BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00017800
         (1421 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...   525   e-146
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   512   e-142
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              502   e-139
ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I sub...   477   e-132
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   477   e-131
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   477   e-131
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   477   e-131
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   477   e-131
ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I sub...   472   e-130
gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gos...   472   e-130
ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I sub...   471   e-130
emb|CDP10074.1| unnamed protein product [Coffea canephora]            466   e-128
gb|AIO05696.1| putative RNA polymerase AI large subunit, partial...   461   e-127
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   458   e-126
ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I sub...   455   e-125
ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I sub...   454   e-124
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   454   e-124
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...   450   e-123
ref|XP_011652120.1| PREDICTED: DNA-directed RNA polymerase I sub...   448   e-123
ref|XP_008443105.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   447   e-122

>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score =  525 bits (1351), Expect = e-146
 Identities = 266/495 (53%), Positives = 335/495 (67%), Gaps = 22/495 (4%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            + D+V RP+ GGLYD ALG   D   C+SCGQ S+ CPGHCGHIDLVLP+YNPLLF +L 
Sbjct: 38   IFDNVERPLPGGLYDPALGPLDDRTPCQSCGQRSFHCPGHCGHIDLVLPVYNPLLFKILF 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSED------------ 1096
            +LL++ CF+CH F   E +VQ YASQL+LI+KGD+ GA+NL +  + +            
Sbjct: 98   ALLQRVCFFCHKFKAKEEQVQKYASQLELIIKGDVAGAKNLESVLASESSFPDKHELTHK 157

Query: 1095 -------EEND---EGDTQFHTDVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQC 946
                   EEND   + DT  H+         L +H WTSLQY  A SVL  FMK+ + +C
Sbjct: 158  TSESSSLEENDLTHKTDTAIHSVDQNCNPMHLQEHHWTSLQYKEAMSVLGDFMKDKHSRC 217

Query: 945  GRCGAKAAKIKSPTFGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDG 766
              CGAK+  I  PTFGW     + N+ +RANV+RG KL  + +  A ++  S   E ++ 
Sbjct: 218  QNCGAKSPSITCPTFGWFHMN-MSNADIRANVLRGCKLSDTFVHGAAQR--SHTAEAENV 274

Query: 765  SEYTSGSVEQPDAELSGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKL 586
             +  +   +    E SGA +        E  K I EH+PP+FF Q+++  GP LP EVK 
Sbjct: 275  DDVLARGDDADILESSGAVSDGTLEFVTETDKKIGEHIPPDFFSQRKFLSGPLLPPEVKE 334

Query: 585  LLKRLWENEAHLCNRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLS 406
             ++ LW+NEA LC+ I D+Q + L +SG N  +SMFF EALLVPP +FRPP K+G  V+ 
Sbjct: 335  TMRLLWKNEARLCSLICDIQHERLHVSGMNARHSMFFTEALLVPPIKFRPPAKSGDSVME 394

Query: 405  HPQSVLLSKVVQSNISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETDG 226
            HPQ+VLL KV+QSNI+L NA+ N+S+RSK++PRWMDLQ  VN+L+DS K   + D    G
Sbjct: 395  HPQTVLLGKVLQSNIALGNAHANSSDRSKIIPRWMDLQQTVNILYDS-KTSGQRDNTATG 453

Query: 225  ICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWN 46
            ICQLLEKKEGIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN
Sbjct: 454  ICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 513

Query: 45   VNKLRHAIINGTEVH 1
            VNKLR AIING E H
Sbjct: 514  VNKLRDAIINGAEHH 528


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  512 bits (1318), Expect = e-142
 Identities = 263/485 (54%), Positives = 333/485 (68%), Gaps = 12/485 (2%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            +LDSV RPV GGLYD ALGS  +   C+SCGQ S+ CPGHCGHIDLV  +YNPLLF +L 
Sbjct: 38   MLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGT---SFSEDEENDEGDTQ 1069
            +LL+KTCF+CHHF  S + VQ Y SQL+LI KGD+VGA+NL +   S S   E+ +G   
Sbjct: 98   NLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHV 157

Query: 1068 FHTDVCRSTTED-----LVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPT 904
              +    S+  D     L + EWTSLQ   A SV++ F+K  +R C  C AK+ ++  PT
Sbjct: 158  SCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPT 217

Query: 903  FGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAE 724
            FGW     + ++  RANVIRG KL++ L   AE++  S +E   D   +  G     D +
Sbjct: 218  FGWFHMAGLSDAQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGV----DTD 273

Query: 723  LSGATAKEMPGISMEAHKNIKE---HLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAH 553
             + ++     GI     K ++      P EF KQK +F GP LP+EV+ +++RLWENEA 
Sbjct: 274  ETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAE 333

Query: 552  LCNRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVV 373
            LC+ I D+ ++ L  SG    YSMFF+E +LVPP +FRPP K    V+ HPQ+VLL KV+
Sbjct: 334  LCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVL 393

Query: 372  QSNISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKET-DGICQLLEKKEG 196
            Q+NI+L NA+ NNSERSK++ RWMDLQ ++NVLFD + A  +  ++T  GICQLLEKKEG
Sbjct: 394  QANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEG 453

Query: 195  IFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIIN 16
            +FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNV KLR AIIN
Sbjct: 454  VFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIIN 513

Query: 15   GTEVH 1
            G E+H
Sbjct: 514  GPEIH 518


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  502 bits (1293), Expect = e-139
 Identities = 259/482 (53%), Positives = 329/482 (68%), Gaps = 9/482 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            +LDSV RPV GGLYD ALGS  +   C+SCGQ S+ CPGHCGHIDLV  +YNPLLF +L 
Sbjct: 38   MLDSVQRPVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGT---SFSEDEENDEGDTQ 1069
            +LL+KTCF+CHHF  S + VQ Y SQL+LI KGD+VGA+NL +   S S   E+ +G   
Sbjct: 98   NLLQKTCFFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHV 157

Query: 1068 FHTDVCRSTTED-----LVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPT 904
              +    S+  D     L + EWTSLQ   A SV++ F+K  +R C  C AK+ ++  PT
Sbjct: 158  SCSSTVNSSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPT 217

Query: 903  FGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAE 724
            FGW     + ++  RANVIRG KL++         P++G++     ++ T  S+   D  
Sbjct: 218  FGWFHMAGLSDAQTRANVIRGSKLER---------PLNGVD-----TDETHSSIAPTDG- 262

Query: 723  LSGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCN 544
            +     K +     +A        P EF KQK +F GP LP+EV+ +++RLWENEA LC+
Sbjct: 263  IQDTVTKRLERKGAQA--------PIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCS 314

Query: 543  RIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSN 364
             I D+ ++ L  SG    YSMFF+E +LVPP +FRPP K    V+ HPQ+VLL KV+Q+N
Sbjct: 315  FISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQAN 374

Query: 363  ISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKET-DGICQLLEKKEGIFR 187
            I+L NA+ NNSERSK++ RWMDLQ ++NVLFD + A  +  ++T  GICQLLEKKEG+FR
Sbjct: 375  IALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFR 434

Query: 186  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTE 7
            QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNV KLR AIING E
Sbjct: 435  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPE 494

Query: 6    VH 1
            +H
Sbjct: 495  IH 496


>ref|XP_011075204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Sesamum
            indicum]
          Length = 1701

 Score =  477 bits (1228), Expect = e-132
 Identities = 248/492 (50%), Positives = 321/492 (65%), Gaps = 19/492 (3%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + +P+ GGLYD A+G   +   CKSCGQ ++ CPGHCGHI+LV P YNPLLF  L 
Sbjct: 33   LLDILEKPIPGGLYDPAMGPLDENSPCKSCGQRAYHCPGHCGHIELVSPAYNPLLFNTLN 92

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAE------------NLGTSFSED 1096
            +LL KTCFYC  F  S  +V++  SQL+LI+KGDIVGA+            N+    S+D
Sbjct: 93   NLLNKTCFYCFQFRTSRREVENCVSQLELIVKGDIVGAKRLSMRQNLQDKKNMDWVLSDD 152

Query: 1095 EENDEGDTQFHTDVCRSTTEDLVKHE------WTSLQYSLARSVLNTFMKENYRQCGRCG 934
              + E     HT      + D   +E      W S Q + A SVLN F+K+  R+C  C 
Sbjct: 153  IVDPEDSQGSHTSHSSGISGDQNHYEQNSQACWDSSQLTEAMSVLNEFLKKKGRKCKNCE 212

Query: 933  AKAAKIKSPTFGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYT 754
                K+  PTFGW     + ++ +R+N IR  +LD +     E++P S   E  + S+Y+
Sbjct: 213  CNNPKLNKPTFGWFHVSGLSDTQLRSNAIRRSRLDVAHSGGGEERPSS---EVVNASDYS 269

Query: 753  SGSVEQPDAELSGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKR 574
                 +     S   A + P  S +  K + +       +   YF GP LP+EV+ +L+R
Sbjct: 270  WKDDSETAEANSFIAASDTPKKSSK--KGVNQARNQGLEETNNYFSGPLLPSEVRDILRR 327

Query: 573  LWENEAHLCNRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQS 394
            LWENEA LC+ + D+Q++   +SG    YSMFF+E++LVPP +FRPP K G  V+ HPQ+
Sbjct: 328  LWENEAPLCSYMCDIQQQQCKLSGNVAGYSMFFLESILVPPIKFRPPAKGGDSVMEHPQT 387

Query: 393  VLLSKVVQSNISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKE-TDGICQ 217
            VLL KV+QSNI+L NA+VNN+ERSK++ RWMDLQL++NVLFDS+ A  +A K+ T GICQ
Sbjct: 388  VLLGKVLQSNIALGNAHVNNAERSKIINRWMDLQLSINVLFDSKTANSQAQKDGTSGICQ 447

Query: 216  LLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNK 37
             LEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN  K
Sbjct: 448  FLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNAGK 507

Query: 36   LRHAIINGTEVH 1
            LR A+ING E+H
Sbjct: 508  LRGAVINGPEIH 519


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score =  477 bits (1227), Expect = e-131
 Identities = 248/483 (51%), Positives = 324/483 (67%), Gaps = 10/483 (2%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD+V RPV GGLYD A+G+  D   CKSCGQ S+ CPGHCGHIDLV P+YNPLLF  L 
Sbjct: 37   LLDNVERPVAGGLYDPAMGTLNDTTACKSCGQRSFNCPGHCGHIDLVSPVYNPLLFNTLY 96

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENL----GTSFSEDEENDEGDT 1072
            +LLK+TCF+C HF  S ++V    S+L+LI KGD+ GA+ L     T+ S  E ++ GD 
Sbjct: 97   NLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSSLREASNGGDV 156

Query: 1071 QFHT---DVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTF 901
               T   D+   +     + EWTSLQ++ A SVLN F+K  Y++C  C AK  KI  PTF
Sbjct: 157  SCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKPTYKECKNCKAKNPKISKPTF 216

Query: 900  GWLRKEPIENSAVRANVIRGVKLDQSLID-EAEKQPVSGLEEQKDGSEYTSGSVEQPDAE 724
            GW     +  +  R N+IRG K+D   +D + E + + G   Q DG         + + +
Sbjct: 217  GWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEGAFLQDDGGN-------EAETQ 269

Query: 723  LSGATAKEMPGISMEAHKNIKEH-LPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLC 547
             S   + +  GI+ +  K  K H L  E+ KQK +F GP LP+EVK ++K LWENEA LC
Sbjct: 270  SSTFASPDGIGIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKEIMKLLWENEAPLC 329

Query: 546  NRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQS 367
            + I D+Q++    SG + ++SMFF+  +LVPP +FRPP K G  V+ HP +VLL+KV+Q+
Sbjct: 330  SFISDIQQQG---SGNSATHSMFFLGTVLVPPIKFRPPSKGGDSVMEHPHTVLLAKVLQA 386

Query: 366  NISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKET-DGICQLLEKKEGIF 190
            NISL NA+ +N  R+ ++ RWMDLQ ++N+LFDS+ A  +  ++   GICQLLEKKEG+F
Sbjct: 387  NISLGNAHQSN--RATIISRWMDLQQSINLLFDSKTATGQGRRDVASGICQLLEKKEGMF 444

Query: 189  RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGT 10
            RQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN   LR AIING 
Sbjct: 445  RQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNTVSLRKAIINGA 504

Query: 9    EVH 1
            + H
Sbjct: 505  DTH 507


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score =  477 bits (1227), Expect = e-131
 Identities = 248/483 (51%), Positives = 324/483 (67%), Gaps = 10/483 (2%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD+V RPV GGLYD A+G+  D   CKSCGQ S+ CPGHCGHIDLV P+YNPLLF  L 
Sbjct: 37   LLDNVERPVAGGLYDPAMGTLNDTTACKSCGQRSFNCPGHCGHIDLVSPVYNPLLFNTLY 96

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENL----GTSFSEDEENDEGDT 1072
            +LLK+TCF+C HF  S ++V    S+L+LI KGD+ GA+ L     T+ S  E ++ GD 
Sbjct: 97   NLLKRTCFFCFHFRESRSQVDACVSKLELIAKGDVAGAKELDSKWATNSSLREASNGGDV 156

Query: 1071 QFHT---DVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTF 901
               T   D+   +     + EWTSLQ++ A SVLN F+K  Y++C  C AK  KI  PTF
Sbjct: 157  SCSTVRSDLQHDSPVHQKQGEWTSLQFNEAMSVLNKFLKPTYKECKNCKAKNPKISKPTF 216

Query: 900  GWLRKEPIENSAVRANVIRGVKLDQSLID-EAEKQPVSGLEEQKDGSEYTSGSVEQPDAE 724
            GW     +  +  R N+IRG K+D   +D + E + + G   Q DG         + + +
Sbjct: 217  GWFHMSGMTGAQTRGNIIRGNKMDGPFLDGDGEMESLEGAFLQDDGGN-------EAETQ 269

Query: 723  LSGATAKEMPGISMEAHKNIKEH-LPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLC 547
             S   + +  GI+ +  K  K H L  E+ KQK +F GP LP+EVK ++K LWENEA LC
Sbjct: 270  SSTFASPDGIGIAKKGQKKRKGHSLSDEYIKQKNFFSGPLLPSEVKEIMKLLWENEAPLC 329

Query: 546  NRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQS 367
            + I D+Q++    SG + ++SMFF+  +LVPP +FRPP K G  V+ HP +VLL+KV+Q+
Sbjct: 330  SFISDIQQQG---SGNSATHSMFFLGTVLVPPIKFRPPSKGGDSVMEHPHTVLLAKVLQA 386

Query: 366  NISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKET-DGICQLLEKKEGIF 190
            NISL NA+ +N  R+ ++ RWMDLQ ++N+LFDS+ A  +  ++   GICQLLEKKEG+F
Sbjct: 387  NISLGNAHQSN--RATIISRWMDLQQSINLLFDSKTATGQGRRDVASGICQLLEKKEGMF 444

Query: 189  RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGT 10
            RQ MMGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWN   LR AIING 
Sbjct: 445  RQNMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNTVSLRKAIINGA 504

Query: 9    EVH 1
            + H
Sbjct: 505  DTH 507


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  477 bits (1227), Expect = e-131
 Identities = 259/478 (54%), Positives = 316/478 (66%), Gaps = 5/478 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + RP+ GGLYD  LG  +D   CKSCG     CPGHCGHIDLV PIYNPLLF  L 
Sbjct: 38   LLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDE---ENDEGDTQ 1069
            +LL++ CF+C+HF   + +V+   SQL LI  GDIVGA+ L +  ++     + +EG  +
Sbjct: 98   TLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQE 157

Query: 1068 FHTDVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLR 889
              + V  S  E +   EWTSLQ   A SVLN F+K  Y +C  C AK   I  P FGWL 
Sbjct: 158  SGSIVHNS--EAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLH 215

Query: 888  KEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSG-SVEQPDAELSGA 712
               +  + +R NVIRG K+  +  DEA     SGLE+  D S   +G  + + D    G 
Sbjct: 216  MNGMLGAQMRENVIRGCKMVDTFSDEAG----SGLEDADDVSSSGNGVDIAEMDTSEIGF 271

Query: 711  TAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNRIFD 532
            T  E  G   +A K  K  +P EF KQK  F GP LP+EVK + K LWENE  LC+ I D
Sbjct: 272  TGSE--GNGAKARKK-KAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISD 328

Query: 531  VQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNISLR 352
            +Q++     G+   YSMFF+E +LVPP +FR P K G  V+ HPQ+VLLSKV+Q+NISL 
Sbjct: 329  IQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLG 385

Query: 351  NAYVNNSERSKLVPR-WMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFRQKMM 175
            NAY NN + SK V R WMDLQ +VN+LFDS+ A+ +    + GICQLLEKKEG+FRQKMM
Sbjct: 386  NAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMM 445

Query: 174  GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEVH 1
            GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR AIING+E H
Sbjct: 446  GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFH 503


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  477 bits (1227), Expect = e-131
 Identities = 259/478 (54%), Positives = 316/478 (66%), Gaps = 5/478 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + RP+ GGLYD  LG  +D   CKSCG     CPGHCGHIDLV PIYNPLLF  L 
Sbjct: 38   LLDLMDRPMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDE---ENDEGDTQ 1069
            +LL++ CF+C+HF   + +V+   SQL LI  GDIVGA+ L +  ++     + +EG  +
Sbjct: 98   TLLQRICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQE 157

Query: 1068 FHTDVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLR 889
              + V  S  E +   EWTSLQ   A SVLN F+K  Y +C  C AK   I  P FGWL 
Sbjct: 158  SGSIVHNS--EAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLH 215

Query: 888  KEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSG-SVEQPDAELSGA 712
               +  + +R NVIRG K+  +  DEA     SGLE+  D S   +G  + + D    G 
Sbjct: 216  MNGMLGAQMRENVIRGCKMVDTFSDEAG----SGLEDADDVSSSGNGVDIAEMDTSEIGF 271

Query: 711  TAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNRIFD 532
            T  E  G   +A K  K  +P EF KQK  F GP LP+EVK + K LWENE  LC+ I D
Sbjct: 272  TGSE--GNGAKARKK-KAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISD 328

Query: 531  VQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNISLR 352
            +Q++     G+   YSMFF+E +LVPP +FR P K G  V+ HPQ+VLLSKV+Q+NISL 
Sbjct: 329  IQQQGF---GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLG 385

Query: 351  NAYVNNSERSKLVPR-WMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFRQKMM 175
            NAY NN + SK V R WMDLQ +VN+LFDS+ A+ +    + GICQLLEKKEG+FRQKMM
Sbjct: 386  NAYTNNLQSSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMM 445

Query: 174  GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEVH 1
            GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR AIING+E H
Sbjct: 446  GKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFH 503


>ref|XP_012470632.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Gossypium
            raimondii] gi|763751831|gb|KJB19219.1| hypothetical
            protein B456_003G089300 [Gossypium raimondii]
          Length = 1674

 Score =  472 bits (1215), Expect = e-130
 Identities = 254/481 (52%), Positives = 316/481 (65%), Gaps = 8/481 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + RP+ GGLYD  LG  +D   CKSCG     CPGHCGHIDLV PIYNPLLF  L 
Sbjct: 38   LLDFMNRPMPGGLYDPVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDE---ENDEGDTQ 1069
            +L+++TCF+C+HF     +V+   SQL LI KGDIVGA+ L +   +     EN EG  +
Sbjct: 98   TLIQRTCFFCYHFRAERTEVEKCISQLKLIGKGDIVGAKRLDSDSKDSSSHPENSEGCQK 157

Query: 1068 FHTDVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLR 889
              + +  S  E +   EWTSLQ + A SVLN F+K  Y++C  C AK   I  PTFGW  
Sbjct: 158  LGSRLHES--EAVNPKEWTSLQLTEAMSVLNKFLKVKYKRCKNCDAKNPAITKPTFGWFH 215

Query: 888  KEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSG----SVEQPDAEL 721
               +  S +R NVIRG K+  +   E      S +E+  D S    G      + P+   
Sbjct: 216  TSGMSGSQMRENVIRGCKMADTFSGEVG----SDIEDANDASSSEEGVDITKTKTPEIGF 271

Query: 720  SGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNR 541
             GA      G S +A K  K  +P EF KQK  F GP LP+EVK ++K LWENE  LC+ 
Sbjct: 272  KGAD-----GTSAKARKKAK--VPLEFLKQKNLFSGPLLPSEVKKVMKLLWENEIELCSL 324

Query: 540  IFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNI 361
            I  +Q++     GE   YSMFF+E +LVPP +FR P K G  V+ HPQ+VLLSKV+Q+NI
Sbjct: 325  INCIQQQGF---GEKVGYSMFFLETVLVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANI 381

Query: 360  SLRNAYVNNSERSKLVPR-WMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFRQ 184
            SL NAY N+ + SK++ R WMDLQ ++N+LFDS+ A+ +    + GICQLLE+KEG+FRQ
Sbjct: 382  SLGNAYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQRRDVSPGICQLLERKEGMFRQ 441

Query: 183  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEV 4
            KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR AIING+E+
Sbjct: 442  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEL 501

Query: 3    H 1
            H
Sbjct: 502  H 502


>gb|KHG00372.1| DNA-directed RNA polymerase I subunit rpa[2] [Gossypium arboreum]
          Length = 789

 Score =  472 bits (1214), Expect = e-130
 Identities = 253/481 (52%), Positives = 316/481 (65%), Gaps = 8/481 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + RP+ GGLYD  LG  +D   CKSCG     CPGHCGHIDLV PIYNPLLF  L 
Sbjct: 38   LLDFMNRPMPGGLYDPVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDE---ENDEGDTQ 1069
            +L+++TCF+C+HF     +V+   SQL LI KGDIVGA+ L T   +     EN EG  +
Sbjct: 98   TLVQRTCFFCYHFRAERTEVERCISQLKLIGKGDIVGAKRLDTDSKDSSSHPENSEGCQK 157

Query: 1068 FHTDVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLR 889
              + +  S  E +   EWTSLQ + A SVLN F+K  Y++C  C AK   I  PTFGW  
Sbjct: 158  LGSRLHES--EAVNPKEWTSLQLTEAMSVLNKFLKVKYKRCKNCDAKNPAITKPTFGWFH 215

Query: 888  KEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSG----SVEQPDAEL 721
               +  S +R NVIRG K+  +   E      S +E+  D S    G      + P+   
Sbjct: 216  TSGMSGSQMRENVIRGCKMADTFSGEVG----SDIEDANDASSSEEGVDIKKTKTPEIGF 271

Query: 720  SGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNR 541
             GA      G S +A K  K  +P EF KQK  F GP LP+EVK ++K LWENE  LC+ 
Sbjct: 272  KGAD-----GTSTKARKKAK--VPLEFLKQKNLFSGPLLPSEVKKVMKLLWENEIELCSL 324

Query: 540  IFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNI 361
            I  +Q++     GE   +SMFF+E +LVPP +FR P K G  V+ HPQ+VLLSKV+Q+NI
Sbjct: 325  INCIQQQGF---GEKVGFSMFFLETVLVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANI 381

Query: 360  SLRNAYVNNSERSKLVPR-WMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFRQ 184
            SL NAY N+ + SK++ R WMDLQ ++N+LFDS+ A+ +    + GICQLLE+KEG+FRQ
Sbjct: 382  SLGNAYNNDLQSSKVIVRLWMDLQQSINLLFDSKTAMSQRRDVSPGICQLLERKEGMFRQ 441

Query: 183  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEV 4
            KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV K+R AIING+E+
Sbjct: 442  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKVREAIINGSEI 501

Query: 3    H 1
            H
Sbjct: 502  H 502


>ref|XP_010922210.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Elaeis
            guineensis]
          Length = 1674

 Score =  471 bits (1211), Expect = e-130
 Identities = 259/486 (53%), Positives = 323/486 (66%), Gaps = 13/486 (2%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLDS   PV  GLYD A+G   D   CKSCGQ S++CPGHCGHIDL  P+YNPLLF  L+
Sbjct: 40   LLDSKNAPVPDGLYDPAMGPINDTDSCKSCGQLSFRCPGHCGHIDLAKPLYNPLLFRNLQ 99

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGT-SFSEDEENDEGDTQFH 1063
            +LL+ TCF+C  F L+E KVQ YA QLDLI KGD+VGA  L   S+ E    D G+T+  
Sbjct: 100  NLLQITCFFCRRFRLNEEKVQRYAEQLDLIAKGDVVGARTLEAHSWGEYYFPDGGETE-- 157

Query: 1062 TDVCRSTTEDLVK-------HEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPT 904
                 ST E L+K         WTSLQYS A S+++ F++E  ++C  CG K   I SPT
Sbjct: 158  -SAVISTNESLLKITNLKQQQTWTSLQYSEAISIMSKFLREKSKKCANCGRKNPTITSPT 216

Query: 903  FGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPD-- 730
            FGWL K  ++ S +R N I G  L  S     E Q   G + + D +  T    E+P   
Sbjct: 217  FGWLNKA-MQASDIRTNFIIGYDLGLS---STEDQNAEGSQPRGDSASQTD---EEPSST 269

Query: 729  AELSGATAKEMPGISMEAHKNIKEHLPPEFFKQ--KEYFKGPFLPTEVKLLLKRLWENEA 556
            A++ G T K+    +++  K     LPPE  KQ      K   LP+EV+ +LK LW+N+A
Sbjct: 270  AKVEGKTKKQSR--NLQKTKKQSRDLPPEIAKQILSSGQKKHLLPSEVEAILKDLWKNQA 327

Query: 555  HLCNRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQ-VLSHPQSVLLSK 379
             +C  I D+QR++L+ SG +K Y+MFF++ LLVPP +FRPP  +G + VL HPQ+VLLSK
Sbjct: 328  KICALICDLQRRSLNASGRDKGYAMFFLKTLLVPPSKFRPPAGSGTRGVLEHPQNVLLSK 387

Query: 378  VVQSNISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKE 199
            V +SNI+LRN   +  +   +V RWMDLQ  VNVLFDS K   K ++E +GI QLLEKK 
Sbjct: 388  VQESNIALRNVITDGPDHPDIVRRWMDLQRNVNVLFDSTKGWVKTEREVNGIRQLLEKKA 447

Query: 198  GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAII 19
            GI RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNVNKLR+AII
Sbjct: 448  GILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRYAII 507

Query: 18   NGTEVH 1
            NG ++H
Sbjct: 508  NGADIH 513


>emb|CDP10074.1| unnamed protein product [Coffea canephora]
          Length = 1680

 Score =  466 bits (1200), Expect = e-128
 Identities = 250/484 (51%), Positives = 321/484 (66%), Gaps = 11/484 (2%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD+V RP+ GGLYD A+G F +   CKSCGQ S+ C GHCGHI+LV P YNPLLF +L 
Sbjct: 39   LLDTVGRPMPGGLYDPAMGPFDEQSPCKSCGQRSFHCTGHCGHIELVSPAYNPLLFNMLY 98

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDEENDEGDTQFHT 1060
            +LL++TCFYC HF  S  +V     QL+ I KGD++GA+ L  + S D +N E     H 
Sbjct: 99   NLLQRTCFYCFHFRSSTEEVDKCVLQLERIAKGDVIGAKRLDAASSADLDNSEDSEGSHV 158

Query: 1059 ---DVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLR 889
               +V     E + +  W S Q++ A SVLN F+K    +CG+C AK  KIK PTFGW  
Sbjct: 159  SCGNVYHGAEEHMKQPSWDSFQFTEAMSVLNMFLKPKLSKCGKCEAKNPKIKKPTFGWFH 218

Query: 888  KEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSG--SVEQPDAELSG 715
               + N+  RAN+IRG +LD            SG  E++  SE  +   S+ + D++ +G
Sbjct: 219  MV-VSNAETRANIIRGHRLDGFR---------SGGSEERSSSEVVNANDSLWEDDSQ-TG 267

Query: 714  ATAKEM--PGISMEAHK---NIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHL 550
             TA      GI     K   N    +  E  KQKE F    LP+EV+ ++KRLWENEA L
Sbjct: 268  KTASYTVSDGIDTPVAKKSPNQPGRVGEELKKQKEAFSEHLLPSEVRDVVKRLWENEAPL 327

Query: 549  CNRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQ 370
            C+ I D+QR+  + +     YSMFF++++LVPP +FRP  + G  V+ HP + LLSKV+Q
Sbjct: 328  CSFICDLQREQHNSAAGIAGYSMFFLDSILVPPIKFRPLARTGDAVMEHPHTNLLSKVLQ 387

Query: 369  SNISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETD-GICQLLEKKEGI 193
            SNI+L NAY+NN+ER K+V RWMDLQ +++VL+DS+    ++ K    GICQLLEKKEGI
Sbjct: 388  SNIALGNAYINNAERYKIVNRWMDLQQSISVLYDSKTTTGQSQKAGPVGICQLLEKKEGI 447

Query: 192  FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIING 13
            FRQKMMGKRVNFACRSVISPDPYLAVNEIG+PPYFALRLTYPE+VTPWNV KLR AI+NG
Sbjct: 448  FRQKMMGKRVNFACRSVISPDPYLAVNEIGVPPYFALRLTYPERVTPWNVGKLRGAIVNG 507

Query: 12   TEVH 1
             E+H
Sbjct: 508  PEIH 511


>gb|AIO05696.1| putative RNA polymerase AI large subunit, partial [Cocos nucifera]
          Length = 1669

 Score =  461 bits (1187), Expect = e-127
 Identities = 253/486 (52%), Positives = 311/486 (63%), Gaps = 13/486 (2%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLDS   PV  GLYD A+G   D   CKSCGQ S++CPGHCGHIDL   +YNPLLF  L+
Sbjct: 40   LLDSKNAPVPDGLYDPAMGPINDTDSCKSCGQLSFRCPGHCGHIDLAKQLYNPLLFRNLQ 99

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGT---SFSEDEENDEGDTQ 1069
            +LL+ TCF+CH F L+E KVQ YA QLDLI KGDIVGA  L      F E EE       
Sbjct: 100  NLLQITCFFCHRFRLNEEKVQRYAKQLDLIAKGDIVGARTLEARSWGFPEGEETKSAVI- 158

Query: 1068 FHTDVCRSTTEDLVK-------HEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKS 910
                   ST E L+K         WTSLQYS A S+++ F++E  ++C  CG K   I S
Sbjct: 159  -------STNESLLKITNLKQQQTWTSLQYSEALSIMSKFLREKSKKCANCGRKNPTITS 211

Query: 909  PTFGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPD 730
            PTFGWL K  ++ S +R N I G  L  S     E Q     + + D +  T    E+P 
Sbjct: 212  PTFGWLNKA-MQASDIRTNFIIGYDLGLS---STEDQNAEASQSRGDSASQTD---EEPS 264

Query: 729  AELSGATAKEMPGISMEAHKNIKEHLPPEFFKQ--KEYFKGPFLPTEVKLLLKRLWENEA 556
            +        +     ++  K     LPPE  KQ      K   LP+EV+ +LK LW+N+A
Sbjct: 265  SIAKVERKTKKQSRDLQKTKKQSMDLPPEIAKQMLSSGQKKHLLPSEVEAILKDLWKNQA 324

Query: 555  HLCNRIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQ-VLSHPQSVLLSK 379
             +C  + D+Q ++L+ SG +K Y+MFF++ LLVPP +FRPP  +G + VL HPQ+VLLSK
Sbjct: 325  KICALMCDLQHRSLNASGRDKGYAMFFLKTLLVPPSKFRPPAGSGTRGVLEHPQNVLLSK 384

Query: 378  VVQSNISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKE 199
            V +SNI+LRN   N  +   +V RWMDLQ  VNVLFDS K   K ++E +GI QLLEKK 
Sbjct: 385  VQESNIALRNVIANGPDHPDIVRRWMDLQRNVNVLFDSTKGWVKTEREVNGIRQLLEKKA 444

Query: 198  GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAII 19
            GI RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNVNKLR+AII
Sbjct: 445  GILRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRYAII 504

Query: 18   NGTEVH 1
            NG ++H
Sbjct: 505  NGADIH 510


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  458 bits (1178), Expect = e-126
 Identities = 237/482 (49%), Positives = 313/482 (64%), Gaps = 9/482 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD V RP+ GGLYD  LG   +   CK+CGQ  + CPGH GHIDLV+P+YNPLLF +L 
Sbjct: 38   LLDRVGRPLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLY 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDEENDEGDTQFHT 1060
            +LLK+ CF+CHHF  S  +V+    +L+LI+KGDI+ A++L      +  N E     + 
Sbjct: 98   TLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNK 157

Query: 1059 DVCRSTT--------EDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPT 904
              C   T         +L   EWTSLQ++ A+  L  F+K    +CG C AK  +I  PT
Sbjct: 158  SSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPT 217

Query: 903  FGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAE 724
            FGW+    + ++ +RAN+IRG  L ++          SG EE+KD     S  V+ P+  
Sbjct: 218  FGWIHMNGMPHADIRANLIRGCNLGETF---------SGGEEEKDLG--ASSDVDAPETH 266

Query: 723  LSGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCN 544
                T       +   H+     +P  F KQK+ F GP LP++VK ++++LWENE  LC+
Sbjct: 267  SFNGTFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS 326

Query: 543  RIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSN 364
             I D+Q++     G+   +S+FF+ A+LVPP +FR P K G  V+ HPQ+VLLSKV+Q+N
Sbjct: 327  FISDMQQQGF---GKKAGHSIFFLGAVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN 383

Query: 363  ISLRNAYVNNSERSKL-VPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFR 187
            I L NAYVN  + +K+ V RWM+LQ +VNVLFD + A  + D  + GICQLLEKKEG+FR
Sbjct: 384  IYLANAYVNQPDNAKIIVTRWMNLQQSVNVLFDGKNAAGQRDMAS-GICQLLEKKEGLFR 442

Query: 186  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTE 7
            QK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR +IING E
Sbjct: 443  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 502

Query: 6    VH 1
            +H
Sbjct: 503  IH 504


>ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Phoenix
            dactylifera]
          Length = 1665

 Score =  455 bits (1170), Expect = e-125
 Identities = 252/481 (52%), Positives = 307/481 (63%), Gaps = 8/481 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLDS    V  GLYD ALG   D   CKSCGQ S++CPGHCGHIDL  P+YNPLLF  L+
Sbjct: 40   LLDSKNASVPDGLYDPALGPINDTDSCKSCGQLSFRCPGHCGHIDLARPLYNPLLFRNLQ 99

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGT----SFSEDEENDEGDT 1072
            +LL+ TCF+C  F L+E KVQ YA QL LI KGDIVGA+ L       F    E +    
Sbjct: 100  NLLQITCFFCRKFRLNEEKVQRYAEQLCLIAKGDIVGAKTLEAHSWGEFYFPNEEETKSA 159

Query: 1071 QFHTDVCRSTTEDLVKHE-WTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGW 895
              HT    S   +L + + WTSLQ+S A S+L+ F++E  ++C  C  K   I SPTFGW
Sbjct: 160  AIHTSESLSKITNLKQQQTWTSLQHSEALSILSKFLREKSKKCANCSRKNPTITSPTFGW 219

Query: 894  LRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAELSG 715
            L K  I+ S +R+N I    L  S  ++          +  +GS+    S  Q D E S 
Sbjct: 220  LNKA-IQASDIRSNFIMESDLGLSSTED----------QNTEGSQSRGDSASQLDEEPSS 268

Query: 714  ATAKEMPGISMEAHKNIKEHLPPEFFKQ--KEYFKGPFLPTEVKLLLKRLWENEAHLCNR 541
             T  +         K     LPPE  KQ      K   LP+EV+ +LK LW NEA +C  
Sbjct: 269  ITKVQ------RKTKKQSRDLPPEIAKQMLSSGQKKHLLPSEVEAILKDLWNNEAKICAL 322

Query: 540  IFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQ-VLSHPQSVLLSKVVQSN 364
            I DVQR++L+  G +K Y+MFF++ LLVPP +FRPP  +G + VL HPQ+VLLSKV +SN
Sbjct: 323  ICDVQRRSLNRLGRDKGYAMFFLKTLLVPPSKFRPPAGSGTRGVLEHPQNVLLSKVQESN 382

Query: 363  ISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFRQ 184
            I+LRN   N  +   +V  WMDLQ  VN+LFDS K   K ++E +GI QLLEKK GI RQ
Sbjct: 383  IALRNVIANGPDHPDIVRSWMDLQRNVNLLFDSSKGWVKTEREVNGIRQLLEKKAGILRQ 442

Query: 183  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEV 4
            KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNVNKLRHAIING ++
Sbjct: 443  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVNKLRHAIINGADI 502

Query: 3    H 1
            H
Sbjct: 503  H 503


>ref|XP_009394527.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Musa
            acuminata subsp. malaccensis]
          Length = 1641

 Score =  454 bits (1167), Expect = e-124
 Identities = 251/482 (52%), Positives = 306/482 (63%), Gaps = 9/482 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD+   P+  GLYD ALG   D   CKSCGQ S +CPGHCGHIDL  P+YNPLLF  L+
Sbjct: 36   LLDAKNSPIPDGLYDPALGPLNDNDSCKSCGQLSVRCPGHCGHIDLAKPLYNPLLFKTLQ 95

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTS------FSEDEENDEG 1078
             LL+ TCF+CH F ++E KV+ Y +QLDLI+KGDI GA +L  +      F E+E  +  
Sbjct: 96   GLLQITCFFCHKFKINEEKVKRYVAQLDLIVKGDINGARSLEANTWSEIFFPEEETAESI 155

Query: 1077 DTQFHTDVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFG 898
             + F     +  T       WTSLQ S A S+ + FM+E  ++C  CG K   I SP FG
Sbjct: 156  TSNFDNANSKHLT-------WTSLQQSEALSIFSKFMRERRKKCDNCGKKNPTINSPIFG 208

Query: 897  WLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAELS 718
            WL K   E S +RAN I    LDQS                   SE    S+ Q      
Sbjct: 209  WLNKTTQE-SDIRANFILDSSLDQS------------------SSEAKYSSITQS----R 245

Query: 717  GATAKEMPGISMEAHKNIK-EHLPPEFFKQKEYF-KGPFLPTEVKLLLKRLWENEAHLCN 544
            G +A EM   S  + K +K   LPPEF KQ     +   LP+EV+ +L  LW+NEA+LC 
Sbjct: 246  GESASEMDEESPLSKKKVKLGDLPPEFIKQMSSSGQKHLLPSEVEFILNNLWKNEANLCM 305

Query: 543  RIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQ-VLSHPQSVLLSKVVQS 367
             I D+  KNLSIS  NK ++MFF++ LL+PP +FRP   + G+ VL HPQ+ LLSKV Q+
Sbjct: 306  LISDIHCKNLSISRGNKGFAMFFLKTLLIPPSKFRPAAGSSGRGVLEHPQNTLLSKVQQA 365

Query: 366  NISLRNAYVNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFR 187
            NI+L+N  V N +   ++  WMDLQ  VNVLFDS K   K+DKE  GI QLLEKK GI R
Sbjct: 366  NIALKNCIVANPDHPDILRSWMDLQKCVNVLFDSTKGFAKSDKEASGIRQLLEKKSGILR 425

Query: 186  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTE 7
            QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYF+LRLTYPE+VTPWNVNKLR AIING +
Sbjct: 426  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFSLRLTYPERVTPWNVNKLRCAIINGAD 485

Query: 6    VH 1
            +H
Sbjct: 486  IH 487


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  454 bits (1167), Expect = e-124
 Identities = 235/482 (48%), Positives = 311/482 (64%), Gaps = 9/482 (1%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD V RP+ GGLYD  LG   +   CK+CGQ  + CPGH GHIDLV+ +YNPLLF +L 
Sbjct: 38   LLDRVSRPLPGGLYDPILGPLDETSSCKTCGQRQFLCPGHFGHIDLVVSVYNPLLFNLLY 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDEENDEGDTQFHT 1060
            +LLK+ CF+CHHF  S  +V+    +L+LI+KGDI+ A++L      +  N E     + 
Sbjct: 98   TLLKRICFFCHHFKASRREVEKCVRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNK 157

Query: 1059 DVCRSTT--------EDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPT 904
              C   T         +L   EWTSLQ++ A+  L  F+K    +CG C AK  +I  PT
Sbjct: 158  SSCSMVTPRGNYDNVRNLKPQEWTSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPT 217

Query: 903  FGWLRKEPIENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAE 724
            FGW+    + ++ +RAN+IRG  L ++          SG EE+KD    TS  V+ P+  
Sbjct: 218  FGWIHMNGMPHADIRANLIRGCNLGETF---------SGGEEEKDLG--TSSDVDAPETH 266

Query: 723  LSGATAKEMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCN 544
                        +   H+     +P  F KQK+ F GP LP++VK ++++LWENE  LC+
Sbjct: 267  SFNGAFPGTQDTAARRHQKGSGAVPSGFKKQKDLFSGPLLPSDVKDIIEKLWENEFELCS 326

Query: 543  RIFDVQRKNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSN 364
             I D+Q++     G+   +S+FF+  +LVPP +FR P K G  V+ HPQ+VLLSKV+Q+N
Sbjct: 327  FISDMQQQGF---GKKAGHSIFFLGVVLVPPIKFRLPSKGGDSVMEHPQTVLLSKVLQAN 383

Query: 363  ISLRNAYVNNSERSK-LVPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFR 187
            I L NAYVN  + +K +V RWM+LQ +VNVLFD + A  + D  + GICQLLEKKEG+FR
Sbjct: 384  IYLANAYVNQPDNAKVIVARWMNLQQSVNVLFDGKNAAGQRDVAS-GICQLLEKKEGLFR 442

Query: 186  QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTE 7
            QK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR +IING E
Sbjct: 443  QKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDSIINGAE 502

Query: 6    VH 1
            +H
Sbjct: 503  IH 504


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score =  450 bits (1158), Expect = e-123
 Identities = 234/474 (49%), Positives = 308/474 (64%), Gaps = 1/474 (0%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD+V RPV GGLYD  +G   D   CKSCGQ S  CPGHCGHI+LV PIY+PLLF +L 
Sbjct: 40   LLDNVERPVPGGLYDPLMGPLDDRTSCKSCGQLSLVCPGHCGHIELVYPIYHPLLFNLLY 99

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDEENDEGDTQFHT 1060
            + L++TCF+CHHFM ++N V+   SQL LI+KG++V A+ L +  ++  E  E D++   
Sbjct: 100  NFLQRTCFFCHHFMANKNDVERCVSQLKLIMKGNLVAAKQLDSRATDSSEECE-DSEMEK 158

Query: 1059 DVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLRKEP 880
            + C  +  D+ K  WTSLQ++    ++NTF++   + CG C AK  K++ P FGW+R   
Sbjct: 159  ERCEDS--DMGKQRWTSLQFAEVTDLMNTFLRLKSKSCGSCKAKPPKLEKPMFGWVRIVG 216

Query: 879  IENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQP-DAELSGATAK 703
            +  SA+ ANVIRG+K+ +S                       + SVE P D++ SG  A 
Sbjct: 217  MSASAIGANVIRGIKVKKS-----------------------ASSVENPNDSDDSGIDAL 253

Query: 702  EMPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNRIFDVQR 523
                   E  K     +  EF K +   +    P+EVK +LK LWENE   C+ I D+ +
Sbjct: 254  SEVEDGSEKKKRKSSEVAEEFAKHQNNTRRDLFPSEVKKILKGLWENEHEFCSFIGDLWQ 313

Query: 522  KNLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNISLRNAY 343
                   EN  YSMFF+E +LVPP +FR P K G  V+ HPQ+V L+KV++SNISL NA 
Sbjct: 314  SE----SENVDYSMFFLENILVPPTKFRAPTKGGDSVMEHPQTVGLNKVLESNISLGNAC 369

Query: 342  VNNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETDGICQLLEKKEGIFRQKMMGKRV 163
             N  ++ K++ RWM+LQ +VNVLFDS+ A  K+ KE  GICQ LEKKEG+FRQKMMGKRV
Sbjct: 370  TNKLDQPKIISRWMNLQESVNVLFDSKTATVKSQKEGTGICQTLEKKEGLFRQKMMGKRV 429

Query: 162  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEVH 1
            N ACRSVISPDP++AVN+IGIPP FAL+LTYPE+VTPWNV KLR AIING ++H
Sbjct: 430  NHACRSVISPDPFIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIH 483


>ref|XP_011652120.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [Cucumis
            sativus] gi|778684907|ref|XP_011652121.1| PREDICTED:
            DNA-directed RNA polymerase I subunit RPA1 [Cucumis
            sativus] gi|700204204|gb|KGN59337.1| hypothetical protein
            Csa_3G811600 [Cucumis sativus]
          Length = 1681

 Score =  448 bits (1152), Expect = e-123
 Identities = 242/474 (51%), Positives = 301/474 (63%), Gaps = 1/474 (0%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + RPV GGLYD A+GS  +  LCKSCGQ  + CPGHCGHIDLV P+YNPLLF +L 
Sbjct: 38   LLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDEENDEGDTQFHT 1060
            + L+ TCF CHHF   E+ V++  + L+LIL G+I  A+ L     E+  N +  T+   
Sbjct: 98   NFLRCTCFSCHHFRAGESMVENCKTLLELILDGEIAKAKEL----EEEWMNSKSRTKSSH 153

Query: 1059 DVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLRKEP 880
             +     ++     WTSLQ+S A SV+  F+K     C  CGAK+ KI  PTFGW   + 
Sbjct: 154  SMYTYERKNGQPETWTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKG 213

Query: 879  IENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAELSGATAKE 700
            +     RAN IR  K            PVS       G+E  S   E+   E   AT ++
Sbjct: 214  LAGVQKRANAIRRSK------------PVS----VSSGAEGVSSLEEETTTE---ATVED 254

Query: 699  MPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNRIFDVQRK 520
               +S            PE F QK +  G  LP+EVK +LKRLW+NEA LC+ I D+ ++
Sbjct: 255  FEDVS------------PEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQ 302

Query: 519  NLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNISLRNAYV 340
                 G    +SMFF+E++LVPP +FRPP K G  V+ HPQ+VLL+KV+QSNISL N + 
Sbjct: 303  G---HGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHA 359

Query: 339  NNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETD-GICQLLEKKEGIFRQKMMGKRV 163
            N SE SK+V  WMDLQ ++N+LFDS+ A      +   GICQLLEKKEG+FRQKMMGKRV
Sbjct: 360  NKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRV 419

Query: 162  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEVH 1
            NFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VT WNV KLR+AIING E H
Sbjct: 420  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETH 473


>ref|XP_008443105.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            rpa1 [Cucumis melo]
          Length = 1681

 Score =  447 bits (1149), Expect = e-122
 Identities = 239/474 (50%), Positives = 300/474 (63%), Gaps = 1/474 (0%)
 Frame = -3

Query: 1419 LLDSVLRPVEGGLYDMALGSFQDGQLCKSCGQGSWQCPGHCGHIDLVLPIYNPLLFPVLR 1240
            LLD + RPV GGLYD A+GS  +  LCKSCGQ  + CPGHCGHIDLV P+YNPLLF  L 
Sbjct: 38   LLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVTLH 97

Query: 1239 SLLKKTCFYCHHFMLSENKVQHYASQLDLILKGDIVGAENLGTSFSEDEENDEGDTQFHT 1060
            + L+ TCF CHHF   E  V+   + L+LIL G++  A+ L   + +     +     +T
Sbjct: 98   NFLRCTCFSCHHFRAGEFMVEKCKTLLELILDGEVAKAKELEDEWLDSTSRTKSSHAMYT 157

Query: 1059 DVCRSTTEDLVKHEWTSLQYSLARSVLNTFMKENYRQCGRCGAKAAKIKSPTFGWLRKEP 880
                   +++    WTSLQ+S A SV+N F+K     C  CGAK  KI  PTFGWL  + 
Sbjct: 158  ----YERKNVQPKTWTSLQFSEAMSVVNRFLKPKQSNCKYCGAKNPKITKPTFGWLHSKG 213

Query: 879  IENSAVRANVIRGVKLDQSLIDEAEKQPVSGLEEQKDGSEYTSGSVEQPDAELSGATAKE 700
            +  +  RAN IR  K            PVS       G+E  S   E+   E   AT ++
Sbjct: 214  LTGAHKRANAIRRSK------------PVS----VSSGAEGVSSLEEETTTE---ATVED 254

Query: 699  MPGISMEAHKNIKEHLPPEFFKQKEYFKGPFLPTEVKLLLKRLWENEAHLCNRIFDVQRK 520
               +S            PE F QK +  G  LP+EVK +LKRLW+NEA LC+ I D+ ++
Sbjct: 255  SEDVS------------PEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQ 302

Query: 519  NLSISGENKSYSMFFIEALLVPPCRFRPPCKNGGQVLSHPQSVLLSKVVQSNISLRNAYV 340
                +G    +SMFF+E++LVPP +FRPP K G  ++ HPQ+VLL+KV+QSNISL N + 
Sbjct: 303  G---NGNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHA 359

Query: 339  NNSERSKLVPRWMDLQLAVNVLFDSRKAIRKADKETD-GICQLLEKKEGIFRQKMMGKRV 163
            N  E S++V  WMDLQ ++N+LFDS+ A     K+   GICQLLEKKEG+FRQKMMGKRV
Sbjct: 360  NKLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRV 419

Query: 162  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVNKLRHAIINGTEVH 1
            NFACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VT WNV KLR+AIING E H
Sbjct: 420  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETH 473