BLASTX nr result

ID: Cinnamomum23_contig00042866 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00042866
         (722 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97563.1| retrotransposon protein, putative, unclassified [...    60   1e-06
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...    58   5e-06
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    58   5e-06
gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indi...    58   6e-06
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...    58   6e-06
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...    58   6e-06

>gb|ABA97563.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 839

 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253 NIIIAKELFHHMGCHRENKVG--TLKFNIHKADGSTLWNFLSNCLFQLGFNQE---VMMR 89
           NI++A EL H+M   R  + G   LK ++ KA     W FL + + +LGFNQE   ++M+
Sbjct: 427 NILVAYELTHYMRQKRNGETGYAALKLDMSKAYDRVEWGFLKDMMLKLGFNQEWTQLIMK 486

Query: 88  CVPTVTGRVWIYRFLIGLITSNRGLRQGD 2
           C+  VT R+ +   LI +I   RGL+Q D
Sbjct: 487 CITFVTYRIRVNGELIEVIQPERGLQQRD 515


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253  NIIIAKELFHHMGCHRENKVG--TLKFNIHKADGSTLWNFLSNCLFQLGFNQE---VMMR 89
            NI+IA E+ H+M   R  +VG    K ++ KA     W+FL + + +LGF+ +   ++M+
Sbjct: 778  NILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMK 837

Query: 88   CVPTVTGRVWIYRFLIGLITSNRGLRQGD 2
            CV TVT R+ +   L    +  RGLRQGD
Sbjct: 838  CVSTVTYRIRVNGELSESFSPERGLRQGD 866


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 58.2 bits (139), Expect = 5e-06
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253  NIIIAKELFHHMGCHRENKVG--TLKFNIHKADGSTLWNFLSNCLFQLGFNQE---VMMR 89
            NI+IA E+ H+M   R  +VG    K ++ KA     W+FL + + +LGF+ +   ++M+
Sbjct: 805  NILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMK 864

Query: 88   CVPTVTGRVWIYRFLIGLITSNRGLRQGD 2
            CV TVT R+ +   L    +  RGLRQGD
Sbjct: 865  CVSTVTYRIRVNGELSESFSPGRGLRQGD 893


>gb|EEC84982.1| hypothetical protein OsI_32248 [Oryza sativa Indica Group]
           gi|222630794|gb|EEE62926.1| hypothetical protein
           OsJ_17731 [Oryza sativa Japonica Group]
          Length = 893

 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253 NIIIAKELFHHMGCHRENKVG--TLKFNIHKADGSTLWNFLSNCLFQLGFNQ---EVMMR 89
           N+++A E+ H M   R  + G   LK ++ KA     W+FL   + +LGF +   +++MR
Sbjct: 224 NVLLAYEMTHFMQTKRTGREGYAALKLDMSKAYDRVEWSFLEKMMVRLGFAEGWVKLIMR 283

Query: 88  CVPTVTGRVWIYRFLIGLITSNRGLRQGD 2
           CV TVT R+ +   L   I  +RGLRQGD
Sbjct: 284 CVSTVTYRIKVNGDLTDQIIPSRGLRQGD 312


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253  NIIIAKELFHHMGCHRENKVG--TLKFNIHKADGSTLWNFLSNCLFQLGFNQE---VMMR 89
            NI+IA E+ H+M   R  +VG    K ++ KA     W+FL + + +LGF+ +   ++M+
Sbjct: 750  NILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMK 809

Query: 88   CVPTVTGRVWIYRFLIGLITSNRGLRQGD 2
            CV TVT R+ +   L    +  RGLRQGD
Sbjct: 810  CVSTVTYRIRVNGELSESFSPERGLRQGD 838


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
 Frame = -2

Query: 253  NIIIAKELFHHMGCHRENKVG--TLKFNIHKADGSTLWNFLSNCLFQLGFNQE---VMMR 89
            NI+IA E+ H+M   R  +VG    K ++ KA     W+FL + + +LGF+ +   ++M+
Sbjct: 746  NILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMK 805

Query: 88   CVPTVTGRVWIYRFLIGLITSNRGLRQGD 2
            CV TVT R+ +   L    +  RGLRQGD
Sbjct: 806  CVSTVTYRIRVNGELSESFSPERGLRQGD 834


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