BLASTX nr result
ID: Cinnamomum24_contig00003893
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00003893
(1291 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKJ26303.1| chloroplast heterodimeric geranylgeranyl pyrophos... 211 1e-51
ref|XP_012070840.1| PREDICTED: heterodimeric geranylgeranyl pyro... 207 1e-50
ref|XP_002322072.2| hypothetical protein POPTR_0015s04050g [Popu... 202 3e-49
ref|XP_007020796.1| Geranyl-diphosphate synthase, putative [Theo... 196 2e-47
ref|XP_004491403.1| PREDICTED: heterodimeric geranylgeranyl pyro... 196 3e-47
gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa] 195 6e-47
ref|XP_011007747.1| PREDICTED: heterodimeric geranylgeranyl pyro... 195 7e-47
ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, puta... 192 5e-46
dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis] 192 6e-46
ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medic... 188 9e-45
ref|XP_012460748.1| PREDICTED: heterodimeric geranylgeranyl pyro... 187 1e-44
gb|AFK47692.1| unknown [Medicago truncatula] 186 3e-44
ref|XP_010089993.1| Heterodimeric geranylgeranyl pyrophosphate s... 186 4e-44
pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Syn... 185 7e-44
gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antir... 185 7e-44
ref|XP_007142291.1| hypothetical protein PHAVU_008G268100g [Phas... 184 2e-43
ref|NP_001238613.1| geranyl-diphosphate synthase [Glycine max] g... 184 2e-43
ref|XP_010089991.1| Heterodimeric geranylgeranyl pyrophosphate s... 182 5e-43
ref|XP_010276119.1| PREDICTED: heterodimeric geranylgeranyl pyro... 182 5e-43
ref|XP_010060334.1| PREDICTED: heterodimeric geranylgeranyl pyro... 180 2e-42
>gb|AKJ26303.1| chloroplast heterodimeric geranylgeranyl pyrophosphate synthase small
subunit [Paeonia lactiflora]
Length = 298
Score = 211 bits (537), Expect = 1e-51
Identities = 126/264 (47%), Positives = 161/264 (60%), Gaps = 11/264 (4%)
Frame = -2
Query: 1125 NPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERK 946
N + +TI +D++A LKQA+P+R PL V PMH L F+APK APALC A CELVGG R
Sbjct: 40 NSSYWATIDSDIEAHLKQAIPVRPPLVVFEPMHHLTFAAPKNTAPALCIATCELVGGHRD 99
Query: 945 DGVDVASALNLMLAASYTHQYLPNLLQRPNSPS---------FPHNIELLTGDGIYPLGF 793
+ ASAL+L+ AA++TH++LP L RP S F NIELLTGDGI+P G+
Sbjct: 100 QAIAAASALHLIHAAAFTHEHLP-LTDRPTPISSRPGLIHHAFNPNIELLTGDGIHPFGY 158
Query: 792 ELLANPDGVGGD-AERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCVLMRMCER 616
ELLA D GD ++R LRVI+E+ RA G QG ++ QY E GD V + +CE+
Sbjct: 159 ELLARSDDPSGDNSDRVLRVIIEITRATGSQGYIDGQYR-------ETLGD-VAVNVCEK 210
Query: 615 GEGSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQ-RLRS 439
EGS+Y E+++EKLR+YGFYVGMI G+L V LR
Sbjct: 211 KEGSLYGCAAACGAILGGGSEEEIEKLRKYGFYVGMIQGMLYGVGRNTKGSMDVVIGLRD 270
Query: 438 LALKELEGFDAEKVGAISSLVDAD 367
LALKEL+ FD KV IS LV+A+
Sbjct: 271 LALKELKYFDQAKVEKISGLVEAN 294
>ref|XP_012070840.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
subunit, chloroplastic-like [Jatropha curcas]
gi|643731949|gb|KDP39141.1| hypothetical protein
JCGZ_00898 [Jatropha curcas]
Length = 313
Score = 207 bits (527), Expect = 1e-50
Identities = 120/267 (44%), Positives = 169/267 (63%), Gaps = 11/267 (4%)
Frame = -2
Query: 1140 TTTYSNPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELV 961
T+ ++ + ++I AD+D LKQA+PIR PL V PMH L F+AP+T APALC AACELV
Sbjct: 40 TSNKNHQSYWTSINADIDTHLKQAIPIRPPLVVFEPMHHLTFAAPETTAPALCMAACELV 99
Query: 960 GGERKDGVDVASALNLMLAASYTHQYLPNLLQRPNS---PSFPH----NIELLTGDGIYP 802
GG+R V ASAL+L+ A+++TH+ +P + RP S P F H NIELLTGDG+ P
Sbjct: 100 GGQRDQAVAAASALHLLHASAFTHENIP-VTDRPRSSSRPVFDHAYEPNIELLTGDGMTP 158
Query: 801 LGFELLANPDGVG-GDAERALRVILEVARAMGGQGLVEAQYMKVKW--AKGELDGDCV-L 634
FELLA D + DA+R LRVI+E++RA+G QG+VE QY ++++ + G+ + L
Sbjct: 159 FAFELLARFDNLAQNDADRVLRVIIEISRAVGSQGVVEGQYNELRYDESNGKKSFNAAWL 218
Query: 633 MRMCERGEGSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXV 454
+C + +G +++ E+++EKLRRYG YVGMI G+ V
Sbjct: 219 DNVCRKKDGELHACAAACGAILGGGSEEEMEKLRRYGLYVGMIEGIFNRGERNEKWLQKV 278
Query: 453 QRLRSLALKELEGFDAEKVGAISSLVD 373
L++LALKEL+ F+ EKV I SLV+
Sbjct: 279 NELKNLALKELKDFNQEKVKKIFSLVE 305
>ref|XP_002322072.2| hypothetical protein POPTR_0015s04050g [Populus trichocarpa]
gi|550321901|gb|EEF06199.2| hypothetical protein
POPTR_0015s04050g [Populus trichocarpa]
Length = 312
Score = 202 bits (515), Expect = 3e-49
Identities = 119/264 (45%), Positives = 161/264 (60%), Gaps = 5/264 (1%)
Frame = -2
Query: 1137 TTYSNPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVG 958
TTY N + +++ ++DA LKQA+PIR PL V PMH L F+AP+T APALC AACELVG
Sbjct: 46 TTY-NKSYWTSVNDEIDAHLKQAIPIRPPLSVFEPMHHLTFAAPRTTAPALCIAACELVG 104
Query: 957 GERKDGVDVASALNLMLAASYTHQYLPNLLQRPN-SPSFPHNIELLTGDGIYPLGFELLA 781
G R + ASAL LM AA+ TH+++ + R SF NIELLTGDG+ P G ELLA
Sbjct: 105 GNRDQAMAAASALRLMHAAALTHEHILSTGNRARIGHSFGSNIELLTGDGMVPFGLELLA 164
Query: 780 NPDGV-GGDAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCVLMRMCERGEGS 604
D + ++ER LRVI+E+ +AMG QG+ QY + + + + + +C++ EG
Sbjct: 165 KSDDLTQNNSERILRVIIEITQAMGSQGMALGQYNQFQHGQSD-----YIDHVCKKKEGE 219
Query: 603 VYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQ---RLRSLA 433
++S E+++EKLRRYG YVG++ G+L + L +LA
Sbjct: 220 LHSCAGAVGAILGGGTEEEIEKLRRYGLYVGLMQGVLSNWVERKEEVSMEKVLNELENLA 279
Query: 432 LKELEGFDAEKVGAISSLVDADAS 361
LKELEGFD KV AISSLV A +S
Sbjct: 280 LKELEGFDRGKVQAISSLVQAISS 303
>ref|XP_007020796.1| Geranyl-diphosphate synthase, putative [Theobroma cacao]
gi|508720424|gb|EOY12321.1| Geranyl-diphosphate synthase,
putative [Theobroma cacao]
Length = 300
Score = 196 bits (499), Expect = 2e-47
Identities = 118/301 (39%), Positives = 169/301 (56%), Gaps = 9/301 (2%)
Frame = -2
Query: 1242 MAAILTHFTSNPIRXXXXXXXXXXXXXXXKTLQVTTTYSNPTNCSTIKADVDARLKQALP 1063
MA L+H NP+ T+ +Y ++I AD++A LKQA+P
Sbjct: 1 MARALSHINGNPLLQVPCRPNPMPYKPMMVTMSCNQSY-----WASINADIEAHLKQAIP 55
Query: 1062 IRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDVASALNLMLAASYTHQY 883
+R+PL V +PMH L F+ PK APALC AACELVGG R + ASAL+LM AAS+TH+
Sbjct: 56 VREPLSVSQPMHHLTFACPKNTAPALCVAACELVGGHRDQALPAASALHLMYAASFTHEQ 115
Query: 882 LP-NLLQRPNSP---SFPHNIELLTGDGIYPLGFELLA-NPDGVGGDAERALRVILEVAR 718
LP RP S ++ NIELL GD + P G ELLA + D D+ER LRV++E+ R
Sbjct: 116 LPLTQSSRPRSTIQHAYGPNIELLIGDAMIPSGLELLARSDDPAHTDSERVLRVMVEITR 175
Query: 717 AMGGQGLVEAQYMKVKWAKG---ELDGDCVLMRMCERGEGSVYSXXXXXXXXXXXXCEDD 547
A G QG++ QY +V+ + E + R+ E+ EG++++ E++
Sbjct: 176 ATGSQGMIHGQYYEVERCQSGNKEASYMVEIERISEKYEGALHACAAACGAIVGGGSEEE 235
Query: 546 VEKLRRYGFYVGMIHGLL-XXXXXXXXXXXXVQRLRSLALKELEGFDAEKVGAISSLVDA 370
+EK+RRYG Y+G I G+L V+ LR+LA +EL+GF K+ AISS ++
Sbjct: 236 IEKMRRYGLYIGKIQGMLNRIRSHDQELNKLVEELRNLASRELQGFYEAKIAAISSCFES 295
Query: 369 D 367
+
Sbjct: 296 N 296
>ref|XP_004491403.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
subunit, chloroplastic-like [Cicer arietinum]
Length = 302
Score = 196 bits (498), Expect = 3e-47
Identities = 115/267 (43%), Positives = 165/267 (61%), Gaps = 8/267 (2%)
Frame = -2
Query: 1149 LQVTTTYSNPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAAC 970
+ +T T+ ++++AD++A LKQ++ I++PL V PMH LVF+APKT PALC AAC
Sbjct: 39 MSMTQTHHTHPYWASLQADIEAHLKQSITIKEPLVVFEPMHHLVFNAPKTTVPALCLAAC 98
Query: 969 ELVGGERKDGVDVASALNLMLAASYTHQYLPNLLQRPN-SPSFPH----NIELLTGDGIY 805
ELVGG+R + ASAL LM AA+YTH++L L RP P H N+ELLTGDGI
Sbjct: 99 ELVGGQRNQAISAASALLLMEAATYTHEHL-LLSDRPKPKPVITHAYGPNVELLTGDGIV 157
Query: 804 PLGFELLANPDGVGGDAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDC---VL 634
P GFELLA +G G ++ER LRV++E++RA+G G+++AQY K + + D C +
Sbjct: 158 PFGFELLARSNG-GENSERILRVMVEISRAVGSGGVIDAQYRKTMDSGSDGDEMCHVEGI 216
Query: 633 MRMCERGEGSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXV 454
R+ E+ EG +++ E+++E+LR YGFYVGMI G+L V
Sbjct: 217 RRVVEKYEGELHACGAVCGGVLGGGSEEEIERLRNYGFYVGMIQGML--QRGFKDDNKEV 274
Query: 453 QRLRSLALKELEGFDAEKVGAISSLVD 373
+ R AL EL+ F +V AIS+ ++
Sbjct: 275 EETRKFALHELQFFKDREVDAISTFLN 301
>gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa]
Length = 301
Score = 195 bits (496), Expect = 6e-47
Identities = 115/259 (44%), Positives = 167/259 (64%), Gaps = 13/259 (5%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
+++ ADV+A LKQ + I++PL V PMH L+F+APKT PALC AACELVGG+R++ +
Sbjct: 48 ASLHADVEAHLKQTITIKEPLLVFEPMHHLIFTAPKTTVPALCLAACELVGGQRQEAISA 107
Query: 930 ASALNLMLAASYTHQYLPNLLQRPN---SPSFPH----NIELLTGDGIYPLGFELLANPD 772
ASAL LM AA+YTH++LP L RP P H N+ELLTGDGI P GFELLA D
Sbjct: 108 ASALLLMEAATYTHEHLP-LSDRPGPKPGPMIDHVYGPNVELLTGDGIVPFGFELLARSD 166
Query: 771 GVGGDAERALRVILEVARAMG-GQGLVEAQYMKVKWAKGELDGDCV-----LMRMCERGE 610
G G ++ER L+V++E++RA+G G G+++AQYMK G DGD + + R+ E+ E
Sbjct: 167 G-GENSERILKVMVEISRAVGSGGGVIDAQYMKT--LGGGSDGDEICHVEEIRRVVEKYE 223
Query: 609 GSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLAL 430
G ++S CE+++E+LR++GFYVG+I G++ R+LA+
Sbjct: 224 GRLHSCGAVCGGVLGGGCEEEIERLRKFGFYVGIIQGMIKWGFKEDHKEVV--EARNLAI 281
Query: 429 KELEGFDAEKVGAISSLVD 373
+EL+ F ++V AI + ++
Sbjct: 282 QELKFFKDKEVDAIKTFLN 300
>ref|XP_011007747.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
subunit, chloroplastic-like [Populus euphratica]
Length = 312
Score = 195 bits (495), Expect = 7e-47
Identities = 114/264 (43%), Positives = 160/264 (60%), Gaps = 5/264 (1%)
Frame = -2
Query: 1137 TTYSNPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVG 958
TTY N + +++ ++DA LKQA+PIR PL V PMH L F+AP++ APALC AACELVG
Sbjct: 46 TTY-NKSYWTSVNDEIDAHLKQAIPIRPPLLVFEPMHHLTFAAPRSAAPALCVAACELVG 104
Query: 957 GERKDGVDVASALNLMLAASYTHQYLPNLLQRPN-SPSFPHNIELLTGDGIYPLGFELLA 781
G R + A AL LM AA++TH+++ + R SF NIELLTGDG+ P G ELLA
Sbjct: 105 GNRDQAMAAACALRLMHAAAFTHEHILSTGNRARIGHSFGSNIELLTGDGMLPFGLELLA 164
Query: 780 NPDGV-GGDAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCVLMRMCERGEGS 604
D + ++ER LRVI+E+ +AMG QG+ QY + ++ + + + +C++ EG
Sbjct: 165 KSDDLTQNNSERILRVIVEITQAMGSQGMALGQYNQFQYGQSD-----YIDHVCKKKEGE 219
Query: 603 VYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQ---RLRSLA 433
++S E+++EKLRRYG YVG++ G+L + L +LA
Sbjct: 220 LHSCAGAVGAILGGGTEEEIEKLRRYGLYVGLMQGVLSNWVERKEVVSMEKVLNELENLA 279
Query: 432 LKELEGFDAEKVGAISSLVDADAS 361
+KELEGFD V ISSLV A +S
Sbjct: 280 VKELEGFDEGIVQTISSLVQAISS 303
>ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
gi|223527725|gb|EEF29831.1| geranyl geranyl pyrophosphate
synthase, putative [Ricinus communis]
Length = 308
Score = 192 bits (488), Expect = 5e-46
Identities = 116/257 (45%), Positives = 158/257 (61%), Gaps = 13/257 (5%)
Frame = -2
Query: 1104 IKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDVAS 925
I AD++ LK+A+P+R P+ V PMH L F+AP++ APALC AACELVGG R + AS
Sbjct: 52 INADIETHLKEAIPVRPPVVVFEPMHHLTFAAPRSFAPALCIAACELVGGSRDQALAAAS 111
Query: 924 ALNLMLAASYTHQYLPNLLQRPN---SPSFPH----NIELLTGDGIYPLGFELLANPDGV 766
AL LM+AA++TH+ +P L RP P F H NIELLTGDG+ P FELLA +
Sbjct: 112 ALRLMIAAAFTHENIP-LTDRPRPSARPMFHHTFGPNIELLTGDGMIPFAFELLAQLNNP 170
Query: 765 GGD-AERALRVILEVARAMGGQGLVEAQYMKVKWAKG---ELDGDCVLMRMCERGEGSVY 598
D ++R LRV++E++RAMG QG+VE QY + ++ + EL L +C++ EG+ +
Sbjct: 171 AQDNSDRILRVMIEISRAMGSQGMVEGQYNEFQYDQSVGDELFHVAWLRDVCKKKEGASH 230
Query: 597 SXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLL-XXXXXXXXXXXXVQRLRSLALKEL 421
+ E+++EKLRRYG YVG I G+ V +LR LALKEL
Sbjct: 231 ACAGACGAILGGGNEEEIEKLRRYGLYVGTIQGIYNKVEGNEEWSLKEVNKLRDLALKEL 290
Query: 420 EGF-DAEKVGAISSLVD 373
+ F + EKV AI SLV+
Sbjct: 291 KDFNEEEKVRAICSLVE 307
>dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
Length = 306
Score = 192 bits (487), Expect = 6e-46
Identities = 113/258 (43%), Positives = 154/258 (59%), Gaps = 12/258 (4%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
S++ AD+D LKQA+PIR PL V PM L+ SAP+T APALC AACELVGG R +
Sbjct: 45 SSVNADLDTHLKQAIPIRQPLAVFEPMRHLILSAPQTSAPALCIAACELVGGHRNQAMAA 104
Query: 930 ASALNLMLAASYTHQYL-----PNLLQRPNSPSFPHNIELLTGDGIYPLGFELLA-NPDG 769
ASAL L+ A++ TH+ L P + R + NIELL DGI P GFELLA + D
Sbjct: 105 ASALRLVHASASTHENLPLTDRPRPMPRTRPTLYGPNIELLIADGIIPYGFELLARDDDA 164
Query: 768 VGGDAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCV-----LMRMCERGEGS 604
++ R LR I+E++RAMG QG++E QY + ++ + E G+ + L +C + EG+
Sbjct: 165 AENNSNRVLRAIIEISRAMGSQGVIEGQYNESQYEESE--GEEIFHVGWLQNVCRKKEGT 222
Query: 603 VYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLL-XXXXXXXXXXXXVQRLRSLALK 427
+++ ED++EKLRRYG YVGM+ G+L V +LR LALK
Sbjct: 223 LHACAGACGAILGGGSEDEIEKLRRYGLYVGMVQGILSKVDERKEWPVKEVNKLRDLALK 282
Query: 426 ELEGFDAEKVGAISSLVD 373
EL+ F+ KV IS LV+
Sbjct: 283 ELKDFNQAKVKTISILVE 300
>ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
gi|355518891|gb|AET00515.1| geranylgeranyl pyrophosphate
synthase [Medicago truncatula]
Length = 297
Score = 188 bits (477), Expect = 9e-45
Identities = 107/254 (42%), Positives = 163/254 (64%), Gaps = 8/254 (3%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
+++ AD++A LKQ + I++PL V PMH L+F+APKT PALC A CELVGG+R +
Sbjct: 48 ASLHADIEAHLKQTITIKEPLVVFEPMHHLIFTAPKTTVPALCLATCELVGGQRHQAISA 107
Query: 930 ASALNLMLAASYTHQYLPNLLQRPNSPSFPH----NIELLTGDGIYPLGFELLANPDGVG 763
ASAL LM AA+YTH++LP L RP P H N+ELLTGDGI P GFELLA DG G
Sbjct: 108 ASALLLMEAATYTHEHLP-LTDRPR-PMINHVYGPNMELLTGDGIVPFGFELLARSDG-G 164
Query: 762 GDAERALRVILEVARAMG-GQGLVEAQYMKVKWAKGELDGDC---VLMRMCERGEGSVYS 595
++ER L+V++E++RA+G G G+++AQY K+ ++ + + C + + E+ EG ++S
Sbjct: 165 ENSERILKVMVEISRAVGSGGGVIDAQYGKILYSGSDGEEKCHVEEIRHVVEKYEGRLHS 224
Query: 594 XXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLALKELEG 415
CE+++E+LR++G+YVG+I G++ R+LA++EL+
Sbjct: 225 CGAVCGGVLGGGCEEEIERLRKFGYYVGIIQGMIKWGFKEDHKEVV--EARNLAIQELKF 282
Query: 414 FDAEKVGAISSLVD 373
F ++V AI + ++
Sbjct: 283 FKDKEVDAIKTFLN 296
>ref|XP_012460748.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
subunit, chloroplastic-like [Gossypium raimondii]
gi|763746254|gb|KJB13693.1| hypothetical protein
B456_002G089600 [Gossypium raimondii]
Length = 296
Score = 187 bits (476), Expect = 1e-44
Identities = 121/302 (40%), Positives = 165/302 (54%), Gaps = 11/302 (3%)
Frame = -2
Query: 1242 MAAILTHFTSNPIRXXXXXXXXXXXXXXXKTLQV--TTTYSNPTNCSTIKADVDARLKQA 1069
MA L+H NPI ++ T SN + ++I AD++A LKQA
Sbjct: 1 MARALSHIHGNPIFHVPYTPIPTRQCPSNLPCRLFKVTMSSNQSYWTSINADIEAHLKQA 60
Query: 1068 LPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDVASALNLMLAASYTH 889
+P+R+PL V PM+ L FSAP++ APALC AACELVGG R + ASAL LM AAS+ H
Sbjct: 61 IPVREPLSVFEPMNHLTFSAPRSTAPALCVAACELVGGHRDQALPAASALQLMYAASFAH 120
Query: 888 QYLPNLLQ--RPNSP---SFPHNIELLTGDGIYPLGFELLA-NPDGVGGDAERALRVILE 727
++LP L Q RP S + NIELL GD + P G ELLA + D +++R LRV++E
Sbjct: 121 EHLP-LTQSCRPKSEIQHLYGPNIELLIGDAMIPFGLELLAVSNDSTQKNSDRVLRVMVE 179
Query: 726 VARAMGGQGLVEAQYMKVKWAKGELDGDCVLM--RMCERGEGSVYSXXXXXXXXXXXXCE 553
+ RA+G QG+V QY +V E + C+ R E+ EG+++ E
Sbjct: 180 ITRAIGSQGMVHGQYYEV-----EYESSCIRQNERASEKYEGTLHGCAAACGAILGGGSE 234
Query: 552 DDVEKLRRYGFYVGMIHGLL-XXXXXXXXXXXXVQRLRSLALKELEGFDAEKVGAISSLV 376
++EK+RRYG Y+G I G++ V+ R LA EL GF+ KV AIS L
Sbjct: 235 VEIEKMRRYGVYIGKIQGMIRRDERKSKDLKELVEETRKLATNELSGFNEAKVEAISKLF 294
Query: 375 DA 370
A
Sbjct: 295 GA 296
>gb|AFK47692.1| unknown [Medicago truncatula]
Length = 297
Score = 186 bits (473), Expect = 3e-44
Identities = 106/254 (41%), Positives = 162/254 (63%), Gaps = 8/254 (3%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
+++ AD++A LKQ + I++PL V PMH L+F+APKT PALC A CE VGG+R +
Sbjct: 48 ASLHADIEAHLKQTITIKEPLVVFEPMHHLIFTAPKTTVPALCLATCEFVGGQRHQAISA 107
Query: 930 ASALNLMLAASYTHQYLPNLLQRPNSPSFPH----NIELLTGDGIYPLGFELLANPDGVG 763
ASAL LM AA+YTH++LP L RP P H N+ELLTGDGI P GFELLA DG G
Sbjct: 108 ASALLLMEAATYTHEHLP-LTDRPR-PMINHVYGPNMELLTGDGIVPFGFELLARSDG-G 164
Query: 762 GDAERALRVILEVARAMG-GQGLVEAQYMKVKWAKGELDGDC---VLMRMCERGEGSVYS 595
++ER L+V++E++RA+G G G+++AQY K+ ++ + + C + + E+ EG ++S
Sbjct: 165 ENSERILKVMVEISRAVGSGGGVIDAQYGKILYSGSDGEEKCHVEEIRHVVEKYEGRLHS 224
Query: 594 XXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLALKELEG 415
CE+++E+LR++G+YVG+I G++ R+LA++EL+
Sbjct: 225 CGAVCGGVLGGGCEEEIERLRKFGYYVGIIQGMIKWGFKEDHKEVV--EARNLAIQELKF 282
Query: 414 FDAEKVGAISSLVD 373
F ++V AI + ++
Sbjct: 283 FKDKEVDAIKTFLN 296
>ref|XP_010089993.1| Heterodimeric geranylgeranyl pyrophosphate synthase small subunit
[Morus notabilis] gi|587848457|gb|EXB38724.1|
Heterodimeric geranylgeranyl pyrophosphate synthase small
subunit [Morus notabilis]
Length = 306
Score = 186 bits (471), Expect = 4e-44
Identities = 114/270 (42%), Positives = 157/270 (58%), Gaps = 13/270 (4%)
Frame = -2
Query: 1146 QVTTTYSNPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACE 967
++TT+ + ++I AD++A LKQA+P++ PL V+ PMH + FSAP APALC AACE
Sbjct: 35 KMTTSQDQSSYRASITADIEAHLKQAIPLKSPLSVYAPMHHMTFSAPPNPAPALCVAACE 94
Query: 966 LVGGERKDGVDVASALNLMLAASYTHQYLPNLLQRPN-----SPSFPH----NIELLTGD 814
LVGG+R + ASAL+LM AAS+TH++LP L RP P+ H NIELL D
Sbjct: 95 LVGGDRSKAMAAASALHLMHAASFTHEHLP-LTDRPKPKPKPKPTVDHPFNPNIELLIPD 153
Query: 813 GIYPLGFELLANPDGVGGDAE-RALRVILEVARAMGGQGLVEAQYMKVKWAK---GELDG 646
+ P +EL A D D R LRVI+E+AR MG QG+V+AQY +V + EL+
Sbjct: 154 AMVPFAYELSAVSDDPTQDTSGRVLRVIVELARVMGSQGIVDAQYREVLVSPLDGRELND 213
Query: 645 DCVLMRMCERGEGSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXX 466
+ MC R EG +++ E++VE+LR+YG YVG++ G
Sbjct: 214 IEWVDDMCRRKEGRLHACAAACGAILGGANEEEVERLRKYGLYVGIMQGYTNRLGRRVKE 273
Query: 465 XXXVQRLRSLALKELEGFDAEKVGAISSLV 376
V LR+LA+KEL+ F KV ISS +
Sbjct: 274 LERVVELRNLAMKELDHFKGRKVEEISSFI 303
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus gi|323463188|pdb|3QKC|A
Chain A, Crystal Structure Of Geranyl Diphosphate
Synthase Small Subunit From Antirrhinum Majus
Length = 273
Score = 185 bits (469), Expect = 7e-44
Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 6/256 (2%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
+TI++D+++ LK+A+PIR P V PMH L F+AP+T A ALC AACELVGG+R D +
Sbjct: 11 ATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAA 70
Query: 930 ASALNLMLAASYTHQYLPNLLQRPNSPS-----FPHNIELLTGDGIYPLGFELLA-NPDG 769
A+A++LM A+YTH+ LP L P S S F NIELLTGDGI P G EL+A + D
Sbjct: 71 AAAVHLMHVAAYTHENLP-LTDGPMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDP 129
Query: 768 VGGDAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCVLMRMCERGEGSVYSXX 589
+ +R LR I+E+ R MG +G+VE QY ++ +L+ ++ +C++ EG++++
Sbjct: 130 TRNNPDRILRAIIELTRVMGSEGIVEGQYHEL--GLNQLNDLELIEYVCKKKEGTLHACG 187
Query: 588 XXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLALKELEGFD 409
ED +EKLRR+G YVG + GLL ++ L+ LA+KELE F
Sbjct: 188 AACGAILGGCDEDKIEKLRRFGLYVGTVQGLL--GKNRSGFEGRIKELKELAVKELESFG 245
Query: 408 AEKVGAISSLVDADAS 361
EK+ I + + + S
Sbjct: 246 GEKIELIRGVFELEHS 261
>gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antirrhinum majus]
Length = 297
Score = 185 bits (469), Expect = 7e-44
Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 6/256 (2%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
+TI++D+++ LK+A+PIR P V PMH L F+AP+T A ALC AACELVGG+R D +
Sbjct: 43 ATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAA 102
Query: 930 ASALNLMLAASYTHQYLPNLLQRPNSPS-----FPHNIELLTGDGIYPLGFELLA-NPDG 769
A+A++LM A+YTH+ LP L P S S F NIELLTGDGI P G EL+A + D
Sbjct: 103 AAAVHLMHVAAYTHENLP-LTDGPMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDP 161
Query: 768 VGGDAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCVLMRMCERGEGSVYSXX 589
+ +R LR I+E+ R MG +G+VE QY ++ +L+ ++ +C++ EG++++
Sbjct: 162 TRNNPDRILRAIIELTRVMGSEGIVEGQYHEL--GLNQLNDLELIEYVCKKKEGTLHACG 219
Query: 588 XXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLALKELEGFD 409
ED +EKLRR+G YVG + GLL ++ L+ LA+KELE F
Sbjct: 220 AACGAILGGCDEDKIEKLRRFGLYVGTVQGLL--GKNRSGFEGRIKELKELAVKELESFG 277
Query: 408 AEKVGAISSLVDADAS 361
EK+ I + + + S
Sbjct: 278 GEKIELIRGVFELEHS 293
>ref|XP_007142291.1| hypothetical protein PHAVU_008G268100g [Phaseolus vulgaris]
gi|561015424|gb|ESW14285.1| hypothetical protein
PHAVU_008G268100g [Phaseolus vulgaris]
Length = 274
Score = 184 bits (466), Expect = 2e-43
Identities = 102/247 (41%), Positives = 158/247 (63%), Gaps = 1/247 (0%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
++++AD++A LKQ +P+++PL+V+ PMH LVF+AP+T APALC AACELVGG+R+ +D
Sbjct: 42 ASLQADIEAYLKQTIPLKEPLEVYEPMHRLVFAAPRTAAPALCLAACELVGGQRRQAMDA 101
Query: 930 ASALNLMLAASYTHQYLPNLLQRPNSPSFPHNIELLTGDGIYPLGFELLANPDGVG-GDA 754
A+AL L LA ++ H+ + N+ LLTGDGI P GFELLA G G G
Sbjct: 102 AAALLLNLANAHAHEEI--------GQGEGSNVALLTGDGIVPFGFELLARGAGPGSGSP 153
Query: 753 ERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGDCVLMRMCERGEGSVYSXXXXXXX 574
ER +RVI+E++RA+G GL+++ +MK K +GE++ + R+ E+GEG +++
Sbjct: 154 ERVMRVIIEISRAVGSGGLIDSLHMK-KTVEGEVES---VKRVVEKGEGGLHACGAACGA 209
Query: 573 XXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLALKELEGFDAEKVG 394
E+++E+LRR+GF++GM+ G+ V+ R+LALKEL F +G
Sbjct: 210 VVGGGSEEEIERLRRFGFHMGMMRGM----AQRALSKEDVEEHRNLALKELHLFKDTDLG 265
Query: 393 AISSLVD 373
IS+ ++
Sbjct: 266 IISTFLN 272
>ref|NP_001238613.1| geranyl-diphosphate synthase [Glycine max]
gi|166835923|gb|ABY90133.1| geranyl-diphosphate synthase
[Glycine max]
Length = 283
Score = 184 bits (466), Expect = 2e-43
Identities = 108/249 (43%), Positives = 151/249 (60%), Gaps = 4/249 (1%)
Frame = -2
Query: 1110 STIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDV 931
++++AD++A LKQ +P+++PL+V PM L FSAP+T PALC AACELVGG R+ +
Sbjct: 44 ASLQADIEAHLKQTIPLKEPLEVFEPMLHLAFSAPRTTVPALCLAACELVGGHRQQAMAA 103
Query: 930 ASALNLMLAASYTHQYLPNLLQRPNSPSFPHNIELLTGDGIYPLGFELLANPDG-VGGDA 754
ASAL L LA ++ H++L + P + NIELLTGDGI P GFELLA PDG
Sbjct: 104 ASALLLNLANAHAHEHL------TDGPMYGPNIELLTGDGIVPFGFELLARPDGPASASP 157
Query: 753 ERALRVILEVARAMGGQGLVEAQYM-KVKWAKGELDGDCVLMR--MCERGEGSVYSXXXX 583
ER LRV++E++RA+G GL +AQY+ K W GE + M+ + E+ +G +++
Sbjct: 158 ERVLRVMIEISRAVGSVGLQDAQYVKKTLWDGGEEVQNVESMQRFVLEKRDGGLHACGAA 217
Query: 582 XXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXXXXXXXXXVQRLRSLALKELEGFDAE 403
ED +E+LR +GF+VGM+ G+L VQ R LALKEL+ F
Sbjct: 218 SGAILGGGSEDQIERLRNFGFHVGMMRGML----QMGFMEKHVQEERHLALKELQFFMDR 273
Query: 402 KVGAISSLV 376
V ISS +
Sbjct: 274 DVHVISSFI 282
>ref|XP_010089991.1| Heterodimeric geranylgeranyl pyrophosphate synthase small subunit
[Morus notabilis] gi|587848455|gb|EXB38722.1|
Heterodimeric geranylgeranyl pyrophosphate synthase small
subunit [Morus notabilis]
Length = 306
Score = 182 bits (462), Expect = 5e-43
Identities = 113/274 (41%), Positives = 153/274 (55%), Gaps = 18/274 (6%)
Frame = -2
Query: 1143 VTTTYSNPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACEL 964
+T + C++I A+++A LKQA+P++ PL V PMH + FSAP APALC AACEL
Sbjct: 36 ITMCRDQSSYCASITAEIEAHLKQAIPLKPPLTVFEPMHHMTFSAPLNSAPALCVAACEL 95
Query: 963 VGGERKDGVDVASALNLMLAASYTHQ--YLPNLLQ----------RPNSPSFPHNIELLT 820
+GG R + ASAL LMLAAS TH+ ++PN L+ N P F +L+
Sbjct: 96 IGGSRSQAMAAASALYLMLAASVTHEKLHIPNRLKPKPKPAPGVCSANGPMF----DLMF 151
Query: 819 GDGIYPLGFELLANPDGVGGDAE-RALRVILEVARAMGGQGLVEAQYMKVKWAKGELDGD 643
D + P G+ELLA D D R LRVI+E+ARAMG QG++ AQY V +LDG
Sbjct: 152 LDAMVPFGYELLAISDDPDQDTSGRVLRVIVELARAMGSQGIIHAQYQGV--IVSQLDGG 209
Query: 642 C-----VLMRMCERGEGSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLLXXXXX 478
++ MC + EG V++ E+++EKLR+YG YVG+I G
Sbjct: 210 GSNNIELIDDMCRKKEGRVHACAAACGAILGGANEEEIEKLRKYGLYVGIIQGYTNRLGR 269
Query: 477 XXXXXXXVQRLRSLALKELEGFDAEKVGAISSLV 376
V LR+LALKEL+ F +KV ISS +
Sbjct: 270 KVKEIERVVELRNLALKELDHFKGQKVEEISSFI 303
>ref|XP_010276119.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
subunit, chloroplastic-like [Nelumbo nucifera]
Length = 320
Score = 182 bits (462), Expect = 5e-43
Identities = 115/275 (41%), Positives = 160/275 (58%), Gaps = 23/275 (8%)
Frame = -2
Query: 1125 NPTNCSTIKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGER- 949
N + + + ++ +LKQ +P+R PL V+ PMH LVF+A +T+APALC A CELVGG++
Sbjct: 41 NQSYWTCVTQKIEDQLKQLIPVRPPLLVYEPMHHLVFTARRTMAPALCVATCELVGGQQP 100
Query: 948 ---KDGVDVASALNLMLAASYTHQYLPNLLQRP---------NSPSFPHNIELLTGDGIY 805
+ VASAL+L+ AA +TH+ LP L RP + +F +ELLTGDGI
Sbjct: 101 ISPNQALVVASALHLVQAALFTHEQLP-LTDRPIPSNPETLTHHHAFAAGVELLTGDGIL 159
Query: 804 PLGFELLA-NPDGVGGDAERALRVILEVARAMGGQGLVEAQYMKVKWA---KGELDGDCV 637
+ELL + D GG++ER LRVI+E+ARAMG +G+V+ QY K+ + EL
Sbjct: 160 SFVYELLGRSDDPAGGNSERLLRVIIEIARAMGSEGMVDGQYRKMLCSVLGSEELCDVGW 219
Query: 636 LMRMCERGEGSVYSXXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLL------XXXXXX 475
+ +CE+ EG +Y+ E+++EKLR YG YVG IHGL+
Sbjct: 220 VDHVCEKKEGRLYACGAACGAILGGGSEEEIEKLRNYGLYVGKIHGLMLYYHNNRTGGEE 279
Query: 474 XXXXXXVQRLRSLALKELEGFDAEKVGAISSLVDA 370
V+R SLALKELEGF+ V +SSLV A
Sbjct: 280 KGFTDLVERCTSLALKELEGFNQGMVQTLSSLVRA 314
>ref|XP_010060334.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
subunit, chloroplastic-like [Eucalyptus grandis]
gi|629101519|gb|KCW66988.1| hypothetical protein
EUGRSUZ_F00752 [Eucalyptus grandis]
Length = 313
Score = 180 bits (457), Expect = 2e-42
Identities = 102/257 (39%), Positives = 152/257 (59%), Gaps = 13/257 (5%)
Frame = -2
Query: 1104 IKADVDARLKQALPIRDPLDVHRPMHDLVFSAPKTLAPALCTAACELVGGERKDGVDVAS 925
I AD++A LK+A+P+ P V PMH L F+AP++ APALC AACELVGG R + A+
Sbjct: 52 IHADIEAHLKKAIPVNPPPVVLEPMHHLTFAAPRSTAPALCVAACELVGGTRDQAMPAAA 111
Query: 924 ALNLMLAASYTHQYLP----NLLQRPNSPSFPHNIELLTGDGIYPLGFELLA-NPDGVGG 760
AL+++ AA+ H+ LP ++ P + F N+EL+TGDG+ P GFELLA + D GG
Sbjct: 112 ALHIIRAAAVAHENLPLTDRPAIRPPVAHPFGPNVELMTGDGMVPFGFELLAGSGDPAGG 171
Query: 759 DAERALRVILEVARAMGGQGLVEAQYMKVKWAKGELDG-----DCVLMRMCERGEGSVYS 595
++ R LR I+E+ RA+G QG+V QY +V++ + G + + + EG +++
Sbjct: 172 NSGRVLRAIVEITRAVGSQGMVHGQYREVEYLLSRVQGSRDDQEWAADHVWAKKEGDLHA 231
Query: 594 XXXXXXXXXXXXCEDDVEKLRRYGFYVGMIHGLL---XXXXXXXXXXXXVQRLRSLALKE 424
E+++E LRRYGFYVGM+ G+ V+ ++ LA K
Sbjct: 232 CAAACGAILGGGTEEEIEGLRRYGFYVGMVRGMTAHGGGGREDRWSNAVVEDMKKLARKA 291
Query: 423 LEGFDAEKVGAISSLVD 373
L GFDA KV A++S++D
Sbjct: 292 LAGFDAGKVEAVASILD 308