BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00042437
         (792 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [The...    78   1e-26
ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, part...    74   3e-26
ref|XP_008347875.1| PREDICTED: uncharacterized protein LOC103411...    79   4e-26
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...    73   7e-26
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...    77   1e-25
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]               73   2e-25
ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prun...    73   2e-25
ref|XP_010278719.1| PREDICTED: uncharacterized protein LOC104612...    83   2e-25
ref|XP_007037024.1| Uncharacterized protein TCM_013224 [Theobrom...    78   2e-25
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun...    74   4e-25
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    77   6e-25
ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobrom...    75   6e-25
ref|XP_007200198.1| hypothetical protein PRUPE_ppa016013mg, part...    73   6e-25
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                   77   8e-25
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                   77   2e-24
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun...    76   2e-24
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                          75   3e-24
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...    74   3e-24
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...    77   3e-24
dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indic...    77   9e-24

>ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508700944|gb|EOX92840.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 647

 Score = 78.2 bits (191), Expect(2) = 1e-26
 Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
 Frame = +2

Query: 335 FGEVVRLHGN----LKTNHIRFSKSQFWRIV-EILLTNLQLSSAYYLQMDRQTKVINHML 499
           F EVVRLHG     +    ++F    FWR +     T L+ SS  + Q D QT+V+N  L
Sbjct: 407 FCEVVRLHGIPTSIVSDRDVKFM-GHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSL 465

Query: 500 ETCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSG 679
                           +V+P  E AY N  + S++K+PF++ Y     +VLDLV + +  
Sbjct: 466 GNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQEA 525

Query: 680 KASEDEENFD*HIRSIHKEV*KNTEGSNAKY 772
           + S + E F  HIR IH+EV    + SNA+Y
Sbjct: 526 RVSNEGELFAYHIRKIHEEVKAALKASNAEY 556



 Score = 69.7 bits (169), Expect(2) = 1e-26
 Identities = 35/82 (42%), Positives = 46/82 (56%)
 Frame = +3

Query: 75  HLDVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSM 254
           H DV R V+RC T    +G  +NT LY P+L P A    + ++FV GLP+  +  D + +
Sbjct: 320 HRDVERLVKRCSTCLFGKGSAQNTGLYVPLLEPDAPWIHLSMDFVLGLPKIAKGFDSIFV 379

Query: 255 VVDQFSNMGHFIPHLKA*SFLH 320
           VV QFS M HFIP  K     H
Sbjct: 380 VVYQFSKMAHFIPCFKTSDATH 401


>ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
            gi|462403623|gb|EMJ09180.1| hypothetical protein
            PRUPE_ppa015715mg, partial [Prunus persica]
          Length = 1445

 Score = 74.3 bits (181), Expect(2) = 3e-26
 Identities = 32/74 (43%), Positives = 48/74 (64%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV   + +CRT Q A+ +  NT LYTP+ +P    +D+ ++FV GLP+T R  D + ++V
Sbjct: 1023 DVAHLISQCRTCQLAKARKRNTGLYTPLPIPHTPWKDLSMDFVLGLPKTSRGYDSIFVIV 1082

Query: 261  DQFSNMGHFIPHLK 302
            D+FS M HF+P  K
Sbjct: 1083 DRFSKMAHFLPCAK 1096



 Score = 72.0 bits (175), Expect(2) = 3e-26
 Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
 Frame = +2

Query: 335  FGEVVRLHGN----LKTNHIRFSKSQFWRIV-EILLTNLQLSSAYYLQMDRQTKVINHML 499
            F EVVRLHG     +    ++F  S FW+ + ++  T L+ SSA++ Q D QT+V+N  L
Sbjct: 1108 FKEVVRLHGLPVSIVSDRDVKFV-SYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSL 1166

Query: 500  ETC--CIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQR 673
                 C+V    G  N  ++LP  E AY N  + S  KSPF++V+  +  + +DLV +  
Sbjct: 1167 GDLLRCLVGDKPG--NWDLLLPVAEFAYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPV 1224

Query: 674  SGKASEDEENFD*HIRSIHKEV 739
            + + S+   +F  HIR +H +V
Sbjct: 1225 AARTSDSATSFAEHIRQLHDDV 1246


>ref|XP_008347875.1| PREDICTED: uncharacterized protein LOC103411008 [Malus domestica]
          Length = 984

 Score = 79.0 bits (193), Expect(2) = 4e-26
 Identities = 37/70 (52%), Positives = 49/70 (70%)
 Frame = +3

Query: 81  DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
           DV   V +C T Q ++G+++NT LY P+ VP    ED+ ++FV GLPRTPR MD V +VV
Sbjct: 737 DVGAIVRKCYTCQVSKGQVQNTGLYMPLPVPNDIWEDIAMDFVLGLPRTPRGMDXVFVVV 796

Query: 261 DQFSNMGHFI 290
           D+FS M HFI
Sbjct: 797 DRFSKMAHFI 806



 Score = 67.0 bits (162), Expect(2) = 4e-26
 Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
 Frame = +2

Query: 335  FGEVVRLHGNLKT-NHIRFSK--SQFW-RIVEILLTNLQLSSAYYLQMDRQTKVINHMLE 502
            F EVVRLHG  K+    R +K  S FW  +  +  T L  S+  + Q D QT+V N  L 
Sbjct: 822  FREVVRLHGVPKSITSDRDTKFLSHFWITLWRMFGTTLNRSTTAHPQTDGQTEVXNRTLG 881

Query: 503  TCCIVWWVAGRSNG--GVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRS 676
               +V  + G         LP +E +Y +  H +  KSPF +VY +   +V+DLV + R 
Sbjct: 882  N--MVRSICGEKTKQWDYALPQMEFSYNSXVHRATGKSPFSIVYTATPHHVVDLVKLPRG 939

Query: 677  GKASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
               S   EN    + +I  EV +  E +N KY EA D+
Sbjct: 940  HGLSIAXENMAEDVVAIRDEVKQRLEQTNVKYKEAVDK 977


>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score = 72.8 bits (177), Expect(2) = 7e-26
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFW-RIVEILLTNLQLSSAYYLQMDRQTKVINHMLE 502
            F EVVRLHG   ++ ++      S FW  +  +  T L  SS  + Q D QT+V N  L 
Sbjct: 1222 FREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLG 1281

Query: 503  TCCIVWWVAGRS--NGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRS 676
               +V  V G         LP VE AY +  H +  KSPF +VY +   +V+DLV + R 
Sbjct: 1282 N--MVRSVCGEKPKQWDYALPQVEFAYNSAVHSATGKSPFSIVYTAMPNHVVDLVKLPRG 1339

Query: 677  GKASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + S   +N    + ++  EV +  E +NAKY  A+D+
Sbjct: 1340 QQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADK 1377



 Score = 72.4 bits (176), Expect(2) = 7e-26
 Identities = 34/70 (48%), Positives = 48/70 (68%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV   V +C T Q ++G+++NT LY P+ VP    +D+ ++FV GLPRT R +D V +VV
Sbjct: 1137 DVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGVDSVFVVV 1196

Query: 261  DQFSNMGHFI 290
            D+FS M HFI
Sbjct: 1197 DRFSKMAHFI 1206


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score = 76.6 bits (187), Expect(2) = 1e-25
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV RFV RC T Q A+ +L    LY P+ VP+   ED+ ++FV GLPRT +  D + +VV
Sbjct: 1274 DVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVV 1333

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1334 DRFSKMAHFIP 1344



 Score = 67.8 bits (164), Expect(2) = 1e-25
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILLTN-LQLSSAYYLQMDRQTKVINHMLE 502
            F E++RLHG    + ++      S FWR +   L N L  S+  + Q D QT+V+N  L 
Sbjct: 1359 FREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTLS 1418

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T         +      LPH+E AY    H + +  PF++VY       +DL+ +  S K
Sbjct: 1419 TMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEK 1478

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D +     I  IH+   +N E  NAKY  A D+
Sbjct: 1479 VNFDAKERSELILKIHELTKENIERMNAKYKLARDK 1514


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 72.8 bits (177), Expect(2) = 2e-25
 Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
 Frame = +2

Query: 335  FGEVVRLHGNLKT----NHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHML 499
            F EVVRLHG  KT       +F  S FW+ +   L T L  S+  + Q D QT+V+N  L
Sbjct: 1506 FREVVRLHGMPKTIVSDRDTKFL-SYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTL 1564

Query: 500  ETCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSG 679
             T                LPHVE AY +  H + + SPF++VY  N T  LDL+ +  S 
Sbjct: 1565 STLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLPLSE 1624

Query: 680  KASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
            + S D +     ++ IH++  KN E    +Y + +++
Sbjct: 1625 RVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANK 1661



 Score = 71.2 bits (173), Expect(2) = 2e-25
 Identities = 35/80 (43%), Positives = 48/80 (60%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV R  ERC T + A+ K +   LYTP+ +P+    D+ ++FV GLPRT    D + +VV
Sbjct: 1421 DVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVV 1480

Query: 261  DQFSNMGHFIPHLKA*SFLH 320
            D+FS M HFIP  K    +H
Sbjct: 1481 DRFSKMAHFIPCHKTDDAIH 1500


>ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prunus persica]
            gi|462402465|gb|EMJ08022.1| hypothetical protein
            PRUPE_ppa025991mg [Prunus persica]
          Length = 1274

 Score = 73.2 bits (178), Expect(2) = 2e-25
 Identities = 32/74 (43%), Positives = 48/74 (64%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV   + +CRT Q A+ +  NT +YTP+ +P A  +D+ ++FV GLP+T R  D + ++V
Sbjct: 852  DVAHLISQCRTCQLAKARKRNTGVYTPLPIPHAPWKDLSMDFVLGLPKTSRGYDSIFVIV 911

Query: 261  DQFSNMGHFIPHLK 302
            D FS M HF+P  K
Sbjct: 912  DCFSKMAHFLPCAK 925



 Score = 70.9 bits (172), Expect(2) = 2e-25
 Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 7/142 (4%)
 Frame = +2

Query: 335  FGEVVRLHGNLKT----NHIRFSKSQFWRIV-EILLTNLQLSSAYYLQMDRQTKVINHML 499
            F EVVRLHG L +       +F  S FW+ + ++  T L+ SSA++ Q D QT+V+N  L
Sbjct: 937  FKEVVRLHGLLVSIVSDRDFKFV-SYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSL 995

Query: 500  ETC--CIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQR 673
                 C+V    G  N  ++LP  E  Y N  + S  KSPF++V+  +  + +DLV +  
Sbjct: 996  GDLLHCLVGDKPG--NWDLLLPVAEFTYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPV 1053

Query: 674  SGKASEDEENFD*HIRSIHKEV 739
            + ++S+   +F  HIR +H +V
Sbjct: 1054 AARSSDSATSFAEHIRQLHDDV 1075


>ref|XP_010278719.1| PREDICTED: uncharacterized protein LOC104612828 [Nelumbo nucifera]
          Length = 925

 Score = 83.2 bits (204), Expect(2) = 2e-25
 Identities = 38/71 (53%), Positives = 50/71 (70%)
 Frame = +3

Query: 81  DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
           DV   V RC   Q A+G+ +NT LY P+ +P A  ED+ ++FV GLP+TPRNMD V +VV
Sbjct: 661 DVTTIVSRCYICQTAKGQAQNTGLYMPLPIPTAIWEDLPMDFVLGLPKTPRNMDSVFIVV 720

Query: 261 DQFSNMGHFIP 293
           D+FS M HF+P
Sbjct: 721 DRFSKMAHFLP 731



 Score = 60.8 bits (146), Expect(2) = 2e-25
 Identities = 52/157 (33%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
 Frame = +2

Query: 335  FGEVVRLHGNLKT----NHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHML 499
            F E+VRLHG  KT       RF  S FW  +  L  ++L  SS  + Q D  T+V+N  L
Sbjct: 746  FKEIVRLHGVPKTITSDRDTRFL-SHFWMTLWRLFDSSLNFSSTAHPQTDGLTEVVNRTL 804

Query: 500  ETCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSG 679
                              +   E AY N  H S  +SPF +VY     + LDLV + R  
Sbjct: 805  GNLIRSISRERPKQWDFAIAQAEFAYNNAVHSSTGRSPFSIVYMKVPNHALDLVKLPRVP 864

Query: 680  KASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             A    E     I+S+   V +  E +NAKY  A D+
Sbjct: 865  NAL--AEQLAEQIQSVQDAVKQKLEQTNAKYKMAKDK 899


>ref|XP_007037024.1| Uncharacterized protein TCM_013224 [Theobroma cacao]
           gi|508774269|gb|EOY21525.1| Uncharacterized protein
           TCM_013224 [Theobroma cacao]
          Length = 412

 Score = 78.2 bits (191), Expect(2) = 2e-25
 Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
 Frame = +2

Query: 335 FGEVVRLHG---NLKTNHIRFSKSQFWRIV-EILLTNLQLSSAYYLQMDRQTKVINHMLE 502
           F EVVRLHG   ++ +N        FW+ +     T L+ SS  + Q D QTKV+N  L 
Sbjct: 99  FREVVRLHGIPTSIVSNRDVKFMGHFWKTLWRKFGTELKYSSTCHPQTDGQTKVVNRSLG 158

Query: 503 TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
                          +V+P  E AY N  + S++K+PF+  Y     +VLDLV + +  +
Sbjct: 159 NMLRYLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEAR 218

Query: 683 ASEDEENFD*HIRSIHKEV*KNTEGSNAKY 772
            S   E F  HIR IH+EV    + SNA+Y
Sbjct: 219 VSNKGELFADHIRKIHEEVKAALKASNAEY 248



 Score = 65.5 bits (158), Expect(2) = 2e-25
 Identities = 31/71 (43%), Positives = 43/71 (60%)
 Frame = +3

Query: 81  DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
           DV R V+RC      +G  +NT LY P+  P A    + ++FV GLP+T +  D + +VV
Sbjct: 14  DVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVV 73

Query: 261 DQFSNMGHFIP 293
           D+FS M HFIP
Sbjct: 74  DRFSKMAHFIP 84


>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
            gi|462402874|gb|EMJ08431.1| hypothetical protein
            PRUPE_ppa026856mg [Prunus persica]
          Length = 1493

 Score = 73.6 bits (179), Expect(2) = 4e-25
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFW-RIVEILLTNLQLSSAYYLQMDRQTKVINHMLE 502
            F EVVRLHG   ++ ++      S FW  +  +  T L  SS  + Q D QT+V N  L 
Sbjct: 1230 FREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLG 1289

Query: 503  TCCIVWWVAGRS--NGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRS 676
               +V  V G         LP +E AY +  H +  KSPF +VY +   +V+DLV + R 
Sbjct: 1290 N--MVRSVCGEKPKQWDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRG 1347

Query: 677  GKASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + S   +N    + ++  EV +  E +NAKY  A+DR
Sbjct: 1348 QQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADR 1385



 Score = 69.3 bits (168), Expect(2) = 4e-25
 Identities = 32/70 (45%), Positives = 46/70 (65%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV   V +C T Q ++G+++NT LY P+ VP    +D+ ++FV G PRT R +D V +V 
Sbjct: 1145 DVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGFPRTQRRVDSVFVVA 1204

Query: 261  DQFSNMGHFI 290
            D+FS M HFI
Sbjct: 1205 DRFSKMAHFI 1214


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 77.0 bits (188), Expect(2) = 6e-25
 Identities = 37/71 (52%), Positives = 46/71 (64%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV RFV RC T Q A+ +L    LY P+ VP    ED+ ++FV GLPRT R  D + +VV
Sbjct: 1230 DVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVV 1289

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1290 DRFSKMAHFIP 1300



 Score = 65.1 bits (157), Expect(2) = 6e-25
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHMLE 502
            F E+VRLHG    + ++      S FWR +   L T L  S+  + Q D QT+V+N  L 
Sbjct: 1315 FREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLS 1374

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T                LPH+E AY    H + +  PF++VY       +DL+ +  S K
Sbjct: 1375 TMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEK 1434

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D +     +  +H+   +N E  NAKY  A D+
Sbjct: 1435 LNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDK 1470



 Score = 47.8 bits (112), Expect(2) = 1e-09
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWR-IVEILLTNLQLSSAYYLQMDRQTKVINHMLE 502
            F  +V LHG    + ++      S FW+ + E L T L  S+AY+ Q D QT+ +N +LE
Sbjct: 2137 FARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILE 2196

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVY 628
                   +         LP+ E +Y N    S+Q +P++ +Y
Sbjct: 2197 DMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALY 2238



 Score = 42.7 bits (99), Expect(2) = 1e-09
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTA-LYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMV 257
            ++  FV  C   Q  + + +  A L  P+ VP    +++ ++F+ GLP+T    D + +V
Sbjct: 2051 EIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVV 2110

Query: 258  VDQFSNMGHFIP 293
            VD+ + +  FIP
Sbjct: 2111 VDRLTKVARFIP 2122


>ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobroma cacao]
            gi|508727408|gb|EOY19305.1| Uncharacterized protein
            TCM_044370 [Theobroma cacao]
          Length = 1306

 Score = 74.7 bits (182), Expect(2) = 6e-25
 Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
 Frame = +2

Query: 335  FGEVVRLHGN----LKTNHIRFSKSQFWRIV-EILLTNLQLSSAYYLQMDRQTKVINHML 499
            F EVVRLHG     +    ++F    FWR +     T L+ SS  + Q D QT+V+N  L
Sbjct: 1035 FCEVVRLHGIPTSIVSDRDVKFM-GHFWRTLWRKFGTELKYSSTCHPQTDSQTEVVNRSL 1093

Query: 500  ETCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSG 679
                            +V P  E AY N  + S++K+PF+  Y     +VLDLV + +  
Sbjct: 1094 GNILRCLIQNNPKTWDLVKPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEA 1153

Query: 680  KASEDEENFD*HIRSIHKEV*KNTEGSNAKY 772
            + S + E F  HI+ IH+EV    + SNA+Y
Sbjct: 1154 RVSNEGELFADHIQKIHEEVKAALKASNAEY 1184



 Score = 67.4 bits (163), Expect(2) = 6e-25
 Identities = 32/71 (45%), Positives = 44/71 (61%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV R V+RC T    +G  +NT LY P+  P A    + ++FV GLP+T +  D + +VV
Sbjct: 950  DVERLVKRCPTCLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVV 1009

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1010 DRFSKMAHFIP 1020


>ref|XP_007200198.1| hypothetical protein PRUPE_ppa016013mg, partial [Prunus persica]
            gi|462395598|gb|EMJ01397.1| hypothetical protein
            PRUPE_ppa016013mg, partial [Prunus persica]
          Length = 1057

 Score = 73.2 bits (178), Expect(2) = 6e-25
 Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFW-RIVEILLTNLQLSSAYYLQMDRQTKVINHMLE 502
            F EVVRLHG   ++ +N      S FW  +  +  T L  S+  + Q D QT+V N  L 
Sbjct: 788  FREVVRLHGVPTSITSNRDTKFLSHFWITLWRLFGTTLNRSNTAHPQTDGQTEVTNRTLG 847

Query: 503  TCCIVWWVAGRS--NGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRS 676
               +V  V G         LP +E AY +  H +  KSPF +VY +   +V+DLV + R 
Sbjct: 848  N--MVRSVCGEKPKRWDYALPQMEFAYNSAVHSATGKSPFSIVYTAIPNHVVDLVKLPRG 905

Query: 677  GKASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + S   +N    + ++  EV +  E +NAKY  A+DR
Sbjct: 906  QQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADR 943



 Score = 68.9 bits (167), Expect(2) = 6e-25
 Identities = 32/70 (45%), Positives = 47/70 (67%)
 Frame = +3

Query: 81  DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
           D+   V +C T Q ++G+++NT LY P+ VP    +D+ ++FV GLPRT   +D V +VV
Sbjct: 703 DIGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQSGVDSVFVVV 762

Query: 261 DQFSNMGHFI 290
           D+FS M HFI
Sbjct: 763 DRFSKMTHFI 772


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score = 76.6 bits (187), Expect(2) = 8e-25
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV RFV RC T Q A+ +L    LY P+ VP+   ED+ ++FV GLPRT +  D + +VV
Sbjct: 1286 DVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVV 1345

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1346 DRFSKMAHFIP 1356



 Score = 65.1 bits (157), Expect(2) = 8e-25
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHMLE 502
            F E++RLHG    + ++      S FWR +   L T L  S+  + Q D QT+V+N  L 
Sbjct: 1371 FREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLS 1430

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T                LPH+E AY    H + +  PF++VY       +DL+ I  S K
Sbjct: 1431 TMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEK 1490

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D +     I  +H+   +N E  NA+Y  A D+
Sbjct: 1491 VNFDAKERAELILKMHELTKENIERMNARYKLAGDK 1526


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score = 76.6 bits (187), Expect(2) = 2e-24
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV RFV RC T Q A+ +L    LY P+ VP+   ED+ ++FV GLPRT +  D + +VV
Sbjct: 1289 DVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVV 1348

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1349 DRFSKMAHFIP 1359



 Score = 63.9 bits (154), Expect(2) = 2e-24
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHMLE 502
            F E++RLHG    + ++      S FWR +   L T L  S+  + Q D QT+V+N  L 
Sbjct: 1374 FREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLS 1433

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T                LPH+E AY    H + +  PF++VY       +DL+ I  S K
Sbjct: 1434 TMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEK 1493

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D +     I  +H+   +N E  NA+Y  A D+
Sbjct: 1494 VNFDAKERAELILKMHELTKENIERMNARYKLAGDK 1529


>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
            gi|462417202|gb|EMJ21939.1| hypothetical protein
            PRUPE_ppa023598mg [Prunus persica]
          Length = 1457

 Score = 76.3 bits (186), Expect(2) = 2e-24
 Identities = 36/70 (51%), Positives = 49/70 (70%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV   V +C T Q ++G+++NT LY P+ VP    +D+ ++FV GLPRT R MD V +VV
Sbjct: 1113 DVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGMDSVYVVV 1172

Query: 261  DQFSNMGHFI 290
            D+FSNM HFI
Sbjct: 1173 DRFSNMAHFI 1182



 Score = 63.9 bits (154), Expect(2) = 2e-24
 Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFW-RIVEILLTNLQLSSAYYLQMDRQTKVINHMLE 502
            F EVVRLHG   ++ ++      S FW  +  +  T L  SS  + Q D QT+V    L 
Sbjct: 1198 FREVVRLHGVPTSITSDRDAKFLSHFWITLWRLFGTTLNRSSTTHPQTDSQTEVTTRTLG 1257

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
                                VE AY +  H +  KSPF +VY +   +V+DLV + R  +
Sbjct: 1258 NM------------------VEFAYNSKIHSATGKSPFSIVYTAIPNHVVDLVKLPRGQQ 1299

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             S   +N    + ++  EV +  E +NAKY  A+DR
Sbjct: 1300 TSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADR 1335


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 75.5 bits (184), Expect(2) = 3e-24
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV R V RC T Q A+ +L    LY P+ VP+A  ED+ ++FV GLPRT +  D V +VV
Sbjct: 1233 DVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVFVVV 1292

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1293 DRFSKMAHFIP 1303



 Score = 64.3 bits (155), Expect(2) = 3e-24
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHMLE 502
            F E+VRLHG    + ++      S FWR +   L T L  S+  + Q D QT+V+N  L 
Sbjct: 1318 FREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLS 1377

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T                LPH+E AY    H + +  PF++VY       +DL+ +  S K
Sbjct: 1378 TMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEK 1437

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D       +  +H+   +N E  NA+Y  ASD+
Sbjct: 1438 LNFDATRRAELMLKLHETTKENIERMNARYKFASDK 1473


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score = 74.3 bits (181), Expect(2) = 3e-24
 Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
 Frame = +2

Query: 335  FGEVVRLHGN----LKTNHIRFSKSQFWRIV-EILLTNLQLSSAYYLQMDRQTKVINHML 499
            F E+V LHG     +   H++F    FWR +     T L+ SS  + Q D QT+V+N  L
Sbjct: 1139 FREIVILHGIPTSIVSDRHVKFM-GYFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSL 1197

Query: 500  ETCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSG 679
                            +V+P  E AY N  + S++K+PF+  Y     +VLDLV + +  
Sbjct: 1198 GNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEA 1257

Query: 680  KASEDEENFD*HIRSIHKEV*KNTEGSNAKY 772
            + S + E F   IR IH+EV    + SNA+Y
Sbjct: 1258 RVSNEGELFADQIRKIHEEVKAALKASNAEY 1288



 Score = 65.5 bits (158), Expect(2) = 3e-24
 Identities = 31/71 (43%), Positives = 43/71 (60%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV R V+RC      +G  +NT LY P+  P A    + ++FV GLP+T +  D + +VV
Sbjct: 1054 DVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVVV 1113

Query: 261  DQFSNMGHFIP 293
            D+FS M HFIP
Sbjct: 1114 DRFSKMAHFIP 1124


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 889

 Score = 77.0 bits (188), Expect(2) = 3e-24
 Identities = 38/80 (47%), Positives = 50/80 (62%)
 Frame = +3

Query: 81  DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
           DV RFV RC T Q A+ +L    LY P+ VP+   ED+ ++FV GLPRT +  D + +VV
Sbjct: 571 DVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVV 630

Query: 261 DQFSNMGHFIPHLKA*SFLH 320
           D+FS M HFIP  K+    H
Sbjct: 631 DRFSKMAHFIPCHKSDDATH 650



 Score = 62.8 bits (151), Expect(2) = 3e-24
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHMLE 502
            F E+VRLHG    + ++      S FWR +   L T L  S+  + Q D QT+V+N  L 
Sbjct: 656  FREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLS 715

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T                LPHVE AY +  H + +K PF++VY       +DL+ +  S +
Sbjct: 716  TMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSER 775

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D ++    +  +H+   +N E  N KY  A  +
Sbjct: 776  VNFDAKHRAELMLKLHETTKENIERMNIKYKLAGSK 811


>dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indica Group]
          Length = 1587

 Score = 77.0 bits (188), Expect(2) = 9e-24
 Identities = 38/80 (47%), Positives = 50/80 (62%)
 Frame = +3

Query: 81   DVPRFVERCRTWQAARGKLENTALYTPILVPAAS*EDVRVNFVYGLPRTPRNMDCVSMVV 260
            DV RFV RC T Q A+ +L    LY P+ VP+   ED+ ++FV GLPRT +  D + +VV
Sbjct: 1258 DVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVV 1317

Query: 261  DQFSNMGHFIPHLKA*SFLH 320
            D+FS M HFIP  K+    H
Sbjct: 1318 DRFSKMAHFIPCHKSDDATH 1337



 Score = 61.2 bits (147), Expect(2) = 9e-24
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
 Frame = +2

Query: 335  FGEVVRLHG---NLKTNHIRFSKSQFWRIVEILL-TNLQLSSAYYLQMDRQTKVINHMLE 502
            F E+VRLHG    + ++      S FWR +   L T L  S+  + Q D QT+V+N  L 
Sbjct: 1343 FREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLS 1402

Query: 503  TCCIVWWVAGRSNGGVVLPHVELAYGNPCHGSMQKSPFKMVYRSNLTNVLDLVLIQRSGK 682
            T                LPHVE AY    H + +K PF++VY       +DL+ +  S +
Sbjct: 1403 TMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSER 1462

Query: 683  ASEDEENFD*HIRSIHKEV*KNTEGSNAKYMEASDR 790
             + D +     +  +H+   +N E  N KY  A  +
Sbjct: 1463 VNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSK 1498