BLASTX nr result
ID: Cinnamomum24_contig00011819
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00011819
(848 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedice... 394 e-107
ref|YP_008963385.1| RNA polymerase beta (chloroplast) [Sedum sar... 370 e-100
prf||1211235Q rpoC-like ORF 548 369 1e-99
ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subun... 369 1e-99
gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (ch... 367 4e-99
gb|AHF71998.1| DNA-directed RNA polymerase beta' chain (chloropl... 367 7e-99
gb|AHE41641.1| RNA polymerase beta' subunit protein, partial (ch... 367 7e-99
ref|YP_009144506.1| RNA polymerase beta' subunit (chloroplast) [... 365 2e-98
gb|AHH80690.1| RNA polymerase beta [Gossypium laxum] 365 2e-98
ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [... 365 2e-98
gb|AHE41645.1| RNA polymerase beta' subunit protein, partial (ch... 364 3e-98
gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (ch... 364 3e-98
ref|YP_009132930.1| RNA polymerase beta' subunit (chloroplast) [... 364 4e-98
ref|YP_009144618.1| RNA polymerase beta' subunit (chloroplast) [... 363 6e-98
ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum... 363 6e-98
ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum in... 363 6e-98
ref|YP_008992455.1| RNA polymerase beta (chloroplast) [Gossypium... 363 8e-98
ref|YP_004285995.1| RNA polymerase beta [Gossypium thurberi] gi|... 363 8e-98
ref|YP_009115886.1| RNA polymerase beta [Scrophularia takesimens... 363 1e-97
gb|AII17896.1| RNA polymerase beta subunit, partial (chloroplast... 362 1e-97
>gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedicellaris]
Length = 718
Score = 394 bits (1013), Expect = e-107
Identities = 199/249 (79%), Positives = 210/249 (84%), Gaps = 1/249 (0%)
Frame = -3
Query: 744 FFIWCNYLSRMRGNHHVRF*RGD-PIGTYPNFSFARPIAKKPTFLRLRGLFESEIQSWKY 568
FFIWC YLSRM+GN HVRF RG PI +YPNFSFARPI KKPTFLRLRGLFE EIQSWKY
Sbjct: 152 FFIWCTYLSRMKGNIHVRFRRGGAPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKY 211
Query: 567 SIPLFFTTPGFDTFRNREISTGAGAIREQLADPDLRIIIDHSSVEWKELGEEGFTGNEWE 388
SIPLFFTT GFDTFRNREISTGAGAIREQLAD DLRI+I++S +EWK+LGEE TGNEWE
Sbjct: 212 SIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIVIENSLLEWKDLGEEEHTGNEWE 271
Query: 387 DRKIGRRKDFLVRRMELAKHFIRTNVEPEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDIN 208
DRK+GRRKDFLVRRMELAKHF+RTN+EPEWMV PIIQIDGGKLMSSDIN
Sbjct: 272 DRKVGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDIN 331
Query: 207 ELYRRVIYXXXXXXXXXXXXXXTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 28
ELYRRVIY TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVY
Sbjct: 332 ELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 391
Query: 27 KSFSDVIEG 1
KSFSD+IEG
Sbjct: 392 KSFSDLIEG 400
>ref|YP_008963385.1| RNA polymerase beta (chloroplast) [Sedum sarmentosum]
gi|402797520|gb|AFQ99052.1| RNA polymerase beta
(chloroplast) [Sedum sarmentosum]
Length = 552
Score = 370 bits (950), Expect = e-100
Identities = 187/227 (82%), Positives = 193/227 (85%)
Frame = -3
Query: 681 GDPIGTYPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTG 502
GDP G+YPNFSFARPIAKKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTG
Sbjct: 6 GDPTGSYPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG 65
Query: 501 AGAIREQLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFI 322
AGAIREQLAD DLR+IID+S VEWKELGEE TGNEW+DRKIGRR DFLVRRMELAKHF+
Sbjct: 66 AGAIREQLADLDLRLIIDYSLVEWKELGEETLTGNEWQDRKIGRRNDFLVRRMELAKHFL 125
Query: 321 RTNVEPEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXX 142
RTN+EPEWMV PIIQIDGGKLMSSDINELYRRVIY
Sbjct: 126 RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTRSVS 185
Query: 141 TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 186 TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 232
>prf||1211235Q rpoC-like ORF 548
Length = 548
Score = 369 bits (948), Expect = 1e-99
Identities = 187/227 (82%), Positives = 194/227 (85%)
Frame = -3
Query: 681 GDPIGTYPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTG 502
GDPI +YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTG
Sbjct: 3 GDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG 62
Query: 501 AGAIREQLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFI 322
AGAIREQLAD DLRIII++S VEW+ELGEEG TGNEWEDRK+GRRKDFLVRR+ELAKHFI
Sbjct: 63 AGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNEWEDRKVGRRKDFLVRRVELAKHFI 122
Query: 321 RTNVEPEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXX 142
RTN+EPEWMV PIIQIDGGKLMSSDINELYRRVIY
Sbjct: 123 RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRS 182
Query: 141 TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 183 TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 229
>ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like [Solanum
tuberosum]
Length = 581
Score = 369 bits (948), Expect = 1e-99
Identities = 187/227 (82%), Positives = 194/227 (85%)
Frame = -3
Query: 681 GDPIGTYPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTG 502
GDPI +YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTG
Sbjct: 36 GDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG 95
Query: 501 AGAIREQLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFI 322
AGAIREQLAD DLRIII++S VEW+ELGEEG TGNEWEDRK+GRRKDFLVRR+ELAKHFI
Sbjct: 96 AGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNEWEDRKVGRRKDFLVRRVELAKHFI 155
Query: 321 RTNVEPEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXX 142
RTN+EPEWMV PIIQIDGGKLMSSDINELYRRVIY
Sbjct: 156 RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRS 215
Query: 141 TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 216 TPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 262
>gb|AHE41637.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Daphniphyllum oldhamii]
Length = 639
Score = 367 bits (943), Expect = 4e-99
Identities = 188/221 (85%), Positives = 190/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRG FE EIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 183
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRIIID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 184 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 243
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLGLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 303
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 304 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 344
>gb|AHF71998.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Rosa odorata
var. gigantea]
Length = 684
Score = 367 bits (941), Expect = 7e-99
Identities = 186/221 (84%), Positives = 190/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRG FE EIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 205
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRIIID+S +EWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 206 QLADLDLRIIIDYSLLEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 265
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELV 325
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 366
>gb|AHE41641.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Disanthus cercidifolius subsp. longipes]
Length = 621
Score = 367 bits (941), Expect = 7e-99
Identities = 188/221 (85%), Positives = 190/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 108 YPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 167
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRIIID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 168 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 227
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 228 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 287
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 288 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 328
>ref|YP_009144506.1| RNA polymerase beta' subunit (chloroplast) [Rosmarinus officinalis]
gi|827345135|gb|AKJ76719.1| RNA polymerase beta' subunit
(chloroplast) [Rosmarinus officinalis]
Length = 691
Score = 365 bits (937), Expect = 2e-98
Identities = 184/221 (83%), Positives = 190/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE
Sbjct: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 212
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRII+++S VEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHF+RTN+EP
Sbjct: 213 QLADLDLRIILENSLVEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEP 272
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 273 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 332
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 333 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 373
>gb|AHH80690.1| RNA polymerase beta [Gossypium laxum]
Length = 690
Score = 365 bits (937), Expect = 2e-98
Identities = 186/223 (83%), Positives = 190/223 (85%)
Frame = -3
Query: 669 GTYPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAI 490
G YPNFSFARPIAKKPTFLRLRG FE EIQSWKYSIPLFFTT GFDTFR+REISTGAGAI
Sbjct: 145 GPYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRSREISTGAGAI 204
Query: 489 REQLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNV 310
REQLAD DLRI+ID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+
Sbjct: 205 REQLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNI 264
Query: 309 EPEWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGE 130
EPEWMV PIIQIDGGKLMSSDINELYRRVIY TPGE
Sbjct: 265 EPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGE 324
Query: 129 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 325 LVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 367
>ref|YP_007507102.1| RNA polymerase beta' subunit (chloroplast) [Salvia miltiorrhiza]
gi|401879733|gb|AFQ30920.1| RNA polymerase beta' subunit
(chloroplast) [Salvia miltiorrhiza]
Length = 691
Score = 365 bits (937), Expect = 2e-98
Identities = 184/221 (83%), Positives = 190/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE
Sbjct: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 212
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRII+++S VEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHF+RTN+EP
Sbjct: 213 QLADLDLRIILENSLVEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEP 272
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 273 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 332
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 333 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 373
>gb|AHE41645.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Kalanchoe laciniata]
Length = 639
Score = 364 bits (935), Expect = 3e-98
Identities = 185/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 183
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLR+IID+S VEWKELGEE TGNEWEDRKIGRRKDFLVRRMELAKHF+RTN+EP
Sbjct: 184 QLADLDLRLIIDYSLVEWKELGEEALTGNEWEDRKIGRRKDFLVRRMELAKHFLRTNIEP 243
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSVSTPGELV 303
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 304 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 344
>gb|AHE41634.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Hamamelis mollis]
Length = 639
Score = 364 bits (935), Expect = 3e-98
Identities = 187/221 (84%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTGA AIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAAAIRE 183
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRIIID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 184 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 243
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 244 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 303
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 304 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 344
>ref|YP_009132930.1| RNA polymerase beta' subunit (chloroplast) [Hibiscus syriacus]
gi|802085260|gb|AKA94854.1| RNA polymerase beta' subunit
(chloroplast) [Hibiscus syriacus]
Length = 689
Score = 364 bits (934), Expect = 4e-98
Identities = 185/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRG F+ EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFDYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 205
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRI+ID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 206 QLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 265
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 325
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 366
>ref|YP_009144618.1| RNA polymerase beta' subunit (chloroplast) [Scutellaria
baicalensis] gi|827345831|gb|AKJ77132.1| RNA polymerase
beta' subunit (chloroplast) [Scutellaria baicalensis]
Length = 691
Score = 363 bits (933), Expect = 6e-98
Identities = 184/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE
Sbjct: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 212
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRII+D+S VEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHF+RTN+EP
Sbjct: 213 QLADLDLRIILDNSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEP 272
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 273 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 332
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQP RDGHNKVYKSFSDVIEG
Sbjct: 333 MCQEKLVQEAVDTLLDNGIRGQPTRDGHNKVYKSFSDVIEG 373
>ref|YP_008963471.1| RNA polymerase beta (chloroplast) [Penthorum chinense]
gi|403226772|gb|AFR25651.1| RNA polymerase beta
(chloroplast) [Penthorum chinense]
Length = 686
Score = 363 bits (933), Expect = 6e-98
Identities = 185/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 205
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QL+D DLR+IID+S VEWKELGEEG GNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 206 QLSDLDLRLIIDYSLVEWKELGEEGTAGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 265
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 325
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 366
>ref|YP_004935657.1| rpoC1 gene product (chloroplast) [Sesamum indicum]
gi|347448286|gb|AEO92697.1| RNA polymerase beta' subunit
(chloroplast) [Sesamum indicum]
Length = 691
Score = 363 bits (933), Expect = 6e-98
Identities = 184/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 212
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRII+D+S VEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHF+RTN+EP
Sbjct: 213 QLADLDLRIILDNSLVEWKELGEEGTTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEP 272
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 273 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 332
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 333 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 373
>ref|YP_008992455.1| RNA polymerase beta (chloroplast) [Gossypium anomalum]
gi|570758959|ref|YP_008992541.1| RNA polymerase beta
(chloroplast) [Gossypium bickii]
gi|570759047|ref|YP_008992886.1| RNA polymerase beta
(chloroplast) [Gossypium sturtianum]
gi|570759567|ref|YP_008992628.1| RNA polymerase beta
(chloroplast) [Gossypium herbaceum]
gi|570759654|ref|YP_008992714.1| RNA polymerase beta
(chloroplast) [Gossypium longicalyx]
gi|570879904|ref|YP_008992800.1| RNA polymerase beta
(chloroplast) [Gossypium stocksii]
gi|813559028|ref|YP_009130830.1| RNA polymerase beta
(chloroplast) [Gossypium turneri]
gi|326457030|gb|ADZ74294.1| RNA polymerase beta
[Gossypium anomalum] gi|326457118|gb|ADZ74381.1| RNA
polymerase beta [Gossypium bickii]
gi|326457206|gb|ADZ74468.1| RNA polymerase beta
[Gossypium herbaceum] gi|326457293|gb|ADZ74554.1| RNA
polymerase beta [Gossypium longicalyx]
gi|326457379|gb|ADZ74639.1| RNA polymerase beta
[Gossypium stocksii] gi|326457467|gb|ADZ74726.1| RNA
polymerase beta [Gossypium sturtianum]
gi|384034855|gb|AFH57568.1| RNA polymerase beta
(chloroplast) [Gossypium turneri]
Length = 689
Score = 363 bits (932), Expect = 8e-98
Identities = 185/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRG FE EIQSWKYSIPLFFTT GFDTFR+REISTGAGAIRE
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRSREISTGAGAIRE 205
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRI+ID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 206 QLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 265
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 325
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 366
>ref|YP_004285995.1| RNA polymerase beta [Gossypium thurberi]
gi|290775783|gb|ADD62279.1| RNA polymerase beta
[Gossypium thurberi]
Length = 689
Score = 363 bits (932), Expect = 8e-98
Identities = 185/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPIAKKPTFLRLRG FE EIQSWKYSIPLFFTT GFDTFR+REISTGAGAIRE
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRSREISTGAGAIRE 205
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRI+ID+S VEWKELGEEG TGNEWEDRKIGRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 206 QLADLDLRILIDYSVVEWKELGEEGLTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 265
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 325
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 366
>ref|YP_009115886.1| RNA polymerase beta [Scrophularia takesimensis]
gi|744673730|gb|AJD00715.1| RNA polymerase beta
[Scrophularia takesimensis]
Length = 684
Score = 363 bits (931), Expect = 1e-97
Identities = 184/221 (83%), Positives = 189/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPI KKPTFLRLRGLFE EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 146 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 205
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRII+D+S VEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHF+RTN+EP
Sbjct: 206 QLADLDLRIILDNSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFLRTNIEP 265
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 266 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 325
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 326 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 366
>gb|AII17896.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum tinus]
Length = 540
Score = 362 bits (930), Expect = 1e-97
Identities = 185/221 (83%), Positives = 188/221 (85%)
Frame = -3
Query: 663 YPNFSFARPIAKKPTFLRLRGLFESEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIRE 484
YPNFSFARPI KKPTFLRLRG FE EIQSWKYSIPLFFTT GFDTFRNREISTGAGAIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 483 QLADPDLRIIIDHSSVEWKELGEEGFTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEP 304
QLAD DLRIIID+S VEWKELGEEG TGNEWEDRK+GRRKDFLVRRMELAKHFIRTN+EP
Sbjct: 61 QLADLDLRIIIDYSLVEWKELGEEGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 120
Query: 303 EWMVXXXXXXXXXXXXPIIQIDGGKLMSSDINELYRRVIYXXXXXXXXXXXXXXTPGELV 124
EWMV PIIQIDGGKLMSSDINELYRRVIY TPGELV
Sbjct: 121 EWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELV 180
Query: 123 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 1
MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG
Sbjct: 181 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEG 221