BLASTX nr result

ID: Cinnamomum23_contig00047105 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00047105
         (417 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010513509.1| PREDICTED: uncharacterized protein LOC104789...    55   4e-07
gb|AAD29768.1|AF076243_15 putative polyprotein [Arabidopsis thal...    59   1e-06
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi...    58   1e-06
emb|CAN79422.1| hypothetical protein VITISV_002126 [Vitis vinifera]    53   2e-06
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    56   5e-06

>ref|XP_010513509.1| PREDICTED: uncharacterized protein LOC104789522 [Camelina sativa]
          Length = 1391

 Score = 55.5 bits (132), Expect(2) = 4e-07
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = -3

Query: 304 DNCEGIEEWNKYLGSLLDIKDLGQLK*FLRIEVSISHQEIF*SKQTYALELLHYFRNLGT 125
           D+ EGI+     L S  DIKDLG+LK FL IEV  S + +F S++ Y L+LL+    LG 
Sbjct: 798 DDKEGIQNTKSLLKSTFDIKDLGELKYFLGIEVCRSEEGLFLSQRKYTLDLLNDTGKLGA 857

Query: 124 KPRDTSL 104
           KP +T +
Sbjct: 858 KPVNTPI 864



 Score = 25.0 bits (53), Expect(2) = 4e-07
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 62  LGPYQRIVEKLIYFII 15
           +G YQRIV KLIY  I
Sbjct: 884 IGQYQRIVGKLIYLTI 899


>gb|AAD29768.1|AF076243_15 putative polyprotein [Arabidopsis thaliana]
            gi|7267198|emb|CAB77909.1| putative polyprotein
            [Arabidopsis thaliana]
          Length = 1017

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = -3

Query: 304  DNCEGIEEWNKYLGSLLDIKDLGQLK*FLRIEVSISHQEIF*SKQTYALELLHYFRNLGT 125
            DN EGI +   +L S  DIKDLG+LK FL IEV  S + +F S++ Y L+LL+    LG+
Sbjct: 929  DNKEGIHDTKLFLKSTFDIKDLGELKYFLGIEVCRSPEGLFLSQRKYTLDLLNETGKLGS 988

Query: 124  KPRDTSL 104
            KP  T L
Sbjct: 989  KPAKTPL 995


>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1156

 Score = 58.2 bits (139), Expect(2) = 1e-06
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
 Frame = -3

Query: 415  LLQFLFSRYQADHSAF------VEREILGGNNFKCICGRHSY*DNCEGIEEWNKYLGSLL 254
            LL+F F +   D+S F      +E  +L   +   ICG   Y      ++++ +YLG   
Sbjct: 802  LLRFGFVQGHEDYSFFSYTRNGIELRVLVYVDDLLICGNDGY-----MLQKFKEYLGRCF 856

Query: 253  DIKDLGQLK*FLRIEVSISHQEIF*SKQTYALELLHYFRNLGTKPRDTSLFQ 98
             +KDLG+LK FL IEVS   + IF S++ YAL+++    NLG +P  T L Q
Sbjct: 857  SMKDLGKLKYFLGIEVSRGSEGIFLSQRKYALDIITDSGNLGCRPALTPLEQ 908



 Score = 20.4 bits (41), Expect(2) = 1e-06
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 56  PYQRIVEKLIYFI 18
           PY+R+V +L+Y +
Sbjct: 925 PYRRLVGRLLYLL 937


>emb|CAN79422.1| hypothetical protein VITISV_002126 [Vitis vinifera]
          Length = 1065

 Score = 53.1 bits (126), Expect(2) = 2e-06
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
 Frame = -3

Query: 415  LLQFLFSRYQADHSAFVEREILGGNNFKCICGRHSY*DNC-------EGIEEWNKYLGSL 257
            +L+  + + QADH+ FV++   G      +     Y D+        E +++  KYL   
Sbjct: 753  VLKLGYKQGQADHTLFVKKSHAGKMAILIV-----YVDDIILSGNDMEELQKLKKYLSEE 807

Query: 256  LDIKDLGQLK*FLRIEVSISHQEIF*SKQTYALELLHYFRNLGTKPRDTSLFQAKE 89
             ++KDLG LK FL +EV+ S + I  S++ Y L+LL     LG KP DT +   K+
Sbjct: 808  FEVKDLGNLKYFLGMEVARSRKGIVVSQRKYILDLLKETGMLGCKPIDTPMDSQKK 863



 Score = 25.0 bits (53), Expect(2) = 2e-06
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 59  GPYQRIVEKLIYF 21
           G YQR VE+LIYF
Sbjct: 876 GRYQRFVERLIYF 888


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 56.2 bits (134), Expect(2) = 5e-06
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = -3

Query: 415  LLQFLFSRYQADHSAF------VEREILGGNNFKCICGRHSY*DNCEGIEEWNKYLGSLL 254
            LL+F F +   D+S F      +E  +L   +   ICG   Y      ++++  YL    
Sbjct: 1155 LLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGY-----MLQKFKDYLSRCF 1209

Query: 253  DIKDLGQLK*FLRIEVSISHQEIF*SKQTYALELLHYFRNLGTKPRDTSLFQ 98
             +KDLG+LK FL IEVS   + IF S++ YAL+++    NLG++P  T L Q
Sbjct: 1210 SMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQ 1261



 Score = 20.4 bits (41), Expect(2) = 5e-06
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 56   PYQRIVEKLIYFI 18
            PY+R+V +L+Y +
Sbjct: 1278 PYRRLVGRLLYLL 1290


Top