BLASTX nr result
ID: Cinnamomum23_contig00040508
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00040508
(324 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_005646347.1| chlorophyll a/b-binding protein [Coccomyxa s... 115 9e-24
ref|XP_005643590.1| hypothetical protein COCSUDRAFT_67947 [Cocco... 80 5e-13
ref|XP_005643589.1| chlorophyll a/b-binding protein [Coccomyxa s... 76 1e-11
ref|XP_005644739.1| chlorophyll a/b-binding protein, partial [Co... 69 1e-09
tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II... 65 2e-08
ref|XP_010275544.1| PREDICTED: chlorophyll a-b binding protein o... 64 3e-08
gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera] 64 3e-08
gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia ace... 64 4e-08
ref|XP_006357455.1| PREDICTED: chlorophyll a-b binding protein C... 64 5e-08
tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II... 64 5e-08
tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II... 64 5e-08
gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-P... 63 7e-08
gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precu... 63 7e-08
prf||1615137A chlorophyll a/b binding protein P25 63 9e-08
gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding p... 63 9e-08
sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding pro... 63 9e-08
sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding pro... 63 9e-08
ref|XP_009397219.1| PREDICTED: chlorophyll a-b binding protein 1... 63 9e-08
emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii] 63 9e-08
ref|XP_011095262.1| PREDICTED: chlorophyll a-b binding protein 1... 62 1e-07
>ref|XP_005646347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
gi|384248319|gb|EIE21803.1| chlorophyll a/b-binding
protein [Coccomyxa subellipsoidea C-169]
Length = 248
Score = 115 bits (289), Expect = 9e-24
Identities = 59/86 (68%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = -3
Query: 322 DYNRQAEVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVTA 143
DYNRQAEVRN R AML+ LGFA QA+VTGKGPLENA DHL+DPFG N+FT G+KG V A
Sbjct: 157 DYNRQAEVRNCRLAMLAALGFATQAYVTGKGPLENAVDHLRDPFGQNIFTQGEKGTAVVA 216
Query: 142 AFLVFAVTLHLAEITRLRAV-KGSAS 68
FL F+V LHLAE R A KG +S
Sbjct: 217 IFLAFSVVLHLAEGARQAAASKGYSS 242
>ref|XP_005643590.1| hypothetical protein COCSUDRAFT_67947 [Coccomyxa subellipsoidea
C-169] gi|384245553|gb|EIE19046.1| hypothetical protein
COCSUDRAFT_67947 [Coccomyxa subellipsoidea C-169]
Length = 737
Score = 80.1 bits (196), Expect = 5e-13
Identities = 47/101 (46%), Positives = 59/101 (58%)
Frame = -3
Query: 322 DYNRQAEVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVTA 143
DY RQ+EVRNAR AML+ LGF QA VTGKGPL+N DHL DP N+ G G KV A
Sbjct: 174 DYRRQSEVRNARLAMLANLGFWSQAAVTGKGPLQNLSDHLADPVNNNILATG-AGQKVAA 232
Query: 142 AFLVFAVTLHLAEITRLRAVKGSASKAATSP*AYSAKGSAV 20
+ V L E+ R R+ K + + +P +S + AV
Sbjct: 233 WLVGIVVLLGAVEVARSRSDKDTGTPQEAAPFCWSKQWYAV 273
>ref|XP_005643589.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
gi|384245552|gb|EIE19045.1| chlorophyll a/b-binding
protein [Coccomyxa subellipsoidea C-169]
Length = 172
Score = 75.9 bits (185), Expect = 1e-11
Identities = 40/71 (56%), Positives = 47/71 (66%)
Frame = -3
Query: 322 DYNRQAEVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVTA 143
DY RQ+EVRNAR AML+ LGF QA VTGKGPL+N DHL DP NV T G G V
Sbjct: 81 DYRRQSEVRNARLAMLANLGFWSQAAVTGKGPLQNLSDHLADPLHNNVLTQGKAGWYVFG 140
Query: 142 AFLVFAVTLHL 110
L F++ ++L
Sbjct: 141 GVLFFSLFINL 151
>ref|XP_005644739.1| chlorophyll a/b-binding protein, partial [Coccomyxa subellipsoidea
C-169] gi|384246706|gb|EIE20195.1| chlorophyll
a/b-binding protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 203
Score = 68.9 bits (167), Expect = 1e-09
Identities = 36/68 (52%), Positives = 44/68 (64%)
Frame = -3
Query: 322 DYNRQAEVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVTA 143
DY RQ+EVRN R AML+ +GFA QA TGKGPLEN DH+ DP N+F G +VT
Sbjct: 122 DYKRQSEVRNGRLAMLAFIGFASQAANTGKGPLENLKDHIADPTHNNIFA-SKVGPEVTL 180
Query: 142 AFLVFAVT 119
A + +T
Sbjct: 181 AVIAITLT 188
>tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 64.7 bits (156), Expect = 2e-08
Identities = 30/62 (48%), Positives = 39/62 (62%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVTAAFLVFA 125
EV+N R AML MLG +Q + TGKGPL+N DHL DP GAN+ T+ + + +FA
Sbjct: 36 EVKNGRLAMLGMLGLFMQGFATGKGPLQNLADHLADPTGANIITFHQRVLSDLGGVAMFA 95
Query: 124 VT 119
T
Sbjct: 96 AT 97
>ref|XP_010275544.1| PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like
[Nelumbo nucifera]
Length = 271
Score = 64.3 bits (155), Expect = 3e-08
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM +MLGF VQA VTGKGPLEN YDHL DPF N + +
Sbjct: 218 EIKNGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNNAWAF 262
>gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 64.3 bits (155), Expect = 3e-08
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM +MLGF VQA VTGKGPLEN YDHL DPF N + +
Sbjct: 216 EIKNGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNNAWAF 260
>gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 63.9 bits (154), Expect = 4e-08
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDK 161
E++N R AM SM GF VQA VTGKGP+EN +H+ DPF AN F+Y K
Sbjct: 199 EIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTANAFSYATK 246
>ref|XP_006357455.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Solanum tuberosum]
Length = 285
Score = 63.5 bits (153), Expect = 5e-08
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFT 173
E++N R AM SMLGF +QA+VTGKGP+EN HL DPFG N+ T
Sbjct: 230 EIKNGRLAMFSMLGFFIQAYVTGKGPVENLAAHLSDPFGNNLLT 273
>tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 63.5 bits (153), Expect = 5e-08
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDK 161
E++N R AM SM GF VQA VTGKGP+EN +H+ DPF AN F+Y K
Sbjct: 146 EIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFSYATK 193
>tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 63.5 bits (153), Expect = 5e-08
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDK 161
E++N R AM SM GF VQA VTGKGP+EN +H+ DPF AN F+Y K
Sbjct: 196 EIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFSYATK 243
>gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 63.2 bits (152), Expect = 7e-08
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVT 146
E++N R AM SMLGF +QA+VTG+GP+EN HL DPFG N+ T G + T
Sbjct: 228 EIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERT 280
>gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 63.2 bits (152), Expect = 7e-08
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDKGIKVT 146
E++N R AM SMLGF +QA+VTG+GP+EN HL DPFG N+ T G + T
Sbjct: 206 EIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERT 258
>prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM SM GF VQA VTGKGP+EN YDHL DP N + Y
Sbjct: 174 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 218
>gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM SM GF VQA VTGKGP+EN YDHL DP N + Y
Sbjct: 194 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 238
>sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP, partial [Pinus
sylvestris] gi|169376|gb|AAA33776.1| chlorophyll
a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM SM GF VQA VTGKGP+EN YDHL DP N + Y
Sbjct: 98 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 142
>sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
[Pinus thunbergii] gi|20935|emb|CAA31773.1|
chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM SM GF VQA VTGKGP+EN YDHL DP N + Y
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 258
>ref|XP_009397219.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Musa
acuminata subsp. malaccensis]
gi|102140026|gb|ABF70157.1| chlorophyll A-B binding
protein (CAB), putative [Musa acuminata]
Length = 264
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM SM GF VQA VTGKGP+EN YDHL DP N + Y
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 256
>emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 62.8 bits (151), Expect = 9e-08
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTY 170
E++N R AM SM GF VQA VTGKGP+EN YDHL DP N + Y
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAY 258
>ref|XP_011095262.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic
[Sesamum indicum]
Length = 265
Score = 62.4 bits (150), Expect = 1e-07
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = -3
Query: 304 EVRNARTAMLSMLGFAVQAWVTGKGPLENAYDHLKDPFGANVFTYGDK 161
E++N R AM SM GF VQA VTGKGPLEN DHL +P G N + Y K
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVGNNAWVYATK 260