BLASTX nr result
ID: Cinnamomum24_contig00007165
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00007165
(1336 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chro... 396 e-107
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec... 358 7e-96
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec... 358 7e-96
ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation spec... 350 1e-93
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 349 3e-93
ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Mal... 346 3e-92
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 346 3e-92
ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation spec... 345 3e-92
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr... 345 5e-92
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia... 345 5e-92
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr... 345 5e-92
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr... 345 5e-92
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 345 6e-92
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 344 8e-92
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr... 343 1e-91
ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation spec... 343 2e-91
ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation spec... 326 2e-86
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 325 4e-86
ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation spec... 324 8e-86
gb|KHG22501.1| Cleavage and polyadenylation specificity factor s... 323 2e-85
>ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Nelumbo
nucifera]
Length = 599
Score = 396 bits (1018), Expect = e-107
Identities = 204/346 (58%), Positives = 244/346 (70%), Gaps = 3/346 (0%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MDPM EEQLDYGD+EYGGGQK+Q+QG GAI ALA+EE++GEDDEYDDLYNDVNVGDGF++
Sbjct: 1 MDPMAEEQLDYGDEEYGGGQKIQYQGGGAISALAEEEMMGEDDEYDDLYNDVNVGDGFLK 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLE-SIPGVGVDSKASNVGGSFS 741
R EA +P GG+GNGG Q+++ DG S+VP+ + E SIPGVG++ K SN+ FS
Sbjct: 61 LQ--RPEAIVPLGGIGNGGIQAQKTDGSRSRVPEPGGSQEVSIPGVGLEGKGSNMVTGFS 118
Query: 740 NVDQKRTNFSSAKGVEGGAGNYPDGASQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDS 561
+QK+ FS+ G+E G G+YPDG SQK L+M P Q N+GFRGSAP+PPK+G D
Sbjct: 119 --EQKKGGFSAGNGLEEGTGDYPDGVSQKGRPLEMGPNAQGGNLGFRGSAPIPPKVGADP 176
Query: 560 GQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAAN--QPMVNENAGRPILDSGPTML 387
Q KF G + P M +N M N +PM NEN R +++G TML
Sbjct: 177 SQXSGKFAGESSSLPDSGTAGPXSAPQMPSNRMNMNVNMNRPMXNENMNRXAVENGTTML 236
Query: 386 FVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMN 207
FVGELHWWTTDAELE VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M
Sbjct: 237 FVGELHWWTTDAELEXVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPAAAAACKEGMX 296
Query: 206 GHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
GH FNGRACVVAFAS QT++QMGA+Y+NK R MND
Sbjct: 297 GHVFNGRACVVAFASXQTLKQMGAAYLNKTQMQSQSQPQGRRFMND 342
>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
gi|731372808|ref|XP_010650883.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185 isoform
X2 [Vitis vinifera] gi|731372811|ref|XP_010650886.1|
PREDICTED: cleavage and polyadenylation specificity
factor subunit CG7185 isoform X2 [Vitis vinifera]
Length = 650
Score = 358 bits (918), Expect = 7e-96
Identities = 194/347 (55%), Positives = 231/347 (66%), Gaps = 4/347 (1%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MDPM EEQLDY D+EYGG QK+ FQG GAI ALAD+EL+GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDPMAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
HR+EAP P G + G FQ+ + D P K+ + IPGV ++ K SN +
Sbjct: 61 M--HRSEAPAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGLIIPGVSIEGKYSN-----PH 113
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDG--ASQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+K+ + KG E G+ ++ DG SQK L+M QV N+GF+GS P+P K G +
Sbjct: 114 FHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAE 173
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMG--TAANQPMVNENAGRPILDSGPTM 390
+ K G R P ML+N MG N+PMVNEN RP +D+G TM
Sbjct: 174 PSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATM 233
Query: 389 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 210
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M
Sbjct: 234 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGM 293
Query: 209 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
NG+ FNGRACVVAFASPQT++QMGASYMNK RPMND
Sbjct: 294 NGYIFNGRACVVAFASPQTLKQMGASYMNKT--QAQSQSQGRRPMND 338
>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
isoform X1 [Vitis vinifera]
Length = 656
Score = 358 bits (918), Expect = 7e-96
Identities = 194/347 (55%), Positives = 231/347 (66%), Gaps = 4/347 (1%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MDPM EEQLDY D+EYGG QK+ FQG GAI ALAD+EL+GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 7 MDPMAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQ 66
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
HR+EAP P G + G FQ+ + D P K+ + IPGV ++ K SN +
Sbjct: 67 M--HRSEAPAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGLIIPGVSIEGKYSN-----PH 119
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDG--ASQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+K+ + KG E G+ ++ DG SQK L+M QV N+GF+GS P+P K G +
Sbjct: 120 FHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAE 179
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMG--TAANQPMVNENAGRPILDSGPTM 390
+ K G R P ML+N MG N+PMVNEN RP +D+G TM
Sbjct: 180 PSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATM 239
Query: 389 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 210
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M
Sbjct: 240 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGM 299
Query: 209 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
NG+ FNGRACVVAFASPQT++QMGASYMNK RPMND
Sbjct: 300 NGYIFNGRACVVAFASPQTLKQMGASYMNKT--QAQSQSQGRRPMND 344
>ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
[Pyrus x bretschneideri]
Length = 656
Score = 350 bits (899), Expect = 1e-93
Identities = 190/351 (54%), Positives = 231/351 (65%), Gaps = 8/351 (2%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
M+P+GEEQ+DY D+EYGG KLQ+QGSGAI ALADEEL+ EDDE+DDLYNDVNVG+GFMQ
Sbjct: 1 MEPLGEEQIDYEDEEYGGAHKLQYQGSGAISALADEELMVEDDEFDDLYNDVNVGEGFMQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
HR+EAP+P GGVGNGG Q+++ D P +V + IPGV V K S G F
Sbjct: 61 M--HRSEAPLPTGGVGNGGLQAQKTDVPEPRVQSGVSQDLKIPGVSVQGKYSGAGAQFPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+Q AK E G+ Y GAS QK +DM QV ++ F+GS MPP +G D
Sbjct: 119 QNQPPV----AKEPELGSTGYASGASGSQKGRVMDMTHDTQVRHMAFQGSTTMPPNVGVD 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPP----MLANPMGTA--ANQPMVNENAGRPILDS 402
S + K A GPP + N M AN+PMVNEN RP +++
Sbjct: 175 SSDITGK----GNSEFVPSLNPASAGPPGATQIPTNQMSIKINANRPMVNENQIRPPIEN 230
Query: 401 GPTMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXAC 222
G LFVGELHWWTTDAE+E+V+SQYGRVKEIKF+DERASGKSKGYC VEF+D AC
Sbjct: 231 GSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASGKSKGYCQVEFHDQAAATAC 290
Query: 221 KDSMNGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
K+ M+G+ FNGRACVVAFASPQT++QMGASY++K+ RPMND
Sbjct: 291 KEGMDGYVFNGRACVVAFASPQTLKQMGASYLSKSQGQAQAQQPGRRPMND 341
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 349 bits (895), Expect = 3e-93
Identities = 191/347 (55%), Positives = 225/347 (64%), Gaps = 4/347 (1%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+DY ++EYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYNDVNVGDG +Q
Sbjct: 1 MDSMAEEQIDYEEEEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
+ EAP P GVGNG Q K+ D P +V + ++PGV V+ K +N G F
Sbjct: 61 --FQQPEAPPPSAGVGNGRLQVKKTDVPEQQVQAGVSQGSNVPGVSVEGKYTNAGTHFPA 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+ + + G+GNYPDGAS QK + V N+GF+GS PP+ G D
Sbjct: 119 QNDVQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPPRTGVD 175
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 390
M + G + G + AN MG N+ MVNEN RP L++G TM
Sbjct: 176 PSNMPGRVANEPAPVLNPGAAGPQ-GALIPANQMGVNINVNRAMVNENQIRPPLENGGTM 234
Query: 389 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 210
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D ACKD M
Sbjct: 235 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGM 294
Query: 209 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
NGH FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 NGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMND 341
>ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Malus domestica]
gi|657994880|ref|XP_008389756.1| PREDICTED: RNA-binding
protein FUS-like [Malus domestica]
Length = 658
Score = 346 bits (887), Expect = 3e-92
Identities = 188/347 (54%), Positives = 228/347 (65%), Gaps = 4/347 (1%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MDPMG+EQ+DY D+EYGG QKLQ+QGSGAI ALADEE + EDDEYDDLYNDVNVG+GFMQ
Sbjct: 1 MDPMGDEQIDYEDEEYGGSQKLQYQGSGAISALADEEPMVEDDEYDDLYNDVNVGEGFMQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
HR+EAP+P GGVGNGG Q+++ + P + + IPGV V K S G F
Sbjct: 61 M--HRSEAPVPPGGVGNGGLQAQKTNVPEPRARAGVSQDLKIPGVSVQGKYSGAGAQFPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+Q AK E G+ Y GAS QK ++M QV +GF+GS +PP +G D
Sbjct: 119 QNQPPV----AKEPELGSTGYVGGASGSQKGRVMEMTHDTQVRQMGFQGSTTIPPNVGID 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 390
S + K G + N M AN+PMVNEN RP +++G M
Sbjct: 175 SSDITGKGNSEYIPSLNPGTAGPPGAAQIPTNQMSIKINANRPMVNENQIRPPIENGSAM 234
Query: 389 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 210
LFVGELHWWTTDAE+E+ LSQYGRVKEIKF+DERASGKSKGYC VEF+D ACK+ M
Sbjct: 235 LFVGELHWWTTDAEIESXLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGM 294
Query: 209 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
+G+ FNGRACVVAFASPQT++QMGASY++K+ RPMND
Sbjct: 295 DGYVFNGRACVVAFASPQTLKQMGASYLSKSQXQAQAQQPGRRPMND 341
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 346 bits (887), Expect = 3e-92
Identities = 190/347 (54%), Positives = 224/347 (64%), Gaps = 4/347 (1%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+DY ++EYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYNDVNVGDG +Q
Sbjct: 1 MDSMAEEQIDYEEEEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
+ EAP P GVGNG Q K+ D P +V + ++PGV V+ K +N G F
Sbjct: 61 --FQQPEAPPPSAGVGNGRLQVKKTDVPEQQVQAGVSQGSNVPGVSVEGKYTNAGTHFPA 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+ + + G+GNYPDGAS QK + V N+GF+GS P + G D
Sbjct: 119 QNDVQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVD 175
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 390
M + G + G + AN MG N+ MVNEN RP L++G TM
Sbjct: 176 PSNMPGRVANEPAPVLNPGAAGPQ-GALIPANQMGVNINVNRAMVNENQIRPPLENGGTM 234
Query: 389 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 210
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D ACKD M
Sbjct: 235 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGM 294
Query: 209 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
NGH FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 NGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMND 341
>ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Prunus mume]
Length = 647
Score = 345 bits (886), Expect = 3e-92
Identities = 188/347 (54%), Positives = 231/347 (66%), Gaps = 4/347 (1%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MDPM EEQ+DY D+EYGG QKLQ+QGSGAI ALADEE + EDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDPMAEEQIDYEDEEYGGAQKLQYQGSGAISALADEEPMVEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
HR+EAP+P GGVGNGG Q+++ D ++V + IPGV V K S+ F
Sbjct: 61 M--HRSEAPLPPGGVGNGGLQAQKTDVTETRVQAGVSQESKIPGVSVQGKYSSAVAQFP- 117
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+++ AK E G+ Y GAS QK ++M+ QV ++GF+GS MPP IG D
Sbjct: 118 --EQQDQPPVAKEPELGSTGYVGGASGSQKGRAMEMSHDTQVRHMGFQGSTTMPPNIGGD 175
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 390
S + K G M N + AN+PM NEN RP +++G TM
Sbjct: 176 SSDITGKTALESVPSMNSGTAGPTGVTQMPTNQISIKVNANRPMFNENQVRPTVENGSTM 235
Query: 389 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 210
LFVGELHWWTTD+ELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D ACK+ M
Sbjct: 236 LFVGELHWWTTDSELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGM 295
Query: 209 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
+G+ FNGRACVVAFASPQT++QMGASY++K+ RPMND
Sbjct: 296 DGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMND 342
>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
gi|508708844|gb|EOY00741.1| RNA-binding family protein
isoform 6 [Theobroma cacao]
Length = 602
Score = 345 bits (885), Expect = 5e-92
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 384
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 383 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 204
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 203 HAFNGRACVVAFASPQTVRQMGASYMNKN 117
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
gi|508708843|gb|EOY00740.1| RNA-binding family protein
isoform 5, partial [Theobroma cacao]
Length = 656
Score = 345 bits (885), Expect = 5e-92
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 384
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 383 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 204
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 203 HAFNGRACVVAFASPQTVRQMGASYMNKN 117
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
gi|508708842|gb|EOY00739.1| RNA-binding family protein
isoform 4 [Theobroma cacao]
Length = 697
Score = 345 bits (885), Expect = 5e-92
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 384
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 383 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 204
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 203 HAFNGRACVVAFASPQTVRQMGASYMNKN 117
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695496|ref|XP_007044905.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|590695500|ref|XP_007044906.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708839|gb|EOY00736.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708841|gb|EOY00738.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 652
Score = 345 bits (885), Expect = 5e-92
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 384
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 383 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 204
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 203 HAFNGRACVVAFASPQTVRQMGASYMNKN 117
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 345 bits (884), Expect = 6e-92
Identities = 190/344 (55%), Positives = 222/344 (64%), Gaps = 4/344 (1%)
Frame = -3
Query: 1088 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 909
M EEQ+DY +DEYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYNDVNVGDG +Q
Sbjct: 1 MAEEQIDYEEDEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ--F 58
Query: 908 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 729
+ EAP P GVGNG Q K+ D P +V + +IPGV V+ K +N G F +
Sbjct: 59 QQPEAPPPSAGVGNGRLQVKKTDVPEQRVQVGGSQGSNIPGVSVEGKYTNAGSHFPAQND 118
Query: 728 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 555
+ + G+GNYPDGAS QK + V N+GF+GS P + G D
Sbjct: 119 VQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSN 175
Query: 554 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAAN--QPMVNENAGRPILDSGPTMLFV 381
M + G + G + AN MG AN + MVNEN RP L++G TMLFV
Sbjct: 176 MPGRVANEPAPVLNPGAAGPQ-GALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFV 234
Query: 380 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGH 201
GELHWWTTDAELE+VLSQYGR KEIKF+DERASGKSKGYC VEF+D ACKD MNGH
Sbjct: 235 GELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGH 294
Query: 200 AFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 VFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMND 338
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 344 bits (883), Expect = 8e-92
Identities = 189/344 (54%), Positives = 222/344 (64%), Gaps = 4/344 (1%)
Frame = -3
Query: 1088 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 909
M EEQ+DY +DEYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYND+NVGDG +Q
Sbjct: 1 MAEEQIDYEEDEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDINVGDGLLQ--F 58
Query: 908 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 729
+ EAP P GVGNG Q K+ D P +V + +IPGV V+ K +N G F +
Sbjct: 59 QQPEAPPPSAGVGNGRLQVKKTDVPEQRVQVGGSQGSNIPGVSVEGKYTNAGSDFPAQND 118
Query: 728 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 555
+ + G+GNYPDGAS QK + V N+GF+GS P + G D
Sbjct: 119 VQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSN 175
Query: 554 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAAN--QPMVNENAGRPILDSGPTMLFV 381
M + G + G + AN MG AN + MVNEN RP L++G TMLFV
Sbjct: 176 MPGRAANEPAPVLNPGAAGPQ-GALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFV 234
Query: 380 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGH 201
GELHWWTTDAELE+VLSQYGR KEIKF+DERASGKSKGYC VEF+D ACKD MNGH
Sbjct: 235 GELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGH 294
Query: 200 AFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 VFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMND 338
>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695488|ref|XP_007044903.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708837|gb|EOY00734.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 653
Score = 343 bits (881), Expect = 1e-91
Identities = 178/329 (54%), Positives = 224/329 (68%), Gaps = 2/329 (0%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MD M EEQ+D+GD+EYGG QK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGAQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
R+EAP GG+G+ G Q+++ + P + + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPPQPGGMGSTGLQAQKNEAPEPRGEAGGSQGLNIPGVSVQGKHLNVTARYPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
D + + E G+G+YP G S QK ++ QV+N+GF+G + K+G D
Sbjct: 119 QDGQ----PAVSRPEMGSGSYPSGTSISQKGRVMEGTQDTQVKNMGFQGLSSASHKVGID 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 384
+ K G + P + N MG N PM++EN RP +++GPTMLF
Sbjct: 175 PSGVPQKIANVPAQSLNSGTGGPQGAPHVPPNQMGLNVNHPMISENQVRPPIENGPTMLF 234
Query: 383 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 204
VGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M+G
Sbjct: 235 VGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPASAAACKEGMDG 294
Query: 203 HAFNGRACVVAFASPQTVRQMGASYMNKN 117
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
>ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
6-like [Malus domestica]
Length = 656
Score = 343 bits (879), Expect = 2e-91
Identities = 187/351 (53%), Positives = 230/351 (65%), Gaps = 8/351 (2%)
Frame = -3
Query: 1097 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 918
MDP+GEEQ+DY D+EYGG KLQ+QGSGAI ALADEE + EDDE+DDLYNDVNVG+GFMQ
Sbjct: 1 MDPLGEEQIDYEDEEYGGAHKLQYQGSGAISALADEEPMVEDDEFDDLYNDVNVGEGFMQ 60
Query: 917 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 738
HR+EA +P GGVGNGG Q+++ D P +V + IPGV V K S G F
Sbjct: 61 M--HRSEASLPTGGVGNGGLQAQKTDVPEPRVQAGVSQDLKIPGVSVQGKYSGAGAQFPE 118
Query: 737 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 564
+Q AK E G+ +Y GAS QK ++M QV ++ F+GS MPP +G D
Sbjct: 119 QNQPPV----AKEPELGSTDYVSGASGSQKGRVMEMTHDPQVRHMAFQGSTTMPPNVGVD 174
Query: 563 SGQMQVKFXXXXXXXXXXXXXGARNGPP----MLANPMGTA--ANQPMVNENAGRPILDS 402
S + K A GPP +L N M AN+PMVNEN RP +++
Sbjct: 175 SSDITGK----GNSEFVPSLNPASAGPPGATQILTNQMSIKINANRPMVNENQIRPPIEN 230
Query: 401 GPTMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXAC 222
G LFVGELHWWTTDAE+E+V+SQYGRVKEIKF+DERASGKSKGYC VEF+D AC
Sbjct: 231 GSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASGKSKGYCQVEFHDQAAATAC 290
Query: 221 KDSMNGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
K+ M+G+ FNGRACV A+ASPQT++QMGASY++K+ RPMND
Sbjct: 291 KEGMDGYVFNGRACVXAYASPQTLKQMGASYLSKSQGQAQAQQPGRRPMND 341
>ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
6-like [Jatropha curcas] gi|802723892|ref|XP_012085552.1|
PREDICTED: cleavage and polyadenylation specificity
factor subunit 6-like [Jatropha curcas]
gi|802723894|ref|XP_012085553.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit 6-like
[Jatropha curcas] gi|643714049|gb|KDP26714.1|
hypothetical protein JCGZ_17872 [Jatropha curcas]
Length = 656
Score = 326 bits (836), Expect = 2e-86
Identities = 181/344 (52%), Positives = 222/344 (64%), Gaps = 4/344 (1%)
Frame = -3
Query: 1088 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 909
M +EQ+DY D+EYGG QK+Q+QGSGAIPALA+EE+ GEDDEYDDLYNDVNVG+ F+Q
Sbjct: 1 MADEQIDYEDEEYGGNQKMQYQGSGAIPALAEEEM-GEDDEYDDLYNDVNVGENFLQM-- 57
Query: 908 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 729
H+++ P P VG+GGFQ++ ++ SKV + IP V V+ K S+ G F +
Sbjct: 58 HQSQVPPPPTSVGSGGFQTQNVN--ESKVETGGSQGLKIPEVAVEGKYSDPGTHFP---E 112
Query: 728 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 555
+ KG E G+ Y DG+S QK ++M Q NIGF GS+ +P IG D
Sbjct: 113 PKDVPMGVKGPEMGSVAYSDGSSIAQKGRVMEMTHDAQARNIGFHGSSSVPSNIGVDPSD 172
Query: 554 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTMLFV 381
M K G R P + N + N+P VNEN RP +++G T+LFV
Sbjct: 173 MSRKTANEPAPVPNTAATGPRGMPQLPGNQISINMDVNRPTVNENQIRPPVENGSTVLFV 232
Query: 380 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGH 201
GELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKG+C VEFYD ACK+ MNGH
Sbjct: 233 GELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGH 292
Query: 200 AFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
FNGR CVVAFASPQT++QMGASYMNK RPMND
Sbjct: 293 VFNGRPCVVAFASPQTLKQMGASYMNKTQGQSQTQNQGRRPMND 336
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein, putative
[Ricinus communis]
Length = 644
Score = 325 bits (834), Expect = 4e-86
Identities = 183/342 (53%), Positives = 215/342 (62%), Gaps = 2/342 (0%)
Frame = -3
Query: 1088 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 909
M +EQ+DY D+EYGG QKLQ+QGSGAIPALA+EE+ GEDDEYDDLYNDVN+G+ F+Q
Sbjct: 1 MADEQIDYEDEEYGGAQKLQYQGSGAIPALAEEEM-GEDDEYDDLYNDVNIGENFLQM-- 57
Query: 908 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 729
HR+EAP VGNGGFQ + + +V + +IPGV V+SK S G F
Sbjct: 58 HRSEAPPAPPSVGNGGFQPRNSN--DLRVESGGSQGLNIPGVAVESKYST-GTHFPE--- 111
Query: 728 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 555
+ KG E G+ YPDG+S QK ++M +Q N+GF+GS P IG D
Sbjct: 112 -----QNVKGPEIGSVGYPDGSSIAQKTRVMEMTNDSQARNMGFQGSTSGPSNIGVDPSD 166
Query: 554 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLFVGE 375
M K P M N+ NEN RP L++G TML+VGE
Sbjct: 167 MNNKISNDPTPVPNAGVPRVIPQLPASQMNMNMDTNRSATNENQIRPPLENGSTMLYVGE 226
Query: 374 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGHAF 195
LHWWTTDAELENVLSQYG VKEIKF+DERASGKSKGYC VEFYD ACK+ MNGH F
Sbjct: 227 LHWWTTDAELENVLSQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAAACKEGMNGHLF 286
Query: 194 NGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 69
NGRACVVAFAS QT++QMGASYMNKN RPMND
Sbjct: 287 NGRACVVAFASQQTLKQMGASYMNKNQGQPQSQNQGRRPMND 328
>ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Gossypium raimondii]
gi|823252908|ref|XP_012459071.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185
[Gossypium raimondii] gi|763811133|gb|KJB78035.1|
hypothetical protein B456_012G173800 [Gossypium
raimondii]
Length = 648
Score = 324 bits (831), Expect = 8e-86
Identities = 172/326 (52%), Positives = 212/326 (65%), Gaps = 2/326 (0%)
Frame = -3
Query: 1088 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 909
M EEQ+D+GD+EYGG QK Q+QGSG IPALAD E+IGEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MAEEQIDFGDEEYGGVQKTQYQGSGTIPALADVEMIGEDDEYDDLYNDVNVGEGFLQLQ- 59
Query: 908 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 729
R+E P+ G G G Q+ + + P + + +I G+ V K NV + D
Sbjct: 60 -RSEPPVQ-PGTGGTGLQAHKNEAPEPRGEAGGSQGPNISGISVQGKYPNVSAGYREADV 117
Query: 728 KRTNFSSAKGVEGGAGNYPDGA--SQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 555
+ T E G+GNYP G+ SQ ++ QV+N+GF+G K+GT
Sbjct: 118 QPT----VNRPEIGSGNYPSGSASSQGGSVMETNFDTQVKNMGFQGLTSASSKVGTGPSV 173
Query: 554 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLFVGE 375
+ K G + + N MG N PM+NEN RP +++GPTMLFVGE
Sbjct: 174 VPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGE 233
Query: 374 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGHAF 195
LHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ MNG+ F
Sbjct: 234 LHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMF 293
Query: 194 NGRACVVAFASPQTVRQMGASYMNKN 117
NGRACVVAFASPQT++QMGASYMNK+
Sbjct: 294 NGRACVVAFASPQTLKQMGASYMNKD 319
>gb|KHG22501.1| Cleavage and polyadenylation specificity factor subunit [Gossypium
arboreum]
Length = 648
Score = 323 bits (827), Expect = 2e-85
Identities = 171/326 (52%), Positives = 213/326 (65%), Gaps = 2/326 (0%)
Frame = -3
Query: 1088 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 909
M EEQ+D+GD+EYGG QK Q+QGSG IPALAD E+IGEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MAEEQIDFGDEEYGGVQKTQYQGSGTIPALADVEMIGEDDEYDDLYNDVNVGEGFLQLQ- 59
Query: 908 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 729
R+E P+ G G+ G Q+ + + P + + +I G+ V K NV + D
Sbjct: 60 -RSEPPVQ-PGTGSIGLQAHKNEAPEPRGEAGGSQGPNISGISVQGKYPNVSAGYREADV 117
Query: 728 KRTNFSSAKGVEGGAGNYPDGA--SQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 555
+ + E G+GNYP G+ SQ ++ QV+N+GF+G K+GT
Sbjct: 118 Q----PAVNRPEIGSGNYPSGSASSQGGSVMETNFDTQVKNMGFQGLTSASSKVGTGPSV 173
Query: 554 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLFVGE 375
+ K G + + N MG N PM+NEN RP +++GPTMLFVGE
Sbjct: 174 VPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGE 233
Query: 374 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGHAF 195
LHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ MNG+ F
Sbjct: 234 LHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMF 293
Query: 194 NGRACVVAFASPQTVRQMGASYMNKN 117
NGRACVVAFASPQT++QMGASYMNK+
Sbjct: 294 NGRACVVAFASPQTLKQMGASYMNKD 319