BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00051488
         (2912 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_041192.1| 125.7 kd protein [Alfalfa mosaic virus] gi|1372...   103   8e-19
ref|NP_604469.1| putative methyltransferase/helicase [Apple mosa...   103   8e-19
ref|YP_611154.1| putative viral replicase [Prune dwarf virus] gi...   103   1e-18
emb|CBX36144.1| 126 kDa protein [Alfalfa mosaic virus]                102   1e-18
ref|YP_164801.1| replicase [Fragaria chiloensis latent virus] gi...   102   1e-18
gb|AGV15824.1| P1 [Alfalfa mosaic virus]                              102   2e-18
gb|ADO85715.1| P1 protein [Alfalfa mosaic virus]                      102   2e-18
gb|ACM63154.1| p1 protein, partial [Bacopa chlorosis virus]           101   3e-18
ref|YP_008470969.1| replicase protein [Ageratum latent virus] gi...   100   5e-18
gb|AFQ94057.1| P1 protein, partial [Alfalfa mosaic virus]             100   9e-18
gb|ACU44508.1| p1 protein [Parietaria mottle virus]                   100   9e-18
ref|YP_006446.1| p1 protein [Parietaria mottle virus] gi|4064678...   100   9e-18
gb|AKE49129.1| replicase [Tobacco streak virus]                        99   2e-17
gb|AGN29722.1| replicase protein [Strawberry necrotic shock virus]     98   3e-17
ref|YP_941474.2| replicase [Strawberry necrotic shock virus] gi|...    98   3e-17
gb|ACT67442.1| replicase [Tobacco streak virus]                        98   4e-17
gb|AGN29712.1| replicase protein [Tobacco streak virus]                98   4e-17
ref|YP_002455928.1| replicase [Asparagus virus 2] gi|215536122|g...    97   6e-17
ref|NP_620772.1| putative viral replicase [Tobacco streak virus]...    97   6e-17
gb|AAB71767.1| putative replicase, partial [Asparagus virus 2]         97   6e-17

>ref|NP_041192.1| 125.7 kd protein [Alfalfa mosaic virus]
            gi|137230|sp|P03589.1|1A_AMVLE RecName: Full=Replication
            protein 1a; Includes: RecName: Full=ATP-dependent
            helicase; Includes: RecName: Full=Methyltransferase
            gi|331425|gb|AAA46289.1| 125.7 kd protein [Alfalfa mosaic
            virus]
          Length = 1126

 Score =  103 bits (257), Expect = 8e-19
 Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 7/353 (1%)
 Frame = -3

Query: 2526 VKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVV 2347
            +K+   L + QQ++L +       VF N+    H  A A R+L+T   +         ++
Sbjct: 66   LKISFSLDATQQNILRANFPGRRTVFSNSSSSSHCFAAAHRLLETDFVYRCFGNTVDSII 125

Query: 2346 DIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQ---DISSSLDYCVDGA 2182
            D+GGN++ H K    +VH C    + RD  R+  R  +  + V+   +I    DYC+D  
Sbjct: 126  DLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILSLKSYVRKHPEIVGEADYCMDTF 185

Query: 2181 QNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMY 2002
            Q CS  A    AIHS  D+    L+  +D KG+      +    +M+  ++G  P  ++ 
Sbjct: 186  QKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFICTMMVDADMLIHNEGEIPNFNVR 245

Query: 2001 YEKDVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPYAYRYDIRYVKYGVAA 1822
            +E D +KD I F F ++ +  Y  ++SLL  Y       + H+  AYR + +    GV  
Sbjct: 246  WEIDRKKDLIHFDFIDEPNLGYSHRFSLLKHYLTYNAVDLGHA--AYRIERKQDFGGVMV 303

Query: 1821 FSVIRLEKDKLGV--QLPETRYRYVDNSDVVRVRSWKYDVNSSAGPKSDRSYVPFEVFVP 1648
              +       LG   ++P +  R     + V+ +   + VN      S ++ V  +V V 
Sbjct: 304  IDLTY----SLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVNEGYYHHSYQTAVRRKVLVD 359

Query: 1647 TDMFDFLYKFGMSNDTENPDKPMTVDAVRAMVRSYNVMRKTNNVALTGQTVIS 1489
              +   + +        N D    + ++  M+ S      TN+  + G T+IS
Sbjct: 360  KKVLTRVTEVAFRQFRPNADAHSAIQSIATMLSS-----STNHTIIGGVTLIS 407


>ref|NP_604469.1| putative methyltransferase/helicase [Apple mosaic virus]
            gi|5911259|gb|AAD55722.1|AF174584_1 putative
            methyltransferase/helicase [Apple mosaic virus]
          Length = 1046

 Score =  103 bits (257), Expect = 8e-19
 Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 5/227 (2%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            DV D+N       ++  +   +T+ QQ+ L        + F  +    H  A A R+L+T
Sbjct: 35   DVFDRNLPKRPEGEKFNISFAVTAEQQAFLRRNFPGRDIKFTQSDSHSHNYAAAHRLLET 94

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNRNTTALV---- 2224
               +         V+D+GGN++ H KR   +VHSC    + RD  R   R  +       
Sbjct: 95   DFIYGCFGTVDEPVIDLGGNFISHLKRRRYNVHSCCPLLDDRDGARFTERMISLKTYYRT 154

Query: 2223 -QDISSSLDYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPE 2047
             QD     DYC    + C   A   +AIH+  D+  E L K + NKG + +   +   P 
Sbjct: 155  HQDEKHEADYCKCRFEECDRKADYVMAIHATSDLSLEKLCKALANKGTKKMIMSIMMDPN 214

Query: 2046 MIERDQGFFPQLDMYYEKDVQKDTISFHFHNDSSFDYVQKYSLLLRY 1906
            M+ RD G  P  ++ ++ D + DTI F F +     Y  K+S+L +Y
Sbjct: 215  MLIRDYGEIPNFNVRWKIDHEADTIKFDFIDAPCLGYQHKFSILKQY 261


>ref|YP_611154.1| putative viral replicase [Prune dwarf virus]
            gi|1762420|gb|AAB39537.1| putative viral replicase [Prune
            dwarf virus]
          Length = 1055

 Score =  103 bits (256), Expect = 1e-18
 Identities = 73/275 (26%), Positives = 124/275 (45%), Gaps = 9/275 (3%)
 Frame = -3

Query: 2574 KDVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILD 2395
            K  L+K F   +   ++K+   LT+ QQ++L       +++F N+    H+ A A R+L+
Sbjct: 39   KQSLNKTFGLNDESKQLKISFDLTAEQQTLLKRHFPGRSVIFSNSSSSSHSFAAAHRLLE 98

Query: 2394 THRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNRNTTALVQ-- 2221
            T   +         ++D+GGNY+ H K+   +VH C    + RD      R+T  L+Q  
Sbjct: 99   TDFIYQCFGNTDETILDLGGNYISHLKQRRYNVHCCCPLLDVRD----CARHTERLMQYT 154

Query: 2220 -------DISSSLDYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVL 2062
                   D     ++C +  Q+CS+     +AIHS  D+    L + +  KG+      +
Sbjct: 155  TYKTSRPDEVHEPNFCENTFQDCSLQGKYAMAIHSTSDLPLGELCESLRKKGVMKFICSV 214

Query: 2061 HYSPEMIERDQGFFPQLDMYYEKDVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSV 1882
               PEM  +D+G     ++ +  D  KD I F F +     Y  KYS L+ Y      +V
Sbjct: 215  MIDPEMYIKDRGHIDHFNLDWHVDKDKDRIYFDFVDAPCLGYDHKYSTLMEYLH--YNAV 272

Query: 1881 DHSPYAYRYDIRYVKYGVAAFSVIRLEKDKLGVQL 1777
            D    A+R + +   +GV    +      K G++L
Sbjct: 273  DLGDAAFRVERKTDFHGVMIIDITYCSGYKPGIEL 307


>emb|CBX36144.1| 126 kDa protein [Alfalfa mosaic virus]
          Length = 1126

 Score =  102 bits (255), Expect = 1e-18
 Identities = 87/353 (24%), Positives = 154/353 (43%), Gaps = 7/353 (1%)
 Frame = -3

Query: 2526 VKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVV 2347
            +K+   L + QQ++L +      +VF N+    H  A A R+L+T   +         ++
Sbjct: 66   LKISFSLDATQQNILRTNFPGRRIVFSNSSSSSHCFAAAHRLLETDFVYRCFGNTVDSII 125

Query: 2346 DIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQ---DISSSLDYCVDGA 2182
            D+GGN++ H K    +VH C    + RD  R+  R  +  + V+   +I    DYC+D  
Sbjct: 126  DLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILSLKSYVRKHPEIVGEADYCMDTF 185

Query: 2181 QNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMY 2002
            Q CS  A    AIHS  D+    L+  +D KG+      +    +M+  ++G  P  ++ 
Sbjct: 186  QKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFICTMMVDADMLIHNEGEIPNFNVR 245

Query: 2001 YEKDVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPYAYRYDIRYVKYGVAA 1822
            +E D + D I F F ++ +  Y  ++SLL  Y       + H+  AYR + +    GV  
Sbjct: 246  WEIDRKNDLIHFDFIDEPNLGYSHRFSLLKHYLTYNAVDLGHA--AYRIERKQDFGGVMV 303

Query: 1821 FSVIRLEKDKLGV--QLPETRYRYVDNSDVVRVRSWKYDVNSSAGPKSDRSYVPFEVFVP 1648
              +       LG   ++P +  R     + V+ +   + VN      S ++ V  +V V 
Sbjct: 304  IDLTY----SLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVNEGYYHHSYQTAVRRKVLVD 359

Query: 1647 TDMFDFLYKFGMSNDTENPDKPMTVDAVRAMVRSYNVMRKTNNVALTGQTVIS 1489
              +   + +        N D    + ++  M+ S      TN+  + G T+IS
Sbjct: 360  KKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLSS-----STNHTIIGGVTLIS 407


>ref|YP_164801.1| replicase [Fragaria chiloensis latent virus]
            gi|55976927|gb|AAV68306.1| replicase [Fragaria chiloensis
            latent virus]
          Length = 1083

 Score =  102 bits (255), Expect = 1e-18
 Identities = 84/337 (24%), Positives = 154/337 (45%), Gaps = 10/337 (2%)
 Frame = -3

Query: 2685 SDAVQRQVVRAILTRGKLFEWASGFYDIRDMLEGQLDKDVLDKNFQAMNARDEVKLRVKL 2506
            S+ ++RQ        GKLF               +  K ++ ++F + +A   + +  +L
Sbjct: 22   SETLKRQCTDETTAIGKLF--------------AEEAKRLVTQSFGS-DAAKPLNVSFQL 66

Query: 2505 TSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVVDIGGNYL 2326
            ++ QQS+L        + F N+    H+ A A R+L+T   +S      + ++D+GGN++
Sbjct: 67   SAEQQSLLKRNFPGRVIQFSNSSSSSHSFAAAHRLLETDFVYSCFGNKNATILDLGGNHV 126

Query: 2325 MHAKRGDTHVHSCMLSNNTRDM----HRIVNRNT--TALVQDISSSLDYCVDGAQNCSVA 2164
             H K    +VH C    + RD      R+++ +T   +  Q+I   +++C +  Q+C   
Sbjct: 127  SHLKMERHNVHCCCPLLDGRDCARHTERLISYSTFKASHPQEIHD-MNFCENAFQHCDEK 185

Query: 2163 ATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMYYEKDVQ 1984
            A   +AIHS  D+  ++L K +  KG+R     +   P+M+ +D+GF    ++ +  D  
Sbjct: 186  ADFAMAIHSTSDLPLDVLCKALLKKGVRKFICTIMIDPDMLVKDRGFIEHFNVSWTIDRY 245

Query: 1983 KDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPYAYRYDIRYVKYGVAAFSVIRL 1804
             D I F F++     Y  KYS L++Y      +VD    AYR + +    GV    + R 
Sbjct: 246  ADRIWFDFNDAPCLGYDHKYSTLMQYLT--YNAVDLGDSAYRVERKQDFSGVMVIDITRC 303

Query: 1803 EKDKLGVQLPETR----YRYVDNSDVVRVRSWKYDVN 1705
                 G+ L   R    +  + N  +V +   + +VN
Sbjct: 304  AGFVPGIPLNCGRSCAWFTKIRNKTIVNISDIRDEVN 340


>gb|AGV15824.1| P1 [Alfalfa mosaic virus]
          Length = 1126

 Score =  102 bits (254), Expect = 2e-18
 Identities = 87/353 (24%), Positives = 154/353 (43%), Gaps = 7/353 (1%)
 Frame = -3

Query: 2526 VKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVV 2347
            +K+   L + QQ++L +      +VF N+    H  A A R+L+T   +         ++
Sbjct: 66   LKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFAAAHRLLETDFVYRCFGNTVDSII 125

Query: 2346 DIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQ---DISSSLDYCVDGA 2182
            D+GGN++ H K    +VH C    + RD  R+  R  +  + V+   +I    DYC+D  
Sbjct: 126  DLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILSLKSYVRKHPEIVGEADYCMDTF 185

Query: 2181 QNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMY 2002
            Q CS  A    AIHS  D+    L+  +D KG+      +    +M+  ++G  P  ++ 
Sbjct: 186  QKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFICTMMVMADMLIHNEGEIPNFNVR 245

Query: 2001 YEKDVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPYAYRYDIRYVKYGVAA 1822
            +E D + D I F F ++ +  Y  ++SLL  Y       + H+  AYR + +    GV  
Sbjct: 246  WEIDHKNDLIHFDFIDEPNLGYSHRFSLLKHYLTYNAVDLGHA--AYRIERKQDFGGVMV 303

Query: 1821 FSVIRLEKDKLGV--QLPETRYRYVDNSDVVRVRSWKYDVNSSAGPKSDRSYVPFEVFVP 1648
              +       LG   ++P +  R     + V+ +   + VN      S ++ V  +V V 
Sbjct: 304  IDLTY----SLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVNEGYYHHSYQTAVRRKVLVD 359

Query: 1647 TDMFDFLYKFGMSNDTENPDKPMTVDAVRAMVRSYNVMRKTNNVALTGQTVIS 1489
              +   + +        N D    + ++  M+ S      TN+  + G T+IS
Sbjct: 360  KKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLSS-----STNHTIIGGVTLIS 407


>gb|ADO85715.1| P1 protein [Alfalfa mosaic virus]
          Length = 1126

 Score =  102 bits (254), Expect = 2e-18
 Identities = 87/353 (24%), Positives = 153/353 (43%), Gaps = 7/353 (1%)
 Frame = -3

Query: 2526 VKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVV 2347
            +K+   L + QQ++L +      +VF N+    H  A A R+L+T   +         ++
Sbjct: 66   LKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFAAAHRLLETDFVYRCFGNTVDSII 125

Query: 2346 DIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQ---DISSSLDYCVDGA 2182
            D+GGN++ H K    +VH C    + RD  R+  R  +  + V+   +I    DYC+D  
Sbjct: 126  DLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILSLKSYVRKHPEIVGEADYCMDTF 185

Query: 2181 QNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMY 2002
            Q CS  A    AIHS  D+    L+  +D KG+      +    +M+   +G  P  ++ 
Sbjct: 186  QKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFICTMMVDADMLIHSEGEIPNFNVR 245

Query: 2001 YEKDVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPYAYRYDIRYVKYGVAA 1822
            +E D + D I F F ++ +  Y  ++SLL  Y       + H+  AYR + +    GV  
Sbjct: 246  WEIDHKNDLIHFDFIDEPNLGYSHRFSLLKHYLTYNAVDLGHA--AYRIERKQDFGGVMV 303

Query: 1821 FSVIRLEKDKLGV--QLPETRYRYVDNSDVVRVRSWKYDVNSSAGPKSDRSYVPFEVFVP 1648
              +       LG   ++P +  R     + V+ +   + VN      S ++ V  +V V 
Sbjct: 304  IDLTY----SLGFVPKMPHSNGRSCAWYNRVKGQMVVHTVNEGYYHHSYQTAVRRKVLVD 359

Query: 1647 TDMFDFLYKFGMSNDTENPDKPMTVDAVRAMVRSYNVMRKTNNVALTGQTVIS 1489
              +   + +        N D    + ++  M+ S      TN+  + G T+IS
Sbjct: 360  KKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLSS-----STNHTIIGGVTLIS 407


>gb|ACM63154.1| p1 protein, partial [Bacopa chlorosis virus]
          Length = 1054

 Score =  101 bits (252), Expect = 3e-18
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 12/239 (5%)
 Frame = -3

Query: 2532 DEVKLRV--KLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAG 2359
            D  KL V  +LTS +++ L S+   L + F ++    H+ A A R+ +T   +   +   
Sbjct: 62   DFQKLNVGFQLTSDEKNALKSSFPGLEICFKDSCHSSHSFAAAHRVCETTEVYKRFNTKK 121

Query: 2358 SRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQDISSSL--DYCV 2191
             +++D+GGNY+ HAK+G  +VHSC    + RD  R  +R  +  + V+     L  D+C 
Sbjct: 122  EKIIDLGGNYVTHAKQGRDNVHSCCPILDVRDGARHTDRYMSLASAVEKHHRDLPVDFCC 181

Query: 2190 DGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQL 2011
               ++C+V A   +AIHS+ DI    ++     +G+R L   +   P M+  D G  P L
Sbjct: 182  KKFEDCNVQAPYAMAIHSISDIPITTVAHHCVRRGVRKLIATVMMDPAMLIYDSGHMPLL 241

Query: 2010 DMYYEK------DVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPYAYRYD 1852
            ++ +EK      D  K  I FHF +     Y   +S+L +Y  +    V    YAYR +
Sbjct: 242  NVNWEKEDVKCGDDFKTLIHFHFVDAPGLSYSHDFSVLSQYMTTNQVIVGEG-YAYRVE 299


>ref|YP_008470969.1| replicase protein [Ageratum latent virus] gi|509391870|gb|AGN29717.1|
            replicase protein [Ageratum latent virus]
          Length = 1097

 Score =  100 bits (250), Expect = 5e-18
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 10/250 (4%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  +LT  +++ L ++   L +VF ++    H+ A A R+ +T
Sbjct: 57   DTTNGDFQKLN------VGFRLTPDEKNALKTSFPGLEIVFKDSCQSSHSFAAAHRVCET 110

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               +   +    +++D+GGNY+ HAK G  +VHSC    + RD  R  +R  +  A V+ 
Sbjct: 111  LDIYKRFNTKTEKIIDLGGNYVTHAKHGRANVHSCCPILDVRDGARHTDRYISLAAAVEK 170

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    ++C V A   +AIHS+ DI    ++K    +G+R L   +   P M
Sbjct: 171  HHKELPVDFCCHKFEDCDVKAPYAMAIHSISDIPIATVAKHCVRRGVRKLIASVMMDPAM 230

Query: 2043 IERDQGFFPQLDMYYEKD------VQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSV 1882
            +  ++G  P L++ +EK+        K  I FHF +     Y   +S+L +Y  +    V
Sbjct: 231  MLYERGHIPLLNVDWEKEDVIDGGTSKTLIHFHFVDAPGLSYSHDFSILSQYMVTNQVIV 290

Query: 1881 DHSPYAYRYD 1852
                Y+YR +
Sbjct: 291  GDG-YSYRVE 299


>gb|AFQ94057.1| P1 protein, partial [Alfalfa mosaic virus]
          Length = 348

 Score =  100 bits (248), Expect = 9e-18
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 5/225 (2%)
 Frame = -3

Query: 2526 VKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVV 2347
            +K+   L + QQ++L +      +VF N+    H  A A R+L+T   +         ++
Sbjct: 60   LKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFAAAHRLLETDFVYRCFGNTVDSII 119

Query: 2346 DIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQ---DISSSLDYCVDGA 2182
            D+GGN++ H K    +VH C    + RD  R+  R  +  + V+   +I    DYC+D  
Sbjct: 120  DLGGNFVSHMKVKRHNVHCCCPILDARDGARLTERILSLKSYVRKHPEIVGEADYCMDTF 179

Query: 2181 QNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMY 2002
            Q CS  A    AIHS  D+    L+  +D KG+      +    +M+  ++G  P  ++ 
Sbjct: 180  QKCSRRADYAFAIHSTSDLDVGELACSLDQKGVMKFICTMMVDADMLIHNEGEIPNFNVR 239

Query: 2001 YEKDVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHSPY 1867
            +E D + D I F F ++ +  Y  ++SLL  Y       + H+ Y
Sbjct: 240  WEIDHKNDLIHFDFIDEPNLGYSHRFSLLKHYLTYNAVDLGHAAY 284


>gb|ACU44508.1| p1 protein [Parietaria mottle virus]
          Length = 1097

 Score =  100 bits (248), Expect = 9e-18
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 10/232 (4%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D+ + +FQ +N      +  +LT+ +++ L ++   L + F ++    H+ A A R+ +T
Sbjct: 55   DINNGDFQKLN------VGFQLTADEKNALKTSFPGLEIAFKDSCQSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               +   +    +++D+GGNY+ HAK G ++VHSC    + RD  R  +R  +  + V+ 
Sbjct: 109  LDVYKKFNTKTEKIIDLGGNYVTHAKHGRSNVHSCCPILDVRDGARHTDRYMSLASAVEK 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    ++C+V A   +AIHS+ DI    ++K    +G+R L   +   P M
Sbjct: 169  HHKDLPVDFCCKKFEDCNVQAPYAMAIHSISDIPITTVAKHCVRRGVRKLIATVMMDPAM 228

Query: 2043 IERDQGFFPQLDMYYEK-DVQ-----KDTISFHFHNDSSFDYVQKYSLLLRY 1906
            +  D G  P L++ +EK DV+     K  I FHF +     Y   +S+L +Y
Sbjct: 229  MIYDSGHIPFLNVDWEKEDVECDGKTKTLIHFHFVDAPGLSYSHDFSVLSQY 280


>ref|YP_006446.1| p1 protein [Parietaria mottle virus] gi|40646787|gb|AAR88259.1| p1
            protein [Parietaria mottle virus]
          Length = 1098

 Score =  100 bits (248), Expect = 9e-18
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 10/232 (4%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D+ + +FQ +N      +  +LT+ +++ L ++   L + F ++    H+ A A R+ +T
Sbjct: 55   DINNGDFQKLN------VGFQLTADEKNALKTSFPGLEIAFKDSCQSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               +   +    +++D+GGNY+ HAK G ++VHSC    + RD  R  +R  +  + V+ 
Sbjct: 109  LDVYKKFNTKTEKIIDLGGNYVTHAKHGRSNVHSCCPILDVRDGARHTDRYMSLASAVEK 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    ++C+V A   +AIHS+ DI    ++K    +G+R L   +   P M
Sbjct: 169  HHKDLPVDFCCKKFEDCNVQAPYAMAIHSISDIPITTVAKHCVRRGVRKLIATVMMDPAM 228

Query: 2043 IERDQGFFPQLDMYYEK-DVQ-----KDTISFHFHNDSSFDYVQKYSLLLRY 1906
            +  D G  P L++ +EK DV+     K  I FHF +     Y   +S+L +Y
Sbjct: 229  MIYDSGHIPFLNVDWEKEDVECDGKVKPLIHFHFVDAPGLSYSHDFSVLSQY 280


>gb|AKE49129.1| replicase [Tobacco streak virus]
          Length = 1093

 Score = 99.0 bits (245), Expect = 2e-17
 Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 8/248 (3%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  +LT  +++ L S    L + F ++    H+ A A R+ +T
Sbjct: 55   DTSNGDFQKLN------VGFRLTPDEKNALKSNFPGLEIAFKDSCHSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               ++       R++D+GGNY+ HAK+G ++VHSC    + RD  R  +R  +  A +++
Sbjct: 109  LDIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLAASIEN 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    + C V A   +A+HS+ DI    ++     +G+R L   +   P M
Sbjct: 169  RHRELPVDFCCHKFEECDVKAPFAMAVHSISDIPISTVAAHCVRRGVRKLIASVMMDPLM 228

Query: 2043 IERDQGFFPQLDMYYEK----DVQKDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDH 1876
            +  D+G  P L++ +EK    D  K  I FHF +     Y   +++L +Y  +    V++
Sbjct: 229  MLYDKGHIPLLNVDWEKEDDIDSGKTLIHFHFVDAPGLSYSHDFNVLSQYMVTNQVIVNN 288

Query: 1875 SPYAYRYD 1852
            S Y++R +
Sbjct: 289  S-YSFRVE 295


>gb|AGN29722.1| replicase protein [Strawberry necrotic shock virus]
          Length = 1093

 Score = 98.2 bits (243), Expect = 3e-17
 Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 11/251 (4%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  ++T  +++ L S    L +VF ++    H+ A A R+ +T
Sbjct: 55   DTSNGDFQKLN------VGFRMTPDEKNALKSNFPGLDIVFRDSCYSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               ++  +    +++D+GGNY+ HAK+G  +VHSC    + RD  R  +R  +  A V+ 
Sbjct: 109  LDIYNRFNTRTEKIIDLGGNYVTHAKQGRANVHSCCPILDVRDGARHTDRYISLAASVEK 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    + C V A   +AIHS+ DI    ++     +G+R L   +   P M
Sbjct: 169  KHRELPVDFCCHKFEECQVKAPFAMAIHSISDIPITTVAAHCVRRGVRKLIASVMMDPLM 228

Query: 2043 IERDQGFFPQLDMYYEK-DVQ------KDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCS 1885
            +  D+G  P L++ +EK DV+      +  ISFHF +     Y   ++ L +Y  +   +
Sbjct: 229  MIYDKGHIPLLNVTWEKVDVEESDGNFRTMISFHFDDAPGLSYSHDFNTLAKYMTTNQVT 288

Query: 1884 VDHSPYAYRYD 1852
            V+ + Y++R +
Sbjct: 289  VNDT-YSFRVE 298


>ref|YP_941474.2| replicase [Strawberry necrotic shock virus]
            gi|154795184|gb|ABC47325.3| replicase [Strawberry
            necrotic shock virus]
          Length = 1090

 Score = 98.2 bits (243), Expect = 3e-17
 Identities = 70/251 (27%), Positives = 126/251 (50%), Gaps = 11/251 (4%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  ++T  +++ L S    L +VF ++    H+ A A R+ +T
Sbjct: 55   DTSNGDFQKLN------VGFRMTPDEKNALKSNFPGLDIVFRDSCYSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               ++  +    +++D+GGNY+ HAK+G  +VHSC    + RD  R  +R  +  A V+ 
Sbjct: 109  LDIYNRFNTRTEKIIDLGGNYVTHAKQGRANVHSCCPILDVRDGARHTDRYISLAASVEK 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    + C V A   +AIHS+ DI    ++     +G+R L   +   P M
Sbjct: 169  KHRELPVDFCCHKFEECQVKAPFAMAIHSISDIPITTVAAHCVRRGVRKLIASVMMDPLM 228

Query: 2043 IERDQGFFPQLDMYYEK-DVQ------KDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCS 1885
            +  D+G  P L++ +EK DV+      +  ISFHF +     Y   ++ L +Y  +   +
Sbjct: 229  MIYDKGHIPLLNVTWEKVDVEESDGNFRTMISFHFDDAPGLSYSHDFNTLAKYMTTNQVT 288

Query: 1884 VDHSPYAYRYD 1852
            V+ + Y++R +
Sbjct: 289  VNDT-YSFRVE 298


>gb|ACT67442.1| replicase [Tobacco streak virus]
          Length = 1092

 Score = 97.8 bits (242), Expect = 4e-17
 Identities = 68/247 (27%), Positives = 127/247 (51%), Gaps = 7/247 (2%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  +LT  +++ L +    L + F ++    H+ A A R+ +T
Sbjct: 55   DTSNGDFQKLN------VGFRLTPDEKNALKANFPGLEIAFKDSCHSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               ++       R++D+GGNY+ HAK+G ++VHSC    + RD  R  +R  +  A V++
Sbjct: 109  LEIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLAASVEN 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  ++C    + C V A   +A+HS+ DI    +      +G+R L   +   P M
Sbjct: 169  RHRKLPVNFCCHKFEECDVKAPFAMAVHSINDIPISTVVTHCVRRGVRKLIASVLMDPLM 228

Query: 2043 IERDQGFFPQLDMYYEK-DVQ--KDTISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDHS 1873
            +  D+G  P L++Y+EK D++  K  I FHF +    +Y   +++L +Y  +    V+++
Sbjct: 229  MLYDKGHIPLLNVYWEKEDIEEGKTLIHFHFVDAPGLNYSHDFNVLSQYMITNQVIVNNT 288

Query: 1872 PYAYRYD 1852
             Y++R +
Sbjct: 289  -YSFRVE 294


>gb|AGN29712.1| replicase protein [Tobacco streak virus]
          Length = 1094

 Score = 97.8 bits (242), Expect = 4e-17
 Identities = 68/248 (27%), Positives = 126/248 (50%), Gaps = 8/248 (3%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  +LT  +++ L +    L + F ++    H+ A A R+ +T
Sbjct: 55   DTSNGDFQKLN------VGFRLTPDEKNALKANFPGLEIAFRDSCHSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               ++       R++D+GGNY+ HAK+G ++VHSC    + RD  R  +R  +  A V++
Sbjct: 109  LDIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLAASVEN 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    + C V A   +A+HS+ DI    ++     +G+R L   +   P M
Sbjct: 169  RHRELPVDFCCHKFEECDVKAPFAMAVHSISDIPITTVAAHCVRRGVRKLIASVMMDPLM 228

Query: 2043 IERDQGFFPQLDMYYEKDVQKDT----ISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDH 1876
            +  D+G  P L++ +EK+  ++T    I FHF +     Y   +++L +Y  +    V++
Sbjct: 229  MLYDKGHIPLLNVDWEKEDVEETGKTLIHFHFVDAPGLSYSHDFNILSQYMVTNQVIVNN 288

Query: 1875 SPYAYRYD 1852
            S Y++R +
Sbjct: 289  S-YSFRVE 295


>ref|YP_002455928.1| replicase [Asparagus virus 2] gi|215536122|gb|ACJ68508.1| replicase
            [Asparagus virus 2]
          Length = 1076

 Score = 97.4 bits (241), Expect = 6e-17
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
 Frame = -3

Query: 2457 LVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLS 2278
            L F N+    H+ A A R+ +T   +       + ++DIGGN+  H+K G  +VHSC   
Sbjct: 80   LQFRNSSYSSHSFAAAHRVCETDYIYGRFQTENTTIIDIGGNFCTHSKMGRDNVHSCCPI 139

Query: 2277 NNTRDMHRIVNR-----NTTALVQDISSSLDYCVDGAQNCSVAATEGIAIHSVQDIQPEM 2113
             + RD  R  +R      +     D    L+YC +  + C V+A   +AIHS+ DI    
Sbjct: 140  LDVRDGARYTDRFMSVAGSLEKQPDRELRLNYCSNRFEECDVSAPWAMAIHSISDIPITT 199

Query: 2112 LSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMYYEKDVQKD----TISFHFHNDSS 1945
            + K    +G++ L   +   P M+    GF P+L++ +E + + D     ISFHF +   
Sbjct: 200  VVKHCFRRGVKKLIASIMMDPMMLIATTGFIPRLNVKWEIETESDGKSRRISFHFVDAPG 259

Query: 1944 FDYVQKYSLLLRY 1906
              Y   Y +L++Y
Sbjct: 260  LSYSHNYDVLMQY 272


>ref|NP_620772.1| putative viral replicase [Tobacco streak virus]
            gi|81984848|sp|P89680.1|1A_TOBSV RecName:
            Full=Replication protein 1a; Includes: RecName:
            Full=ATP-dependent helicase; Includes: RecName:
            Full=Methyltransferase gi|1857427|gb|AAB48983.1| putative
            viral replicase [Tobacco streak virus]
          Length = 1094

 Score = 97.4 bits (241), Expect = 6e-17
 Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 8/248 (3%)
 Frame = -3

Query: 2571 DVLDKNFQAMNARDEVKLRVKLTSHQQSMLISANLDLALVFDNTHIVGHALAYAQRILDT 2392
            D  + +FQ +N      +  +LT  +++ L +    L + F ++    H+ A A R+ +T
Sbjct: 55   DTSNGDFQKLN------VGFRLTPDEKNALKANFPGLEIAFRDSCHSSHSFAAAHRVCET 108

Query: 2391 HRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLSNNTRDMHRIVNR--NTTALVQD 2218
               ++       R++D+GGNY+ HAK+G ++VHSC    + RD  R  +R  +  A V++
Sbjct: 109  LNIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLAASVEN 168

Query: 2217 ISSSL--DYCVDGAQNCSVAATEGIAIHSVQDIQPEMLSKIMDNKGMRHLAGVLHYSPEM 2044
                L  D+C    + C V A   +AIHS+ DI    ++     +G+R L   +   P M
Sbjct: 169  RHRELPVDFCCHKFEECDVKAPFAMAIHSISDIPISTVATHCVRRGVRKLIASVMMDPLM 228

Query: 2043 IERDQGFFPQLDMYYEKDVQKDT----ISFHFHNDSSFDYVQKYSLLLRYSQSWTCSVDH 1876
            +  D+G  P L++ +EK+  ++T    I FHF +     Y   +  L +Y  +    V++
Sbjct: 229  MLYDKGHIPLLNVDWEKEDVEETGKTLIHFHFVDAPGLSYSHDFDTLSQYMITNQVIVNN 288

Query: 1875 SPYAYRYD 1852
            S Y++R +
Sbjct: 289  S-YSFRVE 295


>gb|AAB71767.1| putative replicase, partial [Asparagus virus 2]
          Length = 244

 Score = 97.4 bits (241), Expect = 6e-17
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
 Frame = -3

Query: 2457 LVFDNTHIVGHALAYAQRILDTHRCFSLISRAGSRVVDIGGNYLMHAKRGDTHVHSCMLS 2278
            L F N+    H+ A A R+ +T   +       + ++DIGGN+  H+K G  +VHSC   
Sbjct: 5    LQFRNSSYSSHSFAAAHRVCETDYIYGRFQTENTTIIDIGGNFCTHSKMGRDNVHSCCPI 64

Query: 2277 NNTRDMHRIVNR-----NTTALVQDISSSLDYCVDGAQNCSVAATEGIAIHSVQDIQPEM 2113
             + RD  R  +R      +     D    L+YC +  + C V+A   +AIHS+ DI    
Sbjct: 65   LDVRDGARYTDRFMSVAGSLEKQPDRELRLNYCSNRFEECDVSAPWAMAIHSISDIPITT 124

Query: 2112 LSKIMDNKGMRHLAGVLHYSPEMIERDQGFFPQLDMYYEKDVQKD----TISFHFHNDSS 1945
            + K    +G++ L   +   P M+    GF P+L++ +E + + D     ISFHF +   
Sbjct: 125  VVKHCFRRGVKKLIASIMMDPMMLIATTGFIPRLNVKWEIETESDGKSRRISFHFVDAPG 184

Query: 1944 FDYVQKYSLLLRY 1906
              Y   Y +L++Y
Sbjct: 185  LSYSHNYDVLMQY 197