BLASTX nr result
ID: Cinnamomum24_contig00000329
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00000329
(3701 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 1709 0.0
ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polyme... 1707 0.0
ref|XP_009389500.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA... 1647 0.0
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1642 0.0
ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1642 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1642 0.0
ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1636 0.0
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1635 0.0
ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1629 0.0
ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1625 0.0
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1620 0.0
ref|XP_004291459.2| PREDICTED: RNA-dependent RNA polymerase 6 is... 1616 0.0
ref|XP_011459183.1| PREDICTED: RNA-dependent RNA polymerase 6 is... 1616 0.0
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun... 1614 0.0
ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [P... 1614 0.0
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca... 1609 0.0
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1603 0.0
gb|KDO61726.1| hypothetical protein CISIN_1g041430mg [Citrus sin... 1602 0.0
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 1587 0.0
ref|XP_008394093.1| PREDICTED: RNA-dependent RNA polymerase 6 [M... 1582 0.0
>ref|XP_008778879.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
SHL2 [Phoenix dactylifera]
Length = 1198
Score = 1709 bits (4427), Expect = 0.0
Identities = 831/1193 (69%), Positives = 984/1193 (82%), Gaps = 1/1193 (0%)
Frame = -3
Query: 3681 QEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTS 3502
++ KE+VV+Q SFGGFD +VSAKDL +FLE E GL+WRCR+K SWTPPESYPDY V + S
Sbjct: 9 RDQKELVVSQVSFGGFDERVSAKDLTDFLEHEAGLIWRCRVKNSWTPPESYPDYDVLDVS 68
Query: 3501 LVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRR 3322
V R ++Y KVVPHAFVHF A +CEL+++GCPL+AN T+SS R++RRR
Sbjct: 69 DVRRKDDYPKVVPHAFVHFATLDAAKRAINAAGKCELVLQGCPLRANSGTDSSFRISRRR 128
Query: 3321 GTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKST 3142
+PF+F+DV EIGTL +RDEF V WKGP SGVDF++DPFD C+ILFS ETAF+FK
Sbjct: 129 TMDPFRFTDVGVEIGTLASRDEFLVAWKGPKSGVDFLIDPFDGRCRILFSKETAFAFKDI 188
Query: 3141 KRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNL 2962
K +V+KCDFKVEFL R+I E+KL+ ++ PA+L QL+S+PWVYYRTADD+I T PF+L
Sbjct: 189 KEMAVLKCDFKVEFLARDINEVKLFTDQYPPAMLFQLASTPWVYYRTADDDILVTAPFSL 248
Query: 2961 LDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVV 2782
LDDEDPWIRTTDF+ GAI RC +YRIS SPR+G L+ +LAYL++RRI EHRP+R LVV
Sbjct: 249 LDDEDPWIRTTDFTPGGAISRCCSYRISFSPRYGRILKESLAYLKERRIAEHRPKRPLVV 308
Query: 2781 QDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEV 2602
+EP+FG + D FFS+ +KEG+SF I+FLV+AL+H+GIVNQ+QLSE+FF LLR+++ +
Sbjct: 309 LEEPDFGTLMPDPFFSVQHKEGISFSIMFLVDALVHKGIVNQHQLSEEFFALLRSQSDSM 368
Query: 2601 NVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYC 2422
N TAL H+ +YK PIFDA +RLKLVQ+WLLKNPK LKS+++S+D++EVRRLVITPTKAYC
Sbjct: 369 NETALRHIWAYKTPIFDACRRLKLVQDWLLKNPKFLKSSKLSDDSSEVRRLVITPTKAYC 428
Query: 2421 LPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKT 2242
LPP VELSNRVLR YKEV DRFLRVTFMDEGMQ+LN+++L YY A IVK++TS+S PQKT
Sbjct: 429 LPPGVELSNRVLRNYKEVADRFLRVTFMDEGMQKLNNNVLNYYVAPIVKELTSNSFPQKT 488
Query: 2241 TIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFN 2062
T+F+RV+SI DGF+LCGR+YSFLAFSSNQLRD SAWFFA+D T V IR WMG+F
Sbjct: 489 TVFRRVRSILIDGFHLCGRRYSFLAFSSNQLRDRSAWFFAEDSNTSV--EDIRDWMGKFA 546
Query: 2061 IKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQ 1882
K VAKCAARMGQCFSSTYATVDVP QV+P LPDI+R Y+FSDGIGKITP+LA+EVA+
Sbjct: 547 NKNVAKCAARMGQCFSSTYATVDVPPDQVNPLLPDIERKGYIFSDGIGKITPELAMEVAE 606
Query: 1881 KLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQ 1702
KLQLT NPP AYQIRYAG KGVV WPG D G RL LRPSM KF S HT+LEVVSWTRFQ
Sbjct: 607 KLQLTENPPSAYQIRYAGTKGVVAVWPGDDDGIRLSLRPSMNKFESSHTMLEVVSWTRFQ 666
Query: 1701 PGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAI 1522
PGFLNRQI+TLLS+L VPD VF MQ+SM+ KLNQ+L +TDVAF+VLT+SC+EQGN+AAI
Sbjct: 667 PGFLNRQIVTLLSSLNVPDSVFASMQDSMIYKLNQMLVDTDVAFDVLTSSCAEQGNTAAI 726
Query: 1521 MLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFI 1342
MLSAGF PQTEPHL+ MLSCIRSAQL DL AK R FVP GRWLMGCLDELG LEHGQCFI
Sbjct: 727 MLSAGFKPQTEPHLKAMLSCIRSAQLGDLLAKARXFVPKGRWLMGCLDELGVLEHGQCFI 786
Query: 1341 QTSLPSLENCFAKHGSRFSW-TKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLV 1165
Q+S+PSLENCF KHGSRFS KN +VI G V IAKNPCLHPGDIRIL+AVDVP LHHLV
Sbjct: 787 QSSIPSLENCFMKHGSRFSGIKKNRQVIVGTVAIAKNPCLHPGDIRILEAVDVPSLHHLV 846
Query: 1164 DCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPV 985
DCLVFPQKGDRPH +EASGSDLDGDLYFVTWDENL+PP K+SW PMDY PA K + V
Sbjct: 847 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPGKKSWIPMDYTPAKPKLEPRGV 906
Query: 984 TQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKS 805
T +DII+FF KNMV ENLGVICNAHVVHAD SE GALDEKCL+LAELAA AVDFPKTGK
Sbjct: 907 TPRDIIDFFLKNMVNENLGVICNAHVVHADCSEYGALDEKCLQLAELAATAVDFPKTGKL 966
Query: 804 ATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNEGSEEVTYLPEDVPYD 625
MP +L+PK+YPDFMGKD+ SY+S+KVLG LYR I D DN+ S E+ E++PYD
Sbjct: 967 VMMPPALKPKVYPDFMGKDDHMSYQSQKVLGILYRNIKD-ATDNDVSSELLCTAEELPYD 1025
Query: 624 TDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDI 445
DL+IPG+ ++ADAW +C+YDGQLNALL Q++V +E E VTGH+WS+PKYNSRK G++
Sbjct: 1026 ADLDIPGASDYLADAWXKQCSYDGQLNALLAQYRVRSEGEVVTGHIWSLPKYNSRKQGEL 1085
Query: 444 KEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVE 265
KE+L++AY+ALH+EFR FE MGPD + LTDDEK L YEQKASAWY VTY PRW+KK E
Sbjct: 1086 KERLRNAYSALHKEFRRIFENMGPDFQQLTDDEKCLSYEQKASAWYQVTYQPRWIKKLSE 1145
Query: 264 LGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
+ E DGD VP RLSFAWIA DYLVRIKIR +FD +PID+LA YL+++I
Sbjct: 1146 IEEADGDAVPARLSFAWIAADYLVRIKIRSGDRGRFDNKRPIDTLACYLSERI 1198
>ref|XP_010921974.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis
guineensis]
Length = 1198
Score = 1707 bits (4421), Expect = 0.0
Identities = 830/1193 (69%), Positives = 982/1193 (82%), Gaps = 1/1193 (0%)
Frame = -3
Query: 3681 QEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTS 3502
++ KE+VV+Q SFGGFD +VSAKDL +F+E E GL+WRCR+K SWTPPESYP++ V + S
Sbjct: 9 RDQKELVVSQVSFGGFDERVSAKDLTDFMEHEAGLIWRCRVKNSWTPPESYPNFNVLDVS 68
Query: 3501 LVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRR 3322
V R +++ KVVPHAFVHF A +CELI+ G PL+AN +SS R+NRRR
Sbjct: 69 DVLRKDDHPKVVPHAFVHFATPDAAKRAINAAGKCELILNGHPLRANSGIDSSFRINRRR 128
Query: 3321 GTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKST 3142
T+PF+F DV EIGTL +RDEF V WKGP GVDF++DPFD C+ILFS ETAF+FK
Sbjct: 129 TTDPFRFVDVGVEIGTLASRDEFLVAWKGPKLGVDFLIDPFDGCCRILFSKETAFAFKDI 188
Query: 3141 KRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNL 2962
K +VIKCDFKVEFLVR+I E+KL+ +R +L QLSS+PWVYYRTADD+IH T F+L
Sbjct: 189 KEMAVIKCDFKVEFLVRDINEVKLFTDRYPHVMLFQLSSTPWVYYRTADDDIHVTASFSL 248
Query: 2961 LDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVV 2782
LDDEDPWIRTTDF+ GAI R ++YR+S SPR+G LE++LAYLR+RRI EH P+R L V
Sbjct: 249 LDDEDPWIRTTDFTPGGAISRSSSYRVSFSPRYGRILEKSLAYLRERRIAEHWPKRPLAV 308
Query: 2781 QDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEV 2602
++EPEFG + D FFS+ YKEG+SF I+FLV+AL+H+GIVNQ+QLSE+FF LLR+++ V
Sbjct: 309 REEPEFGTLMPDPFFSVQYKEGISFSIMFLVDALVHKGIVNQHQLSEEFFALLRSQSDAV 368
Query: 2601 NVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYC 2422
N AL H+ +YK PIFD KRLKLVQ+WLLKNPKLLKS+++ +D+ EVRRLVITPTKAYC
Sbjct: 369 NEIALRHIWAYKTPIFDPRKRLKLVQDWLLKNPKLLKSSKLLDDSTEVRRLVITPTKAYC 428
Query: 2421 LPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKT 2242
LPP VELSNRVLR YK+V DRFLRVTFMDEGMQ LN+++L YY A IVK++TS+S PQKT
Sbjct: 429 LPPEVELSNRVLRNYKKVADRFLRVTFMDEGMQPLNNNVLNYYVAPIVKELTSNSFPQKT 488
Query: 2241 TIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFN 2062
T+F+RV++I DGF+LCGR+YSFLAFSSNQLRD SAWFFA+D T V +IR+WMG+F
Sbjct: 489 TVFRRVRNILLDGFHLCGRRYSFLAFSSNQLRDRSAWFFAEDSNTSV--MAIRNWMGKFA 546
Query: 2061 IKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQ 1882
K VAKCAARMGQCFSSTYATVDVP Q +P LPDI+RN YVFSDGIGKI P+LA+EVA+
Sbjct: 547 NKNVAKCAARMGQCFSSTYATVDVPLDQFNPLLPDIERNGYVFSDGIGKIIPELAIEVAE 606
Query: 1881 KLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQ 1702
KLQLT NPP AYQIRYAG KGVV WP D G RL LRPSM KF S HT+LEVVSWTRFQ
Sbjct: 607 KLQLTENPPSAYQIRYAGFKGVVAVWPADDDGVRLSLRPSMNKFESSHTMLEVVSWTRFQ 666
Query: 1701 PGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAI 1522
PGFLNRQI+TLLS+L V D VF MQ+SM+ KLNQ+L +TDVAF+VLT+SC+EQGN+AAI
Sbjct: 667 PGFLNRQIVTLLSSLNVADSVFESMQDSMIYKLNQMLVDTDVAFDVLTSSCAEQGNTAAI 726
Query: 1521 MLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFI 1342
MLSAGF PQ EPHL+ MLSCIRSAQL DL AK RIFVP GRWLMGCLDELG LEHGQCFI
Sbjct: 727 MLSAGFKPQMEPHLKAMLSCIRSAQLGDLLAKARIFVPKGRWLMGCLDELGVLEHGQCFI 786
Query: 1341 QTSLPSLENCFAKHGSRFS-WTKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLV 1165
Q+S+PSLENCF KHGSRFS KN +VI G V IAKNPCLHPGDIRIL+AVDVP LHHLV
Sbjct: 787 QSSIPSLENCFMKHGSRFSLLKKNRQVIVGTVAIAKNPCLHPGDIRILEAVDVPSLHHLV 846
Query: 1164 DCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPV 985
DCLVFPQKGDRPH +EASGSDLDGDLYFVTWDENL+PPSK+SW PMDY PA K + V
Sbjct: 847 DCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWIPMDYTPAEPKLQPRAV 906
Query: 984 TQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKS 805
T +DII+FF KNMV ENLGVICNAHVVHAD SE GALDE CL+LAELAA AVDFPKTGK
Sbjct: 907 TPRDIIDFFLKNMVNENLGVICNAHVVHADRSEYGALDENCLQLAELAATAVDFPKTGKL 966
Query: 804 ATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNEGSEEVTYLPEDVPYD 625
TMP L+PK+YPDFMGKD+ SYKS+KVLG+LYR I + DN+ S E+ E++PYD
Sbjct: 967 VTMPSGLKPKVYPDFMGKDDHMSYKSQKVLGRLYRN-IKYAADNDVSTELPCTAEELPYD 1025
Query: 624 TDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDI 445
TDL+IPG+ Y++ADAW +KC+YDGQLNALL Q++V +E E VTGH+WS+PKYNSRK G++
Sbjct: 1026 TDLDIPGASYYLADAWQNKCSYDGQLNALLAQYRVRSEGEVVTGHIWSLPKYNSRKQGEL 1085
Query: 444 KEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVE 265
KE+LK+AY+ALH+EFR FE MGPD + LTDDEK++ YEQ+ASAWY VTYHPRW+K+S E
Sbjct: 1086 KERLKNAYSALHKEFRRIFEDMGPDFQQLTDDEKSVSYEQRASAWYQVTYHPRWIKRSGE 1145
Query: 264 LGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
+ EPDGD VP RLSFAW+A DYLVRIKI Q KFD +PID+LA YL+++I
Sbjct: 1146 IKEPDGDVVPARLSFAWVAADYLVRIKISSQDRQKFDNSRPIDTLACYLSERI 1198
>ref|XP_009389500.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
SHL2 [Musa acuminata subsp. malaccensis]
Length = 1199
Score = 1647 bits (4265), Expect = 0.0
Identities = 812/1194 (68%), Positives = 974/1194 (81%), Gaps = 3/1194 (0%)
Frame = -3
Query: 3678 EAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSL 3499
E KE+ V+Q SFGGFD +VSAK+L +FLE E G++WRCR+KTSWTPPESYP + ++ +
Sbjct: 9 EQKEMTVSQVSFGGFDAKVSAKELADFLEYEAGIIWRCRVKTSWTPPESYPVFKGTDDAF 68
Query: 3498 -VHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRR 3322
V R ++Y +VVPHAFVHF A +C+L++ G PL+AN+ TESS RVNRRR
Sbjct: 69 DVPRKDDYGRVVPHAFVHFARPDAVKKAMDAAGKCDLVLNGRPLRANVGTESSFRVNRRR 128
Query: 3321 GTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKST 3142
T+PF+FS+ EIG LV+RDEF V WKGP+S VDFV+DPFD CKILFS ETAF FK
Sbjct: 129 TTDPFRFSNACVEIGNLVSRDEFLVSWKGPDSAVDFVIDPFDDCCKILFSKETAFYFKGL 188
Query: 3141 KRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNL 2962
+ ++I CDFKVEFL+R+I E++++K+ A + QL S+P+VYYRTADD+I+ +VPFNL
Sbjct: 189 REMTLIMCDFKVEFLLRDINEVRVHKDAAPFVMQFQLISAPYVYYRTADDDIYTSVPFNL 248
Query: 2961 LDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVV 2782
LDDEDPWIRTTD + SGAIGRCN+YRIS+SPRFG K+ER+LAYLR+ + E+RPR +LVV
Sbjct: 249 LDDEDPWIRTTDITPSGAIGRCNSYRISLSPRFGPKMERSLAYLREHGVAENRPRCRLVV 308
Query: 2781 QDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEV 2602
+DEP +GA + D FF I K+G++F +FLVNAL+HRGIVNQ+QLSE+FF LLR ++ V
Sbjct: 309 RDEPGYGAHMSDPFFCIQNKKGINFATMFLVNALVHRGIVNQHQLSEEFFSLLRCQSEMV 368
Query: 2601 NVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYC 2422
N TAL H+ SYKHPIFDA RLKLVQEWLL+NPKLL+ ++ S+D EVR+LVITPTKAYC
Sbjct: 369 NGTALMHILSYKHPIFDAPGRLKLVQEWLLRNPKLLRHSKFSDDIIEVRKLVITPTKAYC 428
Query: 2421 LPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKT 2242
LPP VELSNRVLRKYKEV DRFLRVTF DEGMQQLNS++L YY A IV+DITS+S PQKT
Sbjct: 429 LPPEVELSNRVLRKYKEVADRFLRVTFTDEGMQQLNSNVLNYYVAPIVRDITSNSFPQKT 488
Query: 2241 TIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITG-VTGTSIRSWMGRF 2065
T+FKRVK I +GF+L G+KYSFLAFSSNQLRD SAWFFA+ ++G +T +IR+WMG+F
Sbjct: 489 TVFKRVKDILTNGFHLYGQKYSFLAFSSNQLRDRSAWFFAE--VSGSITVATIRNWMGKF 546
Query: 2064 NIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVA 1885
+ K VAKCAARMGQCFSSTYATV+V +V+ +L DIKRN YVFSDGIGKITP+LALEVA
Sbjct: 547 SNKNVAKCAARMGQCFSSTYATVNVTPNEVNSELEDIKRNGYVFSDGIGKITPELALEVA 606
Query: 1884 QKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRF 1705
QKL LT +PP AYQIRYAGCKGVV WPG+D G +L LRPSM KF S+HT+LEVVSWTRF
Sbjct: 607 QKLHLTEDPPSAYQIRYAGCKGVVAVWPGNDDGIKLSLRPSMNKFESNHTILEVVSWTRF 666
Query: 1704 QPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAA 1525
QPGFLNRQI+TLLS+L VPD VF +MQ++M+ KLNQIL +T+VAFE+LTTSC+EQGN+AA
Sbjct: 667 QPGFLNRQIVTLLSSLKVPDSVFERMQDTMILKLNQILHDTNVAFEILTTSCAEQGNTAA 726
Query: 1524 IMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCF 1345
+MLSAGF PQ+EPHL+ MLSCIRS QL DL AKT+IFVP GR LMGCLDELG LEHGQCF
Sbjct: 727 MMLSAGFRPQSEPHLKAMLSCIRSTQLGDLLAKTKIFVPKGRLLMGCLDELGVLEHGQCF 786
Query: 1344 IQTSLPSLENCFAKHGSRFSWTKNVK-VITGKVIIAKNPCLHPGDIRILDAVDVPGLHHL 1168
IQ S PSLENC +KHGSRFS ++N + VI G V + KNPCLHPGDIRIL+AVDVP LHHL
Sbjct: 787 IQASTPSLENCLSKHGSRFSASQNNRQVIVGTVAVGKNPCLHPGDIRILEAVDVPELHHL 846
Query: 1167 VDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKP 988
VDCL+FPQ+GDRPHT+EASGSDLDGDLYFVTWDENL+PP K+SW PMDY PA VK+ +
Sbjct: 847 VDCLIFPQRGDRPHTNEASGSDLDGDLYFVTWDENLLPPGKKSWVPMDYTPAEVKQFPRQ 906
Query: 987 VTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGK 808
+ QDII+F+ KNMV EN GVICNAHVVHAD SE GALDE CL+LAELAA AVDFPKTGK
Sbjct: 907 ILPQDIIDFYLKNMVNENHGVICNAHVVHADRSEHGALDENCLKLAELAATAVDFPKTGK 966
Query: 807 SATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNEGSEEVTYLPEDVPY 628
TMP +L+PK YPDFMGK + SYKS+K+LG+LYRKI D D+E E+ ED+PY
Sbjct: 967 IVTMPPALKPKTYPDFMGKVDRLSYKSEKILGKLYRKIKD-ATDDELPSELPCTFEDLPY 1025
Query: 627 DTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGD 448
DTDLEI GS ++ADAW +K YD LNALL Q++VS+E E VTGH+WS+PKYNSRK G+
Sbjct: 1026 DTDLEIIGSLDYLADAWQNKVVYDRHLNALLAQYRVSSEGEVVTGHIWSLPKYNSRKQGE 1085
Query: 447 IKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSV 268
+KE+LK+AY++L ++FRH F+ M PD LTDDEK YE KASAWY VTYHPRWVKK
Sbjct: 1086 LKERLKNAYSSLRKQFRHIFKTMSPDLLQLTDDEKCFFYEMKASAWYQVTYHPRWVKKYN 1145
Query: 267 ELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
EL EPDGDGVP RLSFAWIA DYLVRIK+R + T +PIDS A+YL+ ++
Sbjct: 1146 ELKEPDGDGVPARLSFAWIAADYLVRIKVRARRGEHQITKRPIDSFASYLSGRV 1199
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 1642 bits (4252), Expect = 0.0
Identities = 788/1196 (65%), Positives = 957/1196 (80%), Gaps = 6/1196 (0%)
Frame = -3
Query: 3675 AKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLV 3496
AKE VVTQ S GGFD V+AKDL+E+L++ IGLVWRCRLKTSWTPPESYP++ +++ + +
Sbjct: 7 AKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKI 66
Query: 3495 HRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN-RRRG 3319
R+ +Y +VVPHAFVHF + RCEL + LK +L ++ +N RRR
Sbjct: 67 ERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQRRRT 126
Query: 3318 TEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTK 3139
T PFK SDV EIG LV+RDEF+VGW+GP SGVDF++DPFD TCK FS TAFS KST
Sbjct: 127 TTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLKSTS 186
Query: 3138 RQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLL 2959
+VIKCDFKVEFLVR+I E+ Y E + LLLQL+S+PWV+YRTADD+I VPF+LL
Sbjct: 187 EHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLL 246
Query: 2958 DDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIF---EHRPRRQL 2788
DD+DPWIRTTDF+ SGAIGRC++YR+SI PR G+KL +A+ YL++RR+ E RR++
Sbjct: 247 DDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRI 306
Query: 2787 VVQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETA 2608
+ DEP+FG + D FF IH+KEG++F++LFLVNA++H+GI NQ+QLS DFF LLRN+
Sbjct: 307 RILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHT 366
Query: 2607 EVNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKA 2428
EVNV+AL H+C+Y+ P+F+A +RLK VQEWLLKNP L K+ + D E+RRLVITPTKA
Sbjct: 367 EVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITPTKA 426
Query: 2427 YCLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQ 2248
YCLPP VELSNRVLRKYK+V DRFLRVTFMDEG+Q++NS++L YY A IV+DITS+S PQ
Sbjct: 427 YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQ 486
Query: 2247 KTTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGR 2068
KT IFKRV+SI +GFYLCGR+YSFLAFS+NQLRD SAWFF++++ ++ ++SWMG+
Sbjct: 487 KTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEER--NISVLDVKSWMGK 544
Query: 2067 FNIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEV 1888
F + +AKCAARMGQCFSSTYAT++VP +V+ DLPDI+RN YVFSDGIG ITPDLA EV
Sbjct: 545 FTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLAREV 604
Query: 1887 AQKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTR 1708
A+KL+L ++PPCAYQIRYAGCKGVV CWPG G RL LRPSM KF S+HT LE+ SWTR
Sbjct: 605 AEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTR 664
Query: 1707 FQPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSA 1528
FQPGFLNRQI+TLLS L VPD VF KMQE+MV KLNQ+ N+DVAF+VLT SC++QGN A
Sbjct: 665 FQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVA 724
Query: 1527 AIMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQC 1348
AIMLSAGF P EPHLRGML+C+R+AQL DL KTRIFVP GRWLMGCLDELG LE GQC
Sbjct: 725 AIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQC 784
Query: 1347 FIQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHH 1171
FIQ S SLE CF KHG++FS KN++VI G V+IAKNPCLHPGD+R+L+AVDVPGLHH
Sbjct: 785 FIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHH 844
Query: 1170 LVDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKK 991
L DCLVFPQKG+RPHT+EASGSDLDGDLYFVTWDENL+PPSKRSW PM Y A K L +
Sbjct: 845 LYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLAR 904
Query: 990 PVTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTG 811
PV QDIIEFF KNMV +NLG ICNAHVVHADLSE GA D+ CL LAELAA AVDFPKTG
Sbjct: 905 PVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTG 964
Query: 810 KSATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDV 634
K +MP L+PK+YPDFMGK+E+QSYKS+K+LG+LYR+I D + D S E+ +P D+
Sbjct: 965 KVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDI 1024
Query: 633 PYDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKL 454
PYD+DLE+ G+ +++DAW KC+YDGQLN LL Q+KV EEE VTGH+WSMPKY+SRK
Sbjct: 1025 PYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQ 1084
Query: 453 GDIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKK 274
G++K++LKH+Y +L +EFR FE M + + L D EKN LYEQKASAWY V YHP WVKK
Sbjct: 1085 GELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKK 1144
Query: 273 SVELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
S+EL +PDG G V LSFAWIA DYL RIKIR + D+ KP++SLA YLAD++
Sbjct: 1145 SLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200
>ref|XP_012071453.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
gi|643731347|gb|KDP38635.1| hypothetical protein
JCGZ_03988 [Jatropha curcas]
Length = 1198
Score = 1642 bits (4251), Expect = 0.0
Identities = 796/1199 (66%), Positives = 952/1199 (79%), Gaps = 4/1199 (0%)
Frame = -3
Query: 3690 GTLQEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVS 3511
GT + K+ VVTQ SFGGF+N V+AKDL+ +LE+ IG VWRCRLKTSWTPPESYP++ ++
Sbjct: 2 GTERSEKDTVVTQVSFGGFENHVNAKDLVAYLEEVIGQVWRCRLKTSWTPPESYPNFKIT 61
Query: 3510 NTSLVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN 3331
+T+ +HR+NEY++V PHAFVHF A RCEL + PLK +L E+ +N
Sbjct: 62 DTAGIHRTNEYKRVEPHAFVHFALAESATWAKNAAGRCELFLNDRPLKVSLGPENPFTLN 121
Query: 3330 -RRRGTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFS 3154
RRR T P K SDV EIG +V+RDEF VGW+GP SGVDF++DPFD TCK F+ +TAFS
Sbjct: 122 QRRRKTIPSKLSDVCIEIGMMVSRDEFLVGWRGPPSGVDFLVDPFDGTCKFCFTRDTAFS 181
Query: 3153 FKSTKRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTV 2974
K T + +VI+CDFK+EFLVR+I E+K YK+ + +LLQL+S+PWV+YRTADD+I V
Sbjct: 182 IKDTNKHAVIRCDFKLEFLVRDINEIKQYKDTSYLVILLQLASAPWVWYRTADDDIEVLV 241
Query: 2973 PFNLLDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRR 2794
PFNLLDD+DPWIRTTDF+ SGAIGRCN+YR+SI PR GAKLERA+ YL++RR+ RR
Sbjct: 242 PFNLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLERAINYLKERRVQVDSLRR 301
Query: 2793 QLVVQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNE 2614
L + +EP++G + D FF IH KEG++F+I+FLVNA++H+GI NQ+QLS+DFF LLRN+
Sbjct: 302 PLKILNEPDYGMPMSDPFFCIHRKEGIAFEIVFLVNAVMHKGIFNQHQLSDDFFDLLRNQ 361
Query: 2613 TAEVNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPT 2434
A++NV AL H+CSYK P+FDA +RLK VQEWLLKNPKL K + +D ++RRL ITPT
Sbjct: 362 PADINVAALKHICSYKRPVFDAHRRLKAVQEWLLKNPKLFKCPKQLDDIVQIRRLAITPT 421
Query: 2433 KAYCLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSI 2254
+AYCLPP +ELSNRVLRKYK DRFLRVTFMDEG+Q +N++ LTYY A IV+DITS S
Sbjct: 422 RAYCLPPEIELSNRVLRKYKNFADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTSF 481
Query: 2253 PQKTTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWM 2074
QKT IFKRVKSI DGFYLCGR+YSFLAFSSNQLRD SAWFFA+D V IR WM
Sbjct: 482 SQKTRIFKRVKSILTDGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDGKIRV--DQIRKWM 539
Query: 2073 GRFNIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLAL 1894
G+F K +AKCAARMGQCFSSTYATV+VP +V+ PDI+RN Y FSDGIG ITPDLA
Sbjct: 540 GKFTNKNIAKCAARMGQCFSSTYATVEVPSAEVNLAHPDIERNGYTFSDGIGMITPDLAK 599
Query: 1893 EVAQKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSW 1714
VA+KL+L +NPPCAYQIRYAGCKGVV CWP G RL LRPSM KF S+HT LE+ SW
Sbjct: 600 AVAEKLKLDINPPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLEICSW 659
Query: 1713 TRFQPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGN 1534
TRFQPGFLNRQI+TLLS L V D +F KMQ +MV KLN++L + DVAF+V+T SC+EQGN
Sbjct: 660 TRFQPGFLNRQIITLLSTLNVSDEIFWKMQIAMVSKLNKMLTDADVAFDVITASCTEQGN 719
Query: 1533 SAAIMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHG 1354
+AA+MLSAGF PQ EPHLRGML+CIR+AQ DL K RIFV GRWLMGCLDELG LE G
Sbjct: 720 TAALMLSAGFKPQNEPHLRGMLTCIRAAQFCDLREKARIFVSSGRWLMGCLDELGVLEQG 779
Query: 1353 QCFIQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGL 1177
QCFIQ S PSLE CF+KHGSRFS T KN++VITG V+IAKNPCLHPGD+RIL+AVD PGL
Sbjct: 780 QCFIQVSNPSLETCFSKHGSRFSETKKNLQVITGTVVIAKNPCLHPGDVRILEAVDAPGL 839
Query: 1176 HHLVDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKEL 997
HL DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWDENL+PPSK+SW PM Y A K L
Sbjct: 840 CHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKQSWTPMQYDAAEPKLL 899
Query: 996 KKPVTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPK 817
+PV+ QDII+FF KNMV E+LG ICNAHVV ADLSE GALDE C++LAELAA AVDFPK
Sbjct: 900 SRPVSHQDIIDFFAKNMVNESLGAICNAHVVRADLSEYGALDENCIKLAELAATAVDFPK 959
Query: 816 TGKSATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNE--GSEEVTYLP 643
TGK T+P L+PK+YPDFMGK+E+QSYKS K+LG+LYR I D GD++ S E+
Sbjct: 960 TGKLVTLPQYLKPKMYPDFMGKEEYQSYKSTKILGRLYRDIKDAYGDDDAAASSELNCSS 1019
Query: 642 EDVPYDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNS 463
D+PYDT+LE+ GS ++ +AW KC+YDGQL LLGQ+KV EEE VTGH+WSMP YNS
Sbjct: 1020 GDIPYDTNLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKKEEELVTGHIWSMPMYNS 1079
Query: 462 RKLGDIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRW 283
RKLG++KE+LKH+Y+AL +EFR FE M D + LTDDEKNLLYE+KASAWY VTYHP+W
Sbjct: 1080 RKLGELKERLKHSYSALKKEFRQVFEKMDLDFEQLTDDEKNLLYERKASAWYQVTYHPKW 1139
Query: 282 VKKSVELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
+KKS+EL EPD G LSFAWIA DYL RIKI+ +G DT KP++SL YLAD+I
Sbjct: 1140 IKKSLELQEPDAAGNATILSFAWIAADYLARIKIKHRGTEGVDTAKPVNSLVKYLADRI 1198
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 1642 bits (4251), Expect = 0.0
Identities = 797/1194 (66%), Positives = 950/1194 (79%), Gaps = 4/1194 (0%)
Frame = -3
Query: 3675 AKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLV 3496
AKE VVTQ S GGFD V+AKDL+E+LE+EIGLVWRCRLKTSWTPPESYP++ +++ + +
Sbjct: 7 AKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKI 66
Query: 3495 HRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN-RRRG 3319
R+ +Y +V PHAFVHF A RCEL + LKA+L E+ +N RRR
Sbjct: 67 TRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRK 126
Query: 3318 TEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTK 3139
T PFK S V EIGTLV+RDEF+VGW+GP +GVDF++DPFD TC+ FS TAFSFKST
Sbjct: 127 TTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTA 186
Query: 3138 RQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLL 2959
+VIKCDFKVEFLVR+I E+K Y E + LLLQL+S+P V+YRTADD+I +VPF+LL
Sbjct: 187 EHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLL 246
Query: 2958 DDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQ 2779
DD+DPWIRTTDF+ SGAIGRC++YR+SI PR G KL +A+ +L++RR+ E RR + ++
Sbjct: 247 DDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIR 306
Query: 2778 DEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVN 2599
DEP+FG + D FF IH+KEG++FD+LFLVNA++H+GI NQ+QLS DFF LLRN+ EVN
Sbjct: 307 DEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVN 366
Query: 2598 VTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCL 2419
V AL H+ Y+ P+FDA K+LK+ QEWLLKNPK K+ + +D AE+RRLVITPTKAYCL
Sbjct: 367 VAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCL 426
Query: 2418 PPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTT 2239
PP VELSNRVLRKYK+V DRFLRVTFMDEG+Q +NS+ L Y+ A IV+ ITS+S PQKT
Sbjct: 427 PPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTR 486
Query: 2238 IFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNI 2059
IFKRV+SI +GFYLCGR+YSFLAFSSNQLRD SAWFFA+D+ + +I+SWMG+F
Sbjct: 487 IFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDR--NINVMAIKSWMGKFTN 544
Query: 2058 KIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQK 1879
K +AKCAARMGQCFSSTYAT++VP +V+ DLPDIKRN Y FSDGIG ITPDLA EVA+K
Sbjct: 545 KNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEK 604
Query: 1878 LQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQP 1699
L+ +PPCAYQIRYAGCKGVV CWP G RL LR SM KF S+HT+LE+ SWTRFQP
Sbjct: 605 LKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQP 664
Query: 1698 GFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIM 1519
GFLNRQI+TLLSAL VPD VF KMQE MV KLNQ+L ++DVAF+VLT SC+EQGN AAIM
Sbjct: 665 GFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIM 724
Query: 1518 LSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQ 1339
LSAGF PQ EPHLRGML+C+R+AQL L K RIFVP GRWLMGCLDELG LE GQCFIQ
Sbjct: 725 LSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQ 784
Query: 1338 TSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVD 1162
S LENCF KHGS+FS T KN++V+ G V+IAKNPCLHPGDIRIL+AVD PGLHHL D
Sbjct: 785 VSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYD 844
Query: 1161 CLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVT 982
CLVFPQKG+RPH +EASGSDLDGDLYFVTWDENL+PPSKRSW PM Y A K+L +PV
Sbjct: 845 CLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVN 904
Query: 981 QQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSA 802
QDI+EFF KNM ENLG ICNAHVV ADLSE GALDEKCL LAELAA AVDFPKTGK
Sbjct: 905 HQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIV 964
Query: 801 TMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNE--GSEEVTYLPEDVPY 628
+MP L+PK+YPDFMGK+E QSYKSKK+LG+LYR+I D D++ S E+ ++ D+PY
Sbjct: 965 SMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPY 1024
Query: 627 DTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGD 448
D DLE+ G+ F++DAW KC+YDGQLN LL Q+KV EEE VTGHVWSMPK +SRK GD
Sbjct: 1025 DLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGD 1084
Query: 447 IKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSV 268
+KE+LKH+Y L REFR FE M D L DDEKN+LYE+KASAWY VTYHP W++KS+
Sbjct: 1085 LKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSL 1144
Query: 267 ELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
EL + DG G+ V LSFAWIA DYL RIKIR + D+ KP++SLA YLAD++
Sbjct: 1145 ELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|XP_011039698.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
Length = 1195
Score = 1636 bits (4237), Expect = 0.0
Identities = 797/1194 (66%), Positives = 951/1194 (79%), Gaps = 4/1194 (0%)
Frame = -3
Query: 3675 AKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLV 3496
AKE VVTQ S GGFD V+AKDL+E+LE+EIGLVWRCRLKTSWTPPESYP++ +++ + +
Sbjct: 7 AKETVVTQVSIGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEIADLTKI 66
Query: 3495 HRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN-RRRG 3319
R+ +Y +V PHAFVHF A RCEL + LKA+L E+ +N RRR
Sbjct: 67 TRTEDYRRVEPHAFVHFALPESATWAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRK 126
Query: 3318 TEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTK 3139
T PFK SDV EIGTLV+RDEF+VGW+GP +GVDF++DPFD TC+ FS TAFSFKST
Sbjct: 127 TTPFKLSDVDVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTA 186
Query: 3138 RQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLL 2959
+VIKCDFKVEFLVR+I E+K YKE + LLLQL+S+PWV+YRTADD+I +VPF+LL
Sbjct: 187 EHAVIKCDFKVEFLVRDINEIKQYKETSCLVLLLQLASAPWVWYRTADDDIEVSVPFDLL 246
Query: 2958 DDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQ 2779
DD+DPWIRTTDF+ SGAIGRC++YR+SI PR G KL +A+ +L++RR+ E RR + ++
Sbjct: 247 DDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIR 306
Query: 2778 DEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVN 2599
DEP+FG + D FF IH+KEG++FD+LFLVNA++H+GI NQ+QLS DFF LLRN+ EVN
Sbjct: 307 DEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVN 366
Query: 2598 VTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCL 2419
V AL H+ Y+ P+FDA K+LK+ QEWLLKNPKL K+ + +D AE+RRL+ITPTKAYCL
Sbjct: 367 VAALKHIYPYRRPVFDAYKKLKVTQEWLLKNPKLFKNQKKLDDIAEIRRLIITPTKAYCL 426
Query: 2418 PPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTT 2239
PP VELSNRVLRKYK+V DRFLRVTFMDEG+Q +NS+ L Y+ A IV+ ITS+S PQKT
Sbjct: 427 PPEVELSNRVLRKYKDVADRFLRVTFMDEGVQTMNSNALNYFAAPIVRAITSYSFPQKTR 486
Query: 2238 IFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNI 2059
IFKRV+SI +GFYLCGR+YSFLAFSSNQLRD SAWFFA+D+ + +I+SWMG+F
Sbjct: 487 IFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDR--NINVMAIKSWMGKFTN 544
Query: 2058 KIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQK 1879
K +AKCAARMGQCFSSTYAT++VP +V+ DLPDIKRN Y FSDGIG ITPDLA EVA+K
Sbjct: 545 KNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEK 604
Query: 1878 LQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQP 1699
L+ +PP AYQIRYAGCKGVV CWP G RL LR SM KF S+HT+LE+ SWTRFQP
Sbjct: 605 LKFDFDPPSAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQP 664
Query: 1698 GFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIM 1519
GFLNRQI+TLLSAL VPD VF KMQE MV KLNQ+L ++DVAF+VLT SC+E GN AAIM
Sbjct: 665 GFLNRQIITLLSALNVPDAVFWKMQEIMVSKLNQMLVDSDVAFDVLTASCAELGNVAAIM 724
Query: 1518 LSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQ 1339
LSAGF PQ EPHLRGML+C+R+AQL L K RIFVP GRWLMGCLDEL LE GQCFIQ
Sbjct: 725 LSAGFKPQKEPHLRGMLNCVRAAQLWGLREKARIFVPSGRWLMGCLDELAVLEQGQCFIQ 784
Query: 1338 TSLPSLENCFAKHGSRFSWTK-NVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVD 1162
S LENCF KHGS+FS TK N++V+ G V+IAKNPCLHPGDIRIL+AVD PGLHHL D
Sbjct: 785 VSNSYLENCFVKHGSKFSETKRNLQVVKGTVVIAKNPCLHPGDIRILEAVDDPGLHHLYD 844
Query: 1161 CLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVT 982
CLVFPQKG+RPH +EASGSDLDGDLYFVTWDENL+PPSKRSW PM Y A K+L +PV
Sbjct: 845 CLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVN 904
Query: 981 QQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSA 802
QDIIEFF KNM ENLG ICNAHVV ADLSE GALDEKCL LAELAA AVDFPKTGK
Sbjct: 905 HQDIIEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIV 964
Query: 801 TMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNE--GSEEVTYLPEDVPY 628
+MP L+PK+YPDFMGK+E QSYKSKK+LG+LYR+I D D++ S ++ ++P DVPY
Sbjct: 965 SMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSDLNFVPGDVPY 1024
Query: 627 DTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGD 448
D DLE+ G+ +++DAW KC+YDGQLN LL Q+KV EEE VTGHVWSMPK +SR+ GD
Sbjct: 1025 DLDLEVLGATDYISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRQQGD 1084
Query: 447 IKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSV 268
+KE+LKH+Y L REFR FE M D L DDEKN+LYE+KASAWY VTYHPRW++KS+
Sbjct: 1085 LKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPRWIQKSL 1144
Query: 267 ELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
EL + DG + LSFAWIA DYL RIKIR + D+ KPI+SLA YLAD++
Sbjct: 1145 ELQDSDGAAM---LSFAWIAADYLARIKIRHSRIGNVDSAKPINSLAKYLADRM 1195
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 1635 bits (4233), Expect = 0.0
Identities = 793/1203 (65%), Positives = 950/1203 (78%), Gaps = 9/1203 (0%)
Frame = -3
Query: 3687 TLQEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSN 3508
T + KE VVTQ SFGGFD V+A+DL+ +L+ EIG VWRCRLKTSWTPPESYP++ +++
Sbjct: 3 TKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITD 62
Query: 3507 TSLVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN- 3331
T+++ R + Y +V PHAFVHF A CEL G P+K +L E+ +N
Sbjct: 63 TAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122
Query: 3330 RRRGTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSF 3151
RRR T PFK SDV EIGTLV+RDEF VGW+GP SGVDF++DPFD CK F+ +TAFSF
Sbjct: 123 RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSF 182
Query: 3150 KSTKRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVP 2971
K T +VI+CDFK+EFLVR+I E+K Y + + +LLQL+S+P V+YRTADD+I VP
Sbjct: 183 KGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVP 242
Query: 2970 FNLLDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQ 2791
F+LLDD+DPWIRTTDF+ SGAIGRCN+YR+SI PR GAKL+RAL +LR+RR+ E RR
Sbjct: 243 FDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRP 302
Query: 2790 LVVQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNET 2611
L V EPE+ + D FF IH++EGV F+++FLVNA++H+GI NQ+QLS+ FF LLRN+
Sbjct: 303 LHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQP 362
Query: 2610 AEVNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTK 2431
+VN+ AL H+CSYKHP+FDA KRLK VQ+WLLKNPKL +S++ +D E+RRL ITPT+
Sbjct: 363 LDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTR 422
Query: 2430 AYCLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIP 2251
AYCLPP VELSNRVLR+YK++ D+FLRVTFMDEG+Q +N++ LTYY A IV+DITS+S
Sbjct: 423 AYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFS 482
Query: 2250 QKTTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMG 2071
QKT IFKRVKSI DGFYLCGRKYSFLAFSSNQLRD SAWFFA+D T V + IR+WMG
Sbjct: 483 QKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSV--SKIRNWMG 540
Query: 2070 RFNIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALE 1891
+F + +AKCAARMGQCFSSTYATV+VP + DLPDI+RN+Y+FSDGIG ITPDLA E
Sbjct: 541 KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600
Query: 1890 VAQKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWT 1711
VA+KL+L +NPPCAYQIRYAGCKGVV CWP G RL LR SM KF S+HT LE+ SWT
Sbjct: 601 VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660
Query: 1710 RFQPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNS 1531
RFQPGFLNRQI+TLLS L VPD +F KMQ MV KLNQ+ + DVAF+V+T SC+EQGN+
Sbjct: 661 RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720
Query: 1530 AAIMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQ 1351
AAIMLSAGFNP+TEPHL GML+CIR+AQL L KTRIFVP GRWLMGCLDELG LEHGQ
Sbjct: 721 AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780
Query: 1350 CFIQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLH 1174
CFIQ S PSLE+CF KHGSRFS + K ++V+ G V++AKNPCLHPGDIRIL+AVD P LH
Sbjct: 781 CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840
Query: 1173 HLVDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELK 994
HL DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWDENL+PPSKRSW PM Y A K+L
Sbjct: 841 HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900
Query: 993 KPVTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKT 814
+PV QDII+FF KNMV ENLG ICNAHVVHADLSE GALDE C++LAELAA AVDFPKT
Sbjct: 901 RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960
Query: 813 GKSATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNEG-------SEEV 655
GK TMP L+PKLYPDFMGK+++QSY S K+LG+LYR++ D D++ S E+
Sbjct: 961 GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020
Query: 654 TYLPEDVPYDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMP 475
+ D+PYD DLE+ GS ++ DAW KC+YDGQL LL Q+KV EEE VTGH+WSMP
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMP 1080
Query: 474 KYNSRKLGDIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTY 295
K NSRK G++KE+LK +Y +L +EFR FE M D + LT+DEKNLLYEQKASAWY V Y
Sbjct: 1081 KCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAY 1140
Query: 294 HPRWVKKSVELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLA 115
HP+WV KS+EL EPD G LSFAWIA DYL RIKIRC+G + DT KP++SL YLA
Sbjct: 1141 HPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLA 1200
Query: 114 DKI 106
D+I
Sbjct: 1201 DRI 1203
>ref|XP_011026450.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
Length = 1200
Score = 1629 bits (4218), Expect = 0.0
Identities = 788/1196 (65%), Positives = 951/1196 (79%), Gaps = 6/1196 (0%)
Frame = -3
Query: 3675 AKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLV 3496
AKE VVTQ S GGF V+AKDL E+L++ IGLVWRCRLKTSWTPPESYP++ +++ + +
Sbjct: 7 AKETVVTQVSVGGFGIHVTAKDLSEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDITKI 66
Query: 3495 HRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNR-RRG 3319
R+ +Y +VVPHAFVHF + RCEL + LK +L ++ +N+ RR
Sbjct: 67 ERTEDYRRVVPHAFVHFALPQSATWAMNASERCELFLNDKALKVSLGPKNPFTLNQQRRT 126
Query: 3318 TEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTK 3139
T PFK SDV EIG+LV+ DEF+VGW+GP SGVDF++DPFD TC+ FS TAFS KST
Sbjct: 127 TTPFKLSDVGFEIGSLVSHDEFFVGWRGPPSGVDFLVDPFDGTCRFCFSRNTAFSLKSTS 186
Query: 3138 RQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLL 2959
+VIKC FKVEFLVR+I E+ Y E + LLLQL+S+PWV+YRTADD+I VPF+LL
Sbjct: 187 EHAVIKCAFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPFDLL 246
Query: 2958 DDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIF---EHRPRRQL 2788
DD+DPWIRTTDF+ SGAIGRC++YR+SI PR G+KL +A+ YL++RR+ E RR++
Sbjct: 247 DDDDPWIRTTDFTGSGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVEVLQEENHRRRI 306
Query: 2787 VVQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETA 2608
+ DEP+FG + D FF IH+KEG++FD+LFLVNA++H+GI NQ+QLS DFF LLRN+
Sbjct: 307 RILDEPDFGMPMSDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHT 366
Query: 2607 EVNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKA 2428
EVNV+AL H+C+Y+ P+F+A KRLK VQEWLLKNP L K+ + D E+RRLVITPTKA
Sbjct: 367 EVNVSALKHICTYRRPVFNAYKRLKAVQEWLLKNPNLFKNPKQLGDIVEIRRLVITPTKA 426
Query: 2427 YCLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQ 2248
YCLPP VELSNRVLRKYK+V DRFLRVTFMDEG+Q++NS++L YY A IV+DITS+S Q
Sbjct: 427 YCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFHQ 486
Query: 2247 KTTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGR 2068
KT IFKRV+SI +GFYLCGR+YSFLAFS+NQLRD SAWFFA+++ V+ I+SWMG+
Sbjct: 487 KTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFAEER--NVSVLDIKSWMGK 544
Query: 2067 FNIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEV 1888
F + +AKCAARMGQCFSSTYAT++VP +V+ DLPDI+RN YVFSDGIG ITPDLA EV
Sbjct: 545 FTNRNIAKCAARMGQCFSSTYATIEVPPEEVNFDLPDIERNGYVFSDGIGIITPDLAREV 604
Query: 1887 AQKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTR 1708
A+KL+L ++PPCAYQIRYAGCKGVV CWPG G L LRPSM KF S+HT LE+ SWTR
Sbjct: 605 AEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVHLSLRPSMNKFQSNHTTLEICSWTR 664
Query: 1707 FQPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSA 1528
FQPGFLNRQI+TLLS L VPD VF KMQE+MV KLNQ+ N+DVAF+VLT SC++QGN A
Sbjct: 665 FQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVA 724
Query: 1527 AIMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQC 1348
AIMLSAGF PQ EPHLRGML+C+R+AQL L K RIFVP GRWLMGCLDELG LE GQC
Sbjct: 725 AIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGMLEQGQC 784
Query: 1347 FIQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHH 1171
FIQ S SLE CF KHG++FS KN++V+ G V+IAKNPCLHPGD+R+L+AVDVPGLHH
Sbjct: 785 FIQVSNSSLEKCFIKHGAKFSEAKKNLQVVKGTVVIAKNPCLHPGDVRVLEAVDVPGLHH 844
Query: 1170 LVDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKK 991
L DCLVFPQKG+RPHT+EASGSDLDGDLYFVTWDENL+PPSKRSW PM Y A K L +
Sbjct: 845 LYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLAR 904
Query: 990 PVTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTG 811
PV QDIIEFF KNMV ENLG ICNAHVVHADLSE GA+DEKCL LAELAA AVDFPKTG
Sbjct: 905 PVNHQDIIEFFAKNMVNENLGAICNAHVVHADLSEHGAMDEKCLTLAELAATAVDFPKTG 964
Query: 810 KSATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDV 634
K TMP L+PK+YPDFMGK+E+QSYKS+K+LG+LYR+I D + D S E+ +P D+
Sbjct: 965 KVVTMPSYLKPKVYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNPVPGDI 1024
Query: 633 PYDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKL 454
PYD+DLE+ G+ ++ DAW KC+YDGQLN LL Q+KV EEE VTGH+WSMPKY+SRK
Sbjct: 1025 PYDSDLEVVGASDYINDAWDQKCSYDGQLNGLLSQYKVKREEELVTGHIWSMPKYSSRKQ 1084
Query: 453 GDIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKK 274
G++K++LKH+Y +L +EFR FE M + + L D EKN LYEQKASAWY V YHP WVKK
Sbjct: 1085 GELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVAYHPHWVKK 1144
Query: 273 SVELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
S+EL +PDG G V LSF WIA DYL RIKIR + D+ KP++SLA YLAD+I
Sbjct: 1145 SLELQDPDGAGTSVMLSFGWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRI 1200
>ref|XP_012076580.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
gi|643724398|gb|KDP33599.1| hypothetical protein
JCGZ_07170 [Jatropha curcas]
Length = 1199
Score = 1625 bits (4208), Expect = 0.0
Identities = 784/1198 (65%), Positives = 948/1198 (79%), Gaps = 4/1198 (0%)
Frame = -3
Query: 3687 TLQEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSN 3508
T + K+ VVTQ SFGGFDN V AKDL+ +LE+EIG VWRCRLKTSWTPPESYP++ +++
Sbjct: 3 TQKSEKDTVVTQVSFGGFDNHVKAKDLVAYLEEEIGQVWRCRLKTSWTPPESYPNFEITD 62
Query: 3507 TSLVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN- 3331
+ +HR++EY++V PHAFVHF A CEL + PLK +L E+ +N
Sbjct: 63 AAAIHRTHEYKRVEPHAFVHFASAESATWAKNAAGHCELFLNDRPLKVSLGPENPFHLNQ 122
Query: 3330 RRRGTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSF 3151
RRR PFK SDV EIGTLV+RDEF VGW+GP+SGVDF++DPFD TCK F+ +TAFS
Sbjct: 123 RRRKNIPFKLSDVCIEIGTLVSRDEFLVGWRGPSSGVDFLVDPFDGTCKFCFTMDTAFSI 182
Query: 3150 KSTKRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVP 2971
K T + ++I+CDFK+EFLVR+I E+K Y + + +LLQL+S+P V+YRTADD+I +VP
Sbjct: 183 KDTTKHAIIRCDFKLEFLVRDINEVKQYTDTSCIVILLQLASAPLVWYRTADDDIEVSVP 242
Query: 2970 FNLLDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQ 2791
F+LLDD+DPWIRTTDF+ SGAIGRCN YR+SI PR GAKL+RA +L++RR+ E RR
Sbjct: 243 FDLLDDDDPWIRTTDFTPSGAIGRCNFYRVSIPPRHGAKLKRARNFLKERRVQEDSLRRP 302
Query: 2790 LVVQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNET 2611
L + +EP++G + D FF IH+KEG++F+I+FLVNA++H+GI NQ+QLS++FF LLRN++
Sbjct: 303 LKIVNEPDYGMPMSDPFFCIHHKEGIAFEIMFLVNAVMHKGIFNQHQLSDNFFDLLRNQS 362
Query: 2610 AEVNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTK 2431
++NV AL H+CSYK P+FDA K LK VQEWLLKNPKL K ++ +D E+RRL +TPT+
Sbjct: 363 LDINVAALKHICSYKQPVFDAHKGLKAVQEWLLKNPKLFKRSKQLDDIVEIRRLALTPTR 422
Query: 2430 AYCLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIP 2251
AYCLPP VELSNRVLRKYK + DRFLRVTFMDEG+Q +N++ LTYY A IV+DITS S
Sbjct: 423 AYCLPPEVELSNRVLRKYKNIADRFLRVTFMDEGLQTINANTLTYYVAPIVRDITSTSFS 482
Query: 2250 QKTTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMG 2071
QKT IF+RVKSI DGF LCGR+YSFLAFSSNQLRD SAWFFA+D V IR WMG
Sbjct: 483 QKTRIFRRVKSILTDGFNLCGRRYSFLAFSSNQLRDRSAWFFAEDGKISV--GQIRKWMG 540
Query: 2070 RFNIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALE 1891
RF + +AKCAARMGQCFSSTYATV+VP ++V+ LPDI+RN Y+FSDGIG ITPDLA E
Sbjct: 541 RFTNRNIAKCAARMGQCFSSTYATVEVPSSEVNHALPDIERNGYIFSDGIGTITPDLAKE 600
Query: 1890 VAQKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWT 1711
VA+KL+L +N PCAYQIRYAGCKGVV CWP G RL LRPSM KF S+HT LE+ SWT
Sbjct: 601 VAEKLKLDINLPCAYQIRYAGCKGVVACWPAQGDGIRLSLRPSMNKFQSNHTTLEICSWT 660
Query: 1710 RFQPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNS 1531
RFQPGFLNRQI+TLLS L V D VF +MQ +MV KLN++L + DVAF+V+T SC+EQGN+
Sbjct: 661 RFQPGFLNRQIITLLSTLNVSDEVFWEMQTAMVSKLNKMLTDADVAFDVITKSCAEQGNT 720
Query: 1530 AAIMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQ 1351
AAIMLSAGF PQ EPHLRGML+CIR+AQ L K RIFV GRWLMGCLDELG LE GQ
Sbjct: 721 AAIMLSAGFKPQNEPHLRGMLTCIRAAQFWGLREKARIFVTSGRWLMGCLDELGVLEQGQ 780
Query: 1350 CFIQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLH 1174
CFIQ S P LE CF+KHGS+FS T KN++VI G V+IAKNPCLHPGD+RIL+AVD PGLH
Sbjct: 781 CFIQVSNPCLETCFSKHGSKFSETKKNLQVIKGTVVIAKNPCLHPGDVRILEAVDAPGLH 840
Query: 1173 HLVDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELK 994
HL DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWD+NL+PPSK+SW PM Y A K L
Sbjct: 841 HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIPPSKKSWTPMQYDAAEAKLLN 900
Query: 993 KPVTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKT 814
+PV+ QDII+FF KNMV ENLG ICNAHVVHADLSE GALDE C++LAELAA AVDFPKT
Sbjct: 901 RPVSHQDIIDFFAKNMVNENLGAICNAHVVHADLSEHGALDENCIKLAELAATAVDFPKT 960
Query: 813 GKSATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIIDFQGDNEGS--EEVTYLPE 640
GK TMP L+PK+YPDFMGK+E+QSYKS K+LG+LYR+IID GD++ + E+ L
Sbjct: 961 GKLVTMPPYLKPKMYPDFMGKEEYQSYKSTKILGRLYRQIIDAYGDDDAAAFSELNCLSG 1020
Query: 639 DVPYDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSR 460
D+PYD DLE+ GS ++ +AW KC+YDGQL LLGQ+KV EEE VTGH+WSMP NSR
Sbjct: 1021 DIPYDADLEVLGSADYILEAWDQKCSYDGQLKGLLGQYKVKREEELVTGHIWSMPMSNSR 1080
Query: 459 KLGDIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWV 280
K GD+KE+LKH+Y+AL +EFR FE M D + LTDDEKNL YE+KASAWY V YHP+W+
Sbjct: 1081 KQGDLKERLKHSYSALKKEFRQVFEGMNLDVEQLTDDEKNLQYERKASAWYQVAYHPKWI 1140
Query: 279 KKSVELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
KKS+EL E D G LSF+WIA DYL RIKI+ +G DT KP++SL YL D+I
Sbjct: 1141 KKSLELQESDAPGNATMLSFSWIAADYLARIKIKRRGTEGIDTAKPVNSLVKYLTDRI 1198
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
gi|731385864|ref|XP_010648660.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Vitis vinifera]
gi|731385866|ref|XP_010648661.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1620 bits (4194), Expect = 0.0
Identities = 802/1194 (67%), Positives = 948/1194 (79%), Gaps = 5/1194 (0%)
Frame = -3
Query: 3672 KEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVH 3493
K++VVTQ S GGFD V+A +L +LE IG V RCRLKTS TPPESYPD+ + +T+ +
Sbjct: 8 KDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKIE 67
Query: 3492 RSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVN-RRRGT 3316
R+ +Y+KV PHAFVHF A + EL + G PLK +L E+ +N RRR T
Sbjct: 68 RTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTT 127
Query: 3315 EPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKR 3136
PFKF DVR EIG LV+RDE++ GW+GP+SGVDF++DPFD TCK LF+ +TAFSFK +
Sbjct: 128 FPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPK 187
Query: 3135 QSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLD 2956
+VIKC+FKVEFLVREI E++ ++ + LLLQLSSSP+VYYRTADD+I +TVPF+LLD
Sbjct: 188 HAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLD 247
Query: 2955 DEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRI--FEHRPRRQLVV 2782
D+DPWIRTTDF+ SGAIGRCN+YRISI PR+GAKL++A+ YLR RR+ E P+ QL V
Sbjct: 248 DDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRV 307
Query: 2781 QDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEV 2602
+DEP+FG + D FF I +KEG+ F ++FLVNA++H+GI+NQ+QLS+ FF LLR++ ++
Sbjct: 308 RDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI 367
Query: 2601 NVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYC 2422
N+ AL H+CSY+HP+FDA +RLKLV +WLLKNPKLLKS + +D EVRRLVITP+KAYC
Sbjct: 368 NIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYC 427
Query: 2421 LPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKT 2242
LPP VELSNRVLR YKEV DRFLRVTFMDEGMQ +N+++L YY A IVK ITS+S PQKT
Sbjct: 428 LPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKT 487
Query: 2241 TIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFN 2062
+FKRVK+I DGFYLCGRKYSFLAFSSNQLRD SAWFFA+DK T V +I+SWMG+F
Sbjct: 488 RVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVR--AIKSWMGKFT 545
Query: 2061 IKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQ 1882
+ VAKCAARMGQCFSSTYATV+VP +V +LPDIKRN Y FSDGIGKI PDLA+EVA+
Sbjct: 546 NRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAE 604
Query: 1881 KLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQ 1702
KL+L P AYQIRYAGCKGVV CWP + G RL RPSM KF SDHT+LE+ SWTRFQ
Sbjct: 605 KLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQ 663
Query: 1701 PGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAI 1522
PGFLNRQI+TLLSAL VPD +F KMQESM+ KLNQ+L +TDVAF+VL SC+EQGN+AAI
Sbjct: 664 PGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAI 723
Query: 1521 MLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFI 1342
MLSAGF PQTEPHL+GML+CIR+AQ L K RIFVP GRWLMGCLDELG LE GQCFI
Sbjct: 724 MLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFI 783
Query: 1341 QTSLPSLENCFAKHGSRFSWTKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVD 1162
Q S PSLENCF KHGSRFS KN+KVI G V IAKNPCLHPGD+RIL+AVD PGL HLVD
Sbjct: 784 QVSSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVD 843
Query: 1161 CLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVT 982
CLVFPQKGDRPH++EASGSDLDGDLYFVTW+E L+PPSK+SWPPM Y A K L + VT
Sbjct: 844 CLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVT 903
Query: 981 QQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSA 802
DII+FFTKNMV ENLG ICNAHVVHAD SE GALDE CL+LAE AA AVDFPKTGK
Sbjct: 904 SLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLV 963
Query: 801 TMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYD 625
T+P L+PK+YPDFMGK+EFQ+Y+S K+LG++YR+I D + D S E + + VP+D
Sbjct: 964 TLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFD 1023
Query: 624 TDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDI 445
DL IPGS F+ DAW KC+YDGQLN LLGQ+KV EEE VTGHVWSMPKY SRK G++
Sbjct: 1024 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083
Query: 444 KEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVE 265
E+LKHAY++L +EFR FE M D LTDDEKN LYEQKASAWY VTYHP WVKKS+E
Sbjct: 1084 TERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLE 1143
Query: 264 LGEPDG-DGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
L PD G V LSFAWI DYL RIKIR +G D+ KPI+SLA +L D+I
Sbjct: 1144 LQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197
>ref|XP_004291459.2| PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Fragaria vesca
subsp. vesca]
Length = 1200
Score = 1616 bits (4185), Expect = 0.0
Identities = 790/1195 (66%), Positives = 942/1195 (78%), Gaps = 3/1195 (0%)
Frame = -3
Query: 3681 QEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTS 3502
+ + VVTQ SFGGF + V+AK+L+ +LE EIGLV+RCRLKTSWTPPES P++ +S+ +
Sbjct: 8 ERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAA 67
Query: 3501 LVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRR 3322
+ +++Y KV PHAFVHF RC+L LKA+L E+ +N+RR
Sbjct: 68 DIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRR 127
Query: 3321 GTE-PFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKS 3145
T+ PFK +DVR EIG+LV DEF+V WKGP+ GVDFV+DPFD TCK F +TAFSFK
Sbjct: 128 RTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKG 187
Query: 3144 TKRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFN 2965
+ +VI CDFK EF VREI E K Y E LLL+L SSPWV YRTADD+I +V F+
Sbjct: 188 LNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFD 247
Query: 2964 LLDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLV 2785
LLDD+DPWIRTTDF+ +GAIGRCN YR+ I PR GAKL++A+ YL++RR+ E ++
Sbjct: 248 LLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPR 307
Query: 2784 VQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAE 2605
+QDEP FG + D FSIHY++ +SFDILFLVNA++H+GI+NQ+QLSE FF LLRN+ E
Sbjct: 308 IQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEE 367
Query: 2604 VNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAY 2425
+NV AL HLCSYKHP+FDASKRLKLVQEWLL+NPKL+K+ + +D AEVRRLVITPTKAY
Sbjct: 368 INVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAY 427
Query: 2424 CLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQK 2245
CLPP VELSNRVLRKYKEV DRFLRVTFMDEGMQ +NS+++ Y A IVK+IT ++ PQK
Sbjct: 428 CLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQK 487
Query: 2244 TTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRF 2065
T ++ R+++I +GF+LCGRKYSFLAFSSNQLRD SAWFFA+DK + G I++WMGRF
Sbjct: 488 TKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQG--IKNWMGRF 545
Query: 2064 NIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVA 1885
+ VAKCAARMGQCFSSTYATV+VP TQV+ +LPDI+RN YVFSDGIG+ITPDLA+EVA
Sbjct: 546 TNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVA 605
Query: 1884 QKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRF 1705
+KL+L +PP AYQIRY GCKGVV CWP + G RL LR SM KFASDHT LE+ SWTR
Sbjct: 606 EKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRL 665
Query: 1704 QPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAA 1525
QPGFLNRQI+TLLSAL VPD +F MQE+MV KL Q+L +TDVAF+VLT SC+EQGNSAA
Sbjct: 666 QPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAA 725
Query: 1524 IMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCF 1345
IMLSAGF PQTEPHLRGML+CI++AQL L KTRIFVP GRWLMGCLDELG LE GQCF
Sbjct: 726 IMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCF 785
Query: 1344 IQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHL 1168
+Q S PSLENCFAKHGSRF T KN++VI G V++AKNPCLHPGDIRIL+AVD PGLHHL
Sbjct: 786 VQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHL 845
Query: 1167 VDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKP 988
DCLVFPQKG RPHTDEASGSDLDGDLYFVTWDENL+PP K+SW PM+Y+PA K +
Sbjct: 846 HDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRS 905
Query: 987 VTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGK 808
VT QD+IEFF +NMV ENLG ICNAHVVH+D SE GA DE CL+LAELAA+AVDFPKTGK
Sbjct: 906 VTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGK 965
Query: 807 SATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVP 631
TMP L+PKLYPDFMGK ++QSYKS K+LG+LYRKI D + D S E ++P DV
Sbjct: 966 IVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVK 1025
Query: 630 YDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLG 451
YD DLE+P + F+ADAW KC+YD QL L+ Q+K+ EEE VTGHVWSMPKY SRK G
Sbjct: 1026 YDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQG 1085
Query: 450 DIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKS 271
+++E+LKH+Y+AL +EFR FE M + L DD+KN YEQKASAWY VTYHP WVKKS
Sbjct: 1086 ELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKS 1145
Query: 270 VELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
++L PDG G V LSFAWIA DYL RIKI+ + V+ D KPI+ L YLAD+I
Sbjct: 1146 LDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1200
>ref|XP_011459183.1| PREDICTED: RNA-dependent RNA polymerase 6 isoform X2 [Fragaria vesca
subsp. vesca]
Length = 1197
Score = 1616 bits (4185), Expect = 0.0
Identities = 790/1195 (66%), Positives = 942/1195 (78%), Gaps = 3/1195 (0%)
Frame = -3
Query: 3681 QEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTS 3502
+ + VVTQ SFGGF + V+AK+L+ +LE EIGLV+RCRLKTSWTPPES P++ +S+ +
Sbjct: 5 ERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDAA 64
Query: 3501 LVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRR 3322
+ +++Y KV PHAFVHF RC+L LKA+L E+ +N+RR
Sbjct: 65 DIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKRR 124
Query: 3321 GTE-PFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKS 3145
T+ PFK +DVR EIG+LV DEF+V WKGP+ GVDFV+DPFD TCK F +TAFSFK
Sbjct: 125 RTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFKG 184
Query: 3144 TKRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFN 2965
+ +VI CDFK EF VREI E K Y E LLL+L SSPWV YRTADD+I +V F+
Sbjct: 185 LNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLFD 244
Query: 2964 LLDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLV 2785
LLDD+DPWIRTTDF+ +GAIGRCN YR+ I PR GAKL++A+ YL++RR+ E ++
Sbjct: 245 LLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPR 304
Query: 2784 VQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAE 2605
+QDEP FG + D FSIHY++ +SFDILFLVNA++H+GI+NQ+QLSE FF LLRN+ E
Sbjct: 305 IQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRNQPEE 364
Query: 2604 VNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAY 2425
+NV AL HLCSYKHP+FDASKRLKLVQEWLL+NPKL+K+ + +D AEVRRLVITPTKAY
Sbjct: 365 INVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAY 424
Query: 2424 CLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQK 2245
CLPP VELSNRVLRKYKEV DRFLRVTFMDEGMQ +NS+++ Y A IVK+IT ++ PQK
Sbjct: 425 CLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITENTFPQK 484
Query: 2244 TTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRF 2065
T ++ R+++I +GF+LCGRKYSFLAFSSNQLRD SAWFFA+DK + G I++WMGRF
Sbjct: 485 TKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQG--IKNWMGRF 542
Query: 2064 NIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVA 1885
+ VAKCAARMGQCFSSTYATV+VP TQV+ +LPDI+RN YVFSDGIG+ITPDLA+EVA
Sbjct: 543 TNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLAMEVA 602
Query: 1884 QKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRF 1705
+KL+L +PP AYQIRY GCKGVV CWP + G RL LR SM KFASDHT LE+ SWTR
Sbjct: 603 EKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRL 662
Query: 1704 QPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAA 1525
QPGFLNRQI+TLLSAL VPD +F MQE+MV KL Q+L +TDVAF+VLT SC+EQGNSAA
Sbjct: 663 QPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAA 722
Query: 1524 IMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCF 1345
IMLSAGF PQTEPHLRGML+CI++AQL L KTRIFVP GRWLMGCLDELG LE GQCF
Sbjct: 723 IMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCF 782
Query: 1344 IQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHL 1168
+Q S PSLENCFAKHGSRF T KN++VI G V++AKNPCLHPGDIRIL+AVD PGLHHL
Sbjct: 783 VQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHL 842
Query: 1167 VDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKP 988
DCLVFPQKG RPHTDEASGSDLDGDLYFVTWDENL+PP K+SW PM+Y+PA K +
Sbjct: 843 HDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRS 902
Query: 987 VTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGK 808
VT QD+IEFF +NMV ENLG ICNAHVVH+D SE GA DE CL+LAELAA+AVDFPKTGK
Sbjct: 903 VTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGK 962
Query: 807 SATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVP 631
TMP L+PKLYPDFMGK ++QSYKS K+LG+LYRKI D + D S E ++P DV
Sbjct: 963 IVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVPSDVK 1022
Query: 630 YDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLG 451
YD DLE+P + F+ADAW KC+YD QL L+ Q+K+ EEE VTGHVWSMPKY SRK G
Sbjct: 1023 YDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTSRKQG 1082
Query: 450 DIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKS 271
+++E+LKH+Y+AL +EFR FE M + L DD+KN YEQKASAWY VTYHP WVKKS
Sbjct: 1083 ELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDWVKKS 1142
Query: 270 VELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
++L PDG G V LSFAWIA DYL RIKI+ + V+ D KPI+ L YLAD+I
Sbjct: 1143 LDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197
>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
gi|462422376|gb|EMJ26639.1| hypothetical protein
PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 1614 bits (4180), Expect = 0.0
Identities = 794/1190 (66%), Positives = 948/1190 (79%), Gaps = 4/1190 (0%)
Frame = -3
Query: 3663 VVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVHRSN 3484
VVTQ SFGGF + AKDL+ +LE EIGLV+RCRLKTSWTPPES+P++ + NT+ V R++
Sbjct: 11 VVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI-NTADVKRTD 69
Query: 3483 EYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRRGTE-PF 3307
+Y +V PHAFVHF A RCEL PLK +L E+ +NRRR T+ PF
Sbjct: 70 DYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRRRRTKTPF 129
Query: 3306 KFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKRQSV 3127
K SDV EIG+LV +DEF+ W+GP GVDF++DPFD TCK F+ +TAFSFK TK+ +V
Sbjct: 130 KLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAV 189
Query: 3126 IKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLDDED 2947
IKCDFKVEFLVREI E+K Y + + +LL+L+SSPWV YRTADD+I +VPF+LLDD+D
Sbjct: 190 IKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDD 249
Query: 2946 PWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQDEPE 2767
PWIRTTDF+ SGAIGRCN+YR+ I PR GAKL++A+ YLR+RR+ E + +QDEP+
Sbjct: 250 PWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPKIQDEPD 309
Query: 2766 FGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVNVTAL 2587
FG S + FFSI Y+EG+SF+I+FLVNA++H+G VNQ+QLS+ FF LLR++ E+NV AL
Sbjct: 310 FGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAAL 369
Query: 2586 GHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCLPPVV 2407
HLCSY+ P+FDA +RLK+VQ+WLLKNPKL+K + +D AEVRRLVITPTKAYCLPP V
Sbjct: 370 KHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEV 429
Query: 2406 ELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTTIFKR 2227
ELSNRVLRKYKEV DRFLRVTFMDEGMQ++NS++L YY A IVK+ITS+S QKT +FKR
Sbjct: 430 ELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKR 489
Query: 2226 VKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNIKIVA 2047
++I NDGFYLCGRKY+FLAFSSNQLRD SAWFFA+ ++ I SWMG+FN K VA
Sbjct: 490 FRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAE--CVNISVGKITSWMGKFNNKNVA 547
Query: 2046 KCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQKLQLT 1867
KCAARMGQCFSSTYATV+V ++V+ D+PDIKRN YVFSDGIG ITPDLALEVA+KL+L
Sbjct: 548 KCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLALEVAEKLKLD 606
Query: 1866 LNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQPGFLN 1687
NPPCAYQIR+AGCKGVV CWP G RL LR SM KF S HT LE+ SWTR+QPGFLN
Sbjct: 607 RNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLN 666
Query: 1686 RQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIMLSAG 1507
RQI+TLLS L V D +F +MQE MV KLNQ+L +TDVAF+VLT SC+EQGN+AAIMLSAG
Sbjct: 667 RQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAG 726
Query: 1506 FNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQTSLP 1327
F PQTEPHLRGML+CI++AQL L K RIFV GRWLMG LDELG LE GQCF+Q S P
Sbjct: 727 FKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTP 786
Query: 1326 SLENCFAKHGSRFSW-TKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVDCLVF 1150
LE+CFAKHGS F+ +N++VI G V+IAKNPCLHPGDIRIL+AVD PGLHHL DCLVF
Sbjct: 787 LLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 846
Query: 1149 PQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVTQQDI 970
PQKGDRPHTDEASGSDLDGDLYFVTWDENL+PPSK+SW PM Y PA K +PVTQQDI
Sbjct: 847 PQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQDI 906
Query: 969 IEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSATMPY 790
I+FF KNM ENLG ICNAHVVHAD S+ GALD CL+LAELAA+AVDFPKTGK ++P
Sbjct: 907 IDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSLPQ 966
Query: 789 SLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYDTDLE 613
L+P+LYPDF+GK++ QSYKS K+LG+LYRK+ D + D S E+ Y P D+PYD DLE
Sbjct: 967 HLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLE 1026
Query: 612 IPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDIKEKL 433
+PG+ FV DAW KC+YDGQL L+GQ+KV EEE VTGHVWS+PK NS+K G++KE+L
Sbjct: 1027 VPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERL 1086
Query: 432 KHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVELGEP 253
H+Y AL +EFR FE + + + LTDDEKNLL E+KASAWY VTYHP+WVK+S L EP
Sbjct: 1087 SHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEP 1146
Query: 252 DGDG-VPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
DG G V V LSFAWIA DYL RIKI+C GV D+ KPI+SL YLAD+I
Sbjct: 1147 DGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196
>ref|XP_008219491.1| PREDICTED: RNA-dependent RNA polymerase 6 [Prunus mume]
Length = 1196
Score = 1614 bits (4179), Expect = 0.0
Identities = 789/1190 (66%), Positives = 954/1190 (80%), Gaps = 4/1190 (0%)
Frame = -3
Query: 3663 VVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVHRSN 3484
VVTQ SFGGF + V AKDL+ +LE EIG+V+RCRLKTSWTPPES+P++ + NT+ V R++
Sbjct: 11 VVTQVSFGGFQHHVRAKDLVTYLEDEIGVVYRCRLKTSWTPPESFPNFEI-NTADVKRTD 69
Query: 3483 EYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRRGTE-PF 3307
+Y +V PHAFVHF A RCEL + PLK ++ E+ +NRRR T+ PF
Sbjct: 70 DYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFLNNEPLKVSMGLENPYFLNRRRRTKTPF 129
Query: 3306 KFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKRQSV 3127
K SDV EIG+LV +DEF+V W+GP GVDF++DPFD TCK F+ +TAFSFK TK+ +V
Sbjct: 130 KLSDVHVEIGSLVRQDEFFVSWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFKGTKKHAV 189
Query: 3126 IKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLDDED 2947
IKCDFKVEFLVREI E+K Y + + +LL+L+SSPWV YRTADD+I +VPF+LLDD+D
Sbjct: 190 IKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPFDLLDDDD 249
Query: 2946 PWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQDEPE 2767
PWIRTTDF+ SGAIGRCN+YR+ I PR GAKL++A+ YLR+RR+ E + +QDEP+
Sbjct: 250 PWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPPRIQDEPD 309
Query: 2766 FGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVNVTAL 2587
FG S + FFSI Y+E +SF+I+FLVNA++H+G VNQ+QLS+ FF LLR++ E+NV AL
Sbjct: 310 FGMSNTEPFFSIQYEEDISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAAL 369
Query: 2586 GHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCLPPVV 2407
HLCSY++P+FDA +RLK+VQ+WLLKNPKL+K + +D EVRRLVITPTKAYCLPP V
Sbjct: 370 KHLCSYRNPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIVEVRRLVITPTKAYCLPPEV 429
Query: 2406 ELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTTIFKR 2227
ELSNRVLRKYKEV DRFLRVTFMDEGMQ++NS++L YY A IVK+ITS+S QKT +FKR
Sbjct: 430 ELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKR 489
Query: 2226 VKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNIKIVA 2047
++I NDGFYLCGRKY+FLAFSSNQLRD SAWFFA+ ++ I SWMG+FN K VA
Sbjct: 490 FRNILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAE--CVNISVGKITSWMGKFNNKNVA 547
Query: 2046 KCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQKLQLT 1867
KCAARMGQCFSSTYATV+VP ++V+ D+PDI+RN Y+FSDGIG ITPDLALEVA+KL+L
Sbjct: 548 KCAARMGQCFSSTYATVEVPSSEVN-DIPDIERNGYIFSDGIGMITPDLALEVAEKLKLD 606
Query: 1866 LNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQPGFLN 1687
NPPCAYQIR+AGCKGVV CWP RL LR SM KF S H LE+ SWTR+QPGFLN
Sbjct: 607 RNPPCAYQIRFAGCKGVVACWPSKGDRFRLSLRTSMNKFESKHATLEICSWTRYQPGFLN 666
Query: 1686 RQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIMLSAG 1507
RQI+TLLS L V D +F +MQE MV KLNQ+L +TDVAF+VLT+SC+EQGN+AAIMLSAG
Sbjct: 667 RQIITLLSTLKVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTSSCAEQGNAAAIMLSAG 726
Query: 1506 FNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQTSLP 1327
F PQTEPHLRGML+CI++AQL L K RIFV GRWLMG LDELG LE GQCF+Q S P
Sbjct: 727 FKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTP 786
Query: 1326 SLENCFAKHGSRFSW-TKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVDCLVF 1150
SLE+CFAKHGS F+ +N++VI G V+IAKNPCLHPGDIRIL+AVD PGLHHL DCLVF
Sbjct: 787 SLESCFAKHGSSFAQIERNLQVIKGYVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVF 846
Query: 1149 PQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVTQQDI 970
PQKGDRPHTDEASGSDLDGDLYFVTWDENL+PPSK+SW PM Y PA K +PVTQQDI
Sbjct: 847 PQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKRQGRPVTQQDI 906
Query: 969 IEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSATMPY 790
I+FF KNM ENLG ICNAHVVHAD S+ GALDE CL+LAELAA+AVDFPKTGK T+P
Sbjct: 907 IDFFVKNMTNENLGPICNAHVVHADRSDYGALDENCLKLAELAALAVDFPKTGKIVTLPQ 966
Query: 789 SLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYDTDLE 613
L+P+LYPDF+GK++ QSYKS K+LG+LYRK+ D + D + E+ Y+P D+PYD DLE
Sbjct: 967 HLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATTSELHYVPSDIPYDMDLE 1026
Query: 612 IPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDIKEKL 433
+PG+ F+ DAW KC+YDGQL L+GQ+KV EEE VTGHVWS+PK NS+K G++KE+L
Sbjct: 1027 VPGAADFIFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERL 1086
Query: 432 KHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVELGEP 253
H+Y AL +EFR FE + + + LTDDEKN+L E+KASAWY VTYHP+WVK+S L EP
Sbjct: 1087 SHSYNALKKEFRQMFENLDSNLEALTDDEKNILCEKKASAWYQVTYHPKWVKQSPPLQEP 1146
Query: 252 DGDG-VPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
DG G V V LSFAWIA DYL RIKI+C+GV D+ KPI+SL YLAD+I
Sbjct: 1147 DGPGDVVVMLSFAWIAADYLARIKIKCRGVEHIDSTKPINSLKRYLADRI 1196
>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
6 [Theobroma cacao]
Length = 1197
Score = 1609 bits (4167), Expect = 0.0
Identities = 789/1192 (66%), Positives = 941/1192 (78%), Gaps = 3/1192 (0%)
Frame = -3
Query: 3672 KEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVH 3493
K+ VVTQ S GGF V+AKDL+E+ + E+G+VWRCRLKTSWTPPESYP++ + +++++
Sbjct: 8 KDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILDSTVIQ 67
Query: 3492 RSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRR-GT 3316
R+++Y+KV PHAFVHF A R EL+ LK +L E+ +NRRR T
Sbjct: 68 RTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNRRRRNT 127
Query: 3315 EPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKR 3136
PFK SDV +IG +V+RDEF+VGW+GP GVDF++DPFD TCK FS +TAFSFK T
Sbjct: 128 TPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSFKGTTE 187
Query: 3135 QSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLD 2956
+VIKCDFKVEFLVR+I E+K Y E +G + LQL+SSP V+YRTADD I ++VPF+LLD
Sbjct: 188 YAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVPFDLLD 247
Query: 2955 DEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQD 2776
D+D WIRTTDF+ SGAIGRCNTYR+ I PR GAKL++AL YLR++R+ R L + D
Sbjct: 248 DDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWPLRISD 307
Query: 2775 EPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVNV 2596
EP+FG S+ D F+ I YKEG+ F+I+FLVNA++H+GI NQ+QLSEDFF LLR++ EVNV
Sbjct: 308 EPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNV 367
Query: 2595 TALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCLP 2416
AL H+ SY+ P+FDA KRLK V +WLL+NP L KS + +D E+RRLVITPTKA+CL
Sbjct: 368 AALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLL 427
Query: 2415 PVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTTI 2236
P VELSNRVLRKYKEV DRFLRVTFMDEGMQ +N+++LTYY A IV+D+TS QKT +
Sbjct: 428 PEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGV 487
Query: 2235 FKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNIK 2056
FKRV+SI DGFYLCGRKYSFLAFS+NQLRDSSAWFFA+D T V I WMG+F +
Sbjct: 488 FKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSV--LQILRWMGKFTNR 545
Query: 2055 IVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQKL 1876
+AKCAARMGQCFSSTYATV+VP T+V+P LPDI+RN YVFSDGIGKITPDLA EVAQKL
Sbjct: 546 NIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKL 605
Query: 1875 QLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQPG 1696
+L LNPPCAYQIRYAGCKGVV CWP G RL LR SM KF SDHT LE+ SWTRFQPG
Sbjct: 606 KLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPG 665
Query: 1695 FLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIML 1516
FLNRQI+TLLS VPD VF +MQ +MV KLN+IL +TDVAFEVLT+SCSEQGN+AAIML
Sbjct: 666 FLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIML 725
Query: 1515 SAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQT 1336
SAGF PQTEPHLRG+L+C+R++QL L K RIFVP GRWLMG LDELG LE GQCFIQ
Sbjct: 726 SAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQV 785
Query: 1335 SLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVDC 1159
S PS+ENCF KHGSRF+ T KN +VI G V+IAKNPCLHPGDIRIL+AVD PGLHHL DC
Sbjct: 786 SNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDC 845
Query: 1158 LVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVTQ 979
LVFPQKG+RPHT+EASGSDLDGDLYFVTW++ L+PP K+SWPPM Y P KE+++ V
Sbjct: 846 LVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNH 905
Query: 978 QDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSAT 799
+DII+FF KNMV E+LG ICNAHVVHADLSE GALDEKC+ LAELAA AVDFPKTGK +
Sbjct: 906 KDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVS 965
Query: 798 MPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYDT 622
MP +L+PKLYPDFMGK+E+QSYKS+K+LG+LYR I D + D S E+ D+ YDT
Sbjct: 966 MPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDT 1025
Query: 621 DLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDIK 442
DLE+ GS ++ DAW KC+YD QL LLGQ+KV EEE VTGH+WSMPKY SRKLGD+K
Sbjct: 1026 DLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLK 1085
Query: 441 EKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVEL 262
EKL H+Y AL +EFR FE+M + + L +DE+N LYE+KASAWY VTYHP+WV+K +EL
Sbjct: 1086 EKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLEL 1145
Query: 261 GEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
+ DG V LSFAWIA DYL RIKIR QG D KP++SL YLADKI
Sbjct: 1146 QKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 1603 bits (4152), Expect = 0.0
Identities = 788/1192 (66%), Positives = 947/1192 (79%), Gaps = 3/1192 (0%)
Frame = -3
Query: 3672 KEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVH 3493
K +V Q SFGGFD V A +L+++LE E+G VWRCRLKTS TP ESYPD++V+NT+ V
Sbjct: 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNTAEVR 67
Query: 3492 RSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRR-RGT 3316
++++YEKV PHAFVHF A R EL + G LK +L E+ R+N+R R +
Sbjct: 68 KTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQRGRTS 127
Query: 3315 EPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKR 3136
PFK DV EIGTLV+RDEF+V W+GP SG DF++DPFD TCK F+ + AF+ KS+
Sbjct: 128 TPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTE 187
Query: 3135 QSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLD 2956
+VIKC+FKVEFLVREI +K Y E + A+LLQL+SSP V+YRTADD+I VPF++LD
Sbjct: 188 HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLD 247
Query: 2955 DEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQD 2776
D+DPWIRTTDF+ SGAIGRCN+YRISIS R KL + + YL +RR+ R + +++
Sbjct: 248 DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIRE 307
Query: 2775 EPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVNV 2596
EP+F + D FF IHY+EG+SF+I+FLVNA++H+GI+NQ+QLS+ FF LLR ++ EVNV
Sbjct: 308 EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV 367
Query: 2595 TALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCLP 2416
AL H+ SYK P+FDA KRLKLVQEWLLK+P+L K + +D EVRRLVITPTKAYCLP
Sbjct: 368 AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLP 427
Query: 2415 PVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTTI 2236
P VELSNRVLRKYK++ DRFLRVTFMDEG+Q +N+++L+Y+ A IV+DIT +S QKT +
Sbjct: 428 PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
Query: 2235 FKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNIK 2056
FKRV+SI + GFYLCGRK+SFLAFSS+QLRD SAWFF++D T V I+ WMGRF K
Sbjct: 488 FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL--DIKKWMGRFTDK 545
Query: 2055 IVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQKL 1876
+AKCAARMGQCFSSTYATV+VP T+VDP+LPDIKRN YVFSDGIGKITPDLA+EVAQKL
Sbjct: 546 NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL 605
Query: 1875 QLTLNPP-CAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQP 1699
+L +NPP CAYQIRYAGCKGVV CWP G R+ LR SM KF S HT LE+ SWTRFQP
Sbjct: 606 KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQP 665
Query: 1698 GFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIM 1519
GFLNRQI+TLLS L VPD +F MQ+SM+ KLNQ+L ++DVAFEVLT +C+EQGN+AAIM
Sbjct: 666 GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM 725
Query: 1518 LSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQ 1339
LSAGFNPQTEPHLRGML+CIR+AQL L K RIFVP GRWLMGCLDELG LE GQCFIQ
Sbjct: 726 LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
Query: 1338 TSLPSLENCFAKHGSRFSWTKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVDC 1159
S P L NCF+KHGSRF+ TK ++VI G V+IAKNPCLHPGDIRIL+AVD P LHHL DC
Sbjct: 786 VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
Query: 1158 LVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVTQ 979
LVFPQKGDRPHT+EASGSDLDGDLYFVTWDENL+PPSK+SWPPM+Y A K L +PV Q
Sbjct: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
Query: 978 QDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSAT 799
+DIIEFF K+MV ENLG ICNAHVVHAD SE GALDE C+ LAELAA AVDFPKTGK T
Sbjct: 906 RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
Query: 798 MPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYDT 622
MP L+PKLYPDFMGK+ +QSYKS K+LG+LYR+ D + D S EV P D+ YDT
Sbjct: 966 MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDT 1025
Query: 621 DLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDIK 442
DLE+P S F+ADAW+ KC+YDGQLN LL Q+KV+ EEE VTGH+WSMPKYNSRK G++K
Sbjct: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELK 1085
Query: 441 EKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVEL 262
E+LKH+Y+AL +EFR FE M D ++L++DEKN L+E+KASAWY VTYHP WVKKS++L
Sbjct: 1086 ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDL 1145
Query: 261 GEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
E D V LSFAWIA DYL RIKIRC+ + DT KP++ LA Y+AD+I
Sbjct: 1146 QEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
>gb|KDO61726.1| hypothetical protein CISIN_1g041430mg [Citrus sinensis]
Length = 1197
Score = 1602 bits (4149), Expect = 0.0
Identities = 788/1192 (66%), Positives = 946/1192 (79%), Gaps = 3/1192 (0%)
Frame = -3
Query: 3672 KEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVH 3493
K +V Q SFGGFD V A +L+++LE E+G VWRCRLKTS TP ESYPD+ V+NT+ V
Sbjct: 8 KLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFYVTNTAEVR 67
Query: 3492 RSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRR-RGT 3316
++++YEKV PHAFVHF A R EL + G LK +L E+ R+N+R R +
Sbjct: 68 KTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGRALKVSLGPENPFRLNQRGRTS 127
Query: 3315 EPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKR 3136
PFK DV EIGTLV+RDEF+V W+GP SG DF++DPFD TCK F+ + AF+ KS+
Sbjct: 128 TPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALKSSTE 187
Query: 3135 QSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLD 2956
+VIKC+FKVEFLVREI +K Y E + A+LLQL+SSP V+YRTADD+I VPF++LD
Sbjct: 188 HAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPFDMLD 247
Query: 2955 DEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQD 2776
D+DPWIRTTDF+ SGAIGRCN+YRISIS R KL + + YL +RR+ R + +++
Sbjct: 248 DDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPITIRE 307
Query: 2775 EPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVNV 2596
EP+F + D FF IHY+EG+SF+I+FLVNA++H+GI+NQ+QLS+ FF LLR ++ EVNV
Sbjct: 308 EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV 367
Query: 2595 TALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCLP 2416
AL H+ SYK P+FDA KRLKLVQEWLLK+P+L K + +D EVRRLVITPTKAYCLP
Sbjct: 368 AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLP 427
Query: 2415 PVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTTI 2236
P VELSNRVLRKYK++ DRFLRVTFMDEG+Q +N+++L+Y+ A IV+DIT +S QKT +
Sbjct: 428 PEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRV 487
Query: 2235 FKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNIK 2056
FKRV+SI + GFYLCGRK+SFLAFSS+QLRD SAWFF++D T V I+ WMGRF K
Sbjct: 488 FKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVL--DIKKWMGRFTDK 545
Query: 2055 IVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQKL 1876
+AKCAARMGQCFSSTYATV+VP T+VDP+LPDIKRN YVFSDGIGKITPDLA+EVAQKL
Sbjct: 546 NIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKL 605
Query: 1875 QLTLNPP-CAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQP 1699
+L +NPP CAYQIRYAGCKGVV CWP G R+ LR SM KF S HT LE+ SWTRFQP
Sbjct: 606 KLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQP 665
Query: 1698 GFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIM 1519
GFLNRQI+TLLS L VPD +F MQ+SM+ KLNQ+L ++DVAFEVLT +C+EQGN+AAIM
Sbjct: 666 GFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIM 725
Query: 1518 LSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQ 1339
LSAGFNPQTEPHLRGML+CIR+AQL L K RIFVP GRWLMGCLDELG LE GQCFIQ
Sbjct: 726 LSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQ 785
Query: 1338 TSLPSLENCFAKHGSRFSWTKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVDC 1159
S P L NCF+KHGSRF+ TK ++VI G V+IAKNPCLHPGDIRIL+AVD P LHHL DC
Sbjct: 786 VSEPFLGNCFSKHGSRFAETKKLQVIKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDC 845
Query: 1158 LVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVTQ 979
LVFPQKGDRPHT+EASGSDLDGDLYFVTWDENL+PPSK+SWPPM+Y A K L +PV Q
Sbjct: 846 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQ 905
Query: 978 QDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSAT 799
+DIIEFF K+MV ENLG ICNAHVVHAD SE GALDE C+ LAELAA AVDFPKTGK T
Sbjct: 906 RDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDFPKTGKIVT 965
Query: 798 MPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYDT 622
MP L+PKLYPDFMGK+ +QSYKS K+LG+LYR+ D + D S EV P D+ YDT
Sbjct: 966 MPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDT 1025
Query: 621 DLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDIK 442
DLE+P S F+ADAW+ KC+YDGQLN LL Q+KV+ EEE VTGH+WSMPKYNSRK G++K
Sbjct: 1026 DLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELK 1085
Query: 441 EKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVEL 262
E+LKH+Y+AL +EFR FE M D ++L++DEKN L+E+KASAWY VTYHP WVKKS++L
Sbjct: 1086 ERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDL 1145
Query: 261 GEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
E D V LSFAWIA DYL RIKIRC+ + DT KP++ LA Y+AD+I
Sbjct: 1146 QEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 1587 bits (4109), Expect = 0.0
Identities = 789/1200 (65%), Positives = 933/1200 (77%), Gaps = 3/1200 (0%)
Frame = -3
Query: 3696 LEGTLQEAKEIVVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYT 3517
LEG++ KE VVTQ S GGFD V A+DL+++LE E+GLVWRCRLKTSWTPPESYP++
Sbjct: 3 LEGSV---KETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFE 59
Query: 3516 VSNTSLVHRSNEYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLR 3337
+++T+++ R + Y+KV PHAFVHF A R EL LK +L E+
Sbjct: 60 ITDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYY 119
Query: 3336 VNRRR-GTEPFKFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETA 3160
+NRRR T PFK DV EIGTL + DEF VGW+GP SGV+F++DPFD TCK FS +TA
Sbjct: 120 LNRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTA 179
Query: 3159 FSFKSTKRQSVIKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHD 2980
FSFK T +VIKCDFKVEFLVREI E+K Y E G +LLQL+SSPWV+YRTADD+
Sbjct: 180 FSFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEK 239
Query: 2979 TVPFNLLDDEDPWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRP 2800
TVPF LLDD+D WIRTTDF+ SGAIGRCNTYR+ + PR G KL++A+ YLR+RR+
Sbjct: 240 TVPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDL 299
Query: 2799 RRQLVVQDEPEFGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLR 2620
R QL ++DEP+FG S+ D F+ I YKEG+ F+I+FLVNA+LH+GI NQ+QLS DFF LLR
Sbjct: 300 RSQLRIRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLR 358
Query: 2619 NETAEVNVTALGHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVIT 2440
N++ EVNV AL H+ SY+HP++DA +RLK V +WLLKNPKL KS +D E+RRLVIT
Sbjct: 359 NQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVIT 418
Query: 2439 PTKAYCLPPVVELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSH 2260
PTKAYCL P VELSNRVLRKYK+V DRFLRVTFMDEGMQ +N+++LTYY A IV+D+TS
Sbjct: 419 PTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTST 478
Query: 2259 SIPQKTTIFKRVKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRS 2080
S QKT +FKRVKSI DGFYLCGRKYSFLAFS+NQLRD +AWFFA+D V I
Sbjct: 479 SFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVL--QIIG 536
Query: 2079 WMGRFNIKIVAKCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDL 1900
WMG+F + +AKCAARMGQCFSSTYATV+VP QV+ LPDIKRN Y FSDGIGKITPDL
Sbjct: 537 WMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDL 596
Query: 1899 ALEVAQKLQLTLNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVV 1720
A+EVAQKL+L LNPPCAYQIRYAGCKGVV CWP RL LR SM KF S HT LE+
Sbjct: 597 AMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEIC 656
Query: 1719 SWTRFQPGFLNRQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQ 1540
SWTRFQPGFLNRQI+TLLS LGVPD VF MQ SMV KL+++L +TD AFEV+ +SC EQ
Sbjct: 657 SWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQ 716
Query: 1539 GNSAAIMLSAGFNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELE 1360
G++ AIMLSAGF PQTEPHLRGML+C+R++QL L K+RIF+ GRWLMG LDELG LE
Sbjct: 717 GHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLE 776
Query: 1359 HGQCFIQTSLPSLENCFAKHGSRFSWT-KNVKVITGKVIIAKNPCLHPGDIRILDAVDVP 1183
GQCFIQ S PSL+NCF KHGSRF+ T KN +VI G V+IAKNPCLHPGDIRIL+AVD P
Sbjct: 777 QGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAP 836
Query: 1182 GLHHLVDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVK 1003
GLHHL DCLVFPQKG+RPHT+EASGSDLDGDLYFVTW+E L+PPSK+S PM Y A +
Sbjct: 837 GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPR 896
Query: 1002 ELKKPVTQQDIIEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDF 823
EL + VT +DIIEFF+KNMV E+LG ICNAHVVH+DLSE GA DEKC+ LAELAAIAVDF
Sbjct: 897 ELNRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDF 956
Query: 822 PKTGKSATMPYSLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYL 646
PKTGK +MP L+PKLYPDFMGK+EFQSYKS K+LG+LYR I D + D S E+ +
Sbjct: 957 PKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFG 1016
Query: 645 PEDVPYDTDLEIPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYN 466
D+ YD DLEI GS ++ DAW+ KC+YDGQL LL Q+KV EEE VTG +WSMPKY
Sbjct: 1017 ASDINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYA 1076
Query: 465 SRKLGDIKEKLKHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPR 286
S+KLGD+KEKL H+Y +L +EFR FE M + + L +DEKN LYE+KASAWY VTYHP
Sbjct: 1077 SKKLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPE 1136
Query: 285 WVKKSVELGEPDGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
WV+K +E +PDGD V LSFAWIA DYL RIK+R QG D KP++SL YLAD+I
Sbjct: 1137 WVQKKLEFQKPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196
>ref|XP_008394093.1| PREDICTED: RNA-dependent RNA polymerase 6 [Malus domestica]
gi|658003179|ref|XP_008394094.1| PREDICTED: RNA-dependent
RNA polymerase 6 [Malus domestica]
Length = 1197
Score = 1582 bits (4097), Expect = 0.0
Identities = 774/1189 (65%), Positives = 931/1189 (78%), Gaps = 3/1189 (0%)
Frame = -3
Query: 3663 VVTQASFGGFDNQVSAKDLIEFLEKEIGLVWRCRLKTSWTPPESYPDYTVSNTSLVHRSN 3484
VVTQ SFGGF V A DL+ +LE EIGLV+RCRLKTSWTP ES+P++ + + S + R+N
Sbjct: 11 VVTQLSFGGFGRHVKASDLVTYLEDEIGLVYRCRLKTSWTPQESFPNFELIDPSNIARTN 70
Query: 3483 EYEKVVPHAFVHFXXXXXXXXXXXXASRCELIMKGCPLKANLVTESSLRVNRRRGTE-PF 3307
+Y V PHAFVHF A R +L PLK +L E+ +NRRR + PF
Sbjct: 71 DYIMVEPHAFVHFAMPESVTFAMDAAGRSQLFYNNEPLKVSLGPENPYFLNRRRRDKTPF 130
Query: 3306 KFSDVRAEIGTLVTRDEFWVGWKGPNSGVDFVLDPFDSTCKILFSNETAFSFKSTKRQSV 3127
K SDV +IG+LV +DEF+V W+GP GVDF++DPFD TCK F+ +TAFSFK K+ +V
Sbjct: 131 KLSDVCVDIGSLVRQDEFFVAWRGPTYGVDFIVDPFDGTCKFCFTRDTAFSFKGIKKHAV 190
Query: 3126 IKCDFKVEFLVREIREMKLYKERAGPALLLQLSSSPWVYYRTADDNIHDTVPFNLLDDED 2947
IKCDF VEFLVR++ E+K Y + A +LL+L+SSPWV YRTADD+I +VPFNLLDD+D
Sbjct: 191 IKCDFMVEFLVRDVSEIKQYTDTAYHVILLRLASSPWVSYRTADDDIDQSVPFNLLDDDD 250
Query: 2946 PWIRTTDFSCSGAIGRCNTYRISISPRFGAKLERALAYLRDRRIFEHRPRRQLVVQDEPE 2767
PWIRTTDF+ SGAIGRCN YR+SI PR GAKL+R + YLR+ R+ E +R VQ+EP+
Sbjct: 251 PWIRTTDFTPSGAIGRCNCYRVSIPPRHGAKLKRTMDYLREHRVREVCLKRPPKVQNEPD 310
Query: 2766 FGASLEDTFFSIHYKEGVSFDILFLVNALLHRGIVNQYQLSEDFFGLLRNETAEVNVTAL 2587
FG D FF IHYK+ +SF+I+FLVNA++H+GI NQ+QLS+ FF LLR++ EVNV AL
Sbjct: 311 FGMPASDPFFCIHYKDDISFEIMFLVNAVMHKGIFNQHQLSDSFFDLLRSQPKEVNVAAL 370
Query: 2586 GHLCSYKHPIFDASKRLKLVQEWLLKNPKLLKSNRVSEDNAEVRRLVITPTKAYCLPPVV 2407
HLC+YKHP FDA KRLK+VQ+WLLKNPKL K + +D +EVRRL+ITPTKAYCLPP V
Sbjct: 371 KHLCTYKHPEFDACKRLKVVQDWLLKNPKLFKDPKRLDDISEVRRLIITPTKAYCLPPEV 430
Query: 2406 ELSNRVLRKYKEVMDRFLRVTFMDEGMQQLNSSLLTYYPAFIVKDITSHSIPQKTTIFKR 2227
ELSNRVLRKYKEV DRFLRVTFMDEGMQ +NS +L Y A IVK+I +++ PQKT +FKR
Sbjct: 431 ELSNRVLRKYKEVADRFLRVTFMDEGMQTINSHVLNSYVAPIVKEIMTNASPQKTNVFKR 490
Query: 2226 VKSICNDGFYLCGRKYSFLAFSSNQLRDSSAWFFADDKITGVTGTSIRSWMGRFNIKIVA 2047
VK+I DGFYLC RKYSFLAFSSNQL+D SAWFFA+D + I+ WMG+F K +A
Sbjct: 491 VKTILTDGFYLCSRKYSFLAFSSNQLKDRSAWFFAED--MNIAILDIKKWMGKFANKNIA 548
Query: 2046 KCAARMGQCFSSTYATVDVPFTQVDPDLPDIKRNDYVFSDGIGKITPDLALEVAQKLQLT 1867
KCAARMG CFSSTYATVDVP ++V+ DLPDIKRN+Y FSDGIGKITPDLA++VA+KL+L
Sbjct: 549 KCAARMGLCFSSTYATVDVPLSEVNFDLPDIKRNEYDFSDGIGKITPDLAMKVAEKLKLD 608
Query: 1866 LNPPCAYQIRYAGCKGVVTCWPGSDMGARLFLRPSMTKFASDHTVLEVVSWTRFQPGFLN 1687
+PPCAYQIRYAGCKGVV CWP + G RL LRPSM KF S HT+LE+ SWTR QPGFLN
Sbjct: 609 RDPPCAYQIRYAGCKGVVACWPSNGDGYRLSLRPSMNKFKSCHTILEICSWTRLQPGFLN 668
Query: 1686 RQILTLLSALGVPDIVFLKMQESMVCKLNQILENTDVAFEVLTTSCSEQGNSAAIMLSAG 1507
RQI+TLLSAL VPD +F + QE MV KLN++L +TDVAF+VLT SC+EQGN+AAIMLSAG
Sbjct: 669 RQIITLLSALDVPDEIFWRKQERMVLKLNRMLVDTDVAFDVLTGSCAEQGNAAAIMLSAG 728
Query: 1506 FNPQTEPHLRGMLSCIRSAQLVDLSAKTRIFVPMGRWLMGCLDELGELEHGQCFIQTSLP 1327
F PQTEPHLRGML+CIR+AQL L K RIFVP GRWLMGCLDELG LE GQCF+Q S P
Sbjct: 729 FKPQTEPHLRGMLTCIRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFVQVSTP 788
Query: 1326 SLENCFAKHGSRF-SWTKNVKVITGKVIIAKNPCLHPGDIRILDAVDVPGLHHLVDCLVF 1150
SL+NCFA HGSRF KN++VI G V+IAKNPCLHPGDIRIL+AVD P L HL DC++F
Sbjct: 789 SLQNCFANHGSRFDKIEKNLQVIKGLVVIAKNPCLHPGDIRILEAVDAPELRHLHDCILF 848
Query: 1149 PQKGDRPHTDEASGSDLDGDLYFVTWDENLVPPSKRSWPPMDYKPAAVKELKKPVTQQDI 970
PQKGDRPHT+EASGSDLDGDLYFVTWDE+L+PPSK+SW PM Y P K +P+TQ DI
Sbjct: 849 PQKGDRPHTNEASGSDLDGDLYFVTWDEDLIPPSKKSWTPMMYDPQEAKPHGRPITQMDI 908
Query: 969 IEFFTKNMVTENLGVICNAHVVHADLSEQGALDEKCLELAELAAIAVDFPKTGKSATMPY 790
I F KNMV ENLG ICNAHVVHAD S+ GA+DE CL LAE AA+AVDFPKTGK+ +P
Sbjct: 909 INFXXKNMVNENLGAICNAHVVHADRSDYGAMDENCLLLAEYAALAVDFPKTGKTVALPA 968
Query: 789 SLRPKLYPDFMGKDEFQSYKSKKVLGQLYRKIID-FQGDNEGSEEVTYLPEDVPYDTDLE 613
L+PK+YPDFMGK+E Q+YKS K+LG+LYR I D + + S E+ Y P D+PYD DLE
Sbjct: 969 HLKPKMYPDFMGKEEHQTYKSTKILGRLYRHIRDAYDEEMATSLELNYTPGDIPYDMDLE 1028
Query: 612 IPGSDYFVADAWSSKCTYDGQLNALLGQFKVSTEEEAVTGHVWSMPKYNSRKLGDIKEKL 433
IPG+ F+ADAW KC+YDGQ+ L+GQ+KV EEE VTGHVWS+PK NS+K G++KE+L
Sbjct: 1029 IPGATDFIADAWEKKCSYDGQVKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERL 1088
Query: 432 KHAYTALHREFRHSFEAMGPDSKMLTDDEKNLLYEQKASAWYCVTYHPRWVKKSVELGEP 253
K +Y AL +EFR FE P+ + LTDDEK++LYEQKASAWY VTYHP+WVK+S+ L EP
Sbjct: 1089 KQSYGALKKEFRLIFENRDPNIESLTDDEKSILYEQKASAWYQVTYHPKWVKRSIHLQEP 1148
Query: 252 DGDGVPVRLSFAWIAVDYLVRIKIRCQGVNKFDTCKPIDSLANYLADKI 106
D G LSFAWI DYL RIKI+ +GV D+ KPI+SL+ YLAD++
Sbjct: 1149 DVAGNVAMLSFAWITADYLARIKIKRRGVEHIDSPKPINSLSKYLADRM 1197