BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00051855
         (2786 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009109559.1| RNA-dependent RNA polymerase [Macrophomina p...   112   1e-21
gb|ACV13190.1| RNA replicase [Ribgrass mosaic virus] gi|25669286...   112   2e-21
gb|AFT83336.1| replicase read-through product [Youcai mosaic virus]   111   3e-21
gb|AGW21597.1| replicase [Youcai mosaic virus]                        110   5e-21
ref|NP_543049.1| unnamed protein product [Wasabi mottle virus] g...   110   5e-21
gb|AEV92949.1| replicase large component [Youcai mosaic virus]        110   5e-21
gb|ABB55800.1| replicase read-through product [Youcai mosaic virus]   110   5e-21
gb|AAP79445.1| RNA replicase, read-through component [Youcai mos...   110   5e-21
gb|AAK53541.1| RNA replicase read-through component [Youcai mosa...   110   5e-21
gb|AEI69664.1| replicase readthrough component [Ribgrass mosaic ...   110   6e-21
ref|YP_005476600.1| replicase readthrough component [Ribgrass mo...   110   6e-21
gb|ACB73170.1| replicase read-through product [Youcai mosaic virus]   110   6e-21
ref|NP_740757.2| replicase [Youcai mosaic virus] gi|10720256|sp|...   110   8e-21
ref|YP_002455905.1| replicase [Cactus mild mottle virus]              110   8e-21
gb|ABX57121.1| 58 kDa protein, partial [Cactus mild mottle virus]     110   8e-21
prf||2211419A replicase [Chinese Rape Mosaic Virus]                   110   8e-21
gb|AEI69657.1| replicase readthrough component [Ribgrass mosaic ...   110   8e-21
dbj|BAN15047.1| replicase read-through product [Youcai mosaic vi...   109   1e-20
dbj|BAD90598.1| 183 KDa protein [Pepper mild mottle virus]            109   1e-20
gb|AHW98777.1| RNA replicase readthrough protein [Wasabi mottle ...   109   1e-20

>ref|YP_009109559.1| RNA-dependent RNA polymerase [Macrophomina phaseolina tobamo-like
            virus] gi|669258010|gb|AII21816.1| RNA-dependent RNA
            polymerase [Macrophomina phaseolina tobamo-like virus]
          Length = 2128

 Score =  112 bits (281), Expect = 1e-21
 Identities = 118/470 (25%), Positives = 199/470 (42%), Gaps = 22/470 (4%)
 Frame = -3

Query: 1359 SLIDTAMFQSDVLYNELDVNIVAHE---------VTLDISKIES-LRPEWVYKPYIRSHL 1210
            S++DT +F    + NE D +++ H          +   I K+ + L+P    +P +R+  
Sbjct: 1639 SVLDTVLFPCSEINNEFDNSMIEHSNMSFTVVGTLKWSIEKMFAILKPRKTLRPKLRTSQ 1698

Query: 1209 PPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEYLRGLPF 1030
             P  +      L  + KRNL     +            ++ M+  F      + L+ +  
Sbjct: 1699 APPRQTTTRQALLALNKRNLGGSMVASPLGYYHFAQDSFERMMDCFAVSDWRQKLKKMDK 1758

Query: 1029 IGLTYENVSVWASGIPEEARVKLSEDQYFSV-TELDLTYNTMMLKAKVKPNLSASYATDM 853
            I      +  W        ++ L++ Q  +V +E+    +      K +P  S    T+ 
Sbjct: 1759 IVPNRRILDDWYQFQNVSTKMALNKFQNTTVLSEVKRMISDYEFILKPEPKTS----TET 1814

Query: 852  KP------AQSIQYDQSKLRVAVYSPLVADKVIREKAVLLPNVLVMQRKSPNDMNEFL-C 694
            KP       Q+I + + ++  A + P+V +   R +++L PNVL  + K+  DM EFL  
Sbjct: 1815 KPYSLYPTVQTIMFHKKQVN-AFFGPMVREADRRFRSLLRPNVLYNKGKALQDMEEFLEL 1873

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
             +D     ++    E DFS +D+ Q  +A ++        GL PD L     G    +  
Sbjct: 1874 NYDRSLGNIIA---ENDFSDYDRSQLEVAHALDRVMLTWLGLNPDDLETWMLGHYKHSNF 1930

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
                G+ + +  QR SGD  T  GN  ++M ++A  L      +   M +GDD    +  
Sbjct: 1931 NYSLGLCVYLRYQRKSGDVTTAFGNTVLNMTSMAYSLDLQPEEVRAAMFLGDDSWFQLVD 1990

Query: 333  KPDMY----ELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYT 166
             P +     E  D++   FN   K    + GYFC  YI+    G+ + + DPIKR V   
Sbjct: 1991 SPSLRRRIRECSDKISIHFNGEAKTAYFETGYFCGLYIIDTPSGV-KLLADPIKRAVKLG 2049

Query: 165  DQSVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVERMKDVTSKLER 16
               V + S L E + S KD+M+  +D   Q  L+ AV ER    T  L +
Sbjct: 2050 RWDVKEKSVLYENWLSFKDLMRNYDDECAQELLARAVYERHPRATYDLAK 2099


>gb|ACV13190.1| RNA replicase [Ribgrass mosaic virus] gi|256692860|gb|ACV13194.1| RNA
            replicase [Ribgrass mosaic virus]
          Length = 1601

 Score =  112 bits (279), Expect = 2e-21
 Identities = 113/459 (24%), Positives = 196/459 (42%), Gaps = 9/459 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   I   +P ++ KP
Sbjct: 1133 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQIPKEQPSFL-KP 1189

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDE----VWCKVWQAMLRVFYREG 1060
             IR+         L   L  + KRN+N PD +    +++    V  K W A +       
Sbjct: 1190 KIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYI------- 1242

Query: 1059 TEEYLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPN 880
             ++   G   + LT E+ S W S        +L++  +  +  +D   +  M+K++ K  
Sbjct: 1243 -DKEFSGTNKMSLTRESFSRWLSRQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQK 1299

Query: 879  LSASYATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMN 706
            L  S   +    Q+I Y   K+  A++ P+ A+  +++ E+ V     L   RK+P  + 
Sbjct: 1300 LDLSIQDEYPALQTIVYHSKKIN-AIFGPMFAELTRMLLER-VDSSKFLFYTRKTPGQIE 1357

Query: 705  EFLCRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKY 526
            EF    D   +      LE D S +DK Q    C++ +  + K G+      +  +G + 
Sbjct: 1358 EFFSDLD---STQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRK 1414

Query: 525  RTASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITV 346
             T     AG++  +  QR SGD  T  GN  + +A     ++ +  +I+     GDD  V
Sbjct: 1415 TTLKDYTAGIKTCLWYQRKSGDVSTFIGN-TIIIATCLSSMIPMDKVIK-AAFCGDDSLV 1472

Query: 345  AVRGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYT 166
             +    D+ +++      +N   K    +YGYFC  Y++H   G   +  DP+K +    
Sbjct: 1473 YIPKGMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLG 1531

Query: 165  DQSVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             + + D+  LEE   S  D+   + +    + L  AV E
Sbjct: 1532 CKHIRDSVHLEELRESLCDVTSNLNNCAYFSQLDEAVAE 1570


>gb|AFT83336.1| replicase read-through product [Youcai mosaic virus]
          Length = 1597

 Score =  111 bits (278), Expect = 3e-21
 Identities = 108/455 (23%), Positives = 196/455 (43%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVIKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWKQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D + LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDENHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>gb|AGW21597.1| replicase [Youcai mosaic virus]
          Length = 1597

 Score =  110 bits (276), Expect = 5e-21
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVVKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>ref|NP_543049.1| unnamed protein product [Wasabi mottle virus]
            gi|18146764|dbj|BAB82440.1| RNA replicase readthrough
            protein [Wasabi mottle virus]
          Length = 1597

 Score =  110 bits (276), Expect = 5e-21
 Identities = 109/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   +P ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKEKPVFL-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             IR+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KIRTAAEMPRTAGLIENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDSYIVKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G+  +  T E  S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGIEGMAKTREGFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ V     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-VDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ ++ +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMEKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 KDEVHLEELRRSLCDVASNLNNCAYFSQLDEAVAE 1566


>gb|AEV92949.1| replicase large component [Youcai mosaic virus]
          Length = 1597

 Score =  110 bits (276), Expect = 5e-21
 Identities = 108/455 (23%), Positives = 196/455 (43%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVIKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G+  + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGMDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPAQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>gb|ABB55800.1| replicase read-through product [Youcai mosaic virus]
          Length = 1597

 Score =  110 bits (276), Expect = 5e-21
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVVKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQRLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAQVWRQGHRRTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>gb|AAP79445.1| RNA replicase, read-through component [Youcai mosaic virus]
          Length = 1597

 Score =  110 bits (276), Expect = 5e-21
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVVKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>gb|AAK53541.1| RNA replicase read-through component [Youcai mosaic virus]
          Length = 1597

 Score =  110 bits (276), Expect = 5e-21
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVVKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>gb|AEI69664.1| replicase readthrough component [Ribgrass mosaic virus]
          Length = 1601

 Score =  110 bits (275), Expect = 6e-21
 Identities = 112/459 (24%), Positives = 195/459 (42%), Gaps = 9/459 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   I   +P ++ KP
Sbjct: 1133 DMQFYYDALLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQIPKEQPSFL-KP 1189

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDE----VWCKVWQAMLRVFYREG 1060
             IR+         L   L  + KRN+N PD +    +++    V  K W A +       
Sbjct: 1190 KIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYI------- 1242

Query: 1059 TEEYLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPN 880
             ++   G   + LT E+ S W S        +L++  +  +  +D   +  M+K++ K  
Sbjct: 1243 -DKEFSGTNKMSLTRESFSRWLSKQETSTIGQLADFNFVDLPAVDEYKH--MIKSQPKQK 1299

Query: 879  LSASYATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMN 706
            L  S   +    Q+I Y   K+  A++ P+ A+  +++ E+ V     L   RK+P  + 
Sbjct: 1300 LDLSIQDEYPALQTIVYHSKKIN-AIFGPMFAELTRMLLER-VDSSKFLFYTRKTPGQIE 1357

Query: 705  EFLCRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKY 526
            EF    D   +      LE D S +DK Q    C++ +  + K G+      +  +G + 
Sbjct: 1358 EFFSDLD---STQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRK 1414

Query: 525  RTASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITV 346
             T     AG++  +  QR SGD  T  GN  + +A     ++ +  +I+     GDD  +
Sbjct: 1415 TTLKDYTAGIKTCLWYQRKSGDVSTFIGN-TIIIATCLSSMIPMDKVIK-AAFCGDDSLI 1472

Query: 345  AVRGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYT 166
             +    D+ +++      +N   K    +YGYFC  Y++H   G   +  DP+K +    
Sbjct: 1473 YIPKGIDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLG 1531

Query: 165  DQSVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             + + D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 CKHIRDVVHLEELRESLCDVTSNLNNCAYFSQLDEAVAE 1570


>ref|YP_005476600.1| replicase readthrough component [Ribgrass mosaic virus]
            gi|337271810|gb|AEI69660.1| replicase readthrough
            component [Ribgrass mosaic virus]
          Length = 1601

 Score =  110 bits (275), Expect = 6e-21
 Identities = 112/459 (24%), Positives = 195/459 (42%), Gaps = 9/459 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   I   +P ++ KP
Sbjct: 1133 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQIPKEQPSFL-KP 1189

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDE----VWCKVWQAMLRVFYREG 1060
             IR+         L   L  + KRN+N PD +    +++    V  K W A +       
Sbjct: 1190 KIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYI------- 1242

Query: 1059 TEEYLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPN 880
             ++   G   + LT E+ S W S        +L++  +  +  +D   +  M+K++ K  
Sbjct: 1243 -DKEFSGTNKMSLTRESFSRWLSKQETSTIGQLADFNFVDLPAVDEYKH--MIKSQPKQK 1299

Query: 879  LSASYATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMN 706
            L  S   +    Q+I Y   K+  A++ P+ A+  +++ E+ V     L   RK+P  + 
Sbjct: 1300 LDLSIQDEYPALQTIVYHSKKIN-AIFGPMFAELTRMLLER-VDSSKFLFYTRKTPGQIE 1357

Query: 705  EFLCRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKY 526
            EF    D   +      LE D S +DK Q    C++ +  + K G+      +  +G + 
Sbjct: 1358 EFFSDLD---STQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRK 1414

Query: 525  RTASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITV 346
             T     AG++  +  QR SGD  T  GN  + +A     ++ +  +I+     GDD  +
Sbjct: 1415 TTLKDYTAGIKTCLWYQRKSGDVSTFIGN-TIIIATCLSSMIPMDKVIK-AAFCGDDSLI 1472

Query: 345  AVRGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYT 166
             +    D+ +++      +N   K    +YGYFC  Y++H   G   +  DP+K +    
Sbjct: 1473 YIPKGIDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLG 1531

Query: 165  DQSVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             + + D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 CKHIRDVVHLEELRESLCDVTSNLNNCAYFSQLDEAVAE 1570


>gb|ACB73170.1| replicase read-through product [Youcai mosaic virus]
          Length = 1596

 Score =  110 bits (275), Expect = 6e-21
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1128 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1184

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1185 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVIKE 1240

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1241 FSGTDGMAMTKESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1298

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1299 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPTQIEEFFS 1356

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1357 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLK 1413

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1414 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1471

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1472 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1530

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1531 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1565


>ref|NP_740757.2| replicase [Youcai mosaic virus] gi|10720256|sp|Q66220.2|RDRP_YOMV
            RecName: Full=Replicase large subunit; AltName: Full=182
            kDa protein; Contains: RecName: Full=Replicase small
            subunit; AltName: Full=125 kDa protein; AltName:
            Full=Methyltransferase/RNA helicase; Short=MT/HEL
            gi|30027720|gb|AAB60599.2| replicase [Youcai mosaic
            virus]
          Length = 1597

 Score =  110 bits (274), Expect = 8e-21
 Identities = 107/454 (23%), Positives = 192/454 (42%), Gaps = 4/454 (0%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVVKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVADKV-IREKAVLLPNVLVMQRKSPNDMNEFLCR 691
               +    Q+I Y   K+  A++ P+ ++   +  + +     L   RK+P  + EF   
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLETIDTSKFLFYTRKTPTQIEEFFSD 1358

Query: 690  FDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTASA 511
             D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T   
Sbjct: 1359 LD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLKD 1415

Query: 510  IKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRGK 331
              AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +   
Sbjct: 1416 YTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPKG 1473

Query: 330  PDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSVT 151
             D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + + 
Sbjct: 1474 LDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHIR 1532

Query: 150  DTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
            D   LEE   S  D+   + +    + L  AV E
Sbjct: 1533 DEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>ref|YP_002455905.1| replicase [Cactus mild mottle virus]
          Length = 1649

 Score =  110 bits (274), Expect = 8e-21
 Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 6/457 (1%)
 Frame = -3

Query: 1401 ADMQRVIEHAFPGVSLI--DTAMFQSDVLYNELDVNIVAHEVTLDISKIES---LRPEWV 1237
            +D+Q   +   P  S +  D   F    L  +L V     + TLD+SK +     R    
Sbjct: 1167 SDLQFFYDAVLPNNSTVLNDFDSFTLTALPMQLHVG----DCTLDLSKADPNLYARKTGF 1222

Query: 1236 YKPYIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGT 1057
             KP +R+      + NL   L  + KRN N P       +D    ++ ++++  F+    
Sbjct: 1223 LKPVLRTGTELPRQPNLWENLLALIKRNFNAPYLMGTVDID----RMAESVVNRFFEVYI 1278

Query: 1056 EEYLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNL 877
            +  +    F  L     + W      +   KL+   Y  +  +D  Y+  M+K K K  L
Sbjct: 1279 DGSIESCKFRLLAQNTFAEWLKLQNPDVIGKLANFDYIDLPAIDQYYH--MIKRKPKIKL 1336

Query: 876  SASYATDMKPAQSIQYDQSKLRVAVYSPLVADKV-IREKAVLLPNVLVMQRKSPNDMNEF 700
              S  T+    Q+I Y   ++  A++ P+  +   +   +V     L   RKS +D++EF
Sbjct: 1337 DQSICTEYPALQTIVYHSKEIN-AIFGPIFKELTRVFLDSVDSSRFLFYTRKSADDVSEF 1395

Query: 699  LCRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRT 520
               F   P+       E D S +DK Q  + C++ +  + + G       + A+G +   
Sbjct: 1396 ---FSDLPHVSQTDVYELDISKYDKSQNELHCAIEYKIWERLGFDGFLRDVWAQGHRRTV 1452

Query: 519  ASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAV 340
                +AG++  I  QR SGD  T  GN  ++ AAIA  L+ ++H I+      D +    
Sbjct: 1453 LRDFQAGIKALIWFQRKSGDVTTFIGNTFINAAAIAT-LMPLEHCIKAGFCGDDSVIYLP 1511

Query: 339  RGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQ 160
            +G P + +++ +    +N   K     YGYFC  +I+    G   + PD +K +     +
Sbjct: 1512 KGTP-VGDVQAKANLEWNFEAKLYKKTYGYFCGRFIIPHSTGAIVY-PDVLKVIAKLGAK 1569

Query: 159  SVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             V D   LEE   S  D  K + +    + L  A+ E
Sbjct: 1570 DVKDFDHLEELRVSMCDTYKQLGNCAYVDLLYSAMTE 1606


>gb|ABX57121.1| 58 kDa protein, partial [Cactus mild mottle virus]
          Length = 506

 Score =  110 bits (274), Expect = 8e-21
 Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 6/457 (1%)
 Frame = -3

Query: 1401 ADMQRVIEHAFPGVSLI--DTAMFQSDVLYNELDVNIVAHEVTLDISKIES---LRPEWV 1237
            +D+Q   +   P  S +  D   F    L  +L V     + TLD+SK +     R    
Sbjct: 24   SDLQFFYDAVLPNNSTVLNDFDSFTLTALPMQLHVG----DCTLDLSKADPNLYARKTGF 79

Query: 1236 YKPYIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGT 1057
             KP +R+      + NL   L  + KRN N P       +D    ++ ++++  F+    
Sbjct: 80   LKPVLRTGTELPRQPNLWENLLALIKRNFNAPYLMGTVDID----RMAESVVNRFFEVYI 135

Query: 1056 EEYLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNL 877
            +  +    F  L     + W      +   KL+   Y  +  +D  Y+  M+K K K  L
Sbjct: 136  DGSIESCKFRLLAQNTFAEWLKLQNPDVIGKLANFDYIDLPAIDQYYH--MIKRKPKIKL 193

Query: 876  SASYATDMKPAQSIQYDQSKLRVAVYSPLVADKV-IREKAVLLPNVLVMQRKSPNDMNEF 700
              S  T+    Q+I Y   ++  A++ P+  +   +   +V     L   RKS +D++EF
Sbjct: 194  DQSICTEYPALQTIVYHSKEIN-AIFGPIFKELTRVFLDSVDSSRFLFYTRKSADDVSEF 252

Query: 699  LCRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRT 520
               F   P+       E D S +DK Q  + C++ +  + + G       + A+G +   
Sbjct: 253  ---FSDLPHVSQTDVYELDISKYDKSQNELHCAIEYKIWERLGFDGFLRDVWAQGHRRTV 309

Query: 519  ASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAV 340
                +AG++  I  QR SGD  T  GN  ++ AAIA  L+ ++H I+      D +    
Sbjct: 310  LRDFQAGIKALIWFQRKSGDVTTFIGNTFINAAAIAT-LMPLEHCIKAGFCGDDSVIYLP 368

Query: 339  RGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQ 160
            +G P + +++ +    +N   K     YGYFC  +I+    G   + PD +K +     +
Sbjct: 369  KGTP-VGDVQAKANLEWNFEAKLYKKTYGYFCGRFIIPHSTGAIVY-PDVLKVIAKLGAK 426

Query: 159  SVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             V D   LEE   S  D  K + +    + L  A+ E
Sbjct: 427  DVKDFDHLEELRVSMCDTYKQLGNCAYVDLLYSAMTE 463


>prf||2211419A replicase [Chinese Rape Mosaic Virus]
          Length = 1596

 Score =  110 bits (274), Expect = 8e-21
 Identities = 107/454 (23%), Positives = 192/454 (42%), Gaps = 4/454 (0%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1128 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1184

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1185 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVVKE 1240

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1241 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1298

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVADKV-IREKAVLLPNVLVMQRKSPNDMNEFLCR 691
               +    Q+I Y   K+  A++ P+ ++   +  + +     L   RK+P  + EF   
Sbjct: 1299 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLETIDTSKFLFYTRKTPTQIEEFFSD 1357

Query: 690  FDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTASA 511
             D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T   
Sbjct: 1358 LD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLKD 1414

Query: 510  IKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRGK 331
              AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +   
Sbjct: 1415 YTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPKG 1472

Query: 330  PDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSVT 151
             D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + + 
Sbjct: 1473 LDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHIR 1531

Query: 150  DTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
            D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 DEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1565


>gb|AEI69657.1| replicase readthrough component [Ribgrass mosaic virus]
          Length = 1601

 Score =  110 bits (274), Expect = 8e-21
 Identities = 113/459 (24%), Positives = 194/459 (42%), Gaps = 9/459 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   I   +P ++ KP
Sbjct: 1133 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQIPKEQPSFL-KP 1189

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDE----VWCKVWQAMLRVFYREG 1060
             IR+         L   L  + KRN+N PD +    +++    V  K W A +       
Sbjct: 1190 KIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVAEKFWDAYI------- 1242

Query: 1059 TEEYLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPN 880
             ++   G   + LT E+ S W S        +L++  +  +  +D   +  M+K++ K  
Sbjct: 1243 -DKEFSGTNKMSLTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQK 1299

Query: 879  LSASYATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMN 706
            L  S   +    Q+I Y   K+  A++ P+ A+  +++ E+ V     L   RK+P  + 
Sbjct: 1300 LDLSIQDEYPALQTIVYHSKKIN-AIFGPMFAELTRMLLER-VDSSKFLFYTRKTPGQIE 1357

Query: 705  EFLCRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKY 526
            EF    D   +      LE D S +DK Q    C++ +  + K G+      +  +G + 
Sbjct: 1358 EFFSDLD---STQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQGHRK 1414

Query: 525  RTASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITV 346
             T     AG++  +  QR SGD  T  GN  + +A     ++ +  +I+     GDD  V
Sbjct: 1415 TTLKDYTAGIKTCLWYQRKSGDVSTFIGN-TIIIATCLSSMIPMDKVIK-AAFCGDDSLV 1472

Query: 345  AVRGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYT 166
             +    D+ +++      +N   K    +YGYFC  Y++H   G   +  DP+K +    
Sbjct: 1473 YIPKGMDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLG 1531

Query: 165  DQSVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             + + D   LEE   S  D+   + +      L  AV E
Sbjct: 1532 CKHIRDVVHLEELRESLCDVTSNLNNCAYFLQLDEAVAE 1570


>dbj|BAN15047.1| replicase read-through product [Youcai mosaic virus]
          Length = 1597

 Score =  109 bits (273), Expect = 1e-20
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   RP ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKERPVFM-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             +R+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDAYVIKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G   + +T E+ S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ +     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-IDTSKFLFYTRKTPAQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ +  +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMDKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 RDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAE 1566


>dbj|BAD90598.1| 183 KDa protein [Pepper mild mottle virus]
          Length = 1612

 Score =  109 bits (273), Expect = 1e-20
 Identities = 112/460 (24%), Positives = 199/460 (43%), Gaps = 5/460 (1%)
 Frame = -3

Query: 1404 IADMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISKIESL--RPEWVYK 1231
            ++DMQ   +   PG S I        +   E ++N+   +  LD+SK   L    E   K
Sbjct: 1141 VSDMQYYYDKCLPGNSTILNEYDAVTMQIRENNLNV--KDCVLDMSKSVPLPRESETTLK 1198

Query: 1230 PYIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEE 1051
            P IR+      K  L   L  + KRN N+P+      +++    V       ++ E  ++
Sbjct: 1199 PVIRTAAEKPRKPGLLENLVAMIKRNFNSPELIGVVDIEDTASLVVDKFFDAYFIEEKKK 1258

Query: 1050 YLRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSA 871
              + +P   L+  ++  W     +    +L++  +  +  +D   +  M+K + K  L  
Sbjct: 1259 P-KNIPL--LSRASLERWIEKQEKSTIGQLADFDFIDLPAVDQYRH--MIKQQPKQRLDL 1313

Query: 870  SYATDMKPAQSIQYDQSKLRVAVYSPLVADKVIRE--KAVLLPNVLVMQRKSPNDMNEFL 697
            S  T+    Q+I Y   K+  A++ P+ ++ + R+  +++     +   RK+P  + EF 
Sbjct: 1314 SIQTEYPALQTIVYHSKKIN-ALFGPVFSE-LTRQLLESIDSSRFMFYTRKTPTQIEEFF 1371

Query: 696  CRFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLT-MLAEGTKYRT 520
               D     V    LE D S +DK Q    C++ +  + + G L DFL  +   G +  T
Sbjct: 1372 SDLDSN---VPMDILELDISKYDKSQNEFHCAVEYEIWKRLG-LDDFLAEVWKHGHRKTT 1427

Query: 519  ASAIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAV 340
                 AG++  +  QR SGD  T  GN  + +AA    +L ++ +I+      D I    
Sbjct: 1428 LKDYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMLPMERLIKGAFCGDDSILYFP 1486

Query: 339  RGKPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQ 160
            +G  D  +++      +N   K    +YGYFC  YI+H   G   +  DP+K +     +
Sbjct: 1487 KG-TDFPDIQQGANLLWNFEAKLFRKRYGYFCGRYIIHHDRGCIVYY-DPLKLISKLGAK 1544

Query: 159  SVTDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVERMK 40
             + +   LEE  TS  D+   + +     +L  AV E +K
Sbjct: 1545 HIKNREHLEEFRTSLCDVAGSLNNCAYYTHLDDAVGEVIK 1584


>gb|AHW98777.1| RNA replicase readthrough protein [Wasabi mottle virus]
          Length = 1597

 Score =  109 bits (272), Expect = 1e-20
 Identities = 108/455 (23%), Positives = 195/455 (42%), Gaps = 5/455 (1%)
 Frame = -3

Query: 1398 DMQRVIEHAFPGVSLIDTAMFQSDVLYNELDVNIVAHEVTLDISK---IESLRPEWVYKP 1228
            DMQ   +   PG S I        V  N  D+++   +  +D SK   +   +P ++ KP
Sbjct: 1129 DMQFYYDTLLPGNSTILNEF--DAVTMNLRDISLNVKDCRIDFSKSVQVPKEKPVFL-KP 1185

Query: 1227 YIRSHLPPNAKNNLPNVLQTITKRNLNTPDSSVAASVDEVWCKVWQAMLRVFYREGTEEY 1048
             IR+         L   L  + KRN+N PD +    +++    V    +  F+     + 
Sbjct: 1186 KIRTAAEMPRTAGLIENLVAMIKRNMNAPDLTGTIDIEDTASLV----VEKFWDSYIIKE 1241

Query: 1047 LRGLPFIGLTYENVSVWASGIPEEARVKLSEDQYFSVTELDLTYNTMMLKAKVKPNLSAS 868
              G+  +  T +  S W S        +L++  +  +  +D   +  M+K++ K  L  S
Sbjct: 1242 FSGIEGMARTRQGFSRWLSKQESSTVGQLADFNFVDLPAVDEYKH--MIKSQPKQKLDLS 1299

Query: 867  YATDMKPAQSIQYDQSKLRVAVYSPLVAD--KVIREKAVLLPNVLVMQRKSPNDMNEFLC 694
               +    Q+I Y   K+  A++ P+ ++  +++ E+ V     L   RK+P  + EF  
Sbjct: 1300 IQDEYPALQTIVYHSKKIN-AIFGPMFSELTRMLLER-VDTSKFLFYTRKTPTQIEEFFS 1357

Query: 693  RFDHRPNPVVRTYLEFDFSMFDKCQGLMACSMHWNKYAKFGLLPDFLTMLAEGTKYRTAS 514
              D   +      LE D S +DK Q    C++ +  + K G+      +  +G +  T  
Sbjct: 1358 DLD---SSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWRQGHRKTTLK 1414

Query: 513  AIKAGVRMKIPTQRGSGDSDTLDGNCDVSMAAIAEFLLTIQHMIEFVMIMGDDITVAVRG 334
               AG++  +  QR SGD  T  GN  + +AA    ++ ++ +I+     GDD  + +  
Sbjct: 1415 DYTAGIKTCLWYQRKSGDVTTFIGN-TIIIAACLSSMIPMEKVIK-AAFCGDDSLIYIPK 1472

Query: 333  KPDMYELEDRVMRTFNLAIKYTISQYGYFCSGYIVHLQDGLSRWIPDPIKRLVSYTDQSV 154
              D+ +++     T+N   K    +YGYFC  Y++H   G   +  DP+K +     + +
Sbjct: 1473 GLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYY-DPLKLISKLGCKHI 1531

Query: 153  TDTSPLEEQYTSHKDMMKGIEDIQVQNYLSYAVVE 49
             D   LEE   S  D+   + +    + L  AV E
Sbjct: 1532 KDEVHLEELRRSLCDVASNLNNCAYFSQLDEAVAE 1566