPL+AEPED+PLDIVYED H+LVVNKPAHMVVHPAPGN NGTLVNGILH
Sbjct: 128  GDMVSCTISELQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGTLVNGILH 187

Query: 898  HCSLPTAAF------PNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVH 737
            HCSLP  A+      P+ + FSE E                   +SS+  + SVRPGIVH
Sbjct: 188  HCSLPIVAYSDTEVDPDEEDFSEDE-----------------ETMSSSAYSASVRPGIVH 230

Query: 736  RLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNN 557
            RLDKGTSGLLVVAKDEHSHA L+EQFK HTI RVY+SLT GVPSPS+GRI IPI RD NN
Sbjct: 231  RLDKGTSGLLVVAKDEHSHAHLAEQFKQHTIERVYVSLTCGVPSPSHGRIVIPIGRDLNN 290

Query: 556  RIRMAAVSDTSNR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPL 380
            RIRMAA+   SNR  ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+G+PL
Sbjct: 291  RIRMAAIPGLSNRGRARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYVGVPL 350

Query: 379  LGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFS 200
            LGDEVYG TK+MALSLL+ R               L RPCLHA  LGFKHP T ED++FS
Sbjct: 351  LGDEVYGATKSMALSLLQKRASRNDHGQILELVSRLDRPCLHALVLGFKHPCTGEDVKFS 410

Query: 199  CPPPADFAELLSELRAISTKKV 134
            CPPP DFAE L  LR + T+KV
Sbjct: 411  CPPPPDFAETLGMLRKLGTEKV 432


>ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  499 bits (1284), Expect = e-138
 Identities = 259/379 (68%), Positives = 297/379 (78%), Gaps = 1/379 (0%)
 Frame = -1

Query: 1264 NYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVV 1085
            NY+GV+L+ETV  K  K  RLDSW+SSRI+G+SRAR+QSSIRSGLVSVNGR   KVSH V
Sbjct: 54   NYSGVKLEETVDVKTGKL-RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTV 112

Query: 1084 KAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGI 905
            K GDKV+CTI++L+PLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA GTLV+GI
Sbjct: 113  KGGDKVNCTIADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGI 172

Query: 904  LHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDK 725
            LHHCSLPT +FP  ++ S+ E                    SS VC  SVRPGIVHRLDK
Sbjct: 173  LHHCSLPTVSFPGEEVLSDVEDDSDDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDK 232

Query: 724  GTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRM 545
            GTSGLLVVAK E S A L+EQFK HTI RVY+S+T GVP+   GRI IPI RDSNNRIRM
Sbjct: 233  GTSGLLVVAKTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRM 292

Query: 544  AAVSDT-SNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDE 368
             A+  +     AR+AASRY+VIE LA GGSAL+EWRLETGRTHQIRAHAKYLGIPLLGDE
Sbjct: 293  IAIPGSHKGGRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDE 352

Query: 367  VYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPP 188
            VYGGTKNMALSLL+ +TP             ++RPCLHA TLGF+HP+T E++ F+  PP
Sbjct: 353  VYGGTKNMALSLLQPKTPPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPP 412

Query: 187  ADFAELLSELRAISTKKVI 131
            ADFAE+LSELRAIST+KV+
Sbjct: 413  ADFAEVLSELRAISTEKVL 431


>ref|XP_010935175.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Elaeis guineensis]
          Length = 445

 Score =  498 bits (1281), Expect = e-138
 Identities = 280/450 (62%), Positives = 313/450 (69%), Gaps = 4/450 (0%)
 Frame = -1

Query: 1486 RERMVLSFLPASSPSATPCXXXXXXXXXXXXXXXXXRCTRVFKLLCXXXXXXXXXXXXTP 1307
            RERMV   LPA+  S+                       RV K LC             P
Sbjct: 10   RERMVSLSLPAAGSSSQLSFSLDLLRRDPRD--------RVSKALCSSTSTSSRDSNPEP 61

Query: 1306 VDRSQPNHNHPVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLV 1127
              R Q      + GN+AG+RL+E V    ++K+RLDSWISSRI  VSRARIQSSIRSGLV
Sbjct: 62   FQRQQ----RVITGNHAGLRLEERVEIG-AEKTRLDSWISSRIETVSRARIQSSIRSGLV 116

Query: 1126 SVNGRTISKVSHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVH 947
            +VNGRT+ KVSH++K GD V CT+SELQPLRAE EDIPLDIVYEDAH+LVVNKPAHMVVH
Sbjct: 117  TVNGRTVDKVSHIIKGGDMVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVH 176

Query: 946  PAPGNANGTLVNGILHHCSLPTAAFPNSDIFSETE---YXXXXXXXXXXXXXXXXXEISS 776
            PAPGNANGTLVN ILHHC LPT A  N    SE+E                      ISS
Sbjct: 177  PAPGNANGTLVNAILHHCRLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISS 236

Query: 775  NVCNDSVRPGIVHRLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSY 596
                  VRPGIVHRLDKGTSGLLVVAKDEHSHA L+EQFK HTI RVY+SLT GVP+PS 
Sbjct: 237  ENSEALVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSS 296

Query: 595  GRIAIPISRDSNNRIRMAAVSDTSN-RHARHAASRYRVIEILADGGSALLEWRLETGRTH 419
            GRI IPI+RDSNNRIRMAAV  TSN RHAR+AA    +IE+L  GGSAL+EWRLETGRTH
Sbjct: 297  GRIEIPIARDSNNRIRMAAVLGTSNSRHARYAA----IIELLGRGGSALVEWRLETGRTH 352

Query: 418  QIRAHAKYLGIPLLGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLG 239
            QIRAHAKY+GIPLLGDEVYGGTK+MALSLLR RT              LQRPCLHA +LG
Sbjct: 353  QIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTSSSHHGHLSQILSKLQRPCLHASSLG 412

Query: 238  FKHPHTDEDMQFSCPPPADFAELLSELRAI 149
            FKHPHT E ++FSCPPP DFAE+L +L++I
Sbjct: 413  FKHPHTGEYLRFSCPPPDDFAEVLDQLQSI 442


>ref|XP_010063294.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379712|ref|XP_010063295.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379717|ref|XP_010063296.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis] gi|702379720|ref|XP_010063297.1| PREDICTED: RNA
            pseudouridine synthase 2, chloroplastic [Eucalyptus
            grandis]
          Length = 454

 Score =  498 bits (1281), Expect = e-138
 Identities = 257/376 (68%), Positives = 293/376 (77%), Gaps = 1/376 (0%)
 Frame = -1

Query: 1261 YAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVVK 1082
            YAGVRL+ETV      K RLD+WISSRI GVSRAR+QSSIRSGLVSVNGR + KVSH V+
Sbjct: 74   YAGVRLRETVDAAKPGKLRLDAWISSRIQGVSRARVQSSIRSGLVSVNGRVVDKVSHNVR 133

Query: 1081 AGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGIL 902
            AGD VDCTISELQPLRAEPEDIP+DIVYED H+LVVNKPAHMVVHPAPGNA+GTLVN IL
Sbjct: 134  AGDMVDCTISELQPLRAEPEDIPVDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNAIL 193

Query: 901  HHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDKG 722
            HHCSLPT AF  +++ SE E                    +S+    SVRPGIVHRLDKG
Sbjct: 194  HHCSLPTVAFSETELLSEGEDVSDDESSSSTACETSTKGFNSSESGGSVRPGIVHRLDKG 253

Query: 721  TSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRMA 542
            TSGLLVVAK+E SHA LSEQFK HTI RVY+SLT GVPS + GRI +PI RD+NNRIRM+
Sbjct: 254  TSGLLVVAKNERSHAHLSEQFKMHTIRRVYVSLTNGVPSATSGRIEVPIGRDTNNRIRMS 313

Query: 541  AVSDTSN-RHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEV 365
            A+   SN R AR+AASRY+VIE+LA G SAL+EWRLETGRTHQIRAHAKY+GIPLLGDEV
Sbjct: 314  AIPGPSNGRQARYAASRYKVIEVLAGGSSALVEWRLETGRTHQIRAHAKYVGIPLLGDEV 373

Query: 364  YGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPA 185
            YGGTKNM LSLL+A+ P             L+RPCLHA +LGF HP+T E++QFSC PP 
Sbjct: 374  YGGTKNMILSLLQAKLPIGRQSQLSELVSKLERPCLHAVSLGFIHPYTGENVQFSCQPPE 433

Query: 184  DFAELLSELRAISTKK 137
            DF+E+L +LR +  KK
Sbjct: 434  DFSEILCQLRRLGMKK 449


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  494 bits (1272), Expect = e-137
 Identities = 257/380 (67%), Positives = 299/380 (78%)
 Frame = -1

Query: 1264 NYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVV 1085
            NY+GV+L+E+V +K S KSRLDSWISSRI G+SRAR+QSSI+SGLVSVNG+ I KVSH V
Sbjct: 77   NYSGVKLEESVDSK-SGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNV 135

Query: 1084 KAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGI 905
            KAGDKV+C ISELQPLRAEPE+IPLDIVYED ++LVVNKPAHMVVHPAPGNA GTLVNGI
Sbjct: 136  KAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGI 195

Query: 904  LHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDK 725
            LHHCSLPT +  + ++ S  E                   + S+    SVRPGIVHRLDK
Sbjct: 196  LHHCSLPTVS--SQEVLSGAE----------DVSDDDDEGLCSSSYAASVRPGIVHRLDK 243

Query: 724  GTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRM 545
            GTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVP+P  GRI +PI RD +NRIRM
Sbjct: 244  GTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRM 303

Query: 544  AAVSDTSNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEV 365
            AA+ + +   ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+GIPLLGDEV
Sbjct: 304  AAIVEPNRGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEV 363

Query: 364  YGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPA 185
            YGGT+NMALSLLR+RT              L+RPCLHA  LGF HP T +++ FSCPPP 
Sbjct: 364  YGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPP 423

Query: 184  DFAELLSELRAISTKKVIYQ 125
            DF E+LS+LR + T+K+ ++
Sbjct: 424  DFTEILSQLREMGTEKLSFK 443


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  494 bits (1272), Expect = e-137
 Identities = 255/385 (66%), Positives = 291/385 (75%), Gaps = 1/385 (0%)
 Frame = -1

Query: 1276 PVLGNYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKV 1097
            P+  +Y GV+L+ETV      K RLDSWISSRI G+SRAR+QSSI+SGLV+VNGR + KV
Sbjct: 58   PIRTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKV 117

Query: 1096 SHVVKAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTL 917
            SH ++ GDKV+C ISELQPLRAEPEDIPLDIVYED H+LVVNKP HMVVHPAPGNA GTL
Sbjct: 118  SHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTL 177

Query: 916  VNGILHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVH 737
            VNGILHHCSLPT A    ++ S+TE                           SVRPGIVH
Sbjct: 178  VNGILHHCSLPTVALSEKEVLSDTEDVSDDDEGFCYGASAAA----------SVRPGIVH 227

Query: 736  RLDKGTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNN 557
            RLDKGTSGLLVVAKDEHSH+ LSEQFK HTI RVY+SLT GVPSPS GR+ I I RDSNN
Sbjct: 228  RLDKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNN 287

Query: 556  RIRMAAVSDTSNR-HARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPL 380
            R+RM AV   ++   ARHAASRY+VIE+LA GGSAL++WRLETGRTHQIRAHAKY+GIPL
Sbjct: 288  RVRMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPL 347

Query: 379  LGDEVYGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFS 200
            LGDEVYGGTK+MALSLLR RTP             L+RP LHA  LGF+HPH+ E M FS
Sbjct: 348  LGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFS 407

Query: 199  CPPPADFAELLSELRAISTKKVIYQ 125
            C PP DFAE+LS+LR I T+K  ++
Sbjct: 408  CQPPPDFAEILSDLRKIGTEKPTFK 432


>ref|XP_011034961.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Populus
            euphratica]
          Length = 416

 Score =  492 bits (1267), Expect = e-136
 Identities = 256/376 (68%), Positives = 297/376 (78%)
 Frame = -1

Query: 1264 NYAGVRLQETVVNKLSKKSRLDSWISSRIHGVSRARIQSSIRSGLVSVNGRTISKVSHVV 1085
            NY+GV+L+E+V +K S KSRLDSWISSRI G+SRAR+QSSI+SGLVSVNG+ I KVSH V
Sbjct: 48   NYSGVKLEESVDSK-SGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNV 106

Query: 1084 KAGDKVDCTISELQPLRAEPEDIPLDIVYEDAHLLVVNKPAHMVVHPAPGNANGTLVNGI 905
            KAGDKV+C ISELQPLRAEPE+IPLDIVYED ++LVVNKPAHMVVHPAPGNA GTLVNGI
Sbjct: 107  KAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGI 166

Query: 904  LHHCSLPTAAFPNSDIFSETEYXXXXXXXXXXXXXXXXXEISSNVCNDSVRPGIVHRLDK 725
            LHHCSLPT +  + ++ S  E                   + S+    SVRPGIVHRLDK
Sbjct: 167  LHHCSLPTVS--SQEVLSGAE---------DVSDDDDDEGLCSSSHAASVRPGIVHRLDK 215

Query: 724  GTSGLLVVAKDEHSHACLSEQFKNHTICRVYLSLTVGVPSPSYGRIAIPISRDSNNRIRM 545
            GTSGLLVVAKDEHSHA LSEQFK HTI RVY+SLT GVP+P  GRI +PI RD +NRIRM
Sbjct: 216  GTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRM 275

Query: 544  AAVSDTSNRHARHAASRYRVIEILADGGSALLEWRLETGRTHQIRAHAKYLGIPLLGDEV 365
            AA+++ +   ARHAASRY+VIEILA GGSAL+EWRLETGRTHQIRAHAKY+GIPLLGDEV
Sbjct: 276  AAIAEPNRGQARHAASRYKVIEILARGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEV 335

Query: 364  YGGTKNMALSLLRARTPXXXXXXXXXXXXXLQRPCLHAFTLGFKHPHTDEDMQFSCPPPA 185
            YGGT+NMALSLLR+RT              L+RPCLHA  LGF HP T +++ F+CPPP 
Sbjct: 336  YGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFACPPPP 395

Query: 184  DFAELLSELRAISTKK 137
            DF E+LS+LR + T+K
Sbjct: 396  DFTEILSQLREMGTEK 411