BLASTX nr result
ID: Cinnamomum23_contig00040438
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00040438
(426 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009109230.1| photosystem II protein B [Corallorhiza wiste... 57 3e-16
gb|AAX09359.1| PsbB [Cleistes cipoana] 57 3e-16
gb|AAX09362.1| PsbB [Cleistes rosea] 57 3e-16
gb|AAX09360.1| PsbB [Cleistes sp. Chase O-430] 57 3e-16
gb|AAX09361.1| PsbB [Cleistes sp. Thomas 12975] 57 2e-15
gb|AAN32122.1| photosystem II CP47 protein, partial (chloroplast... 55 2e-15
gb|AEP25249.1| chlorophyll-A binding protein P5, partial (chloro... 58 3e-15
gb|ABZ79399.1| PsbB [Mirabilis jalapa] 58 3e-15
ref|YP_003587693.1| photosystem II 47 kDa protein [Anomochloa ma... 54 1e-14
ref|YP_008081910.1| photosystem II p680 chlorophyll A apoprotein... 54 2e-14
ref|YP_008081832.1| photosystem II p680 chlorophyll A apoprotein... 54 2e-14
ref|YP_008081676.1| photosystem II p680 chlorophyll A apoprotein... 54 2e-14
ref|YP_008081598.1| photosystem II p680 chlorophyll A apoprotein... 54 2e-14
ref|YP_009073039.1| photosystem II CP47 chlorophyll apoprotein [... 56 6e-14
gb|AAQ18535.1| photosystem II CP47 protein, partial (chloroplast... 53 6e-14
gb|AAX09351.1| PsbB [Eriaxis rigida] 52 1e-13
gb|AAS60034.1| photosystem II CP47 protein, partial (chloroplast... 55 4e-13
ref|YP_001876602.1| photosystem II CP47 chlorophyll apoprotein [... 50 2e-12
gb|AAG12399.1| photosystem II CP47 protein [Welwitschia mirabilis] 50 2e-12
gb|AAF72605.1| photosystem II apoprotein, partial (chloroplast) ... 50 2e-12
>ref|YP_009109230.1| photosystem II protein B [Corallorhiza wisteriana]
gi|704001586|gb|AIW51698.1| photosystem II protein B
[Corallorhiza wisteriana]
Length = 508
Score = 57.4 bits (137), Expect(2) = 3e-16
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
WSI+GG IT GIWSY+ VA AHI+FSG CLLAA+
Sbjct: 78 WSISGGTITNPGIWSYEGVAGAHILFSGLCLLAAI 112
Score = 53.9 bits (128), Expect(2) = 3e-16
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFCDERTGKPSLDLPKI 138
>gb|AAX09359.1| PsbB [Cleistes cipoana]
Length = 435
Score = 57.4 bits (137), Expect(2) = 3e-16
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG IT GIWSY+ VA AHIVFSG CLLAA+
Sbjct: 68 WNISGGTITNPGIWSYEGVAGAHIVFSGLCLLAAI 102
Score = 53.9 bits (128), Expect(2) = 3e-16
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 104 HWVYWDLEIFCDERTGKPSLDLPKI 128
>gb|AAX09362.1| PsbB [Cleistes rosea]
Length = 434
Score = 57.4 bits (137), Expect(2) = 3e-16
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG IT GIWSY+ VA AHIVFSG CLLAA+
Sbjct: 67 WNISGGTITNPGIWSYEGVAGAHIVFSGLCLLAAI 101
Score = 53.9 bits (128), Expect(2) = 3e-16
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 103 HWVYWDLEIFCDERTGKPSLDLPKI 127
>gb|AAX09360.1| PsbB [Cleistes sp. Chase O-430]
Length = 433
Score = 57.4 bits (137), Expect(2) = 3e-16
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG IT GIWSY+ VA AHIVFSG CLLAA+
Sbjct: 66 WNISGGTITNPGIWSYEGVAGAHIVFSGLCLLAAI 100
Score = 53.9 bits (128), Expect(2) = 3e-16
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 102 HWVYWDLEIFCDERTGKPSLDLPKI 126
>gb|AAX09361.1| PsbB [Cleistes sp. Thomas 12975]
Length = 429
Score = 57.4 bits (137), Expect(2) = 2e-15
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG IT GIWSY+ VA AHIVFSG CLLAA+
Sbjct: 62 WNISGGTITNPGIWSYEGVAGAHIVFSGLCLLAAI 96
Score = 51.6 bits (122), Expect(2) = 2e-15
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLP I
Sbjct: 98 HWVYWDLEIFCDERTGKPSLDLPXI 122
>gb|AAN32122.1| photosystem II CP47 protein, partial (chloroplast) [Japonolirion
osense]
Length = 498
Score = 54.7 bits (130), Expect(2) = 2e-15
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
WSI+GG IT GIWSY+ VA AHIVF G C LAA+
Sbjct: 68 WSISGGTITNPGIWSYEGVAGAHIVFXGLCXLAAI 102
Score = 53.9 bits (128), Expect(2) = 2e-15
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 104 HWVYWDLEIFCDERTGKPSLDLPKI 128
>gb|AEP25249.1| chlorophyll-A binding protein P5, partial (chloroplast) [Mirabilis
jalapa]
Length = 469
Score = 57.8 bits (138), Expect(2) = 3e-15
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+ITGG IT GIWSY+ VA AHIVFSG C+LAA+
Sbjct: 39 WNITGGTITDPGIWSYEGVAGAHIVFSGLCILAAI 73
Score = 50.1 bits (118), Expect(2) = 3e-15
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIF DE TGKPSLDLPKI
Sbjct: 75 HWVYWDLEIFSDERTGKPSLDLPKI 99
>gb|ABZ79399.1| PsbB [Mirabilis jalapa]
Length = 391
Score = 57.8 bits (138), Expect(2) = 3e-15
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+ITGG IT GIWSY+ VA AHIVFSG C+LAA+
Sbjct: 29 WNITGGTITDPGIWSYEGVAGAHIVFSGLCILAAI 63
Score = 50.1 bits (118), Expect(2) = 3e-15
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIF DE TGKPSLDLPKI
Sbjct: 65 HWVYWDLEIFSDERTGKPSLDLPKI 89
>ref|YP_003587693.1| photosystem II 47 kDa protein [Anomochloa marantoidea]
gi|251765277|gb|ACT15431.1| photosystem II 47 kDa
protein [Anomochloa marantoidea]
Length = 508
Score = 53.9 bits (128), Expect(2) = 1e-14
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFCDERTGKPSLDLPKI 138
Score = 52.0 bits (123), Expect(2) = 1e-14
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
WSI+GG +T GIWSY+ VA AHIVFSG LAA+
Sbjct: 78 WSISGGTVTNPGIWSYEGVAGAHIVFSGCVFLAAI 112
>ref|YP_008081910.1| photosystem II p680 chlorophyll A apoprotein (chloroplast)
[Cymbidium mannii] gi|482662572|gb|AGK25794.1|
photosystem II p680 chlorophyll A apoprotein
(chloroplast) [Cymbidium mannii]
Length = 508
Score = 53.9 bits (128), Expect(2) = 2e-14
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFCDERTGKPSLDLPKI 138
Score = 51.2 bits (121), Expect(2) = 2e-14
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG I GIWSY+ VA AHI+FSG C L+A+
Sbjct: 78 WNISGGTIMNPGIWSYEGVAGAHILFSGLCFLSAI 112
>ref|YP_008081832.1| photosystem II p680 chlorophyll A apoprotein (chloroplast)
[Cymbidium tracyanum] gi|482662414|gb|AGK25638.1|
photosystem II p680 chlorophyll A apoprotein
(chloroplast) [Cymbidium tracyanum]
Length = 508
Score = 53.9 bits (128), Expect(2) = 2e-14
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFCDERTGKPSLDLPKI 138
Score = 51.2 bits (121), Expect(2) = 2e-14
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG I GIWSY+ VA AHI+FSG C L+A+
Sbjct: 78 WNISGGTIMNPGIWSYEGVAGAHILFSGLCFLSAI 112
>ref|YP_008081676.1| photosystem II p680 chlorophyll A apoprotein (chloroplast)
[Cymbidium sinense] gi|512721409|ref|YP_008081754.1|
photosystem II p680 chlorophyll A apoprotein
(chloroplast) [Cymbidium tortisepalum]
gi|482662098|gb|AGK25326.1| photosystem II p680
chlorophyll A apoprotein (chloroplast) [Cymbidium
sinense] gi|482662177|gb|AGK25404.1| photosystem II p680
chlorophyll A apoprotein (chloroplast) [Cymbidium
tortisepalum] gi|482662256|gb|AGK25482.1| photosystem II
p680 chlorophyll A apoprotein (chloroplast) [Cymbidium
tortisepalum] gi|482662335|gb|AGK25560.1| photosystem II
p680 chlorophyll A apoprotein (chloroplast) [Cymbidium
mannii] gi|482662493|gb|AGK25716.1| photosystem II p680
chlorophyll A apoprotein (chloroplast) [Cymbidium
tortisepalum]
Length = 508
Score = 53.9 bits (128), Expect(2) = 2e-14
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFCDERTGKPSLDLPKI 138
Score = 51.2 bits (121), Expect(2) = 2e-14
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG I GIWSY+ VA AHI+FSG C L+A+
Sbjct: 78 WNISGGTIMNPGIWSYEGVAGAHILFSGLCFLSAI 112
>ref|YP_008081598.1| photosystem II p680 chlorophyll A apoprotein (chloroplast)
[Cymbidium aloifolium] gi|482662019|gb|AGK25248.1|
photosystem II p680 chlorophyll A apoprotein
(chloroplast) [Cymbidium aloifolium]
Length = 508
Score = 53.9 bits (128), Expect(2) = 2e-14
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIFCDE TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFCDERTGKPSLDLPKI 138
Score = 51.2 bits (121), Expect(2) = 2e-14
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
W+I+GG I GIWSY+ VA AHI+FSG C L+A+
Sbjct: 78 WNISGGTIMNPGIWSYEGVAGAHILFSGLCFLSAI 112
>ref|YP_009073039.1| photosystem II CP47 chlorophyll apoprotein [Elytrophorus spicatus]
gi|686986048|gb|AIQ79566.1| photosystem II CP47
chlorophyll apoprotein (plastid) [Elytrophorus spicatus]
Length = 508
Score = 55.8 bits (133), Expect(2) = 6e-14
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
WSI+GG IT GIWSY+ VA AHIVFSG C L+A+
Sbjct: 78 WSISGGTITNPGIWSYEGVAGAHIVFSGLCFLSAI 112
Score = 47.8 bits (112), Expect(2) = 6e-14
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DL IF DE TGKPSLDLPKI
Sbjct: 114 HWVYWDLAIFIDERTGKPSLDLPKI 138
>gb|AAQ18535.1| photosystem II CP47 protein, partial (chloroplast) [Dioon purpusii]
Length = 498
Score = 53.1 bits (126), Expect(2) = 6e-14
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
WSITG +T GIWSY+ VA AHIVFSG C AA+
Sbjct: 68 WSITGETVTNPGIWSYEGVAGAHIVFSGLCFXAAI 102
Score = 50.4 bits (119), Expect(2) = 6e-14
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DL+IFCDE GKPSLDLPKI
Sbjct: 104 HWVYWDLDIFCDERXGKPSLDLPKI 128
>gb|AAX09351.1| PsbB [Eriaxis rigida]
Length = 431
Score = 51.6 bits (122), Expect(2) = 1e-13
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAAM 107
WSI+G IT GIWSY+ VA AHIVFSG C AA+
Sbjct: 64 WSISGRTITNSGIWSYEGVAGAHIVFSGLCXXAAI 98
Score = 50.8 bits (120), Expect(2) = 1e-13
Identities = 22/24 (91%), Positives = 22/24 (91%)
Frame = +1
Query: 115 WVY*DLEIFCDEHTGKPSLDLPKI 186
WVY DLEIFCDE TGKPSLDLPKI
Sbjct: 101 WVYWDLEIFCDERTGKPSLDLPKI 124
>gb|AAS60034.1| photosystem II CP47 protein, partial (chloroplast) [Trillium
grandiflorum]
Length = 497
Score = 54.7 bits (130), Expect(2) = 4e-13
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAA 104
WSI+GG IT GIWSY+ VA AHI FSG C LAA
Sbjct: 67 WSISGGTITNPGIWSYEGVAGAHIFFSGLCFLAA 100
Score = 46.2 bits (108), Expect(2) = 4e-13
Identities = 24/37 (64%), Positives = 24/37 (64%)
Frame = +1
Query: 76 CFLAFAC*QL*SHWVY*DLEIFCDEHTGKPSLDLPKI 186
CFLA HWVY DL IF D TGKPSLDLPKI
Sbjct: 96 CFLAAXW-----HWVYWDLAIFSDXRTGKPSLDLPKI 127
>ref|YP_001876602.1| photosystem II CP47 chlorophyll apoprotein [Welwitschia mirabilis]
gi|221272401|sp|B2Y1Y5.1|PSBB_WELMI RecName:
Full=Photosystem II CP47 reaction center protein;
AltName: Full=PSII 47 kDa protein; AltName: Full=Protein
CP-47 gi|163311657|gb|ABY26815.1| photosystem II CP47
chlorophyll apoprotein [Welwitschia mirabilis]
gi|220983434|dbj|BAH11203.1| photosystem II 47 kDa
protein (chloroplast) [Welwitschia mirabilis]
Length = 508
Score = 50.4 bits (119), Expect(2) = 2e-12
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAA 104
WSITG I G+WSY+ VA AHIVFSG C L+A
Sbjct: 78 WSITGEPIANPGLWSYEGVAGAHIVFSGLCFLSA 111
Score = 47.8 bits (112), Expect(2) = 2e-12
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIF D TGKPSLDLPKI
Sbjct: 114 HWVYWDLEIFSDPRTGKPSLDLPKI 138
>gb|AAG12399.1| photosystem II CP47 protein [Welwitschia mirabilis]
Length = 485
Score = 50.4 bits (119), Expect(2) = 2e-12
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAA 104
WSITG I G+WSY+ VA AHIVFSG C L+A
Sbjct: 55 WSITGEPIANPGLWSYEGVAGAHIVFSGLCFLSA 88
Score = 47.8 bits (112), Expect(2) = 2e-12
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIF D TGKPSLDLPKI
Sbjct: 91 HWVYWDLEIFSDPRTGKPSLDLPKI 115
>gb|AAF72605.1| photosystem II apoprotein, partial (chloroplast) [Welwitschia
mirabilis]
Length = 462
Score = 50.4 bits (119), Expect(2) = 2e-12
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +3
Query: 3 WSITGGIITKVGIWSYKDVASAHIVFSGFCLLAA 104
WSITG I G+WSY+ VA AHIVFSG C L+A
Sbjct: 69 WSITGEPIANPGLWSYEGVAGAHIVFSGLCFLSA 102
Score = 47.8 bits (112), Expect(2) = 2e-12
Identities = 21/25 (84%), Positives = 21/25 (84%)
Frame = +1
Query: 112 HWVY*DLEIFCDEHTGKPSLDLPKI 186
HWVY DLEIF D TGKPSLDLPKI
Sbjct: 105 HWVYWDLEIFSDPRTGKPSLDLPKI 129