BLASTX nr result

ID: Cinnamomum24_contig00021350 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00021350
         (217 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   8e-07
ref|XP_008366302.1| PREDICTED: uncharacterized protein LOC103429...    56   9e-06

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 59.7 bits (143), Expect = 8e-07
 Identities = 32/71 (45%), Positives = 41/71 (57%)
 Frame = +1

Query: 1   VFLKAFKRTLRSLQSLLNLYQDSSGQLFNLQKSQLFVGKVTVRKANLIADFLSIPKASLP 180
           VF KA   +L  L+SL   Y D SGQ+ N++KS +F G +T  + N I + L     SLP
Sbjct: 434 VFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLP 493

Query: 181 STYLGVPFFFG 213
            TYLG P F G
Sbjct: 494 FTYLGAPIFKG 504


>ref|XP_008366302.1| PREDICTED: uncharacterized protein LOC103429949 [Malus domestica]
          Length = 946

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +1

Query: 1   VFLKAFKRTLRSLQSLLNLYQDSSGQLFNLQKSQLFVG-KVTVRKANLIADFLSIPKASL 177
           +FLKA  +  R+L  +L  Y ++SGQ  NLQKS ++ G  V+++ +N + + L IP  + 
Sbjct: 316 LFLKADTKNCRNLVDILGXYCEASGQQVNLQKSSVYFGANVSMQVSNELVNVLGIPAVAN 375

Query: 178 PSTYLGVPFFFG 213
           P TY GVP  +G
Sbjct: 376 PGTYXGVPXIWG 387


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