BLASTX nr result
ID: Cinnamomum23_contig00051935
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00051935
(1601 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009109559.1| RNA-dependent RNA polymerase [Macrophomina p... 151 1e-33
emb|CDJ82925.1| RNA-dependent RNA polymerase domain containing p... 149 6e-33
ref|NP_620033.1| 195K protein [Pepper ringspot virus] gi|401790|... 144 2e-31
ref|XP_007799255.1| putative replicase readthrough protein [Euty... 141 2e-30
gb|AGL80610.1| RNA-dependent RNA polymerase, partial [Plum bark ... 139 6e-30
ref|YP_001552324.1| RNA-dependent RNA polymerase [Plum bark necr... 139 6e-30
emb|CDM63857.1| polyprotein [Plum bark necrosis stem pitting-ass... 139 8e-30
gb|AIH06928.1| RNA-dependent RNA polymerase, partial [Plum bark ... 138 1e-29
gb|AGL80617.1| RNA-dependent RNA polymerase, partial [Plum bark ... 137 3e-29
ref|YP_004901701.1| polymerase [Blueberry necrotic ring blotch v... 135 7e-29
ref|NP_620047.1| replicase [Peanut clump virus] gi|334350865|sp|... 134 2e-28
gb|AFI24693.1| hypothetical protein 1, partial [Loreto virus] 134 3e-28
gb|AFI24690.1| hypothetical protein 1 [Loreto virus] 134 3e-28
gb|AFI24687.1| hypothetical protein 1, partial [Loreto virus] 134 3e-28
gb|AGE45915.1| RNA-dependent RNA polymerase, partial [Grapevine ... 133 3e-28
emb|CCV01575.2| polymerase [Negev-like virus #174] 132 6e-28
gb|AAC40856.1| RNA-dependent RNA polymerase, partial [Grapevine ... 132 6e-28
gb|AFV34734.1| RNA-dependent RNA polymerase [Grapevine leafroll-... 132 6e-28
gb|AIH06942.1| RNA-dependent RNA polymerase, partial [Plum bark ... 132 8e-28
gb|AAZ06770.1| RNA-dependent RNA polymerase, partial [Grapevine ... 132 8e-28
>ref|YP_009109559.1| RNA-dependent RNA polymerase [Macrophomina phaseolina tobamo-like
virus] gi|669258010|gb|AII21816.1| RNA-dependent RNA
polymerase [Macrophomina phaseolina tobamo-like virus]
Length = 2128
Score = 151 bits (382), Expect = 1e-33
Identities = 121/448 (27%), Positives = 193/448 (43%), Gaps = 12/448 (2%)
Frame = -1
Query: 1313 PRRAYRSKLNALNVPKRQNTNQELLTSIVARNTSAPQISQPQ-----TEDKIREIWDAFI 1149
PR+ R KL P RQ T ++ L ++ RN ++ P +D + D F
Sbjct: 1686 PRKTLRPKLRTSQAPPRQTTTRQALLALNKRNLGGSMVASPLGYYHFAQDSFERMMDCF- 1744
Query: 1148 RKACRDGSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALE 969
A D K + D + L DW + ++ +
Sbjct: 1745 --AVSDWRQKLK---------KMDKIVPNRRILDDWYQFQNVSTKMALNKFQNTTVLSEV 1793
Query: 968 EMRVERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLK 789
+ + Y +LK + K + KP S Q I++H K ++A + + L+
Sbjct: 1794 KRMISDYEFILKPEPKTSTETKPYSLYPTVQTIMFHKKQVNAFFGPMVREADRRFRSLLR 1853
Query: 788 PNYHVNLLKDNEDIGKFVTDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMN 609
PN N K +D+ +F+ N+D ENDFS YD+SQ + A L+ + LG+N
Sbjct: 1854 PNVLYNKGKALQDMEEFLELNYDRSLGNIIAENDFSDYDRSQLEVAHALDRVMLTWLGLN 1913
Query: 608 QEFLEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYA--YRDVD 435
+ LE W+LGH + + G+ +++ YQRKSGD TTAFGN +LN+ S+ Y+ + +
Sbjct: 1914 PDDLETWMLGHYKHSNFNYSLGLCVYLRYQRKSGDVTTAFGNTVLNMTSMAYSLDLQPEE 1973
Query: 434 AMWAVFMGDDS-IVCTRKPSADDDAVQVMAEV---FNLTAKYYVTRSPYFASSFVVLEPG 267
A+F+GDDS PS + ++ FN AK + YF +++ P
Sbjct: 1974 VRAAMFLGDDSWFQLVDSPSLRRRIRECSDKISIHFNGEAKTAYFETGYFCGLYIIDTPS 2033
Query: 266 KMRATMVPDPIKRIEKLSMHVNAEDPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRY- 90
++ ++ DPIKR KL E E + SF D +R Y D+ L V +R+
Sbjct: 2034 GVK--LLADPIKRAVKLGRWDVKEKSVLYENWLSFKDLMRNYDDECAQELLARAVYERHP 2091
Query: 89 EVSEGFVRGAASALGTLVRDKSAFRALW 6
+ + +L TL F LW
Sbjct: 2092 RATYDLAKPLIESLNTLRLSFKQFCQLW 2119
>emb|CDJ82925.1| RNA-dependent RNA polymerase domain containing protein [Haemonchus
contortus]
Length = 606
Score = 149 bits (376), Expect = 6e-33
Identities = 121/448 (27%), Positives = 198/448 (44%), Gaps = 8/448 (1%)
Frame = -1
Query: 1475 DPVHDLNQLYFDTFPGVAQASLEFD-----TFSLSLDAQD-RMLAAPYMKAPTYFGLPPA 1314
D V L Y + G +Q+ FD T L D R + + + GLP
Sbjct: 161 DVVTILQTFYDELLNGASQSLHRFDEIQVETSELRCFIDDVRFDKSRFGEVRKALGLPDP 220
Query: 1313 PRRAYRSKLNALNVPKRQNTNQELLTSIVARNTSAPQISQPQ-TEDKIREIWDAFIRKAC 1137
YR+ L R T ++ L ++ RN P+ + P + +++ + +F+ C
Sbjct: 221 D---YRALLRTAQPNTRPRTIRQTLLALSKRNCDVPKNALPSDVQSEVQRTYSSFLDTFC 277
Query: 1136 RDGSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRV 957
ARE+ L ++++ V + + L W D+ + + E +
Sbjct: 278 ------IPEAREVCLAYETETVDFSIENLNRWLNELEVEKIDRI--DVTNFIDLVTE--I 327
Query: 956 ERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYH 777
RY M+K + K L E Q IVYH ++A+Y S+ LKPN
Sbjct: 328 GRYTMMIKKEPKNKLEPHAFEEYLPVQNIVYHRPVINAIYGSMFKILFERFRRLLKPNVF 387
Query: 776 VNLLKDNEDIGKFVTDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFL 597
L K +++ + K E DFSK+DKSQ F+ E + F++LGM +
Sbjct: 388 CLLKKSLDELKIHLNTYLLPRQKYQKFEIDFSKFDKSQLGLCFEFENYFFERLGMEKYLN 447
Query: 596 EKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVF 417
W LGH + G+ + YQRKSGDA TAFGN ++++ S+ + + A F
Sbjct: 448 SLWRLGHQKSNAIDFIAGVKALLFYQRKSGDAATAFGNTLISMASIARSTDIRGFICAYF 507
Query: 416 MGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDP 237
+GDDS++ D V+ ++++FNL+AK YF S+F++ +PDP
Sbjct: 508 VGDDSLIFYADKRGDKQLVKNLSDIFNLSAKSIQKEVGYFCSTFIIETADGY--VPIPDP 565
Query: 236 IKRIEKLSMHVNAEDPQ-WDERYASFVD 156
+KR+E+L + D Q +R+ SF +
Sbjct: 566 LKRVERLGRDLCGVDKQGLKDRFISFAE 593
>ref|NP_620033.1| 195K protein [Pepper ringspot virus] gi|401790|gb|AAA47081.1| 195K
protein [Pepper ringspot virus]
Length = 1698
Score = 144 bits (364), Expect = 2e-31
Identities = 131/542 (24%), Positives = 226/542 (41%), Gaps = 12/542 (2%)
Frame = -1
Query: 1598 DVVGQLNPLDSAAPSRSNIEYAVT---LREAGETVQTFRF--APCSDP----VHDLNQLY 1446
D V +L S+ P S + Y VT L +F PCS P D+ Y
Sbjct: 1152 DEVSRLIAETSSLPKASLMRYFVTDAALWRCRSRFDSFSHHDGPCSVPDTGTTVDIQTWY 1211
Query: 1445 FDTFPGVAQASLEFDTFSLSLDAQDRMLAAPYMKAPTYFGLPPAPRRAYRSKLNALNVPK 1266
D FPG + D + +S + + +K+ + + L K
Sbjct: 1212 DDIFPGNSVRDSSLDGYMVSTTDCNVRVDNVVLKSGNWKDKYGDEMKCLVPVLRTAMPDK 1271
Query: 1265 RQNTNQELLTSIVARNTSAPQISQPQTEDKIREIWDAFIRKACRDGSDGTKGARELMLEF 1086
R+ T E L ++ RN +AP++ + E + + ++ D + +
Sbjct: 1272 RKTTQLEGLLALQKRNCAAPELQENVHESVLVDETIKRLKDVVYD-----------VEKI 1320
Query: 1085 QSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTLSV 906
+SDP+ + W I S + L E+ Y M+K+DVKP +
Sbjct: 1321 RSDPINQKIHMQKWWKNQSTSVQAK-----IISDVRELHEIDYSSYMFMIKSDVKPKMDT 1375
Query: 905 KPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLKDNEDIG---KFV 735
P+SE A Q +VYH+K +++L+ I + P++ N + D+ KF+
Sbjct: 1376 TPQSEYAALQTVVYHEKLINSLFGPIFKEINERRLDAMHPHFVFNTRMTSSDLNERVKFL 1435
Query: 734 TDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHS 555
+ D+D ++E D SK+DKS +QF L+ +++ G+++ W + HT +
Sbjct: 1436 HPDTDYD----FIEIDLSKFDKSANQFHLHLQLEIYRMFGLDEWAAYIWEVAHTQTTVRD 1491
Query: 554 MATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKPSA 375
+ G+ + YQ+KSGDA T N + ++ A+ + GDDS++ K +
Sbjct: 1492 IQNGMMAFIWYQQKSGDADTYNANSDRTLCALLSEMPLEKAVLMTYGGDDSLIAFPKGTT 1551
Query: 374 DDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNAE 195
D +A +N K + P F F+V + R VPDP+K + KL +
Sbjct: 1552 ICDPCDKLATKWNFECKIFKFNIPMFCGKFLV--KVQDRYEFVPDPVKVVTKLGKKSVID 1609
Query: 194 DPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSAFR 15
E + S DS RA +D + ++L + RY+ + + + AL L + +F
Sbjct: 1610 TQHLAEIFISLNDSNRALSDANVLYALDVAIADRYK----YEKSSVFALCALWKHIKSFS 1665
Query: 14 AL 9
AL
Sbjct: 1666 AL 1667
>ref|XP_007799255.1| putative replicase readthrough protein [Eutypa lata UCREL1]
gi|471559195|gb|EMR61648.1| putative replicase
readthrough protein [Eutypa lata UCREL1]
Length = 2449
Score = 141 bits (355), Expect = 2e-30
Identities = 126/485 (25%), Positives = 214/485 (44%), Gaps = 12/485 (2%)
Frame = -1
Query: 1424 AQASLEFDTFSLSLDAQDRMLAAPYMKAP-TYFGLPPAPRRAYRSKLNALNVPKRQNTNQ 1248
A AS + DT +L R Y K + F P PRR + KL P +Q T +
Sbjct: 1975 AHASPQTDTVNL------RTTVDGYFKQTLSKFFQPLKPRRTLKPKLRTACSPAKQPTAK 2028
Query: 1247 ELLTSIVARNTSAPQISQPQTEDKIREIWDAFIRKACRDGSD--GTKGARELMLEFQSDP 1074
S++ RN + P + F ++A + D G RE +F D
Sbjct: 2029 GAFFSLMKRNFGQQLFASPMG-------YREFAKEALENMMDTFGVPDWRERAKQF--DF 2079
Query: 1073 VALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMR--VERYHTMLKADVKPTLSVKP 900
V + + L +W + A ALEE+ V+ Y ++K K KP
Sbjct: 2080 VRPSREHLAEWMKAQTPQTLDALGK--MDHAFALEELADAVDDYEFIMKKTPKTPTDTKP 2137
Query: 899 ESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLKDNEDIGKFVTDNHD 720
+ + Q I++H+K +++ Y S+ ++P N K+ ++I F+ +
Sbjct: 2138 QKVLATVQTIMFHNKRVNSYYGSLVRELDRRFRSLIRPEVLYNKGKNMDEIEAFLNRYYQ 2197
Query: 719 FDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGI 540
+ENDFS +D+SQ + A L+ + LGM+ E L++W GH S + G+
Sbjct: 2198 ASFGALAIENDFSDFDRSQERVATALDLALLSMLGMHPEDLDEWARGHYKHSNISFSLGL 2257
Query: 539 SLHVLYQRKSGDATTAFGNVILNILSVTY--AYRDVDAMWAVFMGDDSIVCTRKPSADDD 366
+++ +QRKSGD TT+F N +LN+ ++ + + + + +F+GDDS + +
Sbjct: 2258 VVYLRWQRKSGDVTTSFCNTVLNMTAMAWCLGLKHEEVLVGMFLGDDSFLQLIPSPGLKE 2317
Query: 365 AVQVMAE----VFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNA 198
V+ +E +FN TAK + YF +++ +++ + DP +R KL
Sbjct: 2318 RVKQCSEKIGTLFNGTAKTSYFDTGYFCGLYILQVGDEIK--LAADPYRRAVKLGRWDMK 2375
Query: 197 EDPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEG-FVRGAASALGTLVRDKSA 21
+ E + SF DS+R Y D + +L V +R+ + G V +L TL +
Sbjct: 2376 DHDMVKENWISFQDSVRNYEDRRVQEALVGAVHERHPWAHGPNVDALVCSLYTLKKSFKE 2435
Query: 20 FRALW 6
FR W
Sbjct: 2436 FRNFW 2440
>gb|AGL80610.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
pitting-associated virus]
Length = 524
Score = 139 bits (350), Expect = 6e-30
Identities = 106/365 (29%), Positives = 170/365 (46%), Gaps = 3/365 (0%)
Frame = -1
Query: 1091 EFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTL 912
E D + AL +W V D+ +S + ++ R+ M+KAD+K L
Sbjct: 141 EIVGDTIGQNIVALENWLRTRTPLGKSALVRDLEASPDWMSDLN--RFKIMVKADMKSKL 198
Query: 911 SVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLK--DNEDIGKF 738
E+ + + Q IVYH + + L+SS+ LKP HV L +D +
Sbjct: 199 DGTAEASLPSGQNIVYHRRNICLLFSSVFQQLTERLKFLLKP--HVKLFHGCSLDDFAQS 256
Query: 737 VTDNHDFDAKCWYL-ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDL 561
+ D+ D +Y E D SKYDKSQ+ F +E+ ++++LGM+ E L+ W +
Sbjct: 257 LCDSAVGDLTSYYCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMDTELLDYWCASDFSSQV 316
Query: 560 HSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKP 381
S + G SL + QR++G ATT GN ++N+ + + F GDDSI+ P
Sbjct: 317 GSTSRGFSLSIGSQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAFSGDDSILFHHSP 376
Query: 380 SADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVN 201
D + + F++ K + PYF S F V+ G VPDP+K L N
Sbjct: 377 LDLDISNYELHFAFDV--KLFRMTVPYFCSKFFVV--GSSGLNFVPDPVKLFVSLGSEKN 432
Query: 200 AEDPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSA 21
+ ER+ SF+D ++Y D T+ ++ LV ++ S+ F+ + AL +L +
Sbjct: 433 DAESVMRERFVSFLDLTKSYEDLTVCDNMTTLVSVKWGYSD-FLSCSLFALHSLRANFGQ 491
Query: 20 FRALW 6
F LW
Sbjct: 492 FMRLW 496
>ref|YP_001552324.1| RNA-dependent RNA polymerase [Plum bark necrosis and stem
pitting-associated virus], partial [Plum bark necrosis
stem pitting-associated virus]
gi|158828623|gb|ABW81235.1| RNA-dependent RNA polymerase,
partial [Plum bark necrosis stem pitting-associated
virus]
Length = 524
Score = 139 bits (350), Expect = 6e-30
Identities = 104/353 (29%), Positives = 166/353 (47%), Gaps = 3/353 (0%)
Frame = -1
Query: 1055 ALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQ 876
AL +W D+ +S ++ R+ M+KAD+K L E+ + + Q
Sbjct: 153 ALENWLRTRTPLGKSALARDLEASPDWRSDLN--RFKIMVKADMKSKLDGTAETSLPSGQ 210
Query: 875 VIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLK--DNEDIGKFVTDNHDFDAKCW 702
IVYH + + L+SS+ LKP HV L +D + + D+ D +
Sbjct: 211 NIVYHRRNVCLLFSSVFQQLTERLKFLLKP--HVKLFHGCSLDDFAQSLRDSAVGDLTSY 268
Query: 701 YL-ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVL 525
Y E D SKYDKSQ+ F +E+ ++++LGM+ E LE W + S + G SL +
Sbjct: 269 YCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMDTELLEYWCASDFSSQVGSTSRGFSLSIG 328
Query: 524 YQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKPSADDDAVQVMAE 345
QR++G ATT GN ++N+ + + F GDDSI+ P D + +
Sbjct: 329 SQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAFSGDDSILFHHSPLDLDISNYELHF 388
Query: 344 VFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERYAS 165
F++ K + PYF S F V+ G VPDP+K L N ++ ER+ S
Sbjct: 389 AFDV--KLFRMTVPYFCSKFFVV--GSSGLNFVPDPVKLFVSLGSEKNDDESVMRERFVS 444
Query: 164 FVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSAFRALW 6
F+D ++Y D T+ ++ LV ++ S+ F+ + AL +L + F LW
Sbjct: 445 FLDLTKSYEDLTVCDNMTTLVSVKWGYSD-FLSCSLFALHSLRANFGQFMRLW 496
>emb|CDM63857.1| polyprotein [Plum bark necrosis stem pitting-associated virus]
Length = 2866
Score = 139 bits (349), Expect = 8e-30
Identities = 104/353 (29%), Positives = 162/353 (45%), Gaps = 3/353 (0%)
Frame = -1
Query: 1055 ALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQ 876
AL +W D+ +S ++ R+ M+KAD+K L E+ + + Q
Sbjct: 2495 ALENWLRTRTPLGKSALARDLEASPDWRSDLN--RFKIMVKADMKSKLDATAETSLPSGQ 2552
Query: 875 VIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLKDN--EDIGKFVTDNHDFDAKCW 702
IVYH + + L+SS+ LKP HV L +D + + D+ D +
Sbjct: 2553 NIVYHRRNVCLLFSSVFQQLTERLKFLLKP--HVKLFHGCSWDDFAQSLRDSAVGDLTAY 2610
Query: 701 YL-ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVL 525
Y E D SKYDKSQ+ F +E+ ++++LGM E LE W + S + G SL +
Sbjct: 2611 YCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMGTELLEYWCASDFSSQVGSTSRGCSLSIG 2670
Query: 524 YQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKPSADDDAVQVMAE 345
QR++G ATT GN ++N+ + A + F GDDSI+ P D +
Sbjct: 2671 SQRRTGTATTWLGNTVVNMALMARALGCENFSSMAFSGDDSILFHHSPL--DLDISNYEF 2728
Query: 344 VFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERYAS 165
F K + PYF S F V+ G VPD +K L N ++ ER+ S
Sbjct: 2729 HFAFDVKLFRMTVPYFCSKFFVV--GSSGLNFVPDAVKLFVSLGSEKNDDESVMRERFVS 2786
Query: 164 FVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSAFRALW 6
F+D ++Y D T+ ++ LV ++ S+ F+ + AL +L + F LW
Sbjct: 2787 FLDLTKSYADLTVCDNMTTLVSVKWRYSD-FLSCSLFALHSLSANFGQFMRLW 2838
>gb|AIH06928.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
pitting-associated virus]
Length = 524
Score = 138 bits (347), Expect = 1e-29
Identities = 104/353 (29%), Positives = 166/353 (47%), Gaps = 3/353 (0%)
Frame = -1
Query: 1055 ALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQ 876
AL +W D+ +S ++ R+ M+KAD+K L E+ + + Q
Sbjct: 153 ALENWLRTRTPLGKSALARDLEASPDWRSDLN--RFKIMVKADMKSKLDGTAETSLPSGQ 210
Query: 875 VIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLK--DNEDIGKFVTDNHDFDAKCW 702
IVYH + + L+SS+ LKP HV L +D + + D+ D +
Sbjct: 211 NIVYHRRNVCLLFSSVFQQLTERLKFLLKP--HVKLFHGCSLDDFAQPLCDSAVGDLTSY 268
Query: 701 YL-ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVL 525
Y E D SKYDKSQ+ F +E+ ++++LGM+ E LE W + S + G SL +
Sbjct: 269 YCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMDTELLEYWCASDFSSQVGSTSRGFSLSIG 328
Query: 524 YQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKPSADDDAVQVMAE 345
QR++G ATT GN ++N+ + + F GDDSI+ P D + +
Sbjct: 329 SQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAFSGDDSILFHHSPLDLDISNYELHF 388
Query: 344 VFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERYAS 165
F++ K + PYF S F V+ G VPDP+K L N ++ ER+ S
Sbjct: 389 AFDV--KLFRMTVPYFCSKFFVV--GSSGLNFVPDPVKLFVSLGSEKNDDESVMRERFIS 444
Query: 164 FVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSAFRALW 6
F+D ++Y D T+ ++ LV ++ S+ F+ + AL +L + F LW
Sbjct: 445 FLDLTKSYEDLTVCDNMTTLVSVKWGYSD-FLSCSLFALHSLRANFGQFMRLW 496
>gb|AGL80617.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
pitting-associated virus] gi|500154691|gb|AGL80624.1|
RNA-dependent RNA polymerase, partial [Plum bark necrosis
stem pitting-associated virus]
Length = 525
Score = 137 bits (344), Expect = 3e-29
Identities = 102/351 (29%), Positives = 164/351 (46%), Gaps = 1/351 (0%)
Frame = -1
Query: 1055 ALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQ 876
AL +W DI +S ++ ++ M+KAD+K L E+ + + Q
Sbjct: 153 ALENWLRTRTPLGKSALARDIEASPDWRSDLN--KFKIMVKADMKSKLDGTAETSLPSGQ 210
Query: 875 VIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLKDNEDIGKFVTDNHDFDAKCWYL 696
IVYH + + L+SS+ LKPN + +D + + D+ + +Y
Sbjct: 211 NIVYHRRNVCLLFSSVFQQLTERLKFLLKPNVKLFHGCSLDDFAQSLCDSAVGELTSYYC 270
Query: 695 -ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVLYQ 519
E D SKYDKSQ+ F +E+ ++++LG++ E L+ W + S + G SL + Q
Sbjct: 271 AEVDLSKYDKSQNDFTKGIEHEIYRRLGLDTELLDLWSASDFSSQVGSTSRGFSLSIGSQ 330
Query: 518 RKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKPSADDDAVQVMAEVF 339
R++G ATT GN ++N+ + F GDDSI+ P D + + F
Sbjct: 331 RRTGTATTWLGNTVVNMALMARVLGCEKFSSMAFSGDDSILFHHSPLDLDISNYELHFAF 390
Query: 338 NLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERYASFV 159
++ K + PYF S F V+ G VPDP+K L N E+ ER+ SF+
Sbjct: 391 DV--KLFRMTVPYFCSKFFVV--GSSGLQFVPDPVKLFVSLGSEKNDEESVMRERFISFL 446
Query: 158 DSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSAFRALW 6
D +AY D T+ +L LV ++ S+ F+ + AL +L + F LW
Sbjct: 447 DLTKAYEDLTVCDNLTTLVSIKWGYSD-FLSCSLFALHSLRANFGQFMRLW 496
>ref|YP_004901701.1| polymerase [Blueberry necrotic ring blotch virus]
gi|351630291|gb|AEQ55300.1| polymerase [Blueberry
necrotic ring blotch virus]
Length = 1144
Score = 135 bits (341), Expect = 7e-29
Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 2/292 (0%)
Frame = -1
Query: 959 VERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNY 780
++RY +LK++ KP L+V+ S+ Q I+ H K ++A++ + + Y
Sbjct: 812 LDRYQFLLKSEPKPDLTVEALSKYPIPQSILCHSKDINAIFCPLIRTIRDRIMEKMDKKY 871
Query: 779 HVNLLKDNEDIGKFVTDNHDFDAKCWYL--ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQ 606
D E + + D+ +Y E D SKYDKSQ Q D E + ++LG+ +
Sbjct: 872 QFFTKVDEEGFAEKMNRVFPADSAKFYYSYEFDMSKYDKSQGQLVLDFECALMRRLGVPE 931
Query: 605 EFLEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMW 426
+ W + HT + IS ++QRKSGDA+T FGN ++ ++++ D D ++
Sbjct: 932 YIVGCWRVAHTRTRARDLTNKISFETVFQRKSGDASTYFGNTVILMIALLDVLPDEDVVF 991
Query: 425 AVFMGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMV 246
F GDDS++ + +P D ++++ +N K + + YF S FV+ G R +
Sbjct: 992 GAFSGDDSLIFSTRP-PDKIDFKILSTRYNFEVKLFDFQYHYFCSKFVLNVNG--RWVVT 1048
Query: 245 PDPIKRIEKLSMHVNAEDPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRY 90
PDP+KR KL +E SF+D+++ Y + + L V +RY
Sbjct: 1049 PDPLKRAVKLGRADLRNFDHVEEYRVSFIDNVKTYNNSAVVEKLSLAVMERY 1100
>ref|NP_620047.1| replicase [Peanut clump virus] gi|334350865|sp|Q84687.2|RDRP_PCV87
RecName: Full=Replicase large subunit; AltName:
Full=RNA-directed RNA polymerase; Contains: RecName:
Full=Replicase small subunit; AltName:
Full=Methyltransferase/RNA helicase
Length = 1672
Score = 134 bits (337), Expect = 2e-28
Identities = 118/483 (24%), Positives = 206/483 (42%), Gaps = 16/483 (3%)
Frame = -1
Query: 1487 APCSDPVHDLNQLYFDTFPGVAQASLEFDTFSLSLDAQDRMLAAPYMK-APTYFGLPPAP 1311
AP + + LY TFPG + FD ++++ + D L K AP
Sbjct: 1164 APDVGDLVTIQDLYDRTFPGNSTLDSSFDGYTVA--SSDLELEISNCKIAPNKSIRGFQE 1221
Query: 1310 RRAYRSKLNALNVPKRQNTNQELLTSIVARNTSAPQISQPQTEDKIREIWDAFIRKACRD 1131
+ + KL KRQ + E + ++ RN + P++ + E +I E D +
Sbjct: 1222 KICFSPKLRTAMPEKRQGSFAESILALRKRNMACPRLQESVNEHQIIE--DTIAKAFSCY 1279
Query: 1130 GSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVER 951
+D P+ + ALR W + + + L+++ V
Sbjct: 1280 FTDSF---------VDQSPLITDESALRWWEKQSTTAK-----NQMLADWRTLDQIDVCT 1325
Query: 950 YHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVN 771
Y+ M+K DVKP L + P+SE A Q +VY +K ++ L+ + LKPN VN
Sbjct: 1326 YNFMIKNDVKPKLDLTPQSEYAALQTVVYPEKIVNGLFGPVIKEINERVLSALKPNVFVN 1385
Query: 770 LLKDNEDIGK---FVTDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEF 600
+E++ + ++ +F+ +E DFSKYDKS++ + +++Q G+N
Sbjct: 1386 TRMTSEELSRTAEYLYPGDEFEV----VEIDFSKYDKSKTSLHIRMVIKLYEQFGLNGYM 1441
Query: 599 LEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAV 420
W T + G+ ++LYQ+KSG+ T N ++ ++ A++++
Sbjct: 1442 KYLWEKSQTQTVVKDRNYGVEAYILYQQKSGNCDTYGSNTYSSMFALLDCLPMEKAVYSI 1501
Query: 419 FMGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPD 240
F GDDS++ K + +D +A ++N K R P F F++ G+ R PD
Sbjct: 1502 FGGDDSLILFPKGTIINDPCGRLASLWNFDCKSMKFRVPAFCGKFLIPVGGRYR--FEPD 1559
Query: 239 PIKRIEKLSMHVNAEDPQ------------WDERYASFVDSLRAYTDDTLAHSLCALVPQ 96
P+K I KL A + + E Y S D+ + Y D + +L +
Sbjct: 1560 PMKLITKLGNKTIAIEGKTKAEVRKNGSKLLSEIYVSICDNYKNYDDARVLDALAYALVD 1619
Query: 95 RYE 87
RY+
Sbjct: 1620 RYK 1622
>gb|AFI24693.1| hypothetical protein 1, partial [Loreto virus]
Length = 2328
Score = 134 bits (336), Expect = 3e-28
Identities = 126/492 (25%), Positives = 210/492 (42%), Gaps = 12/492 (2%)
Frame = -1
Query: 1511 ETVQTFRFAPCSDPVHDLNQLYFDTFPGVAQASL---EFDTFSLSLDAQDRMLAAPYMKA 1341
ET F + CS ++ F + L E+D F+ ++ + + + A
Sbjct: 1825 ETPIIFSESTCSFDINHAQIFLNSVFSDICFIDLSFDEYDVFNSDINLELGDITYSRISA 1884
Query: 1340 PTYFGLPPAPRRAYRSKLNALNVP---KRQNTNQELLTSIVARNTSAPQISQPQTEDKIR 1170
Y Y + + L+ P R+ +E+L ++ RN + P + D++
Sbjct: 1885 QNY-------ESPYENMIPNLHSPCPFDRKYNYREILLALEKRNRNVPYFNGVVDYDRVS 1937
Query: 1169 -EIWDAFIRKACRDGSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDI 993
E+ DA +R+ C D L L SDPV + + W V D
Sbjct: 1938 SEMLDALLRE-CFD-------PYRLRLAC-SDPVRIGSGDIHSW-----LKKQPLEVHDQ 1983
Query: 992 RSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXX 813
+ A+ + +Y +K KP L+V S A Q IVYH+K ++A++ ++
Sbjct: 1984 IVPSFAMHNDALNQYSFSIKKQAKPNLTVDAASSYAALQTIVYHEKHINAVFCTMFTELK 2043
Query: 812 XXXXXXLKPNYHVNLLKDNEDIGKFVTDN---HDFDAKCWYLENDFSKYDKSQSQFAFDL 642
L+ N + D K + + D +LE D SKYDKSQ + A +L
Sbjct: 2044 KRVRYSLRKNVKIFSDISTSDFEKMLDSDIPPESLDPLLDHLEIDISKYDKSQRELALEL 2103
Query: 641 EYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILS 462
E + +Q G+ +E ++ W H ++ + + + YQRKSGDA+T GN + +++
Sbjct: 2104 ECKILRQFGIEEELVQLWFNAHILTYIYDKNSKLKAAIPYQRKSGDASTFIGNTLF-LMA 2162
Query: 461 VTYAYRDVDAMW-AVFMGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSF 285
V V M+ A+F GDDS++ D Q +FNL K++ YF S F
Sbjct: 2163 VISLLIPVSQMYLALFSGDDSLIYGYHLKKYMD-TQHFGLMFNLEIKFFQFLLSYFCSRF 2221
Query: 284 VVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERY-ASFVDSLRAYTDDTLAHSLCA 108
+++ G T PDP+K KL H N +P E Y S +D+ R + + + +
Sbjct: 2222 LLIVDGHW--TFTPDPVKLFVKLGRH-NLINPAHVEEYRISLIDNCRGFENSLICDHVAM 2278
Query: 107 LVPQRYEVSEGF 72
V +RY + F
Sbjct: 2279 AVCERYGIINNF 2290
>gb|AFI24690.1| hypothetical protein 1 [Loreto virus]
Length = 2337
Score = 134 bits (336), Expect = 3e-28
Identities = 126/492 (25%), Positives = 210/492 (42%), Gaps = 12/492 (2%)
Frame = -1
Query: 1511 ETVQTFRFAPCSDPVHDLNQLYFDTFPGVAQASL---EFDTFSLSLDAQDRMLAAPYMKA 1341
ET F + CS ++ F + L E+D F+ ++ + + + A
Sbjct: 1834 ETPIIFSESTCSFDINHAQIFLNSVFSDICFIDLSFDEYDVFNSDINLELGDITYSRISA 1893
Query: 1340 PTYFGLPPAPRRAYRSKLNALNVP---KRQNTNQELLTSIVARNTSAPQISQPQTEDKIR 1170
Y Y + + L+ P R+ +E+L ++ RN + P + D++
Sbjct: 1894 QNY-------ESPYENMIPNLHSPCPFDRKYNYREILLALEKRNRNVPYFNGVVDYDRVS 1946
Query: 1169 -EIWDAFIRKACRDGSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDI 993
E+ DA +R+ C D L L SDPV + + W V D
Sbjct: 1947 SEMLDALLRE-CFD-------PYRLRLAC-SDPVRIGSGDIHSW-----LKKQPLEVHDQ 1992
Query: 992 RSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXX 813
+ A+ + +Y +K KP L+V S A Q IVYH+K ++A++ ++
Sbjct: 1993 IVPSFAMHNDALNQYSFSIKKQAKPNLTVDAASSYAALQTIVYHEKHINAVFCTMFTELK 2052
Query: 812 XXXXXXLKPNYHVNLLKDNEDIGKFVTDN---HDFDAKCWYLENDFSKYDKSQSQFAFDL 642
L+ N + D K + + D +LE D SKYDKSQ + A +L
Sbjct: 2053 KRVRYSLRKNVKIFSDISTSDFEKMLDSDIPPESLDPLLDHLEIDISKYDKSQRELALEL 2112
Query: 641 EYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILS 462
E + +Q G+ +E ++ W H ++ + + + YQRKSGDA+T GN + +++
Sbjct: 2113 ECKILRQFGIEEELVQLWFNAHILTYIYDKNSKLKAAIPYQRKSGDASTFIGNTLF-LMA 2171
Query: 461 VTYAYRDVDAMW-AVFMGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSF 285
V V M+ A+F GDDS++ D Q +FNL K++ YF S F
Sbjct: 2172 VISLLIPVSQMYLALFSGDDSLIYGYHLKKYMD-TQHFGLMFNLEIKFFQFLLSYFCSRF 2230
Query: 284 VVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERY-ASFVDSLRAYTDDTLAHSLCA 108
+++ G T PDP+K KL H N +P E Y S +D+ R + + + +
Sbjct: 2231 LLIVDGHW--TFTPDPVKLFVKLGRH-NLINPAHVEEYRISLIDNCRGFENSLICDHVAM 2287
Query: 107 LVPQRYEVSEGF 72
V +RY + F
Sbjct: 2288 AVCERYGIINNF 2299
>gb|AFI24687.1| hypothetical protein 1, partial [Loreto virus]
Length = 2329
Score = 134 bits (336), Expect = 3e-28
Identities = 126/492 (25%), Positives = 210/492 (42%), Gaps = 12/492 (2%)
Frame = -1
Query: 1511 ETVQTFRFAPCSDPVHDLNQLYFDTFPGVAQASL---EFDTFSLSLDAQDRMLAAPYMKA 1341
ET F + CS ++ F + L E+D F+ ++ + + + A
Sbjct: 1826 ETPIIFSESTCSFDINHAQIFLNSVFSDICFIDLSFDEYDVFNSDINLELGDITYSRISA 1885
Query: 1340 PTYFGLPPAPRRAYRSKLNALNVP---KRQNTNQELLTSIVARNTSAPQISQPQTEDKIR 1170
Y Y + + L+ P R+ +E+L ++ RN + P + D++
Sbjct: 1886 QNY-------ESPYENMIPNLHSPCPFDRKYNYREILLALEKRNRNVPYFNGVVDYDRVS 1938
Query: 1169 -EIWDAFIRKACRDGSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDI 993
E+ DA +R+ C D L L SDPV + + W V D
Sbjct: 1939 SEMLDALLRE-CFD-------PYRLRLAC-SDPVRIGSGDIHSW-----LKKQPLEVHDQ 1984
Query: 992 RSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXX 813
+ A+ + +Y +K KP L+V S A Q IVYH+K ++A++ ++
Sbjct: 1985 IVPSFAMHNDALNQYSFSIKKQAKPNLTVDAASSYAALQTIVYHEKHINAVFCTMFTELK 2044
Query: 812 XXXXXXLKPNYHVNLLKDNEDIGKFVTDN---HDFDAKCWYLENDFSKYDKSQSQFAFDL 642
L+ N + D K + + D +LE D SKYDKSQ + A +L
Sbjct: 2045 KRVRYSLRKNVKIFSDISTSDFEKMLDSDIPPESLDPLLDHLEIDISKYDKSQRELALEL 2104
Query: 641 EYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILS 462
E + +Q G+ +E ++ W H ++ + + + YQRKSGDA+T GN + +++
Sbjct: 2105 ECKILRQFGIEEELVQLWFNAHILTYIYDKNSKLKAAIPYQRKSGDASTFIGNTLF-LMA 2163
Query: 461 VTYAYRDVDAMW-AVFMGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSF 285
V V M+ A+F GDDS++ D Q +FNL K++ YF S F
Sbjct: 2164 VISLLIPVSQMYLALFSGDDSLIYGYHLKKYMD-TQHFGLMFNLEIKFFQFLLSYFCSRF 2222
Query: 284 VVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERY-ASFVDSLRAYTDDTLAHSLCA 108
+++ G T PDP+K KL H N +P E Y S +D+ R + + + +
Sbjct: 2223 LLIVDGHW--TFTPDPVKLFVKLGRH-NLINPAHVEEYRISLIDNCRGFENSLICDHVAM 2279
Query: 107 LVPQRYEVSEGF 72
V +RY + F
Sbjct: 2280 AVCERYGIINNF 2291
>gb|AGE45915.1| RNA-dependent RNA polymerase, partial [Grapevine leafroll-associated
virus 3]
Length = 543
Score = 133 bits (335), Expect = 3e-28
Identities = 94/315 (29%), Positives = 155/315 (49%)
Frame = -1
Query: 950 YHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVN 771
Y M+K+DVKP L P S+ Q IVYHD+ ++AL+S + + +
Sbjct: 187 YTLMVKSDVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCVFTACVERLKYVVSDRWLFY 246
Query: 770 LLKDNEDIGKFVTDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEK 591
D +D+ + + ++ + + E D SKYDKSQS +E + LG+++E L
Sbjct: 247 HGMDTKDLARKLKNDLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREILST 306
Query: 590 WLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMG 411
+ G D + +M + L V QR+SG A T GN ++ ++ R +D + V G
Sbjct: 307 FFCGEYDSVVRTMTRELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYDYVVVSG 366
Query: 410 DDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIK 231
DDS++ +++P D D V V+++ F K + +PYF S F+V + VPDP+K
Sbjct: 367 DDSLIFSKRP-LDIDTV-VLSDNFGFDVKVFNQAAPYFCSKFLVQVEDDL--YFVPDPLK 422
Query: 230 RIEKLSMHVNAEDPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASA 51
K + ++ E + SFVD R + + + +L LV ++Y+ S G+ A
Sbjct: 423 LFVKFGVSKTSDIDLLHEIFQSFVDLSRGFNREDVIQALVHLVTRKYKHS-GWTYAALCV 481
Query: 50 LGTLVRDKSAFRALW 6
L L + S FR L+
Sbjct: 482 LHVLSANFSQFRRLY 496
>emb|CCV01575.2| polymerase [Negev-like virus #174]
Length = 2368
Score = 132 bits (333), Expect = 6e-28
Identities = 110/409 (26%), Positives = 181/409 (44%), Gaps = 5/409 (1%)
Frame = -1
Query: 1265 RQNTNQELLTSIVARNTSAPQISQP-QTEDKIREIWDAFIRKACRDGSDGTKGARELMLE 1089
R +EL+ ++ RN + P ++ E E+ D+ + + C D + +L
Sbjct: 1946 RDYNTRELMLALEKRNRNVPSMNGVVDIEVSSSEMLDSLLEE-CFDPA---------LLR 1995
Query: 1088 FQ-SDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTL 912
F +DP+ ++ +++ +W V D AL E Y+ +K KP L
Sbjct: 1996 FHLADPITISSNSVGEWLSGQPLSVRTMIVPDFALHCLALNE-----YNFSIKRKPKPNL 2050
Query: 911 SVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLKDNEDIGKFVT 732
+V + A Q IVYH+K ++A++ S+ L P+ + +ED + +
Sbjct: 2051 TVDATASYLALQTIVYHEKSINAMFCSVFREIKKRVTSSLLPHVKIFCDMSSEDFEEVLQ 2110
Query: 731 DN---HDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDL 561
+ A C LE D SKYDKSQ + A + E + + G+ + +E W H +
Sbjct: 2111 RDIPPSKLSALCDKLEIDISKYDKSQRELALEFECKLMLRFGVAPDIVELWFNAHVLTRV 2170
Query: 560 HSMATGISLHVLYQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKP 381
+ T + V YQRKSGDA+T GN + + V A+F GDDS++
Sbjct: 2171 YDKTTKLKALVSYQRKSGDASTFIGNTLFLMAVVCDLIPVSQLELALFSGDDSLLYGHSL 2230
Query: 380 SADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVN 201
S +A Q FNL K++ YF S F+++ T PDP+K I KL H
Sbjct: 2231 SQFKNA-QHFGLKFNLEIKFFEFDKSYFCSKFLLVVNDHW--TFTPDPLKFITKLGRHDL 2287
Query: 200 AEDPQWDERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAAS 54
+E SFVD+++ Y + + ++ + +RY V + F AS
Sbjct: 2288 VNSLHVEEYRISFVDTVKNYKNYAVCIAVADALRERYGVFKDFTNFLAS 2336
>gb|AAC40856.1| RNA-dependent RNA polymerase, partial [Grapevine leafroll-associated
virus 2]
Length = 459
Score = 132 bits (333), Expect = 6e-28
Identities = 123/439 (28%), Positives = 190/439 (43%), Gaps = 16/439 (3%)
Frame = -1
Query: 1274 VPKRQNTNQELLTSIVARN---------TSAPQISQPQTEDKIREIWDAFIRKACRDGSD 1122
+P+R+ + QE L S ARN TSA + + +R +D + RD
Sbjct: 8 IPRRKPSLQENLYSFEARNYNFSTCDRNTSASMFGEAMAMNCLRRCFDLDAFSSLRD--- 64
Query: 1121 GTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHT 942
D +++ + W ++D+ S + +E + R+
Sbjct: 65 --------------DVISITRSGIEQWLEKRTPSQIKALMKDVESPLEIDDE--ICRFKL 108
Query: 941 MLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLK 762
M+K D K L ++ +A+Q I++H K ++A++S I LKPN
Sbjct: 109 MVKRDAKVKLDSSCLTKHSAAQNIMFHRKSINAIFSPIFNEVKNRIMCCLKPNIKFFTEM 168
Query: 761 DNEDIGKFVTDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLL 582
N D V++ D E DFSKYDKSQ F E ++++LG+++E L W+
Sbjct: 169 TNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEEVMYKELGVDEELLAIWMC 228
Query: 581 GHTDCDLHSMATGISLHVLYQRKSGDATTAFGN--VILNILSVTYAYRDVDAMWAVFMGD 408
G +++ +S + QRKSG + T GN V L ILS+ Y R+ +A++ GD
Sbjct: 229 GERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILSLYYDVRNFEALY--ISGD 286
Query: 407 DSIVCTRKPSAD--DDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPI 234
DS++ +R ++ DD M K+ PYF S FVV+ K VPDP
Sbjct: 287 DSLIFSRSEISNYADDICTDM----GFETKFMSPSVPYFCSKFVVMCGHK--TFFVPDPY 340
Query: 233 KRIEKLSMHVNAEDPQWD---ERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRG 63
K KL ED D E + SF D + D+ L L LV +YEV G
Sbjct: 341 KLFVKLG--AVKEDVSMDFLFETFTSFKDLTSDFNDERLIQKLAELVALKYEVQTGNTTL 398
Query: 62 AASALGTLVRDKSAFRALW 6
A S + L + +F L+
Sbjct: 399 ALSVIHCLRSNFLSFSKLY 417
>gb|AFV34734.1| RNA-dependent RNA polymerase [Grapevine leafroll-associated virus 2]
Length = 500
Score = 132 bits (333), Expect = 6e-28
Identities = 123/444 (27%), Positives = 193/444 (43%), Gaps = 14/444 (3%)
Frame = -1
Query: 1295 SKLNALNVPKRQNTNQELLTSIVARN---------TSAPQISQPQTEDKIREIWDAFIRK 1143
S + + +P+R+ + QE L S ARN TSA + + IR +D
Sbjct: 42 SAVRSQAIPRRKPSLQENLYSFEARNYNFSTCDRFTSASMFGEAMAMNCIRRCFDLETFS 101
Query: 1142 ACRDGSDGTKGARELMLEFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEM 963
+ RD D +++ + W ++DI S + +E
Sbjct: 102 SLRD-----------------DVISITRSGIEQWLEKRTPSQIKALMKDIESPLEIDDE- 143
Query: 962 RVERYHTMLKADVKPTLSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPN 783
+ R+ M+K D K L ++ +A+Q I++H K ++A++S I LKPN
Sbjct: 144 -ICRFKLMVKRDAKVKLDSSCLTKHSAAQNIMFHRKSINAIFSPIFNEVKNRIMSCLKPN 202
Query: 782 YHVNLLKDNEDIGKFVTDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQE 603
N D V++ D E DFSKYDKSQ F E ++++LG+++E
Sbjct: 203 IKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKSFEEVMYKELGVDEE 262
Query: 602 FLEKWLLGHTDCDLHSMATGISLHVLYQRKSGDATTAFGN--VILNILSVTYAYRDVDAM 429
L W+ G +++ +S + QRKSG + T GN V L ILS+ Y R +A+
Sbjct: 263 LLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILSLYYDVRHFEAL 322
Query: 428 WAVFMGDDSIVCTRKPSADDDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATM 249
+ GDDS++ +R + A + A++ K+ PYF S FVV+ K
Sbjct: 323 YV--SGDDSLIFSRN-KISNYADDICADM-GFETKFMSPSVPYFCSKFVVMCGHK--TFF 376
Query: 248 VPDPIKRIEKLSMHVNAEDPQWD---ERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSE 78
VPDP K KL ED D E + SF D + D+ + L LV +Y+V
Sbjct: 377 VPDPYKLFVKLG--AVKEDVSMDFLFETFTSFKDLTSDFNDERVIQKLAELVALKYDVQS 434
Query: 77 GFVRGAASALGTLVRDKSAFRALW 6
G A S + L + +F L+
Sbjct: 435 GNTTLALSVIHCLRSNFLSFSKLY 458
>gb|AIH06942.1| RNA-dependent RNA polymerase, partial [Plum bark necrosis stem
pitting-associated virus]
Length = 524
Score = 132 bits (332), Expect = 8e-28
Identities = 101/353 (28%), Positives = 164/353 (46%), Gaps = 3/353 (0%)
Frame = -1
Query: 1055 ALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPTLSVKPESEVTASQ 876
AL +W V D+ +S + ++ R+ M+KAD+K L E+ + + Q
Sbjct: 153 ALENWLRTRTPLGKSALVRDLEASPDWMSDLN--RFKIMVKADMKSKLDGTAETSLPSGQ 210
Query: 875 VIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLK--DNEDIGKFVTDNHDFDAKCW 702
IVYH + + L+SS+ LKP HV L +D + + D+ D +
Sbjct: 211 NIVYHRRNICLLFSSVFQQLTERLKFLLKP--HVKLFHGCSLDDFAQSLCDSAIGDLTSY 268
Query: 701 YL-ENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHSMATGISLHVL 525
Y E D SKYDKSQ+ F +E+ ++++LGM+ E L+ W + S + G SL +
Sbjct: 269 YCAEVDLSKYDKSQNDFTKGIEHEIYRRLGMDTELLDYWCASDFSSQVGSTSRGFSLSIG 328
Query: 524 YQRKSGDATTAFGNVILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKPSADDDAVQVMAE 345
QR++G ATT GN ++N+ + D F GD SI+ P D + +
Sbjct: 329 SQRRTGTATTWLGNTVVNMTLMARVLGCEDFSSMAFSGDASILFHHSPLDLDISNYELHF 388
Query: 344 VFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMHVNAEDPQWDERYAS 165
F++ K + PYF S F V+ G PDP+K L N ++ ER+ S
Sbjct: 389 AFDV--KLFRITVPYFWSKFFVV--GSSGLNFAPDPVKLFVSLGSEKNDDESVMRERFVS 444
Query: 164 FVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLVRDKSAFRALW 6
F+D ++Y D + ++ V ++ S+ F+ + AL +L + F LW
Sbjct: 445 FLDLTKSYEDLKVCDNMTTHVSVKWGYSD-FLACSLFALHSLTANFGQFMRLW 496
>gb|AAZ06770.1| RNA-dependent RNA polymerase, partial [Grapevine leafroll-associated
virus 2]
Length = 459
Score = 132 bits (332), Expect = 8e-28
Identities = 119/430 (27%), Positives = 188/430 (43%), Gaps = 7/430 (1%)
Frame = -1
Query: 1274 VPKRQNTNQELLTSIVARNTSAPQISQPQTEDKIREIWDAFIRKACRDGSDGTKGARELM 1095
+P+R+ + QE L S ARN + + + E + C D +
Sbjct: 8 IPRRKPSLQENLYSFEARNYNFSTCDRYTSASMFGEAMAMNCLRRCFD--------LDAF 59
Query: 1094 LEFQSDPVALADDALRDWSXXXXXXXXXXXVEDIRSSAKALEEMRVERYHTMLKADVKPT 915
++D +++ + W ++D+ S + +E + R+ M+K D K
Sbjct: 60 SSLRNDVISITRSGIEQWLEKRTPSQIKALMKDVESPLEIDDE--ICRFKLMVKRDAKVK 117
Query: 914 LSVKPESEVTASQVIVYHDKPLSALYSSIXXXXXXXXXXXLKPNYHVNLLKDNEDIGKFV 735
L ++ +A+Q I++H K ++A++S I LKPN N D V
Sbjct: 118 LDSSCLTKHSAAQNIMFHRKSINAIFSPIFNEVKNRIMCCLKPNIKFFTEMTNRDFASVV 177
Query: 734 TDNHDFDAKCWYLENDFSKYDKSQSQFAFDLEYFVFQQLGMNQEFLEKWLLGHTDCDLHS 555
++ D E DFSKYDKSQ F E ++++LG+++E L W+ G ++
Sbjct: 178 SNMLGDDDVYHIGEVDFSKYDKSQDAFVKAFEEVMYKELGVDEELLAIWMCGERLSIANT 237
Query: 554 MATGISLHVLYQRKSGDATTAFGN--VILNILSVTYAYRDVDAMWAVFMGDDSIVCTRKP 381
+ +S + QRKSG + T GN V L ILS+ Y R+ +A++ GDDS++ +R
Sbjct: 238 LDGQLSFTIENQRKSGASNTWIGNSLVTLGILSLYYDVRNFEALYV--SGDDSLIFSRSE 295
Query: 380 SAD--DDAVQVMAEVFNLTAKYYVTRSPYFASSFVVLEPGKMRATMVPDPIKRIEKLSMH 207
++ DD M K+ PYF S FVV+ K VPDP K KL
Sbjct: 296 ISNYADDICTDM----GFETKFMSPSVPYFCSKFVVMCGHK--TFFVPDPYKLFVKLG-- 347
Query: 206 VNAEDPQWD---ERYASFVDSLRAYTDDTLAHSLCALVPQRYEVSEGFVRGAASALGTLV 36
ED D E + SF D + D+ L L LV +YEV G A S + L
Sbjct: 348 AVKEDASMDFLFETFTSFKDLTSDFNDERLIQKLAELVALKYEVQTGNTTLALSVIHCLR 407
Query: 35 RDKSAFRALW 6
+ +F L+
Sbjct: 408 SNFLSFSKLY 417