BLASTX nr result

ID: Cinnamomum24_contig00017762 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00017762
         (588 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002457951.1| hypothetical protein SORBIDRAFT_03g023051 [S...    60   6e-07
ref|XP_011465143.1| PREDICTED: uncharacterized protein LOC101299...    57   8e-06
gb|ABD63139.1| Reverse transcriptase family protein [Asparagus o...    54   8e-06

>ref|XP_002457951.1| hypothetical protein SORBIDRAFT_03g023051 [Sorghum bicolor]
            gi|241929926|gb|EES03071.1| hypothetical protein
            SORBIDRAFT_03g023051, partial [Sorghum bicolor]
          Length = 979

 Score = 60.5 bits (145), Expect = 6e-07
 Identities = 42/127 (33%), Positives = 55/127 (43%)
 Frame = -1

Query: 381  PKEAFKYDLVEHFKHIPARLHILDLLRMSPRTRDNLISELQKLNEDVDKHAPQVFQIEMD 202
            P  + KYD++ H K IPA L + D L +S   R+ LI+ L                I  D
Sbjct: 846  PNVSVKYDVISHLKKIPAMLSVYDALCLSSDLRNGLITAL---------------SIPED 890

Query: 201  YRVRNAXXXXXXXXXXXEGSCSRCLSGQKITSATIAFTKEDLLLGETKHNRPLYFTGYIK 22
            YRV  +                         + +I F  EDLLLG  KHNRPL+  G I 
Sbjct: 891  YRVEVSQAEVKLP-----------------QTQSITFNDEDLLLGNKKHNRPLFMFGEID 933

Query: 21   EMPVLRI 1
            ++PV RI
Sbjct: 934  DLPVNRI 940


>ref|XP_011465143.1| PREDICTED: uncharacterized protein LOC101299390 [Fragaria vesca
           subsp. vesca]
          Length = 1884

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 36/123 (29%), Positives = 55/123 (44%)
 Frame = -1

Query: 369 FKYDLVEHFKHIPARLHILDLLRMSPRTRDNLISELQKLNEDVDKHAPQVFQIEMDYRVR 190
           +KYD++ H K +PA L + + L+MS   R+ LI  L           P +++ E++    
Sbjct: 275 YKYDVLAHLKRVPATLSVFEALQMSRELREALIEALT---------CPDIYKDEIEEVAV 325

Query: 189 NAXXXXXXXXXXXEGSCSRCLSGQKITSATIAFTKEDLLLGETKHNRPLYFTGYIKEMPV 10
                           C  C          I F ++DLLLG   HNRPLY TG + +  +
Sbjct: 326 TTPRVCI--------GCKEC----------IMFCEDDLLLGSEYHNRPLYVTGLVGDTML 367

Query: 9   LRI 1
           +RI
Sbjct: 368 IRI 370


>gb|ABD63139.1| Reverse transcriptase family protein [Asparagus officinalis]
          Length = 1181

 Score = 53.5 bits (127), Expect(2) = 8e-06
 Identities = 37/133 (27%), Positives = 69/133 (51%)
 Frame = -1

Query: 399 NGERAGPKEAFKYDLVEHFKHIPARLHILDLLRMSPRTRDNLISELQKLNEDVDKHAPQV 220
           +GE + P   F+++++    +IPAR+ + +LLR+S  T++ LI  L+     + +  P V
Sbjct: 87  HGESSNP---FQFNVMAQLANIPARITLYELLRLSKTTKEALIEALKNTESFITQVIP-V 142

Query: 219 FQIEMDYRVRNAXXXXXXXXXXXEGSCSRCLSGQKITSATIAFTKEDLLLGETKHNRPLY 40
            +   D                   +C +CL   + +   I+FT+ED+ + + +H+RPLY
Sbjct: 143 PETSDDQ------------------TCLQCLQAAR-SLPCISFTQEDMQV-KHEHDRPLY 182

Query: 39  FTGYIKEMPVLRI 1
           +TGYI    + R+
Sbjct: 183 YTGYIGSSEISRV 195



 Score = 22.7 bits (47), Expect(2) = 8e-06
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 502 GTRSGRDYHKNYDQ 461
           GTRSG+ Y K+Y Q
Sbjct: 35  GTRSGKAYLKDYGQ 48


Top