BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00008837
         (1464 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010255160.1| PREDICTED: pentatricopeptide repeat-containi...   434   e-118
emb|CBI37948.3| unnamed protein product [Vitis vinifera]              403   e-109
ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containi...   403   e-109
ref|XP_010255161.1| PREDICTED: pentatricopeptide repeat-containi...   402   e-109
ref|XP_007041957.1| Pentatricopeptide repeat-containing protein,...   391   e-106
ref|XP_002306163.2| hypothetical protein POPTR_0004s17400g [Popu...   377   e-101
ref|XP_011037246.1| PREDICTED: pentatricopeptide repeat-containi...   372   e-100
ref|XP_011037244.1| PREDICTED: pentatricopeptide repeat-containi...   372   e-100
ref|XP_006494588.1| PREDICTED: pentatricopeptide repeat-containi...   369   4e-99
ref|XP_006494587.1| PREDICTED: pentatricopeptide repeat-containi...   369   4e-99
gb|KHF99163.1| Pentatricopeptide repeat-containing protein [Goss...   363   2e-97
gb|KHF99162.1| Pentatricopeptide repeat-containing protein, chlo...   363   2e-97
ref|XP_012442077.1| PREDICTED: pentatricopeptide repeat-containi...   362   4e-97
gb|KJB11196.1| hypothetical protein B456_001G246900 [Gossypium r...   362   4e-97
ref|XP_012442072.1| PREDICTED: pentatricopeptide repeat-containi...   362   4e-97
ref|XP_010088683.1| hypothetical protein L484_003235 [Morus nota...   362   5e-97
ref|XP_012084399.1| PREDICTED: pentatricopeptide repeat-containi...   361   7e-97
ref|XP_002534048.1| pentatricopeptide repeat-containing protein,...   360   2e-96
ref|XP_012442074.1| PREDICTED: pentatricopeptide repeat-containi...   359   3e-96
ref|XP_010920272.1| PREDICTED: pentatricopeptide repeat-containi...   354   9e-95

>ref|XP_010255160.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X1 [Nelumbo nucifera]
          Length = 1161

 Score =  434 bits (1115), Expect = e-118
 Identities = 254/493 (51%), Positives = 323/493 (65%), Gaps = 15/493 (3%)
 Frame = -2

Query: 1436 TTLEEMKHVFED-SENGHV-VDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVLSSFSNN 1263
            T  EE+K +FE+ SE GH  ++ E  L +   + L  E     + S   +   + S  ++
Sbjct: 189  TPAEELKAIFEETSEKGHNNLEKEVQLSQFKKTALMFEESPFTEASE--LSYSVCSTKSS 246

Query: 1262 GFAQTEEDMGHILSPGMINEVDVLAPESFVIDMPDLLCRGGVEE----TEIRPKVHDVRS 1095
               +  E M   LS  ++ E        F  DMP+L+ +G  EE    +E+   + D +S
Sbjct: 247  ILTKETESMDPTLSSPVLGESASGEKVRFAKDMPELVLKGYQEEAVPWSELSGLLVDPKS 306

Query: 1094 ------KHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSK-YVREDIYSFCEETQSGR 936
                  KH   E S +     EL DE   GE QVS++NG  +   RE+I++F EE QSG 
Sbjct: 307  SSVIHLKHVPAEVSQEHQFKNELDDE---GEVQVSTYNGFFRPSFREEIHTFYEENQSGV 363

Query: 935  RILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAFYK 756
            R +S F     + PH  L  N++ S LL    L+GAE S + L + T+Y + ++P++ YK
Sbjct: 364  RSISNFSSLKTVPPHISLNSNSNFSSLLRTNMLSGAEVS-EGLHNTTDYHERKMPLSCYK 422

Query: 755  DLSASKRRDSVKPGGVSRDRGLK--HQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGL 582
            + S  +R+D     G  RD G K   Q  +R++H   QPN +  + ++D S  +  Y+ L
Sbjct: 423  EGSCHRRKDFRIGKGFPRDTGKKLTPQNGDRNLHHP-QPNGLHVSDRNDISGSIDAYNRL 481

Query: 581  LRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTF 402
            L  GR+TDC+ELL+ +ERKGLLDM+KVYH +FF  C+S+KAV EAF F KLI NPT+STF
Sbjct: 482  LSDGRVTDCVELLEDLERKGLLDMNKVYHAKFFNTCKSQKAVNEAFRFIKLISNPTMSTF 541

Query: 401  NMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVN 222
            NMLLSVCA+ QDS+G F+V + VKEAGLKADCKLYTTLISTCAK+GKVD MFEVFHEMVN
Sbjct: 542  NMLLSVCASCQDSDGAFQVLQFVKEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 601

Query: 221  TGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDR 42
             GVEPNVHTYGALIDGC RAGQVAKAFGAYGIMRSKKVKPDRV+FNALITACGQSGAVDR
Sbjct: 602  AGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKKVKPDRVVFNALITACGQSGAVDR 661

Query: 41   AFDVLAEMRAEAQ 3
            AFDVLAEMR E Q
Sbjct: 662  AFDVLAEMRTENQ 674



 Score = 68.6 bits (166), Expect = 1e-08
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 6/214 (2%)
 Frame = -2

Query: 632  ANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVK 453
            A  K+D   Y +  S   ++G++    E+   M   G+      Y       C     V 
Sbjct: 567  AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGA-LIDGCARAGQVA 625

Query: 452  EAFCFTKLIKN----PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTT-- 291
            +AF    ++++    P    FN L++ C  S   +  F+V   ++      D    T   
Sbjct: 626  KAFGAYGIMRSKKVKPDRVVFNALITACGQSGAVDRAFDVLAEMRTENQPIDPDHVTVGA 685

Query: 290  LISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKK 111
            LI TC + G+VD   EV+  +    ++     Y   ++ C + G +  A   Y  MR   
Sbjct: 686  LIKTCTQAGQVDRAREVYMMIHEYNIKGTPDVYTIAVNSCSQTGDLDFALNIYSDMRRNG 745

Query: 110  VKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            V PD +  +ALI   G +G +D AF ++ + + +
Sbjct: 746  VVPDEMFLSALIDVAGHAGKLDVAFQIIEDAKKQ 779



 Score = 63.2 bits (152), Expect = 5e-07
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 6/204 (2%)
 Frame = -2

Query: 605  YLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLI 426
            Y +   G  RAG++         M  K +   D+V       AC    AV  AF     +
Sbjct: 611  YGALIDGCARAGQVAKAFGAYGIMRSKKVKP-DRVVFNALITACGQSGAVDRAFDVLAEM 669

Query: 425  K------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
            +      +P   T   L+  C  +   +   EV  ++ E  +K    +YT  +++C++ G
Sbjct: 670  RTENQPIDPDHVTVGALIKTCTQAGQVDRAREVYMMIHEYNIKGTPDVYTIAVNSCSQTG 729

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFN 84
             +D    ++ +M   GV P+     ALID  G AG++  AF      + + ++   V ++
Sbjct: 730  DLDFALNIYSDMRRNGVVPDEMFLSALIDVAGHAGKLDVAFQIIEDAKKQGMQLGNVSYS 789

Query: 83   ALITACGQSGAVDRAFDVLAEMRA 12
            +L+ AC  +    +A ++   + A
Sbjct: 790  SLMGACSNAKNWQKAQELYENIMA 813


>emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score =  403 bits (1036), Expect = e-109
 Identities = 239/502 (47%), Positives = 310/502 (61%), Gaps = 18/502 (3%)
 Frame = -2

Query: 1454 GNLYKETTLEEMKHVFEDSENGHVVDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVLSS 1275
            G+L+KET+ +E +   +  E       +K+        L  E   +   S     +VLSS
Sbjct: 571  GDLHKETSEKESRATMDIVEEVSHASKDKEA-PWQEIALMQEETHVTNTSESSRLDVLSS 629

Query: 1274 FSNNGFAQTE-EDMGHILSPGMINEVDVLAPESFVIDMPDLLCRGGVEETE--------- 1125
             + N  +  E E+ G  + P +++E  +L P  F  +MP+L       ETE         
Sbjct: 630  NAKNCVSVRETEEAGPSILPPLLSESGLLQPLVFATEMPELQLEERQMETEFGYDLSTPV 689

Query: 1124 -----IRPKVHDVRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSK-YVREDIYS 963
                 I   V D+ +   + E  N+    GE        E ++ SF G+ +  +RE++Y+
Sbjct: 690  VQTKSIAASVPDIIALEGVNERKNRGGRPGE--------ESEIISFTGIFRDTIREELYT 741

Query: 962  FCEETQSGRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFK 783
            F E  QS  + +  F G   ++ +  L +   +S  +       AE S +N   + +Y +
Sbjct: 742  FYEAKQSVMKPMPNFNGIKTLASNASLLDGNGVSFQMRNATSKEAELSAQNSHSSADYVE 801

Query: 782  ERVPVAFYKDLSASKRRDSVKPGGVSRDRG--LKHQTANRDMHRSLQPNEIIANSKSDPS 609
             ++ ++ YK+ S+ KR D VK  G  RD+   L   + +R++ +    N +    K   S
Sbjct: 802  GKMSLSCYKEGSSGKRNDLVKGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDS 861

Query: 608  EYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKL 429
            E  S Y+ LL  GRL+DCI+LL+ ME+ GLLDMDKVYH +FFK CRS+KAV EAF F KL
Sbjct: 862  EKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKL 921

Query: 428  IKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTM 249
            I  PTLSTFNML+SVCATSQDS G F+V +LV+EAGLKADCKLYTTLISTCAK+GKVD M
Sbjct: 922  IPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAM 981

Query: 248  FEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITA 69
            FEVFHEMVN  VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKV+PDRV+FNALITA
Sbjct: 982  FEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITA 1041

Query: 68   CGQSGAVDRAFDVLAEMRAEAQ 3
            CGQSGAVDRAFDVLAEMRAE Q
Sbjct: 1042 CGQSGAVDRAFDVLAEMRAETQ 1063



 Score = 63.5 bits (153), Expect = 4e-07
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 5/220 (2%)
 Frame = -2

Query: 659  RSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGL-LDMDKVYHTRFF 483
            + ++P+ ++ N+       L T  G  ++G +    ++L  M  +   +D D +      
Sbjct: 1026 KKVEPDRVVFNA-------LITACG--QSGAVDRAFDVLAEMRAETQPIDPDHITVGALI 1076

Query: 482  KACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLV----KEAGLK 315
            KAC +   V  A    K+I    +     + ++  +S    G +E    V       G+ 
Sbjct: 1077 KACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVV 1136

Query: 314  ADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGA 135
             D    + LI      GK+D  FEV  E    G+   + +Y +L+  C  A    KA   
Sbjct: 1137 PDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALEL 1196

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  ++S K+ P     NALITA  +   +++A +VL++M+
Sbjct: 1197 YVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMK 1236



 Score = 63.2 bits (152), Expect = 5e-07
 Identities = 78/378 (20%), Positives = 149/378 (39%), Gaps = 7/378 (1%)
 Frame = -2

Query: 1124 IRPKVHDVRSKHALKEESNKIVEGGELSDEL-VVGEFQVSSFNGLSKYVREDIYSFCEET 948
            ++ K HD     A     N+++  G LSD + ++ + +      + K      +  C   
Sbjct: 854  VKEKYHDSEKFSAY----NRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKIC--- 906

Query: 947  QSGRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPV 768
            +S + +   F  A  I        N  +S   T Q   GA + L+ +  A      +   
Sbjct: 907  RSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGL----KADC 962

Query: 767  AFYKDLSASKRRDSVKPGGVSRDRGLKHQTANRDMHRSLQPNEIIANSKSDPSEYLSTYS 588
              Y  L ++      K G V     + H+  N ++    +PN            Y +   
Sbjct: 963  KLYTTLIST----CAKSGKVDAMFEVFHEMVNAEV----EPNV---------HTYGALID 1005

Query: 587  GLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIK----- 423
            G  RAG++         M  K + + D+V       AC    AV  AF     ++     
Sbjct: 1006 GCGRAGQVAKAFGAYGIMRSKKV-EPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQP 1064

Query: 422  -NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMF 246
             +P   T   L+  C  +   +   EV +++ +  +K   ++YT  +S+ ++ G  +  +
Sbjct: 1065 IDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAY 1124

Query: 245  EVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITAC 66
             V+ +M   GV P+     ALID  G AG++  AF      R + +    V +++L+ AC
Sbjct: 1125 SVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGAC 1184

Query: 65   GQSGAVDRAFDVLAEMRA 12
              +    +A ++  ++++
Sbjct: 1185 SNAKNWQKALELYVDIKS 1202


>ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic [Vitis vinifera]
          Length = 1115

 Score =  403 bits (1036), Expect = e-109
 Identities = 239/502 (47%), Positives = 310/502 (61%), Gaps = 18/502 (3%)
 Frame = -2

Query: 1454 GNLYKETTLEEMKHVFEDSENGHVVDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVLSS 1275
            G+L+KET+ +E +   +  E       +K+        L  E   +   S     +VLSS
Sbjct: 136  GDLHKETSEKESRATMDIVEEVSHASKDKEA-PWQEIALMQEETHVTNTSESSRLDVLSS 194

Query: 1274 FSNNGFAQTE-EDMGHILSPGMINEVDVLAPESFVIDMPDLLCRGGVEETE--------- 1125
             + N  +  E E+ G  + P +++E  +L P  F  +MP+L       ETE         
Sbjct: 195  NAKNCVSVRETEEAGPSILPPLLSESGLLQPLVFATEMPELQLEERQMETEFGYDLSTPV 254

Query: 1124 -----IRPKVHDVRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSK-YVREDIYS 963
                 I   V D+ +   + E  N+    GE        E ++ SF G+ +  +RE++Y+
Sbjct: 255  VQTKSIAASVPDIIALEGVNERKNRGGRPGE--------ESEIISFTGIFRDTIREELYT 306

Query: 962  FCEETQSGRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFK 783
            F E  QS  + +  F G   ++ +  L +   +S  +       AE S +N   + +Y +
Sbjct: 307  FYEAKQSVMKPMPNFNGIKTLASNASLLDGNGVSFQMRNATSKEAELSAQNSHSSADYVE 366

Query: 782  ERVPVAFYKDLSASKRRDSVKPGGVSRDRG--LKHQTANRDMHRSLQPNEIIANSKSDPS 609
             ++ ++ YK+ S+ KR D VK  G  RD+   L   + +R++ +    N +    K   S
Sbjct: 367  GKMSLSCYKEGSSGKRNDLVKGKGFPRDKNGRLPPLSDHRNLSQFPLSNGMTVKEKYHDS 426

Query: 608  EYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKL 429
            E  S Y+ LL  GRL+DCI+LL+ ME+ GLLDMDKVYH +FFK CRS+KAV EAF F KL
Sbjct: 427  EKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKICRSQKAVTEAFRFAKL 486

Query: 428  IKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTM 249
            I  PTLSTFNML+SVCATSQDS G F+V +LV+EAGLKADCKLYTTLISTCAK+GKVD M
Sbjct: 487  IPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAM 546

Query: 248  FEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITA 69
            FEVFHEMVN  VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKV+PDRV+FNALITA
Sbjct: 547  FEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITA 606

Query: 68   CGQSGAVDRAFDVLAEMRAEAQ 3
            CGQSGAVDRAFDVLAEMRAE Q
Sbjct: 607  CGQSGAVDRAFDVLAEMRAETQ 628



 Score = 63.5 bits (153), Expect = 4e-07
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 5/220 (2%)
 Frame = -2

Query: 659  RSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGL-LDMDKVYHTRFF 483
            + ++P+ ++ N+       L T  G  ++G +    ++L  M  +   +D D +      
Sbjct: 591  KKVEPDRVVFNA-------LITACG--QSGAVDRAFDVLAEMRAETQPIDPDHITVGALI 641

Query: 482  KACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLV----KEAGLK 315
            KAC +   V  A    K+I    +     + ++  +S    G +E    V       G+ 
Sbjct: 642  KACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVV 701

Query: 314  ADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGA 135
             D    + LI      GK+D  FEV  E    G+   + +Y +L+  C  A    KA   
Sbjct: 702  PDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALEL 761

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  ++S K+ P     NALITA  +   +++A +VL++M+
Sbjct: 762  YVDIKSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMK 801



 Score = 63.2 bits (152), Expect = 5e-07
 Identities = 78/378 (20%), Positives = 149/378 (39%), Gaps = 7/378 (1%)
 Frame = -2

Query: 1124 IRPKVHDVRSKHALKEESNKIVEGGELSDEL-VVGEFQVSSFNGLSKYVREDIYSFCEET 948
            ++ K HD     A     N+++  G LSD + ++ + +      + K      +  C   
Sbjct: 419  VKEKYHDSEKFSAY----NRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKIC--- 471

Query: 947  QSGRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPV 768
            +S + +   F  A  I        N  +S   T Q   GA + L+ +  A      +   
Sbjct: 472  RSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGL----KADC 527

Query: 767  AFYKDLSASKRRDSVKPGGVSRDRGLKHQTANRDMHRSLQPNEIIANSKSDPSEYLSTYS 588
              Y  L ++      K G V     + H+  N ++    +PN            Y +   
Sbjct: 528  KLYTTLIST----CAKSGKVDAMFEVFHEMVNAEV----EPNV---------HTYGALID 570

Query: 587  GLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIK----- 423
            G  RAG++         M  K + + D+V       AC    AV  AF     ++     
Sbjct: 571  GCGRAGQVAKAFGAYGIMRSKKV-EPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQP 629

Query: 422  -NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMF 246
             +P   T   L+  C  +   +   EV +++ +  +K   ++YT  +S+ ++ G  +  +
Sbjct: 630  IDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAY 689

Query: 245  EVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITAC 66
             V+ +M   GV P+     ALID  G AG++  AF      R + +    V +++L+ AC
Sbjct: 690  SVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGAC 749

Query: 65   GQSGAVDRAFDVLAEMRA 12
              +    +A ++  ++++
Sbjct: 750  SNAKNWQKALELYVDIKS 767


>ref|XP_010255161.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X2 [Nelumbo nucifera]
          Length = 1133

 Score =  402 bits (1033), Expect = e-109
 Identities = 245/493 (49%), Positives = 310/493 (62%), Gaps = 15/493 (3%)
 Frame = -2

Query: 1436 TTLEEMKHVFED-SENGHV-VDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVLSSFSNN 1263
            T  EE+K +FE+ SE GH  ++ E  L +   + L  E     + S   +   + S  ++
Sbjct: 189  TPAEELKAIFEETSEKGHNNLEKEVQLSQFKKTALMFEESPFTEASE--LSYSVCSTKSS 246

Query: 1262 GFAQTEEDMGHILSPGMINEVDVLAPESFVIDMPDLLCRGGVEE----TEIRPKVHDVRS 1095
               +  E M   LS  ++ E        F  DMP+L+ +G  EE    +E+   + D +S
Sbjct: 247  ILTKETESMDPTLSSPVLGESASGEKVRFAKDMPELVLKGYQEEAVPWSELSGLLVDPKS 306

Query: 1094 ------KHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSK-YVREDIYSFCEETQSGR 936
                  KH   E S +     EL DE   GE QVS++NG  +   RE+I++F EE QSG 
Sbjct: 307  SSVIHLKHVPAEVSQEHQFKNELDDE---GEVQVSTYNGFFRPSFREEIHTFYEENQSGV 363

Query: 935  RILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAFYK 756
            R                               L+GAE S + L + T+Y + ++P++ YK
Sbjct: 364  RT----------------------------NMLSGAEVS-EGLHNTTDYHERKMPLSCYK 394

Query: 755  DLSASKRRDSVKPGGVSRDRGLK--HQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGL 582
            + S  +R+D     G  RD G K   Q  +R++H   QPN +  + ++D S  +  Y+ L
Sbjct: 395  EGSCHRRKDFRIGKGFPRDTGKKLTPQNGDRNLHHP-QPNGLHVSDRNDISGSIDAYNRL 453

Query: 581  LRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTF 402
            L  GR+TDC+ELL+ +ERKGLLDM+KVYH +FF  C+S+KAV EAF F KLI NPT+STF
Sbjct: 454  LSDGRVTDCVELLEDLERKGLLDMNKVYHAKFFNTCKSQKAVNEAFRFIKLISNPTMSTF 513

Query: 401  NMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVN 222
            NMLLSVCA+ QDS+G F+V + VKEAGLKADCKLYTTLISTCAK+GKVD MFEVFHEMVN
Sbjct: 514  NMLLSVCASCQDSDGAFQVLQFVKEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 573

Query: 221  TGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDR 42
             GVEPNVHTYGALIDGC RAGQVAKAFGAYGIMRSKKVKPDRV+FNALITACGQSGAVDR
Sbjct: 574  AGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKKVKPDRVVFNALITACGQSGAVDR 633

Query: 41   AFDVLAEMRAEAQ 3
            AFDVLAEMR E Q
Sbjct: 634  AFDVLAEMRTENQ 646



 Score = 68.6 bits (166), Expect = 1e-08
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 6/214 (2%)
 Frame = -2

Query: 632  ANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVK 453
            A  K+D   Y +  S   ++G++    E+   M   G+      Y       C     V 
Sbjct: 539  AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGA-LIDGCARAGQVA 597

Query: 452  EAFCFTKLIKN----PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTT-- 291
            +AF    ++++    P    FN L++ C  S   +  F+V   ++      D    T   
Sbjct: 598  KAFGAYGIMRSKKVKPDRVVFNALITACGQSGAVDRAFDVLAEMRTENQPIDPDHVTVGA 657

Query: 290  LISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKK 111
            LI TC + G+VD   EV+  +    ++     Y   ++ C + G +  A   Y  MR   
Sbjct: 658  LIKTCTQAGQVDRAREVYMMIHEYNIKGTPDVYTIAVNSCSQTGDLDFALNIYSDMRRNG 717

Query: 110  VKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            V PD +  +ALI   G +G +D AF ++ + + +
Sbjct: 718  VVPDEMFLSALIDVAGHAGKLDVAFQIIEDAKKQ 751



 Score = 63.2 bits (152), Expect = 5e-07
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 6/204 (2%)
 Frame = -2

Query: 605  YLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLI 426
            Y +   G  RAG++         M  K +   D+V       AC    AV  AF     +
Sbjct: 583  YGALIDGCARAGQVAKAFGAYGIMRSKKVKP-DRVVFNALITACGQSGAVDRAFDVLAEM 641

Query: 425  K------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
            +      +P   T   L+  C  +   +   EV  ++ E  +K    +YT  +++C++ G
Sbjct: 642  RTENQPIDPDHVTVGALIKTCTQAGQVDRAREVYMMIHEYNIKGTPDVYTIAVNSCSQTG 701

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFN 84
             +D    ++ +M   GV P+     ALID  G AG++  AF      + + ++   V ++
Sbjct: 702  DLDFALNIYSDMRRNGVVPDEMFLSALIDVAGHAGKLDVAFQIIEDAKKQGMQLGNVSYS 761

Query: 83   ALITACGQSGAVDRAFDVLAEMRA 12
            +L+ AC  +    +A ++   + A
Sbjct: 762  SLMGACSNAKNWQKAQELYENIMA 785


>ref|XP_007041957.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
            cacao] gi|508705892|gb|EOX97788.1| Pentatricopeptide
            repeat-containing protein, putative [Theobroma cacao]
          Length = 1110

 Score =  391 bits (1005), Expect = e-106
 Identities = 233/495 (47%), Positives = 315/495 (63%), Gaps = 9/495 (1%)
 Frame = -2

Query: 1460 DPGNLYKETTLEEMKHVFEDSENGHVVDVEKD-LLKCHSSDLNCEGDMIDKLSRGPVKEV 1284
            D G+L KE   +    + E+ +        K+ LL+   + +  +  ++ K S     + 
Sbjct: 138  DIGDLKKENFAKGKDDLKEEIKEATYASESKEALLQFQETTVANDDSLLHKTSDSSGADC 197

Query: 1283 LSSFSNNGFAQTEEDMGHILS--PGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKV 1110
            L+  + NGF  +EE     L   P ++ E   + P  F  +M +L     +EE E   + 
Sbjct: 198  LA-VTANGFDVSEESGATDLPLPPTVLLESGAVEPLMFAAEMSEL----HLEEVERVNEF 252

Query: 1109 HDVRSKHALKEESNK---IVEGGELSDELVVGEFQVSSFNGLSKY-VREDIYSFCEETQS 942
                 + A++ ES+    +V+   +    +VGE +V+    + K  VRE++++F E  Q 
Sbjct: 253  EADLPRLAVEPESSASSVLVKDAHV----LVGEGEVTRHYDIFKESVREELHTFYEADQL 308

Query: 941  GRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAF 762
              +  +   G    S       + S S L+   +L  A+ S KN L   +  + +V  A 
Sbjct: 309  VAKSSTNLNGLKPASSRVFSPNSNSFSSLMQNSELKRAQLSSKNCLQTADMAEGKVAQAC 368

Query: 761  YKDLSASKRRDSVKPGGVSRDRGLKH--QTANRDMHRSLQPNEIIANSKSDPSEYLSTYS 588
               +S+ KR+D  +   + RD+G +H  Q  N  + +   PN ++A++K  P ++  +Y+
Sbjct: 369  SNRVSSHKRQDFGRGREIPRDKGKRHSIQEKNTKLPKFPFPNGMLADNKHRPEDHFRSYN 428

Query: 587  GLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLS 408
             LLR GRL+DC++LL+ ME++GLLDM+KVYH +FFK C  +KAVKEAFCFTKLI NPTLS
Sbjct: 429  RLLRDGRLSDCVDLLEDMEQRGLLDMNKVYHAKFFKICNRQKAVKEAFCFTKLIPNPTLS 488

Query: 407  TFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEM 228
            TFNML+SVCA+SQDS+G FEV R+V+EAG KADCKLYTTLISTCAK+GKVDTMFEVFHEM
Sbjct: 489  TFNMLMSVCASSQDSDGAFEVLRIVQEAGFKADCKLYTTLISTCAKSGKVDTMFEVFHEM 548

Query: 227  VNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAV 48
            VN+GVEPNV+TYGALIDGC RAGQVAKAFGAYGIMRSK VKPDRV+FNALITACGQSGAV
Sbjct: 549  VNSGVEPNVNTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 608

Query: 47   DRAFDVLAEMRAEAQ 3
            DRAFDVLAEM AE Q
Sbjct: 609  DRAFDVLAEMMAETQ 623



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 44/260 (16%)
 Frame = -2

Query: 662  HRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTD----CIELLQSMERKGLLDMDKVYH 495
            +R     E    +K  P+  LST++ L+     +       E+L+ ++  G     K+Y 
Sbjct: 467  NRQKAVKEAFCFTKLIPNPTLSTFNMLMSVCASSQDSDGAFEVLRIVQEAGFKADCKLYT 526

Query: 494  TRFFKACRSKKAVKEAFCFTKLIKN---PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEA 324
            T      +S K       F +++ +   P ++T+  L+  CA +      F    +++  
Sbjct: 527  TLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDGCARAGQVAKAFGAYGIMRSK 586

Query: 323  GLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVEPNVHTYGALIDGCGRAGQVA 150
             +K D  ++  LI+ C ++G VD  F+V  EM+     ++P+  T GALI  C  A QV 
Sbjct: 587  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPIDPDHVTVGALIKACSNADQVD 646

Query: 149  K-----------------------------------AFGAYGIMRSKKVKPDRVIFNALI 75
            +                                   A   Y  M+ K V PD V  +ALI
Sbjct: 647  RAREVYKMIHEFSIKGTPEVYTIAVNCCSQTGDWEFACSVYSDMKGKGVAPDEVFISALI 706

Query: 74   TACGQSGAVDRAFDVLAEMR 15
               G +G +D AF++L E +
Sbjct: 707  DVAGHAGKLDAAFEILEEAK 726



 Score = 65.9 bits (159), Expect = 8e-08
 Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
 Frame = -2

Query: 635  IANSKSDPSEYLSTYSGLL----RAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRS 468
            + NS  +P+  ++TY  L+    RAG++         M  K +   D+V       AC  
Sbjct: 548  MVNSGVEPN--VNTYGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQ 604

Query: 467  KKAVKEAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADC 306
              AV  AF     +       +P   T   L+  C+ +   +   EV +++ E  +K   
Sbjct: 605  SGAVDRAFDVLAEMMAETQPIDPDHVTVGALIKACSNADQVDRAREVYKMIHEFSIKGTP 664

Query: 305  KLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGI 126
            ++YT  ++ C++ G  +    V+ +M   GV P+     ALID  G AG++  AF     
Sbjct: 665  EVYTIAVNCCSQTGDWEFACSVYSDMKGKGVAPDEVFISALIDVAGHAGKLDAAFEILEE 724

Query: 125  MRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
             +++ +    V +++L+ AC  +    +A ++   ++A
Sbjct: 725  AKNQGINVGIVSYSSLMGACSNARNWQKALELYENIKA 762



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
 Frame = -2

Query: 548  LLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKN----PTLSTFNMLLSVC 381
            L + M     +D D V      KAC +   V  A    K+I       T   + + ++ C
Sbjct: 615  LAEMMAETQPIDPDHVTVGALIKACSNADQVDRAREVYKMIHEFSIKGTPEVYTIAVNCC 674

Query: 380  ATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNV 201
            + + D E    V   +K  G+  D    + LI      GK+D  FE+  E  N G+   +
Sbjct: 675  SQTGDWEFACSVYSDMKGKGVAPDEVFISALIDVAGHAGKLDAAFEILEEAKNQGINVGI 734

Query: 200  HTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAE 21
             +Y +L+  C  A    KA   Y  +++ K+       NALIT+  ++  + +A ++L+E
Sbjct: 735  VSYSSLMGACSNARNWQKALELYENIKAVKLNLTVSTVNALITSLCEADQLPKAMEILSE 794

Query: 20   M 18
            M
Sbjct: 795  M 795


>ref|XP_002306163.2| hypothetical protein POPTR_0004s17400g [Populus trichocarpa]
            gi|550341229|gb|EEE86674.2| hypothetical protein
            POPTR_0004s17400g [Populus trichocarpa]
          Length = 1104

 Score =  377 bits (968), Expect = e-101
 Identities = 217/411 (52%), Positives = 269/411 (65%), Gaps = 5/411 (1%)
 Frame = -2

Query: 1220 PGMINEVDVLAPESFVIDMPDLLCRGGVEE----TEIRPKVHDVRSKHALKEESNKIVEG 1053
            P +++E     P  F   M +L      EE    +E+   V  V+S   L    N+ +E 
Sbjct: 223  PSVLSESGSALPLIFATQMTELTQEKSGEEIEFGSELSGSVEKVKSNAVLVPVDNESIEK 282

Query: 1052 GELSDELVVGEFQVSSFNG-LSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQE 876
             ELS           S+NG +S+ VRED+Y+F    +S  +  S   G    S H  L +
Sbjct: 283  AELS-----------SYNGAISQSVREDLYTFYGANRSVVKSASNL-GLKETSSHASLLK 330

Query: 875  NASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAFYKDLSASKRRDSVKPGGVSRDR 696
            +   S L     L   + S +  L A ++ ++ +P A Y+  S  K ++   PG  S++R
Sbjct: 331  SKRFSSLKMNTGLETEDLSSQQPLQAADHVQKTMPPAHYEGGSFHKSKNL--PG--SKER 386

Query: 695  GLKHQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLL 516
                Q ++  + +   PN I +  K  P E  + Y+ LLR GRL +C++LL+ MER+GLL
Sbjct: 387  KHPIQDSHSKLRQLPSPNGIPSKVKDHPPEEYNAYNRLLREGRLAECLDLLEDMERRGLL 446

Query: 515  DMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRL 336
            DM+KVYH +FFK CRS+KAVKEAF F KL++NPTLSTFNML+SVCATSQ+S G FEV +L
Sbjct: 447  DMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAGAFEVLQL 506

Query: 335  VKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQ 156
             K  GLKADCKLYTTLISTCAK+GKVD MFEVFHEMVN GVEPNVHTYGALIDGC RAGQ
Sbjct: 507  AKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALIDGCARAGQ 566

Query: 155  VAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAEAQ 3
            VAKAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM  EAQ
Sbjct: 567  VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQ 617



 Score = 70.5 bits (171), Expect = 3e-09
 Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 41/239 (17%)
 Frame = -2

Query: 605  YLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLI 426
            Y +   G  RAG++         M  K +   D+V       AC    AV  AF     +
Sbjct: 554  YGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEM 612

Query: 425  K------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
                   +P   T   L+  C  +   +   EV  +V +  +K   ++YT  I++C++ G
Sbjct: 613  TGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIG 672

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAG---------QVAKAFGA-------- 135
              +   +V+ +M   GV P+     ALID  G AG         QVAKA GA        
Sbjct: 673  DWEFACKVYDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQVAKAKGAQLGIIPYS 732

Query: 134  ------------------YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
                              Y  ++S K+KP     NALITA      + +A +VL+EM+A
Sbjct: 733  SLMGACCNAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKA 791


>ref|XP_011037246.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X2 [Populus euphratica]
          Length = 1104

 Score =  372 bits (955), Expect = e-100
 Identities = 227/493 (46%), Positives = 302/493 (61%), Gaps = 9/493 (1%)
 Frame = -2

Query: 1454 GNLYKET-TLEEMKHVFEDSENGHVVDVEKDLLKCH-SSDLNCEGDMIDKLSRGPVKEVL 1281
            G L++E   +E    V + SEN H ++ ++  ++   ++ L+    +I  +       V 
Sbjct: 141  GGLHREAHEVESQGSVKKASENSHEIEEKETHVQFQETASLHGSSLLIKAVESSGANFVA 200

Query: 1280 SSFSNNGFAQTEEDMGHILSP--GMINEVDVLAPESFVIDMPDLLCRGGVEE----TEIR 1119
            ++  +    +  E     +SP   + +E     P  F   M +L      EE    +E+ 
Sbjct: 201  ANVCDTVVVEESEVGDARVSPLPSVHSESGSALPLIFATQMTELTREKSGEEIEFGSELS 260

Query: 1118 PKVHDVRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNG-LSKYVREDIYSFCEETQS 942
              V  V+S   L    N+ ++  ELS+           +NG +S+ VRED+Y+F    +S
Sbjct: 261  ESVEKVKSNAVLVPVDNESIDKAELSN-----------YNGAISQSVREDLYTFYGANRS 309

Query: 941  GRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAF 762
              +  S   G    S H  L ++   S L     L   + S +  L A ++ ++ +P+A 
Sbjct: 310  VVKSASNL-GLKETSSHASLLKSKRFSSLKMNTGLETEDLSSQQPLQAADHVQKIMPLAH 368

Query: 761  YKDLSASKRRDSVKPGGVSRDRGLKHQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGL 582
             +  S  K ++  +    SR+R    Q ++  + +   PN I +  K  PSE  + Y+ L
Sbjct: 369  NEGGSFHKSKNLPR----SRERKHPIQDSHSKLRQLPSPNGIPSKVKDHPSEDYNAYNRL 424

Query: 581  LRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTF 402
            LR GRL +C++LL+ MER+GLLDM+KVYH +FFK CRS+KAVKEAF F KL++NPTLSTF
Sbjct: 425  LREGRLAECLDLLEDMERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTF 484

Query: 401  NMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVN 222
            NML+SVCA+SQ+S G FEV +L K  GLKADCKLYTTLISTCAK+GKVD MFEVFHEMVN
Sbjct: 485  NMLMSVCASSQNSAGAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 544

Query: 221  TGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDR 42
             GVEPNVHTYGALIDGC RAGQVAKAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDR
Sbjct: 545  AGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 604

Query: 41   AFDVLAEMRAEAQ 3
            AFDVLAEM  EAQ
Sbjct: 605  AFDVLAEMTGEAQ 617



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 5/210 (2%)
 Frame = -2

Query: 629  NSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGL-LDMDKVYHTRFFKACRSKKAVK 453
            N K D   + +  +   ++G +    ++L  M  +   +D D +      KAC +   V 
Sbjct: 581  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVD 640

Query: 452  EAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE----AGLKADCKLYTTLI 285
             A     ++    +     + ++   S    G +E    V +     G+  D    + LI
Sbjct: 641  RAQEVYNMVHKYNIKGTPEVYTIAINSSSQIGDWEFACKVYDDMTRKGVVPDEMFLSALI 700

Query: 284  STCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVK 105
                  GK+D  FE+  E    G +  +  Y +L+  C  A    K    Y  ++S K+K
Sbjct: 701  DVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACCNAKNWQKGLELYEDIKSMKLK 760

Query: 104  PDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            P     NALITA      + +A +VL+EM+
Sbjct: 761  PTVATLNALITALCDGDQLSKALEVLSEMK 790


>ref|XP_011037244.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X1 [Populus euphratica]
          Length = 1109

 Score =  372 bits (955), Expect = e-100
 Identities = 227/493 (46%), Positives = 302/493 (61%), Gaps = 9/493 (1%)
 Frame = -2

Query: 1454 GNLYKET-TLEEMKHVFEDSENGHVVDVEKDLLKCH-SSDLNCEGDMIDKLSRGPVKEVL 1281
            G L++E   +E    V + SEN H ++ ++  ++   ++ L+    +I  +       V 
Sbjct: 141  GGLHREAHEVESQGSVKKASENSHEIEEKETHVQFQETASLHGSSLLIKAVESSGANFVA 200

Query: 1280 SSFSNNGFAQTEEDMGHILSP--GMINEVDVLAPESFVIDMPDLLCRGGVEE----TEIR 1119
            ++  +    +  E     +SP   + +E     P  F   M +L      EE    +E+ 
Sbjct: 201  ANVCDTVVVEESEVGDARVSPLPSVHSESGSALPLIFATQMTELTREKSGEEIEFGSELS 260

Query: 1118 PKVHDVRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNG-LSKYVREDIYSFCEETQS 942
              V  V+S   L    N+ ++  ELS+           +NG +S+ VRED+Y+F    +S
Sbjct: 261  ESVEKVKSNAVLVPVDNESIDKAELSN-----------YNGAISQSVREDLYTFYGANRS 309

Query: 941  GRRILSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAF 762
              +  S   G    S H  L ++   S L     L   + S +  L A ++ ++ +P+A 
Sbjct: 310  VVKSASNL-GLKETSSHASLLKSKRFSSLKMNTGLETEDLSSQQPLQAADHVQKIMPLAH 368

Query: 761  YKDLSASKRRDSVKPGGVSRDRGLKHQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGL 582
             +  S  K ++  +    SR+R    Q ++  + +   PN I +  K  PSE  + Y+ L
Sbjct: 369  NEGGSFHKSKNLPR----SRERKHPIQDSHSKLRQLPSPNGIPSKVKDHPSEDYNAYNRL 424

Query: 581  LRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTF 402
            LR GRL +C++LL+ MER+GLLDM+KVYH +FFK CRS+KAVKEAF F KL++NPTLSTF
Sbjct: 425  LREGRLAECLDLLEDMERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTF 484

Query: 401  NMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVN 222
            NML+SVCA+SQ+S G FEV +L K  GLKADCKLYTTLISTCAK+GKVD MFEVFHEMVN
Sbjct: 485  NMLMSVCASSQNSAGAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 544

Query: 221  TGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDR 42
             GVEPNVHTYGALIDGC RAGQVAKAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDR
Sbjct: 545  AGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 604

Query: 41   AFDVLAEMRAEAQ 3
            AFDVLAEM  EAQ
Sbjct: 605  AFDVLAEMTGEAQ 617



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 5/210 (2%)
 Frame = -2

Query: 629  NSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGL-LDMDKVYHTRFFKACRSKKAVK 453
            N K D   + +  +   ++G +    ++L  M  +   +D D +      KAC +   V 
Sbjct: 581  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVD 640

Query: 452  EAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE----AGLKADCKLYTTLI 285
             A     ++    +     + ++   S    G +E    V +     G+  D    + LI
Sbjct: 641  RAQEVYNMVHKYNIKGTPEVYTIAINSSSQIGDWEFACKVYDDMTRKGVVPDEMFLSALI 700

Query: 284  STCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVK 105
                  GK+D  FE+  E    G +  +  Y +L+  C  A    K    Y  ++S K+K
Sbjct: 701  DVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACCNAKNWQKGLELYEDIKSMKLK 760

Query: 104  PDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            P     NALITA      + +A +VL+EM+
Sbjct: 761  PTVATLNALITALCDGDQLSKALEVLSEMK 790


>ref|XP_006494588.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 923

 Score =  369 bits (946), Expect = 4e-99
 Identities = 209/406 (51%), Positives = 265/406 (65%), Gaps = 2/406 (0%)
 Frame = -2

Query: 1220 PGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKVHDVRSKHALKEESNKIVEGGELS 1041
            P M+++   + P SF  +M +L    G E+ +I      V    A  E S   V  G L+
Sbjct: 199  PFMLSDSGGVQPHSFATEMSELQL--GKEKKDIESCESSVLENDAHAEVSVPTVSYGVLT 256

Query: 1040 DELVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASIS 861
            +                  VRE+ ++    +QS  +  +  E   AIS H       S+S
Sbjct: 257  ES-----------------VREEQFACGRASQSVLKSPANLEFVKAISSHASPLNGYSLS 299

Query: 860  PLLTPQKLNGAEESLKNLLHATEYFKERVPVAFYKDLSASK--RRDSVKPGGVSRDRGLK 687
             L    +  G E SL+  L   E+ + ++ +A +++  + K   R  ++    + +R   
Sbjct: 300  SLKRDTEPKGPELSLQEALQTAEHVEGKIRLACHREGPSHKIKARRRIRNFPRNNERINL 359

Query: 686  HQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMD 507
             Q   ++M +   PN   AN   D SE L +Y+ L+R GR++DCI+LL+ MERKGLLDMD
Sbjct: 360  MQDVGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISDCIDLLEDMERKGLLDMD 419

Query: 506  KVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE 327
            KVYH RFF  C+S+KA+KEAF F KL+ NPTLSTFNML+SVCA+S+DSEG F+V RLV+E
Sbjct: 420  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 479

Query: 326  AGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAK 147
            AGLKADCKLYTTLI+TCAK+GKVD MFEVFHEMVN G+EPNVHTYGALIDGC +AGQVAK
Sbjct: 480  AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 539

Query: 146  AFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            AFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM AE
Sbjct: 540  AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 585



 Score = 68.2 bits (165), Expect = 2e-08
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 5/211 (2%)
 Frame = -2

Query: 629  NSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERK-GLLDMDKVYHTRFFKACRSKKAVK 453
            N K D   + +  +   ++G +    ++L  M  +   +D D +      KAC +   V 
Sbjct: 551  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 610

Query: 452  EAFCFTKLIKN----PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLI 285
             A    K+I       T   + + ++ C+ + D E    V   + + G+  D    + LI
Sbjct: 611  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 670

Query: 284  STCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVK 105
                  GKV+  FE+  E  N G+   + +Y +L+  C  A    KA   Y  M+S K+K
Sbjct: 671  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 730

Query: 104  PDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
            P     NALITA      + +  +VL++M++
Sbjct: 731  PTVSTMNALITALCDGDRLPKTMEVLSDMKS 761


>ref|XP_006494587.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic-like isoform X1 [Citrus sinensis]
          Length = 1072

 Score =  369 bits (946), Expect = 4e-99
 Identities = 209/406 (51%), Positives = 265/406 (65%), Gaps = 2/406 (0%)
 Frame = -2

Query: 1220 PGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKVHDVRSKHALKEESNKIVEGGELS 1041
            P M+++   + P SF  +M +L    G E+ +I      V    A  E S   V  G L+
Sbjct: 199  PFMLSDSGGVQPHSFATEMSELQL--GKEKKDIESCESSVLENDAHAEVSVPTVSYGVLT 256

Query: 1040 DELVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASIS 861
            +                  VRE+ ++    +QS  +  +  E   AIS H       S+S
Sbjct: 257  ES-----------------VREEQFACGRASQSVLKSPANLEFVKAISSHASPLNGYSLS 299

Query: 860  PLLTPQKLNGAEESLKNLLHATEYFKERVPVAFYKDLSASK--RRDSVKPGGVSRDRGLK 687
             L    +  G E SL+  L   E+ + ++ +A +++  + K   R  ++    + +R   
Sbjct: 300  SLKRDTEPKGPELSLQEALQTAEHVEGKIRLACHREGPSHKIKARRRIRNFPRNNERINL 359

Query: 686  HQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMD 507
             Q   ++M +   PN   AN   D SE L +Y+ L+R GR++DCI+LL+ MERKGLLDMD
Sbjct: 360  MQDVGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISDCIDLLEDMERKGLLDMD 419

Query: 506  KVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE 327
            KVYH RFF  C+S+KA+KEAF F KL+ NPTLSTFNML+SVCA+S+DSEG F+V RLV+E
Sbjct: 420  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 479

Query: 326  AGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAK 147
            AGLKADCKLYTTLI+TCAK+GKVD MFEVFHEMVN G+EPNVHTYGALIDGC +AGQVAK
Sbjct: 480  AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 539

Query: 146  AFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            AFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM AE
Sbjct: 540  AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 585



 Score = 68.2 bits (165), Expect = 2e-08
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 5/211 (2%)
 Frame = -2

Query: 629  NSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERK-GLLDMDKVYHTRFFKACRSKKAVK 453
            N K D   + +  +   ++G +    ++L  M  +   +D D +      KAC +   V 
Sbjct: 551  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 610

Query: 452  EAFCFTKLIKN----PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLI 285
             A    K+I       T   + + ++ C+ + D E    V   + + G+  D    + LI
Sbjct: 611  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 670

Query: 284  STCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVK 105
                  GKV+  FE+  E  N G+   + +Y +L+  C  A    KA   Y  M+S K+K
Sbjct: 671  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 730

Query: 104  PDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
            P     NALITA      + +  +VL++M++
Sbjct: 731  PTVSTMNALITALCDGDRLPKTMEVLSDMKS 761


>gb|KHF99163.1| Pentatricopeptide repeat-containing protein [Gossypium arboreum]
          Length = 1178

 Score =  363 bits (932), Expect = 2e-97
 Identities = 200/348 (57%), Positives = 247/348 (70%), Gaps = 4/348 (1%)
 Frame = -2

Query: 1034 LVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASISPL 855
            ++VGE +V +++ + +  RE++++F E      +  S       +S H     +   S L
Sbjct: 318  VLVGEDKVRNYDIVRESGREELHTFYEADHLVAKSSSNLT-LRPVSSHVLSSNSNKFSSL 376

Query: 854  -LTPQ-KLNGAEESLKNLLHATEYFKERVPVAFYKDLSASKRRDSVKPGGVSRDRGLKHQ 681
             L P  +LN    S KN L   +  + +V  A ++   + KR+D  +     RD+G KH 
Sbjct: 377  KLKPNSELNKDALSAKNSLQTADMVEGKVTQANFQGGFSHKRKDVGRGMESPRDKGKKHL 436

Query: 680  TANRD--MHRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMD 507
               +D  + +   PN  +AN    P EYLS Y+ LLR GRL++C++LL+ ME+KGLLDMD
Sbjct: 437  IQEKDTKLAQFPFPNGELANDNLHPEEYLSYYNCLLRCGRLSECVDLLEDMEQKGLLDMD 496

Query: 506  KVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE 327
            KVYH +FFK C  +KAVKEAF FTKLI NPTLSTFNML+SVC  S+DSEG F+V RLV+E
Sbjct: 497  KVYHAKFFKICSKQKAVKEAFRFTKLIANPTLSTFNMLMSVCGCSKDSEGAFQVLRLVQE 556

Query: 326  AGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAK 147
            AG +ADC LYTTLISTCAK+GKVDTMFEVFHEMVN+GVEPNV+TYGALIDGC RAGQV K
Sbjct: 557  AGFQADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDGCARAGQVPK 616

Query: 146  AFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAEAQ 3
            AFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM AE Q
Sbjct: 617  AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQ 664



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
 Frame = -2

Query: 551  ELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKLIKN---PTLSTFNMLLSV 384
            ++L+ ++  G    D + +T     C     V   F  F +++ +   P ++T+  L+  
Sbjct: 549  QVLRLVQEAGF-QADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDG 607

Query: 383  CATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVE 210
            CA +      F    +++   +K D  ++  LI+ C ++G VD  F+V  EM+     ++
Sbjct: 608  CARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPID 667

Query: 209  PNVHTYGALIDGCGRAGQVAKA-----------------------------------FGA 135
            P+  T GALI  C  AGQV +A                                    G 
Sbjct: 668  PDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCCSQTGDWEFACGV 727

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  M+ K + PD V  +ALI   G +G +D AF++L E +
Sbjct: 728  YNDMKKKGIAPDEVFISALIDVAGHAGKLDAAFELLQEAK 767



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 10/213 (4%)
 Frame = -2

Query: 635  IANSKSDPSEYLSTYSGLL----RAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRS 468
            + NS  +P+  ++TY  L+    RAG++         M  K +   D+V       AC  
Sbjct: 589  MVNSGVEPN--VNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKP-DRVVFNALITACGQ 645

Query: 467  KKAVKEAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADC 306
              AV  AF     +       +P   T   L+  C+ +   E   EV +++ +  ++   
Sbjct: 646  SGAVDRAFDVLAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTP 705

Query: 305  KLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGI 126
            ++YT  ++ C++ G  +    V+++M   G+ P+     ALID  G AG++  AF     
Sbjct: 706  EVYTIAVNCCSQTGDWEFACGVYNDMKKKGIAPDEVFISALIDVAGHAGKLDAAFELLQE 765

Query: 125  MRSKKVKPDRVIFNALITACGQSGAVDRAFDVL 27
             ++  +    V +++L+ AC  +    +A +++
Sbjct: 766  AKNHGINSGIVSYSSLMGACSNARNWQKALELM 798


>gb|KHF99162.1| Pentatricopeptide repeat-containing protein, chloroplastic [Gossypium
            arboreum]
          Length = 1189

 Score =  363 bits (932), Expect = 2e-97
 Identities = 200/348 (57%), Positives = 247/348 (70%), Gaps = 4/348 (1%)
 Frame = -2

Query: 1034 LVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASISPL 855
            ++VGE +V +++ + +  RE++++F E      +  S       +S H     +   S L
Sbjct: 318  VLVGEDKVRNYDIVRESGREELHTFYEADHLVAKSSSNLT-LRPVSSHVLSSNSNKFSSL 376

Query: 854  -LTPQ-KLNGAEESLKNLLHATEYFKERVPVAFYKDLSASKRRDSVKPGGVSRDRGLKHQ 681
             L P  +LN    S KN L   +  + +V  A ++   + KR+D  +     RD+G KH 
Sbjct: 377  KLKPNSELNKDALSAKNSLQTADMVEGKVTQANFQGGFSHKRKDVGRGMESPRDKGKKHL 436

Query: 680  TANRD--MHRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMD 507
               +D  + +   PN  +AN    P EYLS Y+ LLR GRL++C++LL+ ME+KGLLDMD
Sbjct: 437  IQEKDTKLAQFPFPNGELANDNLHPEEYLSYYNCLLRCGRLSECVDLLEDMEQKGLLDMD 496

Query: 506  KVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE 327
            KVYH +FFK C  +KAVKEAF FTKLI NPTLSTFNML+SVC  S+DSEG F+V RLV+E
Sbjct: 497  KVYHAKFFKICSKQKAVKEAFRFTKLIANPTLSTFNMLMSVCGCSKDSEGAFQVLRLVQE 556

Query: 326  AGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAK 147
            AG +ADC LYTTLISTCAK+GKVDTMFEVFHEMVN+GVEPNV+TYGALIDGC RAGQV K
Sbjct: 557  AGFQADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDGCARAGQVPK 616

Query: 146  AFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAEAQ 3
            AFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM AE Q
Sbjct: 617  AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQ 664



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
 Frame = -2

Query: 551  ELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKLIKN---PTLSTFNMLLSV 384
            ++L+ ++  G    D + +T     C     V   F  F +++ +   P ++T+  L+  
Sbjct: 549  QVLRLVQEAGF-QADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDG 607

Query: 383  CATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVE 210
            CA +      F    +++   +K D  ++  LI+ C ++G VD  F+V  EM+     ++
Sbjct: 608  CARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPID 667

Query: 209  PNVHTYGALIDGCGRAGQVAKA-----------------------------------FGA 135
            P+  T GALI  C  AGQV +A                                    G 
Sbjct: 668  PDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCCSQTGDWEFACGV 727

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  M+ K + PD V  +ALI   G +G +D AF++L E +
Sbjct: 728  YNDMKKKGIAPDEVFISALIDVAGHAGKLDAAFELLQEAK 767


>ref|XP_012442077.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 998

 Score =  362 bits (929), Expect = 4e-97
 Identities = 225/491 (45%), Positives = 297/491 (60%), Gaps = 5/491 (1%)
 Frame = -2

Query: 1460 DPGNLYKETTLEEMKHVFEDSENGHVVDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVL 1281
            + G+L ++T  +E   + E  +  +     K++L   ++ +N +  M+ K S     + L
Sbjct: 30   ETGDLQRDTFAKENGGLTEHMKEVNDASESKEVLLQETAVVNGDS-MLTKASESNGADFL 88

Query: 1280 SSFSNNGFAQTEEDMGHI-LSPGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKVHD 1104
            +  +N+     E     + L P ++ E     P +F      L     V E E       
Sbjct: 89   AFNANDSDVLEESGTTVLPLQPTVLLESGAGQPFTFATQRSGLHLEERVNEFEADYPRLA 148

Query: 1103 VRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILS 924
            V  K +    S+ +VE   +    ++GE +V +++   +  RE++++F E      +  S
Sbjct: 149  VEPKSSA---SSVLVEDAVV----LIGEDKVRNYDIFRESGREELHTFYEADHLVAKSSS 201

Query: 923  CFEGASAISPHCRLQENASISPLLTP--QKLNGAEESLKNLLHATEYFKERVPVAFYKDL 750
                   +S H     +   S L      +LN    S KN L   +  + +V  A ++  
Sbjct: 202  NLT-LKPVSSHFLSSNSNKFSSLKLKLNSELNKDALSAKNSLQTADMVEGKVTQANFQGG 260

Query: 749  SASKRRDSVKPGGVSRDRGLKHQTANRD--MHRSLQPNEIIANSKSDPSEYLSTYSGLLR 576
             + KR+   +     RD+G KH    +D  + +   PN  +AN K  P EYLS Y+ LLR
Sbjct: 261  FSHKRKHLGRGRESPRDKGKKHLIQEKDTKLAQFPFPNGELANDKHHPEEYLSYYNHLLR 320

Query: 575  AGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNM 396
             GRL+D ++LL+ ME+KGLLDMDKVYH +FFK C  +KAVKEAF FTKLI NPTLSTFNM
Sbjct: 321  CGRLSDSVDLLEDMEQKGLLDMDKVYHAKFFKICSKQKAVKEAFRFTKLIANPTLSTFNM 380

Query: 395  LLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTG 216
            L+SVC  S+DSEG F+V RLV+EAG +ADC LYTTLISTCAK+GKVDTMFEVFHEMVN+G
Sbjct: 381  LMSVCGCSKDSEGAFQVLRLVQEAGFQADCILYTTLISTCAKSGKVDTMFEVFHEMVNSG 440

Query: 215  VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAF 36
            VEPNV+TYGALIDGC RAGQV KAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAF
Sbjct: 441  VEPNVNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 500

Query: 35   DVLAEMRAEAQ 3
            DVLAEM AE Q
Sbjct: 501  DVLAEMMAETQ 511



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
 Frame = -2

Query: 551  ELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKLIKN---PTLSTFNMLLSV 384
            ++L+ ++  G    D + +T     C     V   F  F +++ +   P ++T+  L+  
Sbjct: 396  QVLRLVQEAGF-QADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDG 454

Query: 383  CATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVE 210
            CA +      F    +++   +K D  ++  LI+ C ++G VD  F+V  EM+     ++
Sbjct: 455  CARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPID 514

Query: 209  PNVHTYGALIDGCGRAGQVAKA-----------------------------------FGA 135
            P+  T GALI  C  AGQV +A                                    G 
Sbjct: 515  PDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCCSQTGDWEFACGV 574

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  M+ K V PD V  +ALI   G +G +D AF++L E +
Sbjct: 575  YNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAK 614



 Score = 66.6 bits (161), Expect = 5e-08
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
 Frame = -2

Query: 548  LLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKN----PTLSTFNMLLSVC 381
            L + M     +D D +      KAC +   V+ A    K++       T   + + ++ C
Sbjct: 503  LAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCC 562

Query: 380  ATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNV 201
            + + D E    V   +K+ G+  D    + LI      GK+D  FE+  E  N G+   +
Sbjct: 563  SQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAKNHGINSGI 622

Query: 200  HTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAE 21
             +Y +L+  C  A    KA   Y  +++ K+K      NALIT+  ++  + +A +VL+E
Sbjct: 623  VSYSSLMGACSNARNWQKALELYENIKALKLKLTVSTVNALITSLCEANQLPKAMEVLSE 682

Query: 20   M 18
            M
Sbjct: 683  M 683



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
 Frame = -2

Query: 635  IANSKSDPSEYLSTYSGLL----RAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRS 468
            + NS  +P+  ++TY  L+    RAG++         M  K +   D+V       AC  
Sbjct: 436  MVNSGVEPN--VNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKP-DRVVFNALITACGQ 492

Query: 467  KKAVKEAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADC 306
              AV  AF     +       +P   T   L+  C+ +   E   EV +++ +  ++   
Sbjct: 493  SGAVDRAFDVLAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTP 552

Query: 305  KLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGI 126
            ++YT  ++ C++ G  +    V+++M   GV P+     ALID  G AG++  AF     
Sbjct: 553  EVYTIAVNCCSQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQE 612

Query: 125  MRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
             ++  +    V +++L+ AC  +    +A ++   ++A
Sbjct: 613  AKNHGINSGIVSYSSLMGACSNARNWQKALELYENIKA 650


>gb|KJB11196.1| hypothetical protein B456_001G246900 [Gossypium raimondii]
          Length = 999

 Score =  362 bits (929), Expect = 4e-97
 Identities = 225/491 (45%), Positives = 297/491 (60%), Gaps = 5/491 (1%)
 Frame = -2

Query: 1460 DPGNLYKETTLEEMKHVFEDSENGHVVDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVL 1281
            + G+L ++T  +E   + E  +  +     K++L   ++ +N +  M+ K S     + L
Sbjct: 138  ETGDLQRDTFAKENGGLTEHMKEVNDASESKEVLLQETAVVNGDS-MLTKASESNGADFL 196

Query: 1280 SSFSNNGFAQTEEDMGHI-LSPGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKVHD 1104
            +  +N+     E     + L P ++ E     P +F      L     V E E       
Sbjct: 197  AFNANDSDVLEESGTTVLPLQPTVLLESGAGQPFTFATQRSGLHLEERVNEFEADYPRLA 256

Query: 1103 VRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILS 924
            V  K +    S+ +VE   +    ++GE +V +++   +  RE++++F E      +  S
Sbjct: 257  VEPKSSA---SSVLVEDAVV----LIGEDKVRNYDIFRESGREELHTFYEADHLVAKSSS 309

Query: 923  CFEGASAISPHCRLQENASISPLLTP--QKLNGAEESLKNLLHATEYFKERVPVAFYKDL 750
                   +S H     +   S L      +LN    S KN L   +  + +V  A ++  
Sbjct: 310  NLT-LKPVSSHFLSSNSNKFSSLKLKLNSELNKDALSAKNSLQTADMVEGKVTQANFQGG 368

Query: 749  SASKRRDSVKPGGVSRDRGLKHQTANRD--MHRSLQPNEIIANSKSDPSEYLSTYSGLLR 576
             + KR+   +     RD+G KH    +D  + +   PN  +AN K  P EYLS Y+ LLR
Sbjct: 369  FSHKRKHLGRGRESPRDKGKKHLIQEKDTKLAQFPFPNGELANDKHHPEEYLSYYNHLLR 428

Query: 575  AGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNM 396
             GRL+D ++LL+ ME+KGLLDMDKVYH +FFK C  +KAVKEAF FTKLI NPTLSTFNM
Sbjct: 429  CGRLSDSVDLLEDMEQKGLLDMDKVYHAKFFKICSKQKAVKEAFRFTKLIANPTLSTFNM 488

Query: 395  LLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTG 216
            L+SVC  S+DSEG F+V RLV+EAG +ADC LYTTLISTCAK+GKVDTMFEVFHEMVN+G
Sbjct: 489  LMSVCGCSKDSEGAFQVLRLVQEAGFQADCILYTTLISTCAKSGKVDTMFEVFHEMVNSG 548

Query: 215  VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAF 36
            VEPNV+TYGALIDGC RAGQV KAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAF
Sbjct: 549  VEPNVNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 608

Query: 35   DVLAEMRAEAQ 3
            DVLAEM AE Q
Sbjct: 609  DVLAEMMAETQ 619



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
 Frame = -2

Query: 551  ELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKLIKN---PTLSTFNMLLSV 384
            ++L+ ++  G    D + +T     C     V   F  F +++ +   P ++T+  L+  
Sbjct: 504  QVLRLVQEAGF-QADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDG 562

Query: 383  CATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVE 210
            CA +      F    +++   +K D  ++  LI+ C ++G VD  F+V  EM+     ++
Sbjct: 563  CARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPID 622

Query: 209  PNVHTYGALIDGCGRAGQVAKA-----------------------------------FGA 135
            P+  T GALI  C  AGQV +A                                    G 
Sbjct: 623  PDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCCSQTGDWEFACGV 682

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  M+ K V PD V  +ALI   G +G +D AF++L E +
Sbjct: 683  YNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAK 722



 Score = 66.6 bits (161), Expect = 5e-08
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
 Frame = -2

Query: 548  LLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKN----PTLSTFNMLLSVC 381
            L + M     +D D +      KAC +   V+ A    K++       T   + + ++ C
Sbjct: 611  LAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCC 670

Query: 380  ATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNV 201
            + + D E    V   +K+ G+  D    + LI      GK+D  FE+  E  N G+   +
Sbjct: 671  SQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAKNHGINSGI 730

Query: 200  HTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAE 21
             +Y +L+  C  A    KA   Y  +++ K+K      NALIT+  ++  + +A +VL+E
Sbjct: 731  VSYSSLMGACSNARNWQKALELYENIKALKLKLTVSTVNALITSLCEANQLPKAMEVLSE 790

Query: 20   M 18
            M
Sbjct: 791  M 791



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
 Frame = -2

Query: 635  IANSKSDPSEYLSTYSGLL----RAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRS 468
            + NS  +P+  ++TY  L+    RAG++         M  K +   D+V       AC  
Sbjct: 544  MVNSGVEPN--VNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKP-DRVVFNALITACGQ 600

Query: 467  KKAVKEAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADC 306
              AV  AF     +       +P   T   L+  C+ +   E   EV +++ +  ++   
Sbjct: 601  SGAVDRAFDVLAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTP 660

Query: 305  KLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGI 126
            ++YT  ++ C++ G  +    V+++M   GV P+     ALID  G AG++  AF     
Sbjct: 661  EVYTIAVNCCSQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQE 720

Query: 125  MRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
             ++  +    V +++L+ AC  +    +A ++   ++A
Sbjct: 721  AKNHGINSGIVSYSSLMGACSNARNWQKALELYENIKA 758


>ref|XP_012442072.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X1 [Gossypium raimondii]
            gi|763743696|gb|KJB11195.1| hypothetical protein
            B456_001G246900 [Gossypium raimondii]
          Length = 1106

 Score =  362 bits (929), Expect = 4e-97
 Identities = 225/491 (45%), Positives = 297/491 (60%), Gaps = 5/491 (1%)
 Frame = -2

Query: 1460 DPGNLYKETTLEEMKHVFEDSENGHVVDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEVL 1281
            + G+L ++T  +E   + E  +  +     K++L   ++ +N +  M+ K S     + L
Sbjct: 138  ETGDLQRDTFAKENGGLTEHMKEVNDASESKEVLLQETAVVNGDS-MLTKASESNGADFL 196

Query: 1280 SSFSNNGFAQTEEDMGHI-LSPGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKVHD 1104
            +  +N+     E     + L P ++ E     P +F      L     V E E       
Sbjct: 197  AFNANDSDVLEESGTTVLPLQPTVLLESGAGQPFTFATQRSGLHLEERVNEFEADYPRLA 256

Query: 1103 VRSKHALKEESNKIVEGGELSDELVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILS 924
            V  K +    S+ +VE   +    ++GE +V +++   +  RE++++F E      +  S
Sbjct: 257  VEPKSSA---SSVLVEDAVV----LIGEDKVRNYDIFRESGREELHTFYEADHLVAKSSS 309

Query: 923  CFEGASAISPHCRLQENASISPLLTP--QKLNGAEESLKNLLHATEYFKERVPVAFYKDL 750
                   +S H     +   S L      +LN    S KN L   +  + +V  A ++  
Sbjct: 310  NLT-LKPVSSHFLSSNSNKFSSLKLKLNSELNKDALSAKNSLQTADMVEGKVTQANFQGG 368

Query: 749  SASKRRDSVKPGGVSRDRGLKHQTANRD--MHRSLQPNEIIANSKSDPSEYLSTYSGLLR 576
             + KR+   +     RD+G KH    +D  + +   PN  +AN K  P EYLS Y+ LLR
Sbjct: 369  FSHKRKHLGRGRESPRDKGKKHLIQEKDTKLAQFPFPNGELANDKHHPEEYLSYYNHLLR 428

Query: 575  AGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNM 396
             GRL+D ++LL+ ME+KGLLDMDKVYH +FFK C  +KAVKEAF FTKLI NPTLSTFNM
Sbjct: 429  CGRLSDSVDLLEDMEQKGLLDMDKVYHAKFFKICSKQKAVKEAFRFTKLIANPTLSTFNM 488

Query: 395  LLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTG 216
            L+SVC  S+DSEG F+V RLV+EAG +ADC LYTTLISTCAK+GKVDTMFEVFHEMVN+G
Sbjct: 489  LMSVCGCSKDSEGAFQVLRLVQEAGFQADCILYTTLISTCAKSGKVDTMFEVFHEMVNSG 548

Query: 215  VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAF 36
            VEPNV+TYGALIDGC RAGQV KAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAF
Sbjct: 549  VEPNVNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 608

Query: 35   DVLAEMRAEAQ 3
            DVLAEM AE Q
Sbjct: 609  DVLAEMMAETQ 619



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
 Frame = -2

Query: 551  ELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKLIKN---PTLSTFNMLLSV 384
            ++L+ ++  G    D + +T     C     V   F  F +++ +   P ++T+  L+  
Sbjct: 504  QVLRLVQEAGF-QADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDG 562

Query: 383  CATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVE 210
            CA +      F    +++   +K D  ++  LI+ C ++G VD  F+V  EM+     ++
Sbjct: 563  CARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPID 622

Query: 209  PNVHTYGALIDGCGRAGQVAKA-----------------------------------FGA 135
            P+  T GALI  C  AGQV +A                                    G 
Sbjct: 623  PDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCCSQTGDWEFACGV 682

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  M+ K V PD V  +ALI   G +G +D AF++L E +
Sbjct: 683  YNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAK 722



 Score = 66.6 bits (161), Expect = 5e-08
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
 Frame = -2

Query: 548  LLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKN----PTLSTFNMLLSVC 381
            L + M     +D D +      KAC +   V+ A    K++       T   + + ++ C
Sbjct: 611  LAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCC 670

Query: 380  ATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNV 201
            + + D E    V   +K+ G+  D    + LI      GK+D  FE+  E  N G+   +
Sbjct: 671  SQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAKNHGINSGI 730

Query: 200  HTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAE 21
             +Y +L+  C  A    KA   Y  +++ K+K      NALIT+  ++  + +A +VL+E
Sbjct: 731  VSYSSLMGACSNARNWQKALELYENIKALKLKLTVSTVNALITSLCEANQLPKAMEVLSE 790

Query: 20   M 18
            M
Sbjct: 791  M 791



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
 Frame = -2

Query: 635  IANSKSDPSEYLSTYSGLL----RAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRS 468
            + NS  +P+  ++TY  L+    RAG++         M  K +   D+V       AC  
Sbjct: 544  MVNSGVEPN--VNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKP-DRVVFNALITACGQ 600

Query: 467  KKAVKEAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADC 306
              AV  AF     +       +P   T   L+  C+ +   E   EV +++ +  ++   
Sbjct: 601  SGAVDRAFDVLAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTP 660

Query: 305  KLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGI 126
            ++YT  ++ C++ G  +    V+++M   GV P+     ALID  G AG++  AF     
Sbjct: 661  EVYTIAVNCCSQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQE 720

Query: 125  MRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
             ++  +    V +++L+ AC  +    +A ++   ++A
Sbjct: 721  AKNHGINSGIVSYSSLMGACSNARNWQKALELYENIKA 758


>ref|XP_010088683.1| hypothetical protein L484_003235 [Morus notabilis]
            gi|587846355|gb|EXB36850.1| hypothetical protein
            L484_003235 [Morus notabilis]
          Length = 1125

 Score =  362 bits (928), Expect = 5e-97
 Identities = 216/491 (43%), Positives = 305/491 (62%), Gaps = 23/491 (4%)
 Frame = -2

Query: 1406 EDSENGHVVDVEKDLLKCHSSD-LNCEGDMIDKLSRGPVKEVLSSFSNNGFAQTEEDMGH 1230
            E+ EN H    ++  L+ H++  +N E  +   L       ++S  SN+ F      +  
Sbjct: 153  ENRENSHASVEKQAPLQFHNATVMNQETLVTSALQSSGSGVLVSGASNSTFLNESSVLDQ 212

Query: 1229 ILSPGMINEVDVLAPESFVIDMPDLL-------CRGGVEETEI---RPKVHDVRSKHALK 1080
             LSP +++E  +L P    +++P+ L        R  +E +E       V D  S H  +
Sbjct: 213  SLSP-LLSESAILEP----LNLPESLNGFQLDKLREEIESSESLFGSASVQDNGSVHLQE 267

Query: 1079 EESNKIVEGGELSDEL---------VVGEFQVSSFNGL-SKYVREDIYSFCEETQSGRRI 930
            E  +K    G    EL         +  E +++S+N L  + VR++++ F +E +S  + 
Sbjct: 268  EIVSKFKVNGHSVAELHEDETDKRRLGEEGEMTSYNFLLGESVRKELHMFYDENKSDEKG 327

Query: 929  LSCFEGASAISPHCRLQENASISPLLTPQKLNGAEESLKNLLHATEYFKERVPVAFYKDL 750
            +    G +++SP+     + ++S  L    + G E +        +  + ++P + +K+ 
Sbjct: 328  IGKINGHNSLSPNASAPNSKTVSASLRDTIVKGGEATALFPPLKADNHESKIPFSSHKEG 387

Query: 749  SASKRRDSVKPGGVSRD--RGLKHQTANRDMHRSLQPNEIIANSKSDPSEYLSTYSGLLR 576
            +    ++S +  G SRD  +G   Q  ++   +  + N +    K  PSE +STY+ L++
Sbjct: 388  TLRSGKNSGQGRGYSRDLIKGNLAQNNHKAPAKLTRLNGLDVEQKHHPSEQISTYNRLVK 447

Query: 575  AGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNM 396
             GRL+D +ELL+ MER+GLLDM+KVYH +FFK C+ +KAV EAF +  LI  PTLST+NM
Sbjct: 448  DGRLSDAVELLEDMERRGLLDMNKVYHAKFFKICKFQKAVNEAFRYVNLIPYPTLSTYNM 507

Query: 395  LLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTG 216
            L+SVC +SQD EG F+V +LV+EAGLKADCKLYTTLISTCAK+GKVD+MFEVFH+MVN G
Sbjct: 508  LMSVCTSSQDPEGAFKVMQLVQEAGLKADCKLYTTLISTCAKSGKVDSMFEVFHKMVNDG 567

Query: 215  VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAF 36
            VEPNVHTYG+LIDGC RAGQVAKAFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAF
Sbjct: 568  VEPNVHTYGSLIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 627

Query: 35   DVLAEMRAEAQ 3
            DVLAEM AE +
Sbjct: 628  DVLAEMTAEPE 638



 Score = 70.5 bits (171), Expect = 3e-09
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 6/204 (2%)
 Frame = -2

Query: 605  YLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKL 429
            Y S   G  RAG++         M  K +   D+V       AC    AV  AF    ++
Sbjct: 575  YGSLIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEM 633

Query: 428  IKNPTLS-----TFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
               P L      T   L+  CA S   +   EV ++V +  LK   ++YT  ++T +  G
Sbjct: 634  TAEPELIDPDHITVGALMKACANSGQVDRAREVYKMVHQYNLKGTPEVYTIAVNTSSHMG 693

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFN 84
              +    V+ +M   GV P+     ALID  G AG++  AF      +++ VK   V ++
Sbjct: 694  DWEFARNVYDDMTRKGVLPDEMFLSALIDAAGHAGKLDAAFEILSEAKNRGVKFGTVSYS 753

Query: 83   ALITACGQSGAVDRAFDVLAEMRA 12
            +L+ AC  +    +A ++  ++++
Sbjct: 754  SLMGACSNAKNWQKALELYEDLKS 777



 Score = 68.2 bits (165), Expect = 2e-08
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
 Frame = -2

Query: 629  NSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKG-LLDMDKVYHTRFFKACRSKKAVK 453
            N K D   + +  +   ++G +    ++L  M  +  L+D D +      KAC +   V 
Sbjct: 602  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMTAEPELIDPDHITVGALMKACANSGQVD 661

Query: 452  EAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE----AGLKADCKLYTTLI 285
             A    K++    L     + ++   +    G +E  R V +     G+  D    + LI
Sbjct: 662  RAREVYKMVHQYNLKGTPEVYTIAVNTSSHMGDWEFARNVYDDMTRKGVLPDEMFLSALI 721

Query: 284  STCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVK 105
                  GK+D  FE+  E  N GV+    +Y +L+  C  A    KA   Y  ++S K +
Sbjct: 722  DAAGHAGKLDAAFEILSEAKNRGVKFGTVSYSSLMGACSNAKNWQKALELYEDLKSTKSE 781

Query: 104  PDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
                  NALITA      + +A +VL+EM+A
Sbjct: 782  QTVSTVNALITALCDGDQLQKAMEVLSEMKA 812


>ref|XP_012084399.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic [Jatropha curcas]
            gi|643715661|gb|KDP27602.1| hypothetical protein
            JCGZ_19607 [Jatropha curcas]
          Length = 1112

 Score =  361 bits (927), Expect = 7e-97
 Identities = 219/507 (43%), Positives = 309/507 (60%), Gaps = 21/507 (4%)
 Frame = -2

Query: 1460 DPGNLYKETTLEEMKHVFEDS-ENGHVVDVEKDLLKCHSSDLNCEGDMIDKLSRGPVKEV 1284
            D GN  +     E +++ E + EN H ++ E+ +++   + L     ++ + S     + 
Sbjct: 137  DVGNSLRSILATESENLVEKAIENSHAIEGEETVVQVCENTLRSTSSILFETSEYDNADF 196

Query: 1283 LSSFSNNGFAQTEEDMGHILSPGMINEVDVLAPESFVIDMPDLLCRGGVEETEIRPK--- 1113
              S  +N     E +  ++     +++   + PES  + +P +L   G+ E  +      
Sbjct: 197  PVSNVSNYVVPKESEATNV----SVSKESAI-PESEKV-LPLVLNARGMSELTLEKSGNE 250

Query: 1112 --VHDVRSK--HALKEESNKIV------EGGELSDELVVGEFQVSSFNGLSKY-VREDIY 966
              VH+V ++  H +++ SN         E GE  D        +SS++G+ K   RED+Y
Sbjct: 251  TDVHEVDAELTHLMEQMSNNTASPPVNYEAGEKID--------LSSYHGIIKESAREDLY 302

Query: 965  SFCEETQSGRRILSCFEGASAISPHCRLQENASISPLLTPQKLNG----AEESLKNLLHA 798
             F +++QS  +      G++++S H     + SI    +  K+NG    A+ S +     
Sbjct: 303  MFYDKSQSVVKSPLNLNGSNSVSSHA----SPSIGNSFSSFKVNGIVKEADSSAQQSPKI 358

Query: 797  TEYFKERVPVAFYKDLSASKRRDSVKPGG--VSRDRGLKHQTANRDMHRSLQPNEIIANS 624
             E   ++V +A Y   S+ K  ++ +  G    +++G   Q     +     PN +    
Sbjct: 359  AESVDKKVRLAHYVRESSRKNENTRRRRGFPTEKEKGRPVQNNQIKLPEFPYPNGVHVID 418

Query: 623  KSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF 444
            K  PS+ +  Y+ LLR GRLT+C+ LL+ MER+GLLDM+K+YH +FFK C+ +KAV EAF
Sbjct: 419  KDHPSQQVHAYNRLLRDGRLTECVSLLEDMERRGLLDMNKIYHAKFFKICKIQKAVNEAF 478

Query: 443  CFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
             F KL+ NPTLST+NML+SVCA+SQDS G F+V +L + +GLKADC+LYTTLISTCAK+G
Sbjct: 479  RFCKLVPNPTLSTYNMLMSVCASSQDSSGAFQVLQLARGSGLKADCRLYTTLISTCAKSG 538

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFN 84
            KVDTMFEVFH+MVN GVEPNVHTYGALIDGC RAGQ+AKAFGAYGIM SKKVKPDRV+FN
Sbjct: 539  KVDTMFEVFHKMVNAGVEPNVHTYGALIDGCARAGQLAKAFGAYGIMSSKKVKPDRVVFN 598

Query: 83   ALITACGQSGAVDRAFDVLAEMRAEAQ 3
            ALI ACGQSGAVDRAFDVLAEMRAE Q
Sbjct: 599  ALINACGQSGAVDRAFDVLAEMRAETQ 625



 Score = 71.6 bits (174), Expect = 1e-09
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 6/211 (2%)
 Frame = -2

Query: 623  KSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF 444
            K+D   Y +  S   ++G++    E+   M   G+      Y        R+ +  K   
Sbjct: 521  KADCRLYTTLISTCAKSGKVDTMFEVFHKMVNAGVEPNVHTYGALIDGCARAGQLAKAFG 580

Query: 443  CF----TKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTT--LIS 282
             +    +K +K P    FN L++ C  S   +  F+V   ++      D    T   LI+
Sbjct: 581  AYGIMSSKKVK-PDRVVFNALINACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIN 639

Query: 281  TCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKP 102
             CAK G+++   EV++ M    ++     Y   ++ C + G    A   Y  M+ K V P
Sbjct: 640  ACAKAGQINRAKEVYNMMHEFNIKGTPEVYTIAVNCCSQTGDWEFARSVYDDMKRKDVAP 699

Query: 101  DRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            D +  +ALI   G +G VD AF++L E R +
Sbjct: 700  DEMFLSALIDVAGHAGKVDVAFEILQEARIQ 730



 Score = 61.6 bits (148), Expect = 1e-06
 Identities = 58/239 (24%), Positives = 91/239 (38%), Gaps = 41/239 (17%)
 Frame = -2

Query: 605  YLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLI 426
            Y +   G  RAG+L         M  K +   D+V       AC    AV  AF     +
Sbjct: 562  YGALIDGCARAGQLAKAFGAYGIMSSKKVKP-DRVVFNALINACGQSGAVDRAFDVLAEM 620

Query: 425  K------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
            +      +P   T   L++ CA +       EV  ++ E  +K   ++YT  ++ C++ G
Sbjct: 621  RAETQPIDPDHITVGALINACAKAGQINRAKEVYNMMHEFNIKGTPEVYTIAVNCCSQTG 680

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQV----------------------- 153
              +    V+ +M    V P+     ALID  G AG+V                       
Sbjct: 681  DWEFARSVYDDMKRKDVAPDEMFLSALIDVAGHAGKVDVAFEILQEARIQGMQLGIIPYS 740

Query: 152  ------------AKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
                         KA   Y  ++S KV P     NALITA      + +A +V++EM++
Sbjct: 741  SLMGACSNAKNWQKALELYEDIKSIKVNPTVPTLNALITALCDGDQLPKAIEVMSEMKS 799


>ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525928|gb|EEF28334.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1129

 Score =  360 bits (923), Expect = 2e-96
 Identities = 204/410 (49%), Positives = 267/410 (65%), Gaps = 8/410 (1%)
 Frame = -2

Query: 1214 MINEVDVLAPESFVIDMPDLLCRGGVEETEIRPKVHDVRSKHALKEESNKIVEGGELSDE 1035
            +I+  + + P  F  ++ +L      +ETE+     D      L+E+SN       ++DE
Sbjct: 243  VIHGSESVLPLEFARELSELTIERSRDETEV-----DSELTQLLEEKSNDTASS-TMNDE 296

Query: 1034 LVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASISPL 855
            +   +   S ++   K  RED+Y F EE+QS  +  S   G   +S H       +IS L
Sbjct: 297  IGKKDGISSYYDITKKSAREDLYKFYEESQSTEKSPSNLNGLDTVSSHAAPLIGNNISSL 356

Query: 854  LTPQKLNGAEESLKNLLHATEYFKE----RVPVAFYKDLSASKRRDSVKPGGVSRDRGLK 687
                K+NG  +  + L   +  F E    +V +A Y+  ++ K        G  R++   
Sbjct: 357  ----KVNGVGKEAELLSPQSPQFAETVERKVHLARYERGASRKNEHIGGRRGFPREKEKG 412

Query: 686  HQTANRDMHRSLQ----PNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGL 519
            H    +D H +L     PN + + +K   +E +  Y+ LLR GRL +C++LL+ MER+GL
Sbjct: 413  HVI--QDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGL 470

Query: 518  LDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRR 339
            LDM K+YH +FFK C+ +KAVKEAF F KL+ NP+LSTFNML+SVC++SQDS+G FEV R
Sbjct: 471  LDMSKIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLR 530

Query: 338  LVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAG 159
            L + AGLKADCKLYTTLISTCAK+GKVD MFEVFHEMVN GVEPNVHTYG+LIDGC +AG
Sbjct: 531  LAQGAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAG 590

Query: 158  QVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            Q+AKAFGAYGI+RSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM AE
Sbjct: 591  QMAKAFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAE 640



 Score = 68.9 bits (167), Expect = 9e-09
 Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 9/217 (4%)
 Frame = -2

Query: 632  ANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVK 453
            A  K+D   Y +  S   ++G++    E+   M   G+      Y +     C     + 
Sbjct: 535  AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGS-LIDGCAKAGQMA 593

Query: 452  EAFCFTKLIKN----PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKA-----DCKL 300
            +AF    ++++    P    FN L++ C  S   +  F+V   + E G +      D   
Sbjct: 594  KAFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMGAETHPIDPDHIT 650

Query: 299  YTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMR 120
               L+  CAK G+VD   EV++ +    ++     Y   ++ C + G    A   Y  M 
Sbjct: 651  VGALMKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMT 710

Query: 119  SKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
             K V PD +  +AL+   G +G VD AF+ L E R +
Sbjct: 711  RKGVAPDEMFLSALVDVAGHAGLVDIAFETLQEARTQ 747



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 6/204 (2%)
 Frame = -2

Query: 605  YLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLI 426
            Y S   G  +AG++         +  K +   D+V       AC    AV  AF     +
Sbjct: 579  YGSLIDGCAKAGQMAKAFGAYGILRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEM 637

Query: 425  K------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNG 264
                   +P   T   L+  CA +   +   EV  ++ +  +K   ++YT  ++ C++ G
Sbjct: 638  GAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTG 697

Query: 263  KVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFN 84
              +    V+ +M   GV P+     AL+D  G AG V  AF      R++  +   V ++
Sbjct: 698  DWEFARSVYDDMTRKGVAPDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYS 757

Query: 83   ALITACGQSGAVDRAFDVLAEMRA 12
            +L+ AC  +    +A ++  +++A
Sbjct: 758  SLMGACSNAKNWQKALELYEDIKA 781


>ref|XP_012442074.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X2 [Gossypium raimondii]
          Length = 1073

 Score =  359 bits (922), Expect = 3e-96
 Identities = 197/348 (56%), Positives = 243/348 (69%), Gaps = 4/348 (1%)
 Frame = -2

Query: 1034 LVVGEFQVSSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASISPL 855
            +++GE +V +++   +  RE++++F E      +  S       +S H     +   S L
Sbjct: 240  VLIGEDKVRNYDIFRESGREELHTFYEADHLVAKSSSNLT-LKPVSSHFLSSNSNKFSSL 298

Query: 854  LTP--QKLNGAEESLKNLLHATEYFKERVPVAFYKDLSASKRRDSVKPGGVSRDRGLKHQ 681
                  +LN    S KN L   +  + +V  A ++   + KR+   +     RD+G KH 
Sbjct: 299  KLKLNSELNKDALSAKNSLQTADMVEGKVTQANFQGGFSHKRKHLGRGRESPRDKGKKHL 358

Query: 680  TANRD--MHRSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMD 507
               +D  + +   PN  +AN K  P EYLS Y+ LLR GRL+D ++LL+ ME+KGLLDMD
Sbjct: 359  IQEKDTKLAQFPFPNGELANDKHHPEEYLSYYNHLLRCGRLSDSVDLLEDMEQKGLLDMD 418

Query: 506  KVYHTRFFKACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKE 327
            KVYH +FFK C  +KAVKEAF FTKLI NPTLSTFNML+SVC  S+DSEG F+V RLV+E
Sbjct: 419  KVYHAKFFKICSKQKAVKEAFRFTKLIANPTLSTFNMLMSVCGCSKDSEGAFQVLRLVQE 478

Query: 326  AGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAK 147
            AG +ADC LYTTLISTCAK+GKVDTMFEVFHEMVN+GVEPNV+TYGALIDGC RAGQV K
Sbjct: 479  AGFQADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDGCARAGQVPK 538

Query: 146  AFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAEAQ 3
            AFGAYGIMRSK VKPDRV+FNALITACGQSGAVDRAFDVLAEM AE Q
Sbjct: 539  AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQ 586



 Score = 77.4 bits (189), Expect = 3e-11
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
 Frame = -2

Query: 551  ELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAF-CFTKLIKN---PTLSTFNMLLSV 384
            ++L+ ++  G    D + +T     C     V   F  F +++ +   P ++T+  L+  
Sbjct: 471  QVLRLVQEAGF-QADCILYTTLISTCAKSGKVDTMFEVFHEMVNSGVEPNVNTYGALIDG 529

Query: 383  CATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMV--NTGVE 210
            CA +      F    +++   +K D  ++  LI+ C ++G VD  F+V  EM+     ++
Sbjct: 530  CARAGQVPKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMMAETQPID 589

Query: 209  PNVHTYGALIDGCGRAGQVAKA-----------------------------------FGA 135
            P+  T GALI  C  AGQV +A                                    G 
Sbjct: 590  PDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCCSQTGDWEFACGV 649

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  M+ K V PD V  +ALI   G +G +D AF++L E +
Sbjct: 650  YNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAK 689



 Score = 66.6 bits (161), Expect = 5e-08
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
 Frame = -2

Query: 548  LLQSMERKGLLDMDKVYHTRFFKACRSKKAVKEAFCFTKLIKN----PTLSTFNMLLSVC 381
            L + M     +D D +      KAC +   V+ A    K++       T   + + ++ C
Sbjct: 578  LAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTPEVYTIAVNCC 637

Query: 380  ATSQDSEGPFEVRRLVKEAGLKADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNV 201
            + + D E    V   +K+ G+  D    + LI      GK+D  FE+  E  N G+   +
Sbjct: 638  SQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQEAKNHGINSGI 697

Query: 200  HTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAE 21
             +Y +L+  C  A    KA   Y  +++ K+K      NALIT+  ++  + +A +VL+E
Sbjct: 698  VSYSSLMGACSNARNWQKALELYENIKALKLKLTVSTVNALITSLCEANQLPKAMEVLSE 757

Query: 20   M 18
            M
Sbjct: 758  M 758



 Score = 62.0 bits (149), Expect = 1e-06
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
 Frame = -2

Query: 635  IANSKSDPSEYLSTYSGLL----RAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRS 468
            + NS  +P+  ++TY  L+    RAG++         M  K +   D+V       AC  
Sbjct: 511  MVNSGVEPN--VNTYGALIDGCARAGQVPKAFGAYGIMRSKNVKP-DRVVFNALITACGQ 567

Query: 467  KKAVKEAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADC 306
              AV  AF     +       +P   T   L+  C+ +   E   EV +++ +  ++   
Sbjct: 568  SGAVDRAFDVLAEMMAETQPIDPDHITVGALIKACSNAGQVERAREVYKMMHKFNIRGTP 627

Query: 305  KLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGI 126
            ++YT  ++ C++ G  +    V+++M   GV P+     ALID  G AG++  AF     
Sbjct: 628  EVYTIAVNCCSQTGDWEFACGVYNDMKKKGVAPDEVFISALIDVAGHAGKLDAAFELLQE 687

Query: 125  MRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
             ++  +    V +++L+ AC  +    +A ++   ++A
Sbjct: 688  AKNHGINSGIVSYSSLMGACSNARNWQKALELYENIKA 725


>ref|XP_010920272.1| PREDICTED: pentatricopeptide repeat-containing protein MRL1,
            chloroplastic isoform X2 [Elaeis guineensis]
          Length = 1039

 Score =  354 bits (909), Expect = 9e-95
 Identities = 219/457 (47%), Positives = 283/457 (61%), Gaps = 13/457 (2%)
 Frame = -2

Query: 1340 LNCEGDMIDKLSRGPVKEVLSSF--SNNGFAQTEEDMGHILSPGMINEVDVLAPESFVID 1167
            L  +G + +K+ R      L +F  ++N  A+T        S   ++++D L        
Sbjct: 166  LKLQGTLSNKVQR---TSELPAFIRTDNASAKTTGTEEFKCSSSQVHKLDALEQNDSGNK 222

Query: 1166 MPDLLCRGGVEETEIRPKVHDVR-------SKHALKEESNKIVEGGELSDELVVG-EFQV 1011
            +PD L  G   E        D+        S   ++++  +I +  EL      G E   
Sbjct: 223  LPDSLT-GKQREAVAVSDAPDIIVEPTFSWSSAQVEKKQIEINQDNELDCIAAKGDELCP 281

Query: 1010 SSFNGLSKYVREDIYSFCEETQSGRRILSCFEGASAISPHCRLQENASISPLLTPQKLNG 831
            S ++GL K   + +Y++ EE    R I SCF+  SA   H  L +N+S    L      G
Sbjct: 282  SIYDGLMKQNAKAVYAYNEEMPEVRSI-SCFKSLSAGPLHLILHDNSSSYSRLRHAVKFG 340

Query: 830  AEESLKNLLHATEYFKERVPVAFYKDLSASKRRDSVKPGGVSRDRGLKHQTANRD-MHRS 654
               +  +   A    + + P A + +   SK ++  K    +RD G      N D  + S
Sbjct: 341  GIRAKASPCSA----EGQKPSACFNEGRTSKGKEIDKLHRFTRDMGRSPGHGNDDNANLS 396

Query: 653  L--QPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFK 480
            L  +PN  +    + P  YL  Y  LLR GRL DC++LL+SMERKGLLDMDKV+HT F K
Sbjct: 397  LFPEPNGNLVKGTNYPPGYLRAYDRLLRHGRLRDCVDLLESMERKGLLDMDKVHHTSFLK 456

Query: 479  ACRSKKAVKEAFCFTKLIKNPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKL 300
            AC+ +KA+KEAF F+KLI+NP++STFNMLLSVCA+SQD +G F+V  L+KEAGLK DCKL
Sbjct: 457  ACKGQKALKEAFRFSKLIRNPSMSTFNMLLSVCASSQDFDGAFQVMLLIKEAGLKPDCKL 516

Query: 299  YTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMR 120
            YTTLISTCAK+GKVD MFE+FHEMVN G+EPNV+TYGALIDGC RAGQVAKAFGAYGIMR
Sbjct: 517  YTTLISTCAKSGKVDAMFEIFHEMVNAGIEPNVNTYGALIDGCARAGQVAKAFGAYGIMR 576

Query: 119  SKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMRAE 9
            SKKV+PDRV+FNALITACG+SGAVDRAFDVLAEMRAE
Sbjct: 577  SKKVQPDRVVFNALITACGESGAVDRAFDVLAEMRAE 613



 Score = 72.0 bits (175), Expect = 1e-09
 Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
 Frame = -2

Query: 632  ANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVK 453
            A  + + + Y +   G  RAG++         M  K +   D+V       AC    AV 
Sbjct: 543  AGIEPNVNTYGALIDGCARAGQVAKAFGAYGIMRSKKV-QPDRVVFNALITACGESGAVD 601

Query: 452  EAFCFTKLIK------NPTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTT 291
             AF     ++      +P   T   L+  C  +   +   EV +++ E  +K   ++YT 
Sbjct: 602  RAFDVLAEMRAEPKPIDPDHVTIGALIKTCTQAGQVDRAHEVYKMLHEYNIKGTPEVYTI 661

Query: 290  LISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKK 111
             + +C++ G ++    ++ +M   GV P+      LID  G AG+V  AF      ++K 
Sbjct: 662  AVKSCSQRGDLEFALRIYDDMKRNGVVPDEMFLSTLIDVAGHAGKVDAAFRILQDAKNKG 721

Query: 110  VKPDRVIFNALITACGQSGAVDRAFDVLAEMRA 12
            V+   V +++L+ AC  + +  +A ++  E++A
Sbjct: 722  VQLGHVSYSSLMGACCNAKSWQKALELYEEIKA 754



 Score = 61.6 bits (148), Expect = 1e-06
 Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 4/195 (2%)
 Frame = -2

Query: 629  NSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGLLDMDKVYHTRFFKACRSKKAVKE 450
            N K  P  Y        + G L   + +   M+R G++  D+++ +           V  
Sbjct: 651  NIKGTPEVYTIAVKSCSQRGDLEFALRIYDDMKRNGVVP-DEMFLSTLIDVAGHAGKVDA 709

Query: 449  AFCFTKLIKNPTLS----TFNMLLSVCATSQDSEGPFEVRRLVKEAGLKADCKLYTTLIS 282
            AF   +  KN  +     +++ L+  C  ++  +   E+   +K   L     +   LI+
Sbjct: 710  AFRILQDAKNKGVQLGHVSYSSLMGACCNAKSWQKALELYEEIKAIKLLPTVSMLNALIT 769

Query: 281  TCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVKP 102
            +     ++    EV  EM   GV PNV TY  LI GC RAG+    F      +   V P
Sbjct: 770  SLCDGYQILKSVEVLDEMKKLGVSPNVITYSVLIVGCERAGEAELGFTLLAEAKGDGVLP 829

Query: 101  DRVIFNALITACGQS 57
            + ++   L   C +S
Sbjct: 830  NLIMCRCLTGLCLRS 844



 Score = 60.5 bits (145), Expect = 3e-06
 Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 5/220 (2%)
 Frame = -2

Query: 659  RSLQPNEIIANSKSDPSEYLSTYSGLLRAGRLTDCIELLQSMERKGL-LDMDKVYHTRFF 483
            + +QP+ ++ N+       L T  G   +G +    ++L  M  +   +D D V      
Sbjct: 578  KKVQPDRVVFNA-------LITACG--ESGAVDRAFDVLAEMRAEPKPIDPDHVTIGALI 628

Query: 482  KACRSKKAVKEAFCFTKLIKN----PTLSTFNMLLSVCATSQDSEGPFEVRRLVKEAGLK 315
            K C     V  A    K++       T   + + +  C+   D E    +   +K  G+ 
Sbjct: 629  KTCTQAGQVDRAHEVYKMLHEYNIKGTPEVYTIAVKSCSQRGDLEFALRIYDDMKRNGVV 688

Query: 314  ADCKLYTTLISTCAKNGKVDTMFEVFHEMVNTGVEPNVHTYGALIDGCGRAGQVAKAFGA 135
             D    +TLI      GKVD  F +  +  N GV+    +Y +L+  C  A    KA   
Sbjct: 689  PDEMFLSTLIDVAGHAGKVDAAFRILQDAKNKGVQLGHVSYSSLMGACCNAKSWQKALEL 748

Query: 134  YGIMRSKKVKPDRVIFNALITACGQSGAVDRAFDVLAEMR 15
            Y  +++ K+ P   + NALIT+      + ++ +VL EM+
Sbjct: 749  YEEIKAIKLLPTVSMLNALITSLCDGYQILKSVEVLDEMK 788