BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00032211
         (824 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADD31165.1| RNA polymerase beta' subunit protein (chloroplast...    79   5e-12
ref|YP_009053999.1| RNA polymerase beta' subunit (chloroplast) [...    78   6e-12
ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina...    78   6e-12
emb|CAB56767.1| RNA polymerase [Arabidopsis thaliana]                  78   8e-12
gb|AKM97909.1| rpoC1 (chloroplast) [Brassica oleracea var. capit...    78   8e-12
ref|YP_009131137.1| RNA polymerase beta (chloroplast) [Erodium a...    78   8e-12
ref|YP_009121079.1| RNA polymerase beta (plastid) [Cardamine res...    78   8e-12
ref|YP_009120994.1| RNA polymerase beta (plastid) [Cardamine imp...    78   8e-12
ref|YP_009121164.1| RNA polymerase beta (chloroplast) [Panax not...    78   8e-12
ref|YP_009115886.1| RNA polymerase beta [Scrophularia takesimens...    78   8e-12
ref|YP_009111569.1| RNA polymerase beta [Erodium gruinum] gi|577...    78   8e-12
emb|CDX77005.1| BnaC04g38000D [Brassica napus]                         78   8e-12
emb|CDY21192.1| BnaA01g34230D [Brassica napus]                         78   8e-12
gb|AIK28995.1| RNA polymerase beta' subunit (chloroplast) [Brass...    78   8e-12
gb|KFK40391.1| hypothetical protein AALP_AA3G367400 [Arabis alpina]    78   8e-12
ref|YP_009046905.1| RNA polymerase beta' subunit (chloroplast) [...    78   8e-12
ref|YP_005089943.1| rpoC1 gene product (chloroplast) [Brassica n...    78   8e-12
ref|YP_009138249.1| RNA polymerase beta (chloroplast) [Erodium c...    78   8e-12
ref|YP_009000323.1| rpoC1 protein (chloroplast) [Arabis alpina] ...    78   8e-12
gb|AGW04355.1| RNA polymerase beta' subunit [Araujia sericifera]       78   8e-12

>gb|ADD31165.1| RNA polymerase beta' subunit protein (chloroplast) [Ilex cornuta]
          Length = 694

 Score = 78.6 bits (192), Expect = 5e-12
 Identities = 38/45 (84%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNLVS  IGDPISVPTQD+LIGLYV TSG R+GICVNRY
Sbjct: 520 LLMFSHMNLVSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRY 564


>ref|YP_009053999.1| RNA polymerase beta' subunit (chloroplast) [Hanabusaya asiatica]
           gi|630056890|gb|AHY94455.1| RNA polymerase beta' subunit
           (chloroplast) [Hanabusaya asiatica]
          Length = 689

 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 38/51 (74%), Positives = 42/51 (82%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRYKLDHAR 517
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSG ++GICVNRY   H R
Sbjct: 518 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNQRGICVNRYNPCHRR 568


>ref|YP_005296091.1| rpoC1 gene product (chloroplast) [Pentactina rupicola]
           gi|371532614|gb|AEX31724.1| RNA polymerase beta I
           subunit (chloroplast) [Pentactina rupicola]
          Length = 682

 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 38/51 (74%), Positives = 41/51 (80%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRYKLDHAR 517
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSG R+GIC NRY   H R
Sbjct: 511 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCHRR 561


>emb|CAB56767.1| RNA polymerase [Arabidopsis thaliana]
          Length = 155

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 16  LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 60


>gb|AKM97909.1| rpoC1 (chloroplast) [Brassica oleracea var. capitata]
          Length = 681

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 512 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 556


>ref|YP_009131137.1| RNA polymerase beta (chloroplast) [Erodium absinthoides]
           gi|640774551|gb|AIA26350.1| RNA polymerase beta
           (chloroplast) [Erodium absinthoides]
          Length = 700

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRYKLDHARIGST 505
           L MFSHMNL++  IGDPI VPTQD+LIGLY+ TSG R+G+CVNRY L + R G T
Sbjct: 529 LLMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNHRKGQT 583


>ref|YP_009121079.1| RNA polymerase beta (plastid) [Cardamine resedifolia]
           gi|597441221|gb|AHN07246.1| RNA polymerase beta
           [Cardamine resedifolia]
          Length = 680

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 511 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 555


>ref|YP_009120994.1| RNA polymerase beta (plastid) [Cardamine impatiens]
           gi|597441135|gb|AHN07161.1| RNA polymerase beta
           [Cardamine impatiens]
          Length = 680

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 511 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 555


>ref|YP_009121164.1| RNA polymerase beta (chloroplast) [Panax notoginseng]
           gi|638920723|gb|AIA24318.1| RNA polymerase beta
           (chloroplast) [Panax notoginseng]
           gi|818214032|gb|AKG26591.1| RNA polymerase beta' subunit
           (chloroplast) [Panax notoginseng]
          Length = 689

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSG+R+GICVNRY
Sbjct: 518 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGSRRGICVNRY 562


>ref|YP_009115886.1| RNA polymerase beta [Scrophularia takesimensis]
           gi|744673730|gb|AJD00715.1| RNA polymerase beta
           [Scrophularia takesimensis]
          Length = 684

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSG+R+GICVNRY
Sbjct: 515 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGSRRGICVNRY 559


>ref|YP_009111569.1| RNA polymerase beta [Erodium gruinum] gi|577027690|gb|AHH80580.1|
           RNA polymerase beta [Erodium gruinum]
           gi|817499774|gb|AKF43434.1| RNA polymerase beta' subunit
           (plastid) [Erodium gruinum]
          Length = 697

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRYKLDHARIGST 505
           L MFSHMNL++  IGDPI VPTQD+LIGLY+ TSG R+G+CVNRY L + R G T
Sbjct: 526 LLMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNHRKGQT 580


>emb|CDX77005.1| BnaC04g38000D [Brassica napus]
          Length = 359

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 190 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 234


>emb|CDY21192.1| BnaA01g34230D [Brassica napus]
          Length = 552

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 383 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 427


>gb|AIK28995.1| RNA polymerase beta' subunit (chloroplast) [Brassica napus]
           gi|730042950|gb|AIZ06071.1| RNA polymerase beta' subunit
           (chloroplast) [Brassica napus]
          Length = 680

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 511 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 555


>gb|KFK40391.1| hypothetical protein AALP_AA3G367400 [Arabis alpina]
          Length = 552

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 383 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 427


>ref|YP_009046905.1| RNA polymerase beta' subunit (chloroplast) [Raphanus sativus]
           gi|662020167|gb|AIE42457.1| RNA polymerase beta' subunit
           (chloroplast) [Raphanus sativus]
          Length = 680

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 511 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 555


>ref|YP_005089943.1| rpoC1 gene product (chloroplast) [Brassica napus]
           gi|262400794|gb|ACY66283.1| RNA polymerase beta' subunit
           [Brassica napus] gi|808178768|gb|AKD00080.1| RNA
           polymerase beta' subunit (plastid) [Brassica napus]
          Length = 680

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 511 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 555


>ref|YP_009138249.1| RNA polymerase beta (chloroplast) [Erodium chrysanthum]
           gi|197131654|gb|ACH47345.1| RNA polymerase beta [Erodium
           chrysanthum] gi|642988081|gb|AIA81382.1| RNA polymerase
           beta (chloroplast) [Erodium chrysanthum]
           gi|817499770|gb|AKF43432.1| RNA polymerase beta' subunit
           (plastid) [Erodium chrysanthum]
          Length = 707

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRYKLDHARIGST 505
           L MFSHMNL++  IGDPI VPTQD+LIGLY+ TSG R+G+CVNRY L + R G T
Sbjct: 536 LLMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNHRKGQT 590


>ref|YP_009000323.1| rpoC1 protein (chloroplast) [Arabis alpina]
           gi|571025795|emb|CCW28170.1| rpoC1 protein (chloroplast)
           [Arabis alpina]
          Length = 684

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+LIGLYV TSGTR+GIC NRY
Sbjct: 515 LLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRY 559


>gb|AGW04355.1| RNA polymerase beta' subunit [Araujia sericifera]
          Length = 686

 Score = 77.8 bits (190), Expect = 8e-12
 Identities = 37/45 (82%), Positives = 40/45 (88%)
 Frame = -3

Query: 669 LCMFSHMNLVSVPIGDPISVPTQDVLIGLYV*TSGTRQGICVNRY 535
           L MFSHMNL+S  IGDPISVPTQD+L+GLYV TSG RQGICVNRY
Sbjct: 518 LLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRQGICVNRY 562