BLASTX nr result
ID: Cinnamomum24_contig00021089
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00021089
(486 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009172011.1| RNA polymerase alpha subunit (chloroplast) [... 327 3e-87
ref|YP_009172091.1| RNA polymerase alpha subunit (chloroplast) [... 323 4e-86
gb|AKU71006.1| RNA polymerase alpha subunit (chloroplast) [Cinna... 322 5e-86
ref|NP_862785.1| RNA polymerase alpha subunit [Calycanthus flori... 293 3e-77
ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chl... 293 5e-77
ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [... 290 3e-76
ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [... 290 3e-76
ref|YP_740234.1| RNA polymerase alpha subunit [Liriodendron tuli... 288 1e-75
ref|YP_004769746.1| RNA polymerase alpha subunit [Magnolia kwang... 284 2e-74
gb|AEX98283.1| RNA polymerase alpha subunit (chloroplast) [Magno... 283 3e-74
ref|YP_006576146.1| RpoA (chloroplast) [Magnolia denudata] gi|34... 283 3e-74
ref|YP_009123284.1| RNA polymerase alpha subunit (chloroplast) [... 276 6e-72
ref|YP_009170209.1| RNA polymerase alpha subunit (plastid) [Colp... 272 6e-71
gb|AKF00531.1| RNA polymerase alpha subunit (chloroplast) [Royst... 272 6e-71
gb|AKF00201.1| RNA polymerase alpha subunit (chloroplast) [Pelag... 271 2e-70
ref|YP_003540963.1| DNA-directed RNA polymerase alpha chain [Pho... 271 2e-70
gb|AGE93315.1| RNA polymerase alpha subunit [Chamaedorea seifrizii] 271 2e-70
gb|AEZ49463.1| RNA polymerase alpha subunit, partial (plastid) [... 271 2e-70
gb|AEZ49439.1| RNA polymerase alpha subunit, partial (plastid) [... 271 2e-70
ref|YP_001294130.1| RNA polymerase alpha subunit [Chloranthus sp... 270 2e-70
>ref|YP_009172011.1| RNA polymerase alpha subunit (chloroplast) [Machilus yunnanensis]
gi|929982354|gb|ALF35716.1| RNA polymerase alpha subunit
(chloroplast) [Machilus yunnanensis]
Length = 339
Score = 327 bits (837), Expect = 3e-87
Identities = 159/161 (98%), Positives = 159/161 (98%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVELVDTTQHIANLTEPIHLCIE KIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVELVDTTQHIANLTEPIHLCIELKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED
Sbjct: 184 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 243
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQ ELPSR
Sbjct: 244 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSR 284
>ref|YP_009172091.1| RNA polymerase alpha subunit (chloroplast) [Machilus balansae]
gi|929982435|gb|ALF35796.1| RNA polymerase alpha subunit
(chloroplast) [Machilus balansae]
Length = 339
Score = 323 bits (827), Expect = 4e-86
Identities = 158/161 (98%), Positives = 158/161 (98%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVELVDTTQHIANLTEPIHLCIE KIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVELVDTTQHIANLTEPIHLCIELKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHF LED
Sbjct: 184 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFDLED 243
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQ ELPSR
Sbjct: 244 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSR 284
>gb|AKU71006.1| RNA polymerase alpha subunit (chloroplast) [Cinnamomum micranthum
f. kanehirae]
Length = 339
Score = 322 bits (826), Expect = 5e-86
Identities = 157/161 (97%), Positives = 158/161 (98%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVELVDTTQHIANLTEPIHLCIE KIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVELVDTTQHIANLTEPIHLCIELKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFL AEEEDIHFYLED
Sbjct: 184 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLDAEEEDIHFYLED 243
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
NQNRFTVSFFTFHDRLAN+RKNKKGIALKCIFIDQ ELPSR
Sbjct: 244 NQNRFTVSFFTFHDRLANLRKNKKGIALKCIFIDQSELPSR 284
>ref|NP_862785.1| RNA polymerase alpha subunit [Calycanthus floridus var. glaucus]
gi|41688654|sp|Q7YJU6.1|RPOA_CALFG RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Calycanthus floridus var. glaucus]
gi|32399410|emb|CAD28752.1| RNA polymerase alpha subunit
[Calycanthus floridus var. glaucus]
Length = 340
Score = 293 bits (750), Expect = 3e-77
Identities = 143/161 (88%), Positives = 150/161 (93%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI+LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYGS NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DIH LED
Sbjct: 184 HSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLED 243
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
NQNRFTVS FT HDRL NIRKNKK IALKCIFIDQ ELP+R
Sbjct: 244 NQNRFTVSPFTLHDRLGNIRKNKKEIALKCIFIDQSELPTR 284
>ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Magnolia
yunnanensis] gi|573015534|gb|AHF72112.1| DNA-directed
RNA polymerase alpha chain (chloroplast) [Magnolia
yunnanensis]
Length = 337
Score = 293 bits (749), Expect = 5e-77
Identities = 144/161 (89%), Positives = 150/161 (93%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DIH LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIH--LED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FFTFHDRLANIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPR 282
>ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [Magnolia grandiflora]
gi|372862875|gb|AEX98951.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
gi|372863045|gb|AEX99119.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
Length = 337
Score = 290 bits (742), Expect = 3e-76
Identities = 143/161 (88%), Positives = 150/161 (93%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI+ LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIN--LED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FFTFHDRLANIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPR 282
>ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [Magnolia officinalis]
gi|452848803|ref|YP_007474484.1| RNA polymerase alpha
subunit (chloroplast) [Magnolia officinalis subsp.
biloba] gi|619275767|ref|YP_009026913.1| RNA polymerase
alpha subunit (plastid) [Magnolia tripetala]
gi|372862453|gb|AEX98534.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis]
gi|372862536|gb|AEX98616.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862621|gb|AEX98700.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862706|gb|AEX98784.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|608608435|gb|AHW51989.1| RNA polymerase alpha subunit
(plastid) [Magnolia tripetala]
Length = 337
Score = 290 bits (742), Expect = 3e-76
Identities = 143/161 (88%), Positives = 150/161 (93%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI+ LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIN--LED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FFTFHDRLANIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPR 282
>ref|YP_740234.1| RNA polymerase alpha subunit [Liriodendron tulipifera]
gi|122239940|sp|Q0G9I7.1|RPOA_LIRTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|113201026|gb|ABI32541.1| RNA polymerase alpha subunit
[Liriodendron tulipifera]
Length = 337
Score = 288 bits (736), Expect = 1e-75
Identities = 142/161 (88%), Positives = 148/161 (91%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI LED
Sbjct: 184 HSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDI--VLED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FTFHDRLANIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPLFTFHDRLANIRKNKKGIALKCIFIDQSELPPR 282
>ref|YP_004769746.1| RNA polymerase alpha subunit [Magnolia kwangsiensis]
gi|302424212|gb|ADL39088.1| RNA polymerase alpha subunit
[Magnolia kwangsiensis]
Length = 337
Score = 284 bits (727), Expect = 2e-74
Identities = 140/161 (86%), Positives = 148/161 (91%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +I+RDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIDRDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI+ LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIN--LED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FFTFHD LANIRKNKKGI LKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPFFTFHDILANIRKNKKGITLKCIFIDQSELPPR 282
>gb|AEX98283.1| RNA polymerase alpha subunit (chloroplast) [Magnolia liliiflora]
Length = 337
Score = 283 bits (725), Expect = 3e-74
Identities = 141/161 (87%), Positives = 148/161 (91%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+D + LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDRN--LED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FTFHDRLANIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPPFTFHDRLANIRKNKKGIALKCIFIDQSELPPR 282
>ref|YP_006576146.1| RpoA (chloroplast) [Magnolia denudata] gi|343887570|gb|AEM65249.1|
RpoA [Magnolia denudata] gi|372862283|gb|AEX98366.1| RNA
polymerase alpha subunit (chloroplast) [Magnolia
denudata]
Length = 337
Score = 283 bits (725), Expect = 3e-74
Identities = 141/161 (87%), Positives = 148/161 (91%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+D + LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDRN--LED 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N NRFTV FTFHDRLANIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFTVPPFTFHDRLANIRKNKKGIALKCIFIDQSELPPR 282
>ref|YP_009123284.1| RNA polymerase alpha subunit (chloroplast) [Chloranthus japonicus]
gi|756761888|gb|AJM70003.1| RNA polymerase alpha subunit
(chloroplast) [Chloranthus japonicus]
Length = 334
Score = 276 bits (705), Expect = 6e-72
Identities = 138/163 (84%), Positives = 146/163 (89%), Gaps = 2/163 (1%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +I+RDRGYRMK+PN YQDGSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLH+EEE IH LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHSEEEGIH--LED 241
Query: 362 NQNRFTVSFFTFHDRLA--NIRKNKKGIALKCIFIDQLELPSR 484
N NRF + FFTFHD LA NIRKNKKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFHIPFFTFHDGLANTNIRKNKKGIALKCIFIDQSELPPR 284
>ref|YP_009170209.1| RNA polymerase alpha subunit (plastid) [Colpothrinax cookii]
gi|927679622|gb|ALE28999.1| RNA polymerase alpha subunit
(plastid) [Colpothrinax cookii]
Length = 337
Score = 272 bits (696), Expect = 6e-71
Identities = 135/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE KI+RDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELKIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>gb|AKF00531.1| RNA polymerase alpha subunit (chloroplast) [Roystonea regia]
Length = 341
Score = 272 bits (696), Expect = 6e-71
Identities = 135/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE +IERDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELQIERDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>gb|AKF00201.1| RNA polymerase alpha subunit (chloroplast) [Pelagodoxa henryana]
gi|816379312|gb|AKF01946.1| RNA polymerase alpha subunit
(chloroplast) [Leopoldinia pulchra]
gi|816379388|gb|AKF02021.1| RNA polymerase alpha subunit
(chloroplast) [Manicaria saccifera]
Length = 341
Score = 271 bits (692), Expect = 2e-70
Identities = 134/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE +I+RDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>ref|YP_003540963.1| DNA-directed RNA polymerase alpha chain [Phoenix dactylifera]
gi|290790947|gb|ADD63202.1| DNA-directed RNA polymerase
alpha chain (chloroplast) [Phoenix dactylifera]
gi|294620609|gb|ADF28178.1| DNA-directed RNA polymerase
alpha chain (chloroplast) [Phoenix dactylifera]
Length = 337
Score = 271 bits (692), Expect = 2e-70
Identities = 134/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE +I+RDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>gb|AGE93315.1| RNA polymerase alpha subunit [Chamaedorea seifrizii]
Length = 341
Score = 271 bits (692), Expect = 2e-70
Identities = 134/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE +I+RDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>gb|AEZ49463.1| RNA polymerase alpha subunit, partial (plastid) [Ravenea
hildebrandtii]
Length = 336
Score = 271 bits (692), Expect = 2e-70
Identities = 134/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE +I+RDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>gb|AEZ49439.1| RNA polymerase alpha subunit, partial (plastid) [Chamaedorea
seifrizii]
Length = 336
Score = 271 bits (692), Expect = 2e-70
Identities = 134/161 (83%), Positives = 144/161 (89%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PP VE+VDTTQHIANLTEPI LCIE +I+RDRGYRMKS NN QDGSYPIDAVSMPVRNAN
Sbjct: 124 PPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F E+
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF--EE 241
Query: 362 NQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQLELPSR 484
N+NRF + FTF DRL N++KNKKGI LKCIFIDQ ELPSR
Sbjct: 242 NKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSR 282
>ref|YP_001294130.1| RNA polymerase alpha subunit [Chloranthus spicatus]
gi|172048690|sp|A6MMF4.1|RPOA_CHLSC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Chloranthus spicatus]
gi|146744219|gb|ABQ43291.1| RNA polymerase alpha subunit
(chloroplast) [Chloranthus spicatus]
Length = 334
Score = 270 bits (691), Expect = 2e-70
Identities = 136/163 (83%), Positives = 144/163 (88%), Gaps = 2/163 (1%)
Frame = +2
Query: 2 PPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVRNAN 181
PPSVE+VDTTQHIA+LTEPI LCIE +I+RDRGYRMK+PN YQ+GSYPIDAVSMPVRNAN
Sbjct: 124 PPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQNGSYPIDAVSMPVRNAN 183
Query: 182 HSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFYLED 361
HSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEE I LED
Sbjct: 184 HSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEGIR--LED 241
Query: 362 NQNRFTVSFFTFHDRLA--NIRKNKKGIALKCIFIDQLELPSR 484
N NRF + FFTFHD LA NIRK KKGIALKCIFIDQ ELP R
Sbjct: 242 NPNRFNIPFFTFHDGLANTNIRKKKKGIALKCIFIDQSELPPR 284