BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00026179
         (423 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   201   1e-49
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   201   1e-49
ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   201   1e-49
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   201   1e-49
gb|KRG96008.1| hypothetical protein GLYMA_19G183100 [Glycine max]     200   3e-49
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   200   3e-49
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   198   2e-48
ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF,...   197   2e-48
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   197   2e-48
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   197   3e-48
gb|KOM29307.1| hypothetical protein LR48_Vigan641s009500 [Vigna ...   195   1e-47
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,...   194   2e-47
ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF,...   194   2e-47
ref|XP_012443172.1| PREDICTED: RNA polymerase sigma factor sigF,...   194   3e-47
ref|XP_012443171.1| PREDICTED: RNA polymerase sigma factor sigF,...   194   3e-47
ref|XP_012443173.1| PREDICTED: RNA polymerase sigma factor sigF,...   194   3e-47
ref|XP_012443174.1| PREDICTED: RNA polymerase sigma factor sigF,...   194   3e-47
gb|KHG05515.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   194   3e-47
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,...   192   8e-47
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore...   192   8e-47

>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X4 [Nelumbo nucifera]
          Length = 525

 Score =  201 bits (512), Expect = 1e-49
 Identities = 95/140 (67%), Positives = 114/140 (81%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKPQ GCRF+TYAYWWIRQ+IRKA+   SRTIRLPENV++LL+Q+  ++K +IQEGHHP 
Sbjct: 330 FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 389

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEELAK VGIT+EK+E L  S R PLSI+Q  W D+ TTFQEITAD  VE P++   KQL
Sbjct: 390 NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 449

Query: 62  MRRHVHNLLSILSPRERQII 3
           MRRHV NL+SIL P+ER+II
Sbjct: 450 MRRHVRNLISILPPKERRII 469


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X3 [Nelumbo nucifera]
          Length = 540

 Score =  201 bits (512), Expect = 1e-49
 Identities = 95/140 (67%), Positives = 114/140 (81%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKPQ GCRF+TYAYWWIRQ+IRKA+   SRTIRLPENV++LL+Q+  ++K +IQEGHHP 
Sbjct: 345 FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 404

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEELAK VGIT+EK+E L  S R PLSI+Q  W D+ TTFQEITAD  VE P++   KQL
Sbjct: 405 NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 464

Query: 62  MRRHVHNLLSILSPRERQII 3
           MRRHV NL+SIL P+ER+II
Sbjct: 465 MRRHVRNLISILPPKERRII 484


>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Nelumbo nucifera]
          Length = 565

 Score =  201 bits (512), Expect = 1e-49
 Identities = 95/140 (67%), Positives = 114/140 (81%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKPQ GCRF+TYAYWWIRQ+IRKA+   SRTIRLPENV++LL+Q+  ++K +IQEGHHP 
Sbjct: 370 FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 429

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEELAK VGIT+EK+E L  S R PLSI+Q  W D+ TTFQEITAD  VE P++   KQL
Sbjct: 430 NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 489

Query: 62  MRRHVHNLLSILSPRERQII 3
           MRRHV NL+SIL P+ER+II
Sbjct: 490 MRRHVRNLISILPPKERRII 509


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Nelumbo nucifera]
          Length = 568

 Score =  201 bits (512), Expect = 1e-49
 Identities = 95/140 (67%), Positives = 114/140 (81%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKPQ GCRF+TYAYWWIRQ+IRKA+   SRTIRLPENV++LL+Q+  ++K +IQEGHHP 
Sbjct: 373 FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 432

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEELAK VGIT+EK+E L  S R PLSI+Q  W D+ TTFQEITAD  VE P++   KQL
Sbjct: 433 NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 492

Query: 62  MRRHVHNLLSILSPRERQII 3
           MRRHV NL+SIL P+ER+II
Sbjct: 493 MRRHVRNLISILPPKERRII 512


>gb|KRG96008.1| hypothetical protein GLYMA_19G183100 [Glycine max]
          Length = 512

 Score =  200 bits (509), Expect = 3e-49
 Identities = 92/141 (65%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGH-HP 246
           FKP+ GCRF TYAYWWIR ++RKA+ L SRTIRLPEN++ LL ++I ++KSYIQEG+ HP
Sbjct: 316 FKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHP 375

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EKM+ LL ++RNP+S++QT W D+ TTFQEITAD  +EIP+++ +KQ
Sbjct: 376 TKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQ 435

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR HVHNLL+ILSP+ER II
Sbjct: 436 LMRMHVHNLLNILSPKERGII 456


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Glycine max] gi|734316844|gb|KHN02326.1| RNA polymerase
           sigma factor rpoD [Glycine soja]
           gi|947046376|gb|KRG96005.1| hypothetical protein
           GLYMA_19G183100 [Glycine max]
           gi|947046377|gb|KRG96006.1| hypothetical protein
           GLYMA_19G183100 [Glycine max]
           gi|947046378|gb|KRG96007.1| hypothetical protein
           GLYMA_19G183100 [Glycine max]
          Length = 554

 Score =  200 bits (509), Expect = 3e-49
 Identities = 92/141 (65%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGH-HP 246
           FKP+ GCRF TYAYWWIR ++RKA+ L SRTIRLPEN++ LL ++I ++KSYIQEG+ HP
Sbjct: 358 FKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHP 417

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EKM+ LL ++RNP+S++QT W D+ TTFQEITAD  +EIP+++ +KQ
Sbjct: 418 TKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQ 477

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR HVHNLL+ILSP+ER II
Sbjct: 478 LMRMHVHNLLNILSPKERGII 498


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
           gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
           rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  198 bits (503), Expect = 2e-48
 Identities = 90/141 (63%), Positives = 120/141 (85%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHH-P 246
           FKPQVGCRF+TYAYWWIRQ+IRK+++  SRT+RLPENVH LL+++++++KSYI+EG+H P
Sbjct: 372 FKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSYIREGNHCP 431

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL + R PLS++Q+ W D+  TFQE+T D G+EIP++S  KQ
Sbjct: 432 SKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEIPDVSVAKQ 491

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR+HV NLLS+LSPRER II
Sbjct: 492 LMRQHVRNLLSVLSPRERTII 512


>ref|XP_006577030.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Glycine max]
          Length = 477

 Score =  197 bits (502), Expect = 2e-48
 Identities = 92/141 (65%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGH-HP 246
           FKP+ GCRF TYAYWWIR +IRKA+ L SRTIRLPEN++ LL ++I ++KSYIQEG+ HP
Sbjct: 281 FKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHP 340

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL ++RNP+S++QT W D+ TTFQEITAD  +EIP ++ +KQ
Sbjct: 341 TKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQ 400

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMRRHVHNLL+ILSP+E+ II
Sbjct: 401 LMRRHVHNLLNILSPKEKGII 421


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Glycine max] gi|734340710|gb|KHN09515.1| RNA
           polymerase sigma factor rpoD [Glycine soja]
           gi|947119470|gb|KRH67719.1| hypothetical protein
           GLYMA_03G182600 [Glycine max]
          Length = 554

 Score =  197 bits (502), Expect = 2e-48
 Identities = 92/141 (65%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGH-HP 246
           FKP+ GCRF TYAYWWIR +IRKA+ L SRTIRLPEN++ LL ++I ++KSYIQEG+ HP
Sbjct: 358 FKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHP 417

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL ++RNP+S++QT W D+ TTFQEITAD  +EIP ++ +KQ
Sbjct: 418 TKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQ 477

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMRRHVHNLL+ILSP+E+ II
Sbjct: 478 LMRRHVHNLLNILSPKEKGII 498


>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
           guineensis]
          Length = 570

 Score =  197 bits (501), Expect = 3e-48
 Identities = 92/140 (65%), Positives = 112/140 (80%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKP+ GCRF+TYAYWWIRQSIR+A+ L SR IRLPENV  LL +I N+R+ +IQEGH P 
Sbjct: 375 FKPKAGCRFATYAYWWIRQSIRRAIFLNSRVIRLPENVFGLLKRIKNARRLFIQEGHAPT 434

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEE+AK VGI++EK+E LL + RNP+SI++  W D+   FQEITADPGVE PE+S  KQ+
Sbjct: 435 NEEIAKRVGISVEKLEALLLTTRNPISIQECVWTDQDVKFQEITADPGVETPELSIAKQM 494

Query: 62  MRRHVHNLLSILSPRERQII 3
           MR+HV  LL IL PRERQII
Sbjct: 495 MRQHVRGLLRILKPRERQII 514


>gb|KOM29307.1| hypothetical protein LR48_Vigan641s009500 [Vigna angularis]
          Length = 549

 Score =  195 bits (496), Expect = 1e-47
 Identities = 90/141 (63%), Positives = 118/141 (83%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGH-HP 246
           FKP  GCRF TYAYWWIR SIRKA+ L SRTIR+PEN++ LL ++I ++KS+IQEG+ +P
Sbjct: 353 FKPGAGCRFGTYAYWWIRHSIRKAIFLHSRTIRIPENLYRLLGKVIEAKKSFIQEGNINP 412

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT++K+E LL ++RNP+S++QT W D+ TTFQEITAD  +EIP++  +KQ
Sbjct: 413 SKEELARRVGITIDKLETLLFASRNPISMQQTVWADQETTFQEITADSAIEIPDVCVSKQ 472

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMRRHVHNLLS+LSP+E+ II
Sbjct: 473 LMRRHVHNLLSMLSPKEKSII 493


>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Phoenix dactylifera]
          Length = 529

 Score =  194 bits (494), Expect = 2e-47
 Identities = 91/140 (65%), Positives = 112/140 (80%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKP+VGCRFSTYAYWWIRQSIRKA+ L SR IRLPENV  LL  I  +R+ +IQEGH P 
Sbjct: 334 FKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGLLKSIKKARRLFIQEGHAPT 393

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEE+AK VGI++E++++LL + RNP+SI++ AW D+  TFQEIT DP VE P++S  KQ+
Sbjct: 394 NEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQEITGDPEVETPDLSMAKQM 453

Query: 62  MRRHVHNLLSILSPRERQII 3
           MR+HV  LL IL PRERQII
Sbjct: 454 MRQHVRGLLRILKPRERQII 473


>ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Phoenix dactylifera]
          Length = 466

 Score =  194 bits (494), Expect = 2e-47
 Identities = 91/140 (65%), Positives = 112/140 (80%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKP+VGCRFSTYAYWWIRQSIRKA+ L SR IRLPENV  LL  I  +R+ +IQEGH P 
Sbjct: 271 FKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGLLKSIKKARRLFIQEGHAPT 330

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEE+AK VGI++E++++LL + RNP+SI++ AW D+  TFQEIT DP VE P++S  KQ+
Sbjct: 331 NEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQEITGDPEVETPDLSMAKQM 390

Query: 62  MRRHVHNLLSILSPRERQII 3
           MR+HV  LL IL PRERQII
Sbjct: 391 MRQHVRGLLRILKPRERQII 410


>ref|XP_012443172.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X2 [Gossypium raimondii]
          Length = 570

 Score =  194 bits (492), Expect = 3e-47
 Identities = 89/141 (63%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEG-HHP 246
           FKPQVGCRF+TYAYWWIRQ+I K+++  SRTIRLPENV+ LL++++++++S  QEG H+P
Sbjct: 374 FKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKVLDAKRSCFQEGNHYP 433

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL S+R PLS++Q  W D+ TTFQE+T D G+EIP++S  KQ
Sbjct: 434 SKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVTPDTGIEIPDVSVAKQ 493

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR+HV NLLSILSP+ER+II
Sbjct: 494 LMRQHVRNLLSILSPKERKII 514


>ref|XP_012443171.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X1 [Gossypium raimondii]
          Length = 572

 Score =  194 bits (492), Expect = 3e-47
 Identities = 89/141 (63%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEG-HHP 246
           FKPQVGCRF+TYAYWWIRQ+I K+++  SRTIRLPENV+ LL++++++++S  QEG H+P
Sbjct: 376 FKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKVLDAKRSCFQEGNHYP 435

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL S+R PLS++Q  W D+ TTFQE+T D G+EIP++S  KQ
Sbjct: 436 SKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVTPDTGIEIPDVSVAKQ 495

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR+HV NLLSILSP+ER+II
Sbjct: 496 LMRQHVRNLLSILSPKERKII 516


>ref|XP_012443173.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X3 [Gossypium raimondii] gi|763795411|gb|KJB62407.1|
           hypothetical protein B456_009G415400 [Gossypium
           raimondii]
          Length = 567

 Score =  194 bits (492), Expect = 3e-47
 Identities = 89/141 (63%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEG-HHP 246
           FKPQVGCRF+TYAYWWIRQ+I K+++  SRTIRLPENV+ LL++++++++S  QEG H+P
Sbjct: 371 FKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKVLDAKRSCFQEGNHYP 430

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL S+R PLS++Q  W D+ TTFQE+T D G+EIP++S  KQ
Sbjct: 431 SKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVTPDTGIEIPDVSVAKQ 490

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR+HV NLLSILSP+ER+II
Sbjct: 491 LMRQHVRNLLSILSPKERKII 511


>ref|XP_012443174.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform
           X4 [Gossypium raimondii] gi|763795410|gb|KJB62406.1|
           hypothetical protein B456_009G415400 [Gossypium
           raimondii]
          Length = 565

 Score =  194 bits (492), Expect = 3e-47
 Identities = 89/141 (63%), Positives = 119/141 (84%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEG-HHP 246
           FKPQVGCRF+TYAYWWIRQ+I K+++  SRTIRLPENV+ LL++++++++S  QEG H+P
Sbjct: 369 FKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKVLDAKRSCFQEGNHYP 428

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL S+R PLS++Q  W D+ TTFQE+T D G+EIP++S  KQ
Sbjct: 429 SKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVTPDTGIEIPDVSVAKQ 488

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR+HV NLLSILSP+ER+II
Sbjct: 489 LMRQHVRNLLSILSPKERKII 509


>gb|KHG05515.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 567

 Score =  194 bits (492), Expect = 3e-47
 Identities = 90/141 (63%), Positives = 118/141 (83%), Gaps = 1/141 (0%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEG-HHP 246
           FKPQVGCRF TYAYWWIRQ+I K+++  SRTIRLPENV+ LL++++++++S IQEG H+P
Sbjct: 371 FKPQVGCRFGTYAYWWIRQTITKSILQHSRTIRLPENVYGLLSKVLDAKRSCIQEGNHYP 430

Query: 245 MNEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQ 66
             EELA+ VGIT+EK++ LL S R PLS++Q  W D+ TTFQE+T D G+EIP++S  KQ
Sbjct: 431 SKEELARRVGITVEKLDKLLLSTRMPLSMQQPVWVDQDTTFQEVTPDTGIEIPDVSVAKQ 490

Query: 65  LMRRHVHNLLSILSPRERQII 3
           LMR+HV NLLSILSP+ER+II
Sbjct: 491 LMRQHVRNLLSILSPKERKII 511


>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic
           [Amborella trichopoda]
          Length = 581

 Score =  192 bits (488), Expect = 8e-47
 Identities = 90/140 (64%), Positives = 112/140 (80%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKP+ GCRFSTYAYWWIRQ+IRK++   SRTIRLPENV+ LLT+I N+R+ Y QEGH P 
Sbjct: 386 FKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHRPT 445

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEELA+ VGIT++K+E +   ++ P+SI+Q  W D+  T QEITADP VE PE +  KQL
Sbjct: 446 NEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAKQL 505

Query: 62  MRRHVHNLLSILSPRERQII 3
           MRRHV NLLS+L+PRERQ+I
Sbjct: 506 MRRHVRNLLSLLNPRERQVI 525


>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  192 bits (488), Expect = 8e-47
 Identities = 90/140 (64%), Positives = 112/140 (80%)
 Frame = -2

Query: 422 FKPQVGCRFSTYAYWWIRQSIRKAVVLKSRTIRLPENVHALLTQIINSRKSYIQEGHHPM 243
           FKP+ GCRFSTYAYWWIRQ+IRK++   SRTIRLPENV+ LLT+I N+R+ Y QEGH P 
Sbjct: 378 FKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHRPT 437

Query: 242 NEELAKHVGITLEKMEMLLASARNPLSIEQTAWRDEGTTFQEITADPGVEIPEISATKQL 63
           NEELA+ VGIT++K+E +   ++ P+SI+Q  W D+  T QEITADP VE PE +  KQL
Sbjct: 438 NEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAKQL 497

Query: 62  MRRHVHNLLSILSPRERQII 3
           MRRHV NLLS+L+PRERQ+I
Sbjct: 498 MRRHVRNLLSLLNPRERQVI 517