BLASTX nr result
ID: Cinnamomum23_contig00051318
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00051318
(2101 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004063675.1| CI protein [Passion fruit woodiness virus] 88 3e-14
ref|YP_004063671.1| polyprotein [Passion fruit woodiness virus] ... 88 3e-14
ref|NP_787942.1| CI protein [Peru tomato mosaic virus] 85 2e-13
ref|NP_787937.1| polyprotein [Peru tomato mosaic virus] gi|28460... 85 2e-13
dbj|BAN10294.1| polyprotein [Passion fruit woodiness virus] 84 3e-13
ref|NP_741973.1| CI protein [Wild potato mosaic virus] 84 4e-13
ref|NP_741959.1| polyprotein [Wild potato mosaic virus] gi|25045... 84 4e-13
gb|AGT56190.1| polyprotein [Potato virus V] 82 1e-12
ref|NP_734373.1| CI protein [Potato virus V] 82 2e-12
ref|NP_659008.1| polyprotein [Potato virus V] gi|13235336|emb|CA... 82 2e-12
emb|CAI65401.1| polyprotein [Potato virus Y strain O] 81 4e-12
ref|YP_001974440.1| CI protein [Fritillary virus Y] 80 5e-12
ref|YP_001974419.1| polyprotein [Fritillary virus Y] gi|89267030... 80 5e-12
ref|YP_007354892.1| CI [Brugmansia mosaic virus] 80 6e-12
ref|YP_007354880.1| polyprotein [Brugmansia mosaic virus] gi|440... 80 6e-12
ref|NP_734087.1| CI protein [Sorghum mosaic virus] 80 8e-12
ref|NP_659391.1| polyprotein [Sorghum mosaic virus] gi|18621201|... 80 8e-12
emb|CAK32524.1| polyprotein [Potato virus Y strain N] 80 8e-12
emb|CAI65402.1| polyprotein [Potato virus Y strain Wilga] 79 1e-11
emb|CAC84433.1| polyprotein, partial [Sorghum mosaic virus] 79 1e-11
>ref|YP_004063675.1| CI protein [Passion fruit woodiness virus]
Length = 634
Score = 87.8 bits (216), Expect = 3e-14
Identities = 106/425 (24%), Positives = 176/425 (41%), Gaps = 17/425 (4%)
Frame = -1
Query: 1699 SCKFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVT 1523
S +FL+ G G GKST LP H+++ G VL+ L +A V +QL K +
Sbjct: 78 STEFLIRGAVGSGKSTGLPHHLSK----KGKVLL--LEPTRPLAENVSKQLGKDPFY--- 128
Query: 1522 VENLRSEHVRRPSKGLVVYYAA-ISDFLALLAAH---SDICQLLNLSYVYVDEAHERRPE 1355
HV +GL V+ ++ I+ + A H ++ QL ++ +DE H
Sbjct: 129 ------HHVTLRMRGLSVFGSSNITVMTSGFAFHYYVNNPGQLAEFDFIMIDECHVLDSS 182
Query: 1354 NKMLQILVAMGWFPKQRVFFGS---ATARAANVEENASRGRVVKSTKPEFLKL-----VA 1199
+A K+ F G +A E + VK E L
Sbjct: 183 T------IAFNCALKEFEFAGKLIKVSATPPGRECEFTTQHPVKLKVEEHLSFQNFVQAQ 236
Query: 1198 GEFQKVSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDC 1019
G + H N L++ AS +E DT Y V + + ++V
Sbjct: 237 GSKSNADMVQHGN---NLLVYVASYNEVDTLAKYLTEKQYKVTKVDGRTMQMGNVEIVTS 293
Query: 1018 LKSNGVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRM 839
+ ++A ++++ G TL ID V+D G V ++D D + Y RPVT ERIQR+
Sbjct: 294 GTAEKPHFVVATNIIENGVTLDIDCVIDFGLKVVAELDTDNRCVRYNKRPVTYGERIQRL 353
Query: 838 GRVGRCEKGTGYFADIDSYKMEYEVIPH---TECYVYLWCCMFNLSSQLDYVQKYASYFG 668
GRVGRC+ G+ I + E IP TE + +++Q +
Sbjct: 354 GRVGRCK--PGFALRIGHTEKGMEEIPEFIATEAAFLSFAYGLPVTTQ----NVTTNILS 407
Query: 667 EMSLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSC-LPMTKLQDSSRSIVSYAN 491
++++ L+ + P V +H++ Y+G++ I F+ L +++ S +I
Sbjct: 408 NCTVKQARNALNFEITPFVTTHFIKYDGSMHPEIHKLFKPYKLRESEMLLSKLAIPFQYT 467
Query: 490 NYWLT 476
N W+T
Sbjct: 468 NQWIT 472
>ref|YP_004063671.1| polyprotein [Passion fruit woodiness virus]
gi|312861919|gb|ADR10439.1| polyprotein [Passion fruit
woodiness virus]
Length = 3086
Score = 87.8 bits (216), Expect = 3e-14
Identities = 106/425 (24%), Positives = 176/425 (41%), Gaps = 17/425 (4%)
Frame = -1
Query: 1699 SCKFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVT 1523
S +FL+ G G GKST LP H+++ G VL+ L +A V +QL K +
Sbjct: 1250 STEFLIRGAVGSGKSTGLPHHLSK----KGKVLL--LEPTRPLAENVSKQLGKDPFY--- 1300
Query: 1522 VENLRSEHVRRPSKGLVVYYAA-ISDFLALLAAH---SDICQLLNLSYVYVDEAHERRPE 1355
HV +GL V+ ++ I+ + A H ++ QL ++ +DE H
Sbjct: 1301 ------HHVTLRMRGLSVFGSSNITVMTSGFAFHYYVNNPGQLAEFDFIMIDECHVLDSS 1354
Query: 1354 NKMLQILVAMGWFPKQRVFFGS---ATARAANVEENASRGRVVKSTKPEFLKL-----VA 1199
+A K+ F G +A E + VK E L
Sbjct: 1355 T------IAFNCALKEFEFAGKLIKVSATPPGRECEFTTQHPVKLKVEEHLSFQNFVQAQ 1408
Query: 1198 GEFQKVSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDC 1019
G + H N L++ AS +E DT Y V + + ++V
Sbjct: 1409 GSKSNADMVQHGN---NLLVYVASYNEVDTLAKYLTEKQYKVTKVDGRTMQMGNVEIVTS 1465
Query: 1018 LKSNGVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRM 839
+ ++A ++++ G TL ID V+D G V ++D D + Y RPVT ERIQR+
Sbjct: 1466 GTAEKPHFVVATNIIENGVTLDIDCVIDFGLKVVAELDTDNRCVRYNKRPVTYGERIQRL 1525
Query: 838 GRVGRCEKGTGYFADIDSYKMEYEVIPH---TECYVYLWCCMFNLSSQLDYVQKYASYFG 668
GRVGRC+ G+ I + E IP TE + +++Q +
Sbjct: 1526 GRVGRCK--PGFALRIGHTEKGMEEIPEFIATEAAFLSFAYGLPVTTQ----NVTTNILS 1579
Query: 667 EMSLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSC-LPMTKLQDSSRSIVSYAN 491
++++ L+ + P V +H++ Y+G++ I F+ L +++ S +I
Sbjct: 1580 NCTVKQARNALNFEITPFVTTHFIKYDGSMHPEIHKLFKPYKLRESEMLLSKLAIPFQYT 1639
Query: 490 NYWLT 476
N W+T
Sbjct: 1640 NQWIT 1644
>ref|NP_787942.1| CI protein [Peru tomato mosaic virus]
Length = 634
Score = 85.1 bits (209), Expect = 2e-13
Identities = 116/452 (25%), Positives = 189/452 (41%), Gaps = 19/452 (4%)
Frame = -1
Query: 1705 IGSCK-FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGF 1532
+ SC FL+ G G GKST LP H++ T +++ P LA V +QLS F
Sbjct: 75 MSSCTDFLIRGAVGSGKSTGLPSHLS--TMGKVLLIEPTRPLAENVY----KQLSGSPFF 128
Query: 1531 VVTVENLRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPEN 1352
+ +R V S + ++ AL +++ QL + ++ +DE H +
Sbjct: 129 MKPTMRMRGNSVFGSSP-----ISVMTSGFALHYYANNVTQLQEIKFIIIDECHVMDASS 183
Query: 1351 KMLQILV-----------AMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKL 1205
+ LV P + V F + VEE+ S + V + +
Sbjct: 184 MAFRSLVHAYHNSCKVLKVSATPPGREVEFATQFPVKLLVEESLSFKQFVDAQRS----- 238
Query: 1204 VAGEFQKVSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVV 1025
G V H +NI L++ AS +E D + D V + ++V
Sbjct: 239 -GGNADVVQ--HGSNI----LVYVASYNEVDALSKSLIERDFSVTKVDGRTMKHGDLEIV 291
Query: 1024 DCLKSNGVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQ 845
++A ++++ G TL ID VVD G V +D D ++Y + ++ ERIQ
Sbjct: 292 THGTKAKPHFVVATNIIENGVTLDIDVVVDFGLKVVPFLDTDNRSVAYTKQSISYGERIQ 351
Query: 844 RMGRVGRCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFG 668
R+GRVGR +KGT + +E + TE +Y C +NL V +
Sbjct: 352 RLGRVGRIQKGTALRIGFTEKGLVEIPQMVATEAALY--CFAYNLPVMSSSVS--TALLS 407
Query: 667 EMSLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVS 500
+L++V V+ + L P +++ +EG + I D L KL+DS S S V
Sbjct: 408 RCTLRQVRVMHNFELSPFFSCNFVSHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVP 463
Query: 499 Y-ANNYWLTQHTGSTDYTTESEKILVPVKVPM 407
Y A++ WL + DYT + +P V +
Sbjct: 464 YRASSEWLQ----AIDYTRMGAHLDLPDTVKL 491
>ref|NP_787937.1| polyprotein [Peru tomato mosaic virus] gi|28460476|emb|CAD24793.1|
polyprotein [Peru tomato mosaic virus]
Length = 3065
Score = 85.1 bits (209), Expect = 2e-13
Identities = 116/452 (25%), Positives = 189/452 (41%), Gaps = 19/452 (4%)
Frame = -1
Query: 1705 IGSCK-FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGF 1532
+ SC FL+ G G GKST LP H++ T +++ P LA V +QLS F
Sbjct: 1229 MSSCTDFLIRGAVGSGKSTGLPSHLS--TMGKVLLIEPTRPLAENVY----KQLSGSPFF 1282
Query: 1531 VVTVENLRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPEN 1352
+ +R V S + ++ AL +++ QL + ++ +DE H +
Sbjct: 1283 MKPTMRMRGNSVFGSSP-----ISVMTSGFALHYYANNVTQLQEIKFIIIDECHVMDASS 1337
Query: 1351 KMLQILV-----------AMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKL 1205
+ LV P + V F + VEE+ S + V + +
Sbjct: 1338 MAFRSLVHAYHNSCKVLKVSATPPGREVEFATQFPVKLLVEESLSFKQFVDAQRS----- 1392
Query: 1204 VAGEFQKVSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVV 1025
G V H +NI L++ AS +E D + D V + ++V
Sbjct: 1393 -GGNADVVQ--HGSNI----LVYVASYNEVDALSKSLIERDFSVTKVDGRTMKHGDLEIV 1445
Query: 1024 DCLKSNGVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQ 845
++A ++++ G TL ID VVD G V +D D ++Y + ++ ERIQ
Sbjct: 1446 THGTKAKPHFVVATNIIENGVTLDIDVVVDFGLKVVPFLDTDNRSVAYTKQSISYGERIQ 1505
Query: 844 RMGRVGRCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFG 668
R+GRVGR +KGT + +E + TE +Y C +NL V +
Sbjct: 1506 RLGRVGRIQKGTALRIGFTEKGLVEIPQMVATEAALY--CFAYNLPVMSSSVS--TALLS 1561
Query: 667 EMSLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVS 500
+L++V V+ + L P +++ +EG + I D L KL+DS S S V
Sbjct: 1562 RCTLRQVRVMHNFELSPFFSCNFVSHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVP 1617
Query: 499 Y-ANNYWLTQHTGSTDYTTESEKILVPVKVPM 407
Y A++ WL + DYT + +P V +
Sbjct: 1618 YRASSEWLQ----AIDYTRMGAHLDLPDTVKL 1645
>dbj|BAN10294.1| polyprotein [Passion fruit woodiness virus]
Length = 3086
Score = 84.3 bits (207), Expect = 3e-13
Identities = 107/429 (24%), Positives = 174/429 (40%), Gaps = 21/429 (4%)
Frame = -1
Query: 1699 SCKFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVT 1523
S +FL+ G G GKST LP H+++ G VL+ L +A V +QL K +
Sbjct: 1250 STEFLIRGAVGSGKSTGLPHHLSK----EGKVLL--LEPTRPLAENVSKQLGKDPFY--- 1300
Query: 1522 VENLRSEHVRRPSKGLVVYYAA-ISDFLALLAAH---SDICQLLNLSYVYVDEAHERRPE 1355
HV +GL V+ ++ I+ + A H ++ QL ++ +DE H
Sbjct: 1301 ------HHVTLRMRGLSVFGSSNITVMTSGFAFHYYVNNPGQLAEFDFIMIDECHVLDSS 1354
Query: 1354 NKMLQILVAMGWFPKQRVFFGS---ATARAANVEENASRGRVVKSTKPEFLKL-----VA 1199
+A K+ F G +A E + VK E L
Sbjct: 1355 T------IAFNCALKEFEFAGKLIKVSATPPGRECEFTTQHPVKLKVEEHLSFQNFVQAQ 1408
Query: 1198 GEFQKVSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDC 1019
G + H N L++ AS +E DT Y V + + ++V
Sbjct: 1409 GSKSNADMVQHGN---NLLVYVASYNEVDTLAKYLTEKQYKVTKVDGRTMQMGNVEIVTS 1465
Query: 1018 LKSNGVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRM 839
+ ++A ++++ G TL ID V+D G V ++D D + Y RPVT ERIQR+
Sbjct: 1466 GTAEKPHFVVATNIIENGVTLDIDCVIDFGLKVVAELDTDNRCVRYSKRPVTYGERIQRL 1525
Query: 838 GRVGRCEKGTGYFADIDSYKMEYEVIPH---TECYVYLWCCMFNLSSQLDYVQKYASYFG 668
GRVGRC+ G+ I + E IP TE + +++Q +
Sbjct: 1526 GRVGRCK--PGFALRIGHTEKGMEEIPEFIATEAAFLSFAYGLPVTTQ----NVTTNIPS 1579
Query: 667 EMSLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDSSRSIVSYA-- 494
++++ L+ + P V +H++ Y+G S+ L KL++S + A
Sbjct: 1580 NCTVKQARNALNFEITPFVTTHFIKYDG----SMHPEIHKLLKPYKLRESEMLLSKLAIP 1635
Query: 493 ---NNYWLT 476
N W+T
Sbjct: 1636 FQYTNQWIT 1644
>ref|NP_741973.1| CI protein [Wild potato mosaic virus]
Length = 634
Score = 84.0 bits (206), Expect = 4e-13
Identities = 126/466 (27%), Positives = 199/466 (42%), Gaps = 24/466 (5%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP +++ G VL+ + +A V +QLS F+
Sbjct: 81 FLVRGAVGSGKSTGLPNYLSSM----GKVLLIEP--TRPLAENVYKQLSGAPFFLKPTMR 134
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R V S V+ S F AH+ I L + +V +DE H + + L
Sbjct: 135 MRGNSVFGSSPISVM----TSGFALHYFAHN-ITHLQEVRFVIIDECHVMDASSMAFRSL 189
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKLVAGEFQKVSPLHHTNIV 1154
V + K +V SAT GR V+ T +KLV E
Sbjct: 190 V-QAYHQKCKVLKVSATPP----------GREVEFTTQFPVKLVVEESLSCKQFVDAQRT 238
Query: 1153 G----------RTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISS-SLKYKDVVDCLKSN 1007
G L++ AS +E D + D V T + ++K+ D+ + ++
Sbjct: 239 GGNADVVQHGVNILVYVASYNEVDMLSKALIEKDFSV---TKVDGRTMKHGDLE--ITTH 293
Query: 1006 GVC----VLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRM 839
G ++A ++++ G TL ID VVD G V +D+D ++Y ++ ERIQR+
Sbjct: 294 GTQSKPHFVVATNIIENGVTLDIDVVVDFGLKVVPFLDMDNRSIAYTKTSISYGERIQRL 353
Query: 838 GRVGRCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEM 662
GRVGR +KGT + +E + TE +Y C +NL V + +
Sbjct: 354 GRVGRIQKGTALRIGSTEKGLVEIPQMISTEAALY--CFAYNLPVMSSCVP--TALLSKC 409
Query: 661 SLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSY- 497
+L++V V+ + L P +++ +EG + I D L KL+DS S S V Y
Sbjct: 410 TLRQVQVMHNFELTPFFTCNFVTHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVPYR 465
Query: 496 ANNYWLTQHTGSTDYTTESEKILVP--VKVPMDWLPILYYAHKRLF 365
A++ WL + DYT + +P VK+ I H++L+
Sbjct: 466 ASSEWLR----AIDYTRMGIHLDLPDTVKLAFHTKDIPAALHEKLW 507
>ref|NP_741959.1| polyprotein [Wild potato mosaic virus] gi|25045794|emb|CAD24792.1|
polyprotein [Wild potato mosaic virus]
Length = 3065
Score = 84.0 bits (206), Expect = 4e-13
Identities = 126/466 (27%), Positives = 199/466 (42%), Gaps = 24/466 (5%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP +++ G VL+ + +A V +QLS F+
Sbjct: 1235 FLVRGAVGSGKSTGLPNYLSSM----GKVLLIEP--TRPLAENVYKQLSGAPFFLKPTMR 1288
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R V S V+ S F AH+ I L + +V +DE H + + L
Sbjct: 1289 MRGNSVFGSSPISVM----TSGFALHYFAHN-ITHLQEVRFVIIDECHVMDASSMAFRSL 1343
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKLVAGEFQKVSPLHHTNIV 1154
V + K +V SAT GR V+ T +KLV E
Sbjct: 1344 V-QAYHQKCKVLKVSATPP----------GREVEFTTQFPVKLVVEESLSCKQFVDAQRT 1392
Query: 1153 G----------RTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISS-SLKYKDVVDCLKSN 1007
G L++ AS +E D + D V T + ++K+ D+ + ++
Sbjct: 1393 GGNADVVQHGVNILVYVASYNEVDMLSKALIEKDFSV---TKVDGRTMKHGDLE--ITTH 1447
Query: 1006 GVC----VLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRM 839
G ++A ++++ G TL ID VVD G V +D+D ++Y ++ ERIQR+
Sbjct: 1448 GTQSKPHFVVATNIIENGVTLDIDVVVDFGLKVVPFLDMDNRSIAYTKTSISYGERIQRL 1507
Query: 838 GRVGRCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEM 662
GRVGR +KGT + +E + TE +Y C +NL V + +
Sbjct: 1508 GRVGRIQKGTALRIGSTEKGLVEIPQMISTEAALY--CFAYNLPVMSSCVP--TALLSKC 1563
Query: 661 SLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSY- 497
+L++V V+ + L P +++ +EG + I D L KL+DS S S V Y
Sbjct: 1564 TLRQVQVMHNFELTPFFTCNFVTHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVPYR 1619
Query: 496 ANNYWLTQHTGSTDYTTESEKILVP--VKVPMDWLPILYYAHKRLF 365
A++ WL + DYT + +P VK+ I H++L+
Sbjct: 1620 ASSEWLR----AIDYTRMGIHLDLPDTVKLAFHTKDIPAALHEKLW 1661
>gb|AGT56190.1| polyprotein [Potato virus V]
Length = 3066
Score = 82.4 bits (202), Expect = 1e-12
Identities = 115/432 (26%), Positives = 189/432 (43%), Gaps = 18/432 (4%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP H++ G VL+ + +A V +QLS F+
Sbjct: 1236 FLVRGAVGSGKSTGLPSHLSAM----GKVLLIEP--TRPLAENVYKQLSGAPFFMKPTMR 1289
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R V S + ++ AL ++I QL + +V +DE H + + L
Sbjct: 1290 MRGNSVFGSSP-----ISVMTSGFALHYFANNITQLQEIKFVIIDECHVMDASSMAFRSL 1344
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRG-RVVKSTKPEFLKLV-----AGEFQKVSPL 1172
+ + K +V SAT VE +++ F + V G +
Sbjct: 1345 IH-AYHTKCKVLKVSATPPGREVEFTTQFPVKLLVEESLSFKQFVDAQRTGGNADVIQ-- 1401
Query: 1171 HHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISS-SLKYKDVVDCLKSNGVC- 998
H +NI L++ AS +E D + D V T + ++K+ D+ + ++G
Sbjct: 1402 HGSNI----LVYVASYNEVDMLSKALIDKDFAV---TKVDGRTMKHGDLE--ITTHGTKG 1452
Query: 997 ---VLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVG 827
++A ++++ G TL ID VVD G +D D ++Y ++ ERIQR+GRVG
Sbjct: 1453 KPHFVVATNIIENGVTLDIDVVVDFGLKVTPFLDTDNRSVAYTKTSISYGERIQRLGRVG 1512
Query: 826 RCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQK 650
R +KGT + ++ + TE +Y C +NL V + + +L++
Sbjct: 1513 RIQKGTALRIGSTEKGLVDIPQMISTEAALY--CFAYNLPVMSSCVS--TALLSKCTLRQ 1568
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSY-ANNY 485
V V+ + L P +++ +EG + I D L KL+DS S S V Y A++
Sbjct: 1569 VRVMHNFELSPFFSCNFVTHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVPYRASSE 1624
Query: 484 WLTQHTGSTDYT 449
WL + DYT
Sbjct: 1625 WLQ----AIDYT 1632
>ref|NP_734373.1| CI protein [Potato virus V]
Length = 634
Score = 81.6 bits (200), Expect = 2e-12
Identities = 116/432 (26%), Positives = 189/432 (43%), Gaps = 18/432 (4%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP H++ G VL+ + +A V +QLS F+
Sbjct: 81 FLVRGAVGSGKSTGLPSHLSAM----GKVLLIEP--TRPLAENVYKQLSGAPFFMKPTMR 134
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R V S + ++ AL ++I QL + +V +DE H + + L
Sbjct: 135 MRGNSVFGSSP-----ISVMTSGFALHYFANNITQLQEIKFVIIDECHVMDASSMAFRSL 189
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRG-RVVKSTKPEFLKLV-----AGEFQKVSPL 1172
+ + K +V SAT VE +++ F + V G +
Sbjct: 190 IH-AYHTKCKVLKVSATPPGREVEFTTQFPVKLLVEESLSFKQFVDAQRTGGNADVIQ-- 246
Query: 1171 HHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISS-SLKYKDVVDCLKSNGVC- 998
H +NI L++ AS +E D + D V T + ++K+ D+ + ++G
Sbjct: 247 HGSNI----LVYVASYNEVDMLSKALIGKDFAV---TKVDGRTMKHGDLE--ITTHGTKG 297
Query: 997 ---VLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVG 827
++A ++++ G TL ID VVD G +D D ++Y V+ ERIQR+GRVG
Sbjct: 298 KPHFVVATNIIENGVTLDIDVVVDFGLKVTPFLDTDNRSVAYTKTSVSYGERIQRLGRVG 357
Query: 826 RCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQK 650
R +KGT + ++ + TE +Y C +NL V + + +L++
Sbjct: 358 RIQKGTALRIGFTEKGLVDIPQMISTEAALY--CFAYNLPVMSSCVS--TALLSKCTLRQ 413
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSY-ANNY 485
V V+ + L P +++ +EG + I D L KL+DS S S V Y A++
Sbjct: 414 VRVMHNFELSPFFSCNFVTHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVPYRASSE 469
Query: 484 WLTQHTGSTDYT 449
WL + DYT
Sbjct: 470 WLQ----AIDYT 477
>ref|NP_659008.1| polyprotein [Potato virus V] gi|13235336|emb|CAB75857.2| polyprotein
[Potato virus V]
Length = 3066
Score = 81.6 bits (200), Expect = 2e-12
Identities = 116/432 (26%), Positives = 189/432 (43%), Gaps = 18/432 (4%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP H++ G VL+ + +A V +QLS F+
Sbjct: 1236 FLVRGAVGSGKSTGLPSHLSAM----GKVLLIEP--TRPLAENVYKQLSGAPFFMKPTMR 1289
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R V S + ++ AL ++I QL + +V +DE H + + L
Sbjct: 1290 MRGNSVFGSSP-----ISVMTSGFALHYFANNITQLQEIKFVIIDECHVMDASSMAFRSL 1344
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRG-RVVKSTKPEFLKLV-----AGEFQKVSPL 1172
+ + K +V SAT VE +++ F + V G +
Sbjct: 1345 IH-AYHTKCKVLKVSATPPGREVEFTTQFPVKLLVEESLSFKQFVDAQRTGGNADVIQ-- 1401
Query: 1171 HHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISS-SLKYKDVVDCLKSNGVC- 998
H +NI L++ AS +E D + D V T + ++K+ D+ + ++G
Sbjct: 1402 HGSNI----LVYVASYNEVDMLSKALIGKDFAV---TKVDGRTMKHGDLE--ITTHGTKG 1452
Query: 997 ---VLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVG 827
++A ++++ G TL ID VVD G +D D ++Y V+ ERIQR+GRVG
Sbjct: 1453 KPHFVVATNIIENGVTLDIDVVVDFGLKVTPFLDTDNRSVAYTKTSVSYGERIQRLGRVG 1512
Query: 826 RCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQK 650
R +KGT + ++ + TE +Y C +NL V + + +L++
Sbjct: 1513 RIQKGTALRIGFTEKGLVDIPQMISTEAALY--CFAYNLPVMSSCVS--TALLSKCTLRQ 1568
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSY-ANNY 485
V V+ + L P +++ +EG + I D L KL+DS S S V Y A++
Sbjct: 1569 VRVMHNFELSPFFSCNFVTHEGTMHPVIHD----LLKKYKLRDSIIPLSESAVPYRASSE 1624
Query: 484 WLTQHTGSTDYT 449
WL + DYT
Sbjct: 1625 WLQ----AIDYT 1632
>emb|CAI65401.1| polyprotein [Potato virus Y strain O]
Length = 3061
Score = 80.9 bits (198), Expect = 4e-12
Identities = 107/435 (24%), Positives = 184/435 (42%), Gaps = 8/435 (1%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP H++ + +++ P LA V +QLS F
Sbjct: 1238 FLVRGAVGSGKSTGLPVHLS--VAGSVLLIEPTRPLAENVI----KQLSSEPFFKKPTPR 1291
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R + S + ++ AL ++ QL ++V DE H P + L
Sbjct: 1292 MRGNSIFGSSP-----ISVMTSGFALHYFANNRSQLAQFNFVIFDECHVLDPSAMAFRSL 1346
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRG-RVVKSTKPEFLKLVAGEFQKVSPLHHTNI 1157
+++ + +V SAT VE + +++ F V + K +
Sbjct: 1347 LSV-YHQACKVLKVSATPVGREVEFTTQQPVKLIVEDTLSFQSFVDAQGSKTNA-DVVQF 1404
Query: 1156 VGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNGVCVLLADSV 977
L++ +S +E DT ++ V + ++V S ++A ++
Sbjct: 1405 GSNVLVYVSSYNEVDTLAKLLTDKNMMVTKVDGRTMKHGCLEIVTKGTSARPHFVVATNI 1464
Query: 976 LQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVGRCEKGTGY-F 800
++ G TL ID VVD G +D+D ++Y V+ ERIQR+GRVGR +KG
Sbjct: 1465 IENGVTLDIDVVVDFGLKVSPFLDIDNRSIAYNKVSVSYGERIQRLGRVGRFKKGVALRI 1524
Query: 799 ADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQKVAVLLHSTLH 620
+ +E + TE L C +NL V S G ++++V + L
Sbjct: 1525 GHTEKGIIEIPSMVATE--AALACFAYNLPVMTGGVS--TSLIGSCTVRQVKTMQPFELS 1580
Query: 619 PVVLSHYLDYEGNVVSSISD-----AFRSCLPMTKLQDSSRSIVSYANNYWLTQHTGSTD 455
P + +++ ++G++ I D R C MT L D +SI A++ WL+
Sbjct: 1581 PFFIQNFVAHDGSMHPVIHDILKKYKLRDC--MTPLCD--QSIPYRASSTWLS------- 1629
Query: 454 YTTESEKILVPVKVP 410
+E E++ VP+++P
Sbjct: 1630 -VSEYERLGVPLEIP 1643
>ref|YP_001974440.1| CI protein [Fritillary virus Y]
Length = 634
Score = 80.5 bits (197), Expect = 5e-12
Identities = 100/419 (23%), Positives = 173/419 (41%), Gaps = 11/419 (2%)
Frame = -1
Query: 1699 SCKFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVT 1523
S +FLV G G GKST LP H+++ G VL+ L +A V +QLS
Sbjct: 78 STEFLVRGAAGSGKSTGLPHHLSK----KGKVLL--LEPTRPLAENVSKQLSGDPFL--- 128
Query: 1522 VENLRSEHVRRPSKGLVVYYAA-ISDFLALLAAH---SDICQLLNLSYVYVDEAHERRPE 1355
++V +GL Y ++ I+ + A H ++ QL N Y+ +DE H
Sbjct: 129 ------QNVTLRMRGLSKYGSSNITVMTSGYAFHYYVNNPTQLCNFDYIIIDECHVLDSP 182
Query: 1354 NKMLQILVAMGWFPKQRVFFGSATARAANVE---ENASRGRVVKSTKPEFLKLVAGEFQK 1184
+ FP ++ SAT E ++ + +V + + G
Sbjct: 183 TIAFNCALKEYEFPG-KLLKVSATPPGRECEFKTQHPVKLKVEEHLSFQHFVQAQGTGSN 241
Query: 1183 VSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNG 1004
H N L++ AS +E D V + + +++
Sbjct: 242 ADMTQHGN---NLLVYVASYNEVDQLSKMLTERHFKVTKVDGRTMQMGNVEIITTGSEGK 298
Query: 1003 VCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVGR 824
++A ++++ G TL ID V+D G V ++D D + Y +PVT ERIQR+GRVGR
Sbjct: 299 PHFVVATNIIENGVTLDIDCVIDFGLKVVAELDSDNRCVRYAKKPVTYGERIQRLGRVGR 358
Query: 823 CEKGTGYFADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYAS--YFGEMSLQK 650
C+ G+ + + E IP ++ + S L + S + ++++
Sbjct: 359 CK--PGFALRVGHTEKGIEEIPE---FIATEAAFLSFSYGLPVTTQGVSTNILSKCTVKQ 413
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSC-LPMTKLQDSSRSIVSYANNYWLT 476
V L+ + P +H++ Y+G++ I + L +++ S +I N WLT
Sbjct: 414 AKVALNFEITPFFTTHFIKYDGSMHPEIHRLMKPYKLRESEMLLSKLAIPYQFTNQWLT 472
>ref|YP_001974419.1| polyprotein [Fritillary virus Y] gi|89267030|emb|CAJ01678.1|
polyprotein [Fritillary virus Y]
Length = 3078
Score = 80.5 bits (197), Expect = 5e-12
Identities = 100/419 (23%), Positives = 173/419 (41%), Gaps = 11/419 (2%)
Frame = -1
Query: 1699 SCKFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVT 1523
S +FLV G G GKST LP H+++ G VL+ L +A V +QLS
Sbjct: 1245 STEFLVRGAAGSGKSTGLPHHLSK----KGKVLL--LEPTRPLAENVSKQLSGDPFL--- 1295
Query: 1522 VENLRSEHVRRPSKGLVVYYAA-ISDFLALLAAH---SDICQLLNLSYVYVDEAHERRPE 1355
++V +GL Y ++ I+ + A H ++ QL N Y+ +DE H
Sbjct: 1296 ------QNVTLRMRGLSKYGSSNITVMTSGYAFHYYVNNPTQLCNFDYIIIDECHVLDSP 1349
Query: 1354 NKMLQILVAMGWFPKQRVFFGSATARAANVE---ENASRGRVVKSTKPEFLKLVAGEFQK 1184
+ FP ++ SAT E ++ + +V + + G
Sbjct: 1350 TIAFNCALKEYEFPG-KLLKVSATPPGRECEFKTQHPVKLKVEEHLSFQHFVQAQGTGSN 1408
Query: 1183 VSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNG 1004
H N L++ AS +E D V + + +++
Sbjct: 1409 ADMTQHGN---NLLVYVASYNEVDQLSKMLTERHFKVTKVDGRTMQMGNVEIITTGSEGK 1465
Query: 1003 VCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVGR 824
++A ++++ G TL ID V+D G V ++D D + Y +PVT ERIQR+GRVGR
Sbjct: 1466 PHFVVATNIIENGVTLDIDCVIDFGLKVVAELDSDNRCVRYAKKPVTYGERIQRLGRVGR 1525
Query: 823 CEKGTGYFADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYAS--YFGEMSLQK 650
C+ G+ + + E IP ++ + S L + S + ++++
Sbjct: 1526 CK--PGFALRVGHTEKGIEEIPE---FIATEAAFLSFSYGLPVTTQGVSTNILSKCTVKQ 1580
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSC-LPMTKLQDSSRSIVSYANNYWLT 476
V L+ + P +H++ Y+G++ I + L +++ S +I N WLT
Sbjct: 1581 AKVALNFEITPFFTTHFIKYDGSMHPEIHRLMKPYKLRESEMLLSKLAIPYQFTNQWLT 1639
>ref|YP_007354892.1| CI [Brugmansia mosaic virus]
Length = 634
Score = 80.1 bits (196), Expect = 6e-12
Identities = 104/419 (24%), Positives = 177/419 (42%), Gaps = 9/419 (2%)
Frame = -1
Query: 1705 IGSCK-FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGF 1532
IGS K +L+ G G GKST LP++++ N +++ P LA V + QL+ F
Sbjct: 75 IGSEKDYLIRGAVGSGKSTGLPYNLSSFG--NVLLIEPTRPLAENVYN----QLTGAPFF 128
Query: 1531 VVTVENLRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPEN 1352
+ +R V S V+ F A ++I L + ++ +DE H
Sbjct: 129 LKPTMRMRGNSVFGSSPISVMTSGFALHFFA-----NNITHLQEIDFIIIDECHVMDASA 183
Query: 1351 KMLQILVAMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKLVA-GEFQKVSP 1175
+ L+ + + +V SAT E S VK E L + E Q+
Sbjct: 184 MAFRSLIH-AFHARCKVLKVSATPPGREAE--FSTQHPVKLIVEESLSFKSFAEAQRSGS 240
Query: 1174 ----LHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSN 1007
+ H N + L++ AS +E D V + ++V S
Sbjct: 241 NCDVIQHGNNI---LVYVASYNEVDQLSKLLTDKGFAVTKVDGRTMKHGSSEIVTTGTSL 297
Query: 1006 GVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVG 827
++A ++++ G TL ID VVD G +D+D +SY ++ ERIQR+GRVG
Sbjct: 298 KPHFIVATNIIENGVTLDIDVVVDFGMKVSPFLDVDNRSISYNKISISYGERIQRLGRVG 357
Query: 826 RCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQK 650
R ++GT + +E I TE +Y C +NL V S + ++++
Sbjct: 358 RFQQGTAVRIGHTEKGLVEIPQIISTEAALY--CFAYNLPVMSSGVS--VSLLSKCTIKQ 413
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDSSRSIVSY-ANNYWLT 476
V V+ + L P + +++ +EG + I + + + S S + Y A++ W+T
Sbjct: 414 VRVMHNFELSPFFMYNFVSFEGTMHPVIHEVLKKYKLRDSMISLSESAIPYRASSEWMT 472
>ref|YP_007354880.1| polyprotein [Brugmansia mosaic virus] gi|440463101|gb|AGC08387.1|
polyprotein [Brugmansia mosaic virus]
Length = 3085
Score = 80.1 bits (196), Expect = 6e-12
Identities = 104/419 (24%), Positives = 177/419 (42%), Gaps = 9/419 (2%)
Frame = -1
Query: 1705 IGSCK-FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGF 1532
IGS K +L+ G G GKST LP++++ N +++ P LA V + QL+ F
Sbjct: 1245 IGSEKDYLIRGAVGSGKSTGLPYNLSSFG--NVLLIEPTRPLAENVYN----QLTGAPFF 1298
Query: 1531 VVTVENLRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPEN 1352
+ +R V S V+ F A ++I L + ++ +DE H
Sbjct: 1299 LKPTMRMRGNSVFGSSPISVMTSGFALHFFA-----NNITHLQEIDFIIIDECHVMDASA 1353
Query: 1351 KMLQILVAMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKLVA-GEFQKVSP 1175
+ L+ + + +V SAT E S VK E L + E Q+
Sbjct: 1354 MAFRSLIH-AFHARCKVLKVSATPPGREAE--FSTQHPVKLIVEESLSFKSFAEAQRSGS 1410
Query: 1174 ----LHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSN 1007
+ H N + L++ AS +E D V + ++V S
Sbjct: 1411 NCDVIQHGNNI---LVYVASYNEVDQLSKLLTDKGFAVTKVDGRTMKHGSSEIVTTGTSL 1467
Query: 1006 GVCVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVG 827
++A ++++ G TL ID VVD G +D+D +SY ++ ERIQR+GRVG
Sbjct: 1468 KPHFIVATNIIENGVTLDIDVVVDFGMKVSPFLDVDNRSISYNKISISYGERIQRLGRVG 1527
Query: 826 RCEKGTGY-FADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQK 650
R ++GT + +E I TE +Y C +NL V S + ++++
Sbjct: 1528 RFQQGTAVRIGHTEKGLVEIPQIISTEAALY--CFAYNLPVMSSGVS--VSLLSKCTIKQ 1583
Query: 649 VAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDSSRSIVSY-ANNYWLT 476
V V+ + L P + +++ +EG + I + + + S S + Y A++ W+T
Sbjct: 1584 VRVMHNFELSPFFMYNFVSFEGTMHPVIHEVLKKYKLRDSMISLSESAIPYRASSEWMT 1642
>ref|NP_734087.1| CI protein [Sorghum mosaic virus]
Length = 638
Score = 79.7 bits (195), Expect = 8e-12
Identities = 108/425 (25%), Positives = 177/425 (41%), Gaps = 19/425 (4%)
Frame = -1
Query: 1693 KFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVE 1517
+FL+ G G GKST LP+H++Q G VL+ L +A V QL P V
Sbjct: 83 EFLLRGAVGSGKSTGLPYHLSQ----RGKVLL--LEPTRPLAENVCRQLQGPPFNVSPTL 136
Query: 1516 NLRSEHVRRPSKGLVVYYAAISDF-LALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQ 1340
+R S G S F L + A + D ++ N Y+ DE H M
Sbjct: 137 QMRG----LSSFGSTPITIMTSGFALHMYANNPD--KISNYDYIIFDECHI------MEA 184
Query: 1339 ILVAMGWFPKQRVFFG-----SATARAANVEENASRG---RVVKSTKPEFLKLVAGEFQK 1184
+A W K+ F G SAT E + V ++ L G K
Sbjct: 185 PAMAFYWLLKEYNFDGKIIKVSATPPGRECEFSTQYPVDIHVCENLTQNQFVLELGTGSK 244
Query: 1183 VSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNG 1004
+ N + L++ AS S+ D+ H VI + K + +NG
Sbjct: 245 ADATKYGNNI---LVYVASYSDVDSLARALTEHHYSVIKVDGRTM----KQNTTGIHTNG 297
Query: 1003 V----CVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMG 836
C ++A ++++ G TL +D VVD G ++D+D + Y+ ++ ERIQR+G
Sbjct: 298 TDARKCFVVATNIIENGVTLDVDVVVDFGLKVSAELDVDNRAIMYRKVSISYGERIQRLG 357
Query: 835 RVGRCEKGTGYFADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSL 656
RVGR + GT + + + K E+ C + L V ++ + ++
Sbjct: 358 RVGRTKPGTIIRSGV-TMKGLQEIPAMIATEAAFLCFAYGLKVITHNVS--TTHLAKCTV 414
Query: 655 QKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSYAN- 491
++ ++H L P ++S + ++G++ I + L KL+DS + V Y+N
Sbjct: 415 KQARTMMHFELSPFIMSELVKFDGSMHPQIHEK----LKKYKLRDSVIMLRTNAVPYSNV 470
Query: 490 NYWLT 476
+ WLT
Sbjct: 471 HNWLT 475
>ref|NP_659391.1| polyprotein [Sorghum mosaic virus] gi|18621201|emb|CAC84437.1|
polyprotein [Sorghum mosaic virus]
Length = 3071
Score = 79.7 bits (195), Expect = 8e-12
Identities = 108/425 (25%), Positives = 177/425 (41%), Gaps = 19/425 (4%)
Frame = -1
Query: 1693 KFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVE 1517
+FL+ G G GKST LP+H++Q G VL+ L +A V QL P V
Sbjct: 1190 EFLLRGAVGSGKSTGLPYHLSQ----RGKVLL--LEPTRPLAENVCRQLQGPPFNVSPTL 1243
Query: 1516 NLRSEHVRRPSKGLVVYYAAISDF-LALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQ 1340
+R S G S F L + A + D ++ N Y+ DE H M
Sbjct: 1244 QMRG----LSSFGSTPITIMTSGFALHMYANNPD--KISNYDYIIFDECHI------MEA 1291
Query: 1339 ILVAMGWFPKQRVFFG-----SATARAANVEENASRG---RVVKSTKPEFLKLVAGEFQK 1184
+A W K+ F G SAT E + V ++ L G K
Sbjct: 1292 PAMAFYWLLKEYNFDGKIIKVSATPPGRECEFSTQYPVDIHVCENLTQNQFVLELGTGSK 1351
Query: 1183 VSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNG 1004
+ N + L++ AS S+ D+ H VI + K + +NG
Sbjct: 1352 ADATKYGNNI---LVYVASYSDVDSLARALTEHHYSVIKVDGRTM----KQNTTGIHTNG 1404
Query: 1003 V----CVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMG 836
C ++A ++++ G TL +D VVD G ++D+D + Y+ ++ ERIQR+G
Sbjct: 1405 TDARKCFVVATNIIENGVTLDVDVVVDFGLKVSAELDVDNRAIMYRKVSISYGERIQRLG 1464
Query: 835 RVGRCEKGTGYFADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSL 656
RVGR + GT + + + K E+ C + L V ++ + ++
Sbjct: 1465 RVGRTKPGTIIRSGV-TMKGLQEIPAMIATEAAFLCFAYGLKVITHNVS--TTHLAKCTV 1521
Query: 655 QKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSIVSYAN- 491
++ ++H L P ++S + ++G++ I + L KL+DS + V Y+N
Sbjct: 1522 KQARTMMHFELSPFIMSELVKFDGSMHPQIHEK----LKKYKLRDSVIMLRTNAVPYSNV 1577
Query: 490 NYWLT 476
+ WLT
Sbjct: 1578 HNWLT 1582
>emb|CAK32524.1| polyprotein [Potato virus Y strain N]
Length = 3061
Score = 79.7 bits (195), Expect = 8e-12
Identities = 111/437 (25%), Positives = 185/437 (42%), Gaps = 10/437 (2%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP H++ G VL+ + +A V +QLS F
Sbjct: 1238 FLVRGAVGSGKSTGLPVHLSAA----GSVLLIEP--TRPLAENVFKQLSSEPFFKKPTLR 1291
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R V S + ++ AL ++ QL +++ DE H P + L
Sbjct: 1292 MRGNSVFGSSP-----ISIMTSGFALHYYANNRSQLTQFNFIIFDECHVLDPSAMAFRSL 1346
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRG-RVVKSTKPEFLKLVAGEFQKVSP---LHH 1166
+++ + +V SAT VE + ++V F V + K + H
Sbjct: 1347 LSV-YHQTCKVLKVSATPVGREVEFTTQQPVKLVVEDTLSFQSFVDAQGSKTNADVVQHG 1405
Query: 1165 TNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNGVCVLLA 986
+NI L++ +S +E DT ++ V + ++V S ++A
Sbjct: 1406 SNI----LVYVSSYNEVDTLAKLLTDRNMVVSKVDGRTMKHGCLEIVTKGTSAKPHFVVA 1461
Query: 985 DSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVGRCEKGTG 806
++++ G TL ID VVD G +D+D ++Y V+ ERIQR+GRVGR +KG
Sbjct: 1462 TNIIENGVTLDIDVVVDFGLKVSPFLDIDNRSIAYNKISVSYGERIQRLGRVGRFKKGVA 1521
Query: 805 YFADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQKVAVLLHST 626
+ K E+ L C +NLS V S G ++++V +
Sbjct: 1522 LRIG-HTEKGIIEIPSMIASEAALACFAYNLSVMTGGVS--TSLIGNCTVRQVKTMQQFE 1578
Query: 625 LHPVVLSHYLDYEGNVVSSISD-----AFRSCLPMTKLQDSSRSIVSYANNYWLTQHTGS 461
L P + +++ ++G++ I D R C MT L D +SI A++ WL+
Sbjct: 1579 LSPFFIQNFVAHDGSMHPVIHDILKKYKLRDC--MTPLCD--QSIPYRASSTWLS----- 1629
Query: 460 TDYTTESEKILVPVKVP 410
+E E++ V + +P
Sbjct: 1630 ---VSEYERLGVVLDIP 1643
>emb|CAI65402.1| polyprotein [Potato virus Y strain Wilga]
Length = 3061
Score = 79.3 bits (194), Expect = 1e-11
Identities = 108/435 (24%), Positives = 184/435 (42%), Gaps = 8/435 (1%)
Frame = -1
Query: 1690 FLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVEN 1514
FLV G G GKST LP H++ G VL+ + +A V +QLS F
Sbjct: 1238 FLVRGAVGSGKSTGLPVHLSVA----GSVLLIEP--TRPLAENVFKQLSSEPFFKKPTLR 1291
Query: 1513 LRSEHVRRPSKGLVVYYAAISDFLALLAAHSDICQLLNLSYVYVDEAHERRPENKMLQIL 1334
+R + S + ++ AL ++ QL ++V DE H P + L
Sbjct: 1292 MRGNSIFGSSP-----ISVMTSGFALHYFANNRSQLAQFNFVIFDECHVLDPSAMAFRSL 1346
Query: 1333 VAMGWFPKQRVFFGSATARAANVEENASRG-RVVKSTKPEFLKLVAGEFQKVSPLHHTNI 1157
+++ + +V SAT VE + +++ FL V + K +
Sbjct: 1347 LSV-YHQACKVLKVSATPVGREVEFTTQQPVKLIVEDTLSFLSFVDAQGSKTNA-DVVQF 1404
Query: 1156 VGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVDCLKSNGVCVLLADSV 977
L++ +S +E DT ++ V + ++V S ++A ++
Sbjct: 1405 GSNVLVYVSSYNEVDTLAKLLTDKNMMVTKVDGRTMKHGCLEIVTKGTSARPHFVVATNI 1464
Query: 976 LQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDERIQRMGRVGRCEKGTGY-F 800
++ G TL ID VVD G +D+D ++Y V+ ERIQR+GRVGR +KG
Sbjct: 1465 IENGVTLDIDVVVDFGLKVSPFLDIDNRSIAYNKVSVSYGERIQRLGRVGRFKKGVALRI 1524
Query: 799 ADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASYFGEMSLQKVAVLLHSTLH 620
+ +E + TE L C +NL V S G ++++V + L
Sbjct: 1525 GHTEKGIIEIPSMIATE--AALACFAYNLPVMTGGVS--TSLIGNCTVRQVKTMQQFELS 1580
Query: 619 PVVLSHYLDYEGNVVSSISD-----AFRSCLPMTKLQDSSRSIVSYANNYWLTQHTGSTD 455
P + +++ ++G++ I D R C MT L D +SI A++ WL+
Sbjct: 1581 PFFIQNFVAHDGSMHPVIHDILKKYKLRDC--MTPLCD--QSIPYRASSTWLS------- 1629
Query: 454 YTTESEKILVPVKVP 410
+E E++ V +++P
Sbjct: 1630 -VSEYERLGVALEIP 1643
>emb|CAC84433.1| polyprotein, partial [Sorghum mosaic virus]
Length = 603
Score = 79.0 bits (193), Expect = 1e-11
Identities = 105/431 (24%), Positives = 179/431 (41%), Gaps = 25/431 (5%)
Frame = -1
Query: 1693 KFLVAGT-GVGKSTKLPFHITQTTGENGIVLMPDLLLASTVASYVKEQLSKPSGFVVTVE 1517
+FL+ G G GKST LP+H++Q G VL+ L +A V QL P V
Sbjct: 76 EFLLRGAVGSGKSTGLPYHLSQ----RGKVLL--LEPTRPLAENVCRQLQGPPFNVSPTL 129
Query: 1516 NLRSEHVRRPSKGLVVYYAAISDF-LALLAAHSDICQLLNLSYVYVDEAH---------- 1370
+R S G S F L + A + D ++ N Y+ DE H
Sbjct: 130 QMRG----LSSFGSTPITIMTSGFALHMYANNPD--KISNYDYIIFDECHIMEAPAMAFY 183
Query: 1369 ----ERRPENKMLQILVAMGWFPKQRVFFGSATARAANVEENASRGRVVKSTKPEFLKLV 1202
E + K++++ P + F + +V EN ++ + V L
Sbjct: 184 CLLKEYNFDGKIIKVSATP---PGRECEFSTQYPVDIHVCENLTQNQFV---------LE 231
Query: 1201 AGEFQKVSPLHHTNIVGRTLIFPASVSEFDTFYDYYVSHDIPVIVFTSISSSLKYKDVVD 1022
G K + N + L++ AS S+ D+ H VI + +D
Sbjct: 232 LGTGSKADATKYGNNI---LVYVASYSDVDSLARALTEHHYSVI---KVDGRTMKQDTTG 285
Query: 1021 CLKSNGV----CVLLADSVLQTGHTLQIDKVVDCGYVRVLDVDLDKSVLSYKIRPVTLDE 854
+ +NG C ++A ++++ G TL +D V D G ++D+D + Y+ ++ E
Sbjct: 286 -IHTNGTDARKCFVVATNIIENGVTLDVDVVADFGLKVSAELDVDNRAIMYRKVSISYGE 344
Query: 853 RIQRMGRVGRCEKGTGYFADIDSYKMEYEVIPHTECYVYLWCCMFNLSSQLDYVQKYASY 674
RIQR+GRVGR + GT + + + K E+ C + L V +Y
Sbjct: 345 RIQRLGRVGRTKPGTIIRSGV-TMKGSQEIPAMIATEAAFQCFAYGLKVITHNVS--TTY 401
Query: 673 FGEMSLQKVAVLLHSTLHPVVLSHYLDYEGNVVSSISDAFRSCLPMTKLQDS----SRSI 506
+ ++++ ++H L P ++S + ++G++ I + L KL+DS +
Sbjct: 402 LAKCTVKQARTMMHFELSPFIMSELVKFDGSMHPQIHEK----LKKYKLRDSVIMLRTNA 457
Query: 505 VSYAN-NYWLT 476
V Y N + WLT
Sbjct: 458 VPYPNVHNWLT 468