BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00023497
         (328 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009171970.1| RNA polymerase beta (chloroplast) [Machilus ...    94   4e-17
gb|AFB77000.1| DNA-directed RNA polymerase beta' chain, partial ...    89   1e-15
ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis ...    88   2e-15
ref|YP_784377.1| RNA polymerase beta [Drimys granadensis] gi|122...    88   2e-15
gb|AFB77004.1| DNA-directed RNA polymerase beta' chain, partial ...    88   3e-15
gb|AFB77001.1| DNA-directed RNA polymerase beta' chain, partial ...    87   4e-15
gb|AFB76999.1| DNA-directed RNA polymerase beta' chain, partial ...    87   4e-15
gb|AIS35674.1| RNA polymerase beta (chloroplast) [Mesembryanthem...    87   5e-15
ref|YP_009092294.1| RNA polymerase beta (chloroplast) [Macadamia...    87   5e-15
gb|AFB77003.1| DNA-directed RNA polymerase beta' chain, partial ...    87   5e-15
ref|YP_009160793.1| RNA polymerase beta (chloroplast) [Haloxylon...    86   8e-15
ref|YP_009166216.1| RNA polymerase beta' subunit (chloroplast) [...    86   1e-14
gb|AKZ23902.1| RNA polymerase beta subunit (plastid) [Symphorica...    86   1e-14
ref|YP_009059510.1| RNA polymerase beta subunit [Iris gatesii] g...    86   1e-14
gb|AGN73971.1| RNA polymerase beta' subunit (chloroplast) [Aconi...    86   1e-14
ref|NP_054923.1| RNA polymerase beta' subunit [Spinacia oleracea...    86   1e-14
ref|YP_009175666.1| RNA polymerase beta' subunit (chloroplast) [...    85   2e-14
gb|ALG63280.1| RNA polymerase beta' subunit (chloroplast) [Beta ...    85   2e-14
ref|YP_009114860.1| RNA polymerase beta' subunit [Thalictrum cor...    85   2e-14
gb|AHY80532.1| RNA polymerase beta [Beta vulgaris subsp. vulgaris]     85   2e-14

>ref|YP_009171970.1| RNA polymerase beta (chloroplast) [Machilus yunnanensis]
           gi|938340030|ref|YP_009172051.1| RNA polymerase beta
           (chloroplast) [Machilus balansae]
           gi|913021825|gb|AKU70965.1| RNA polymerase beta
           (chloroplast) [Cinnamomum micranthum f. kanehirae]
           gi|929982313|gb|ALF35675.1| RNA polymerase beta
           (chloroplast) [Machilus yunnanensis]
           gi|929982395|gb|ALF35756.1| RNA polymerase beta
           (chloroplast) [Machilus balansae]
          Length = 683

 Score = 94.0 bits (232), Expect = 4e-17
 Identities = 47/69 (68%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+FS AIG PIS PTQDML G   + IGNR GICAN YNPWN  NYQNETV  Y
Sbjct: 512 LMFSHMNLFSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPWNRINYQNETVNDY 571

Query: 32  NYKVYFKEK 6
            YK   KEK
Sbjct: 572 KYKYTTKEK 580


>gb|AFB77000.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
           [Didierea madagascariensis]
          Length = 668

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 45/68 (66%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GICAN YNPWNHKNYQNE +   
Sbjct: 503 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDN 562

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 563 NYK-YTKE 569


>ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia]
           gi|226933873|gb|ACO92006.1| RNA polymerase beta' subunit
           (chloroplast) [Megaleranthis saniculifolia]
          Length = 680

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 44/68 (64%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   + IGNR GICAN YNPWNH+NYQNE +   
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNYQNEKIDDN 571

Query: 32  NYKVYFKE 9
           N+K Y KE
Sbjct: 572 NHK-YTKE 578


>ref|YP_784377.1| RNA polymerase beta [Drimys granadensis]
           gi|122164450|sp|Q06H06.1|RPOC1_DRIGR RecName:
           Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
           gi|112032653|gb|ABH88288.1| RNA polymerase beta
           (chloroplast) [Drimys granadensis]
          Length = 681

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 45/70 (64%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   + IGNR GICAN YNPWN +NYQN+TV  Y
Sbjct: 512 LMFSHMNLLSPAIGDPISIPTQDMLIGLYVLTIGNRRGICANRYNPWNRRNYQNKTVYEY 571

Query: 32  NYKV-YFKEK 6
           N    Y KEK
Sbjct: 572 NNNYRYTKEK 581


>gb|AFB77004.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
           [Portulacaria afra]
          Length = 668

 Score = 87.8 bits (216), Expect = 3e-15
 Identities = 44/68 (64%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GIC+N YNPWNHKNYQNE +   
Sbjct: 503 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICSNRYNPWNHKNYQNERIDDN 562

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 563 NYK-YTKE 569


>gb|AFB77001.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
           [Maihuenia poeppigii]
          Length = 668

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 44/68 (64%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQ+ML G   +  GNR GICAN YNPWNHKNYQNE +   
Sbjct: 503 LMFSHMNLLSPAIGDPISVPTQEMLIGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDN 562

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 563 NYK-YTKE 569


>gb|AFB76999.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
           [Anredera baselloides]
          Length = 668

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 45/68 (66%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GICAN YNPWNHKNYQNE     
Sbjct: 503 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNHKNYQNERFDDN 562

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 563 NYK-YTKE 569


>gb|AIS35674.1| RNA polymerase beta (chloroplast) [Mesembryanthemum crystallinum]
          Length = 683

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 44/68 (64%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PI  PTQDML G   +  GNR GICAN YNPWNHKNYQNE +   
Sbjct: 515 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDN 574

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 575 NYK-YTKE 581


>ref|YP_009092294.1| RNA polymerase beta (chloroplast) [Macadamia integrifolia]
           gi|563321821|gb|AHB38150.1| RNA polymerase beta
           (chloroplast) [Macadamia integrifolia]
          Length = 682

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 44/69 (63%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   + IGNR GICAN YNPWN +NYQNE +   
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNRRNYQNERIDDN 571

Query: 32  NYKVYFKEK 6
           NYK Y K+K
Sbjct: 572 NYK-YKKKK 579


>gb|AFB77003.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
           [Opuntia decumbens]
          Length = 633

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 44/68 (64%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PI  PTQDML G   +  GNR GICAN YNPWNHKNYQNE +   
Sbjct: 473 LMFSHMNLLSPAIGDPIXVPTQDMLIGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDN 532

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 533 NYK-YTKE 539


>ref|YP_009160793.1| RNA polymerase beta (chloroplast) [Haloxylon ammodendron]
           gi|910354434|ref|YP_009160878.1| RNA polymerase beta
           (chloroplast) [Haloxylon persicum]
           gi|555298245|gb|AGZ13342.1| RNA polymerase beta
           (chloroplast) [Haloxylon ammodendron]
           gi|555298331|gb|AGZ13427.1| RNA polymerase beta
           (chloroplast) [Haloxylon persicum]
          Length = 677

 Score = 86.3 bits (212), Expect = 8e-15
 Identities = 43/68 (63%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GICAN YNPWNHK YQN+ +   
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANRYNPWNHKTYQNKRIDDQ 571

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 572 NYK-YMKE 578


>ref|YP_009166216.1| RNA polymerase beta' subunit (chloroplast) [Piper kadsura]
           gi|918056528|gb|AKZ89412.1| RNA polymerase beta' subunit
           (chloroplast) [Piper kadsura]
          Length = 683

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 43/69 (62%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQD+L G   + IGNR G+CAN YNPWN +NYQNETV   
Sbjct: 512 LMFSHMNLLSPAIGSPISVPTQDILIGLYVLTIGNRQGVCANRYNPWNRRNYQNETVDHT 571

Query: 32  NYKVYFKEK 6
            Y+ Y KEK
Sbjct: 572 KYR-YTKEK 579


>gb|AKZ23902.1| RNA polymerase beta subunit (plastid) [Symphoricarpos occidentalis]
          Length = 679

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S A+G+PIS PTQDML G   +  GNR G+C N YNPWN +NYQNE +   
Sbjct: 512 LMFSHMNLLSPAMGNPISVPTQDMLIGLYVLTRGNRRGVCVNRYNPWNRRNYQNERIFDN 571

Query: 32  NYKVYFKEK 6
           NYK Y KEK
Sbjct: 572 NYK-YTKEK 579


>ref|YP_009059510.1| RNA polymerase beta subunit [Iris gatesii]
           gi|685161355|gb|AIN78999.1| RNA polymerase beta subunit
           [Iris gatesii]
          Length = 684

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 44/69 (63%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   + IGNR GICAN YNP+N +NYQN+T+ + 
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRQGICANRYNPYNCRNYQNKTIDNN 571

Query: 32  NYKVYFKEK 6
           NYK Y KEK
Sbjct: 572 NYK-YTKEK 579


>gb|AGN73971.1| RNA polymerase beta' subunit (chloroplast) [Aconitum barbatum var.
           puberulum]
          Length = 679

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 43/68 (63%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   + IGNR GICAN YNPWN++NYQNE +   
Sbjct: 511 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNNRNYQNEKIDDN 570

Query: 32  NYKVYFKE 9
           N+K Y KE
Sbjct: 571 NHK-YTKE 577


>ref|NP_054923.1| RNA polymerase beta' subunit [Spinacia oleracea]
           gi|133438|sp|P11705.1|RPOC1_SPIOL RecName:
           Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
           gi|7636096|emb|CAB88716.1| RNA polymerase beta' subunit
           (chloroplast) [Spinacia oleracea]
          Length = 677

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GICAN YNPWNHK YQNE +   
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANRYNPWNHKTYQNERIDDT 571

Query: 32  NYK 24
           NYK
Sbjct: 572 NYK 574


>ref|YP_009175666.1| RNA polymerase beta' subunit (chloroplast) [Eutrema salsugineum]
           gi|936230377|gb|ALH16851.1| RNA polymerase beta' subunit
           (chloroplast) [Eutrema salsugineum]
          Length = 680

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 43/68 (63%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGHMQI--GNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  G R GICAN YNPWN KNYQNE +   
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPWNRKNYQNEIIYET 571

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 572 NYK-YMKE 578


>gb|ALG63280.1| RNA polymerase beta' subunit (chloroplast) [Beta vulgaris subsp.
           vulgaris]
          Length = 677

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 42/68 (61%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GICAN YNPWNHK Y+N+ +   
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANRYNPWNHKTYENDRIDDN 571

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 572 NYK-YMKE 578


>ref|YP_009114860.1| RNA polymerase beta' subunit [Thalictrum coreanum]
           gi|721136296|gb|AIX03507.1| RNA polymerase beta' subunit
           (plastid) [Thalictrum coreanum]
          Length = 687

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 43/68 (63%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   + IGNR GICAN YNPWN +NYQNE +   
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNRRNYQNEKIDDN 578

Query: 32  NYKVYFKE 9
           N+K Y KE
Sbjct: 579 NHK-YTKE 585


>gb|AHY80532.1| RNA polymerase beta [Beta vulgaris subsp. vulgaris]
          Length = 681

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 42/68 (61%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 VMLSHMNIFSLAIGHPISAPTQDMLTGH--MQIGNR*GICANNYNPWNHKNYQNETVISY 33
           +M SHMN+ S AIG PIS PTQDML G   +  GNR GICAN YNPWNHK Y+N+ +   
Sbjct: 516 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANRYNPWNHKTYENDRIDDN 575

Query: 32  NYKVYFKE 9
           NYK Y KE
Sbjct: 576 NYK-YMKE 582