BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00031934
         (817 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010271260.1| PREDICTED: RNA pseudouridine synthase 4, mit...   337   4e-90
ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mit...   337   4e-90
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   337   5e-90
ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mit...   336   1e-89
ref|XP_011001179.1| PREDICTED: RNA pseudouridine synthase 4, mit...   332   2e-88
ref|XP_011001172.1| PREDICTED: RNA pseudouridine synthase 4, mit...   327   4e-87
ref|XP_008236380.1| PREDICTED: RNA pseudouridine synthase 4, mit...   322   2e-85
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   322   2e-85
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   322   2e-85
ref|XP_012075891.1| PREDICTED: RNA pseudouridine synthase 4, mit...   321   4e-85
ref|XP_010096290.1| RNA pseudourine synthase 4 [Morus notabilis]...   314   4e-83
ref|XP_012450617.1| PREDICTED: RNA pseudouridine synthase 4, mit...   311   3e-82
ref|XP_009341344.1| PREDICTED: RNA pseudouridine synthase 4, mit...   311   3e-82
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   310   7e-82
gb|KHG26351.1| hypothetical protein F383_00972 [Gossypium arboreum]   309   1e-81
emb|CDO97224.1| unnamed protein product [Coffea canephora]            309   2e-81
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   306   1e-80
ref|XP_009805029.1| PREDICTED: RNA pseudouridine synthase 4, mit...   305   3e-80
ref|XP_009805027.1| PREDICTED: RNA pseudouridine synthase 4, mit...   305   3e-80
ref|XP_009629272.1| PREDICTED: RNA pseudouridine synthase 4, mit...   304   4e-80

>ref|XP_010271260.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X3 [Nelumbo nucifera]
          Length = 369

 Score =  337 bits (865), Expect = 4e-90
 Identities = 179/263 (68%), Positives = 206/263 (78%), Gaps = 3/263 (1%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXA---LKWVLQCCPHLPRSLVQ 610
           KG+WL LPP SSSI+   V KA+S R             +   LKWVL+CCPHLPRSLVQ
Sbjct: 52  KGRWLILPPVSSSIDAVSVVKALSSRPSDLKGETTNTTTSTTALKWVLRCCPHLPRSLVQ 111

Query: 609 KLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKND 430
           KLFRLRQVRRE     ++  +    Q+++++RV+AK+VMNLGDRIFLP +V+ELPS   +
Sbjct: 112 KLFRLRQVRRESCDSMSSLDIGNHAQEHRLKRVTAKEVMNLGDRIFLPITVQELPSETQE 171

Query: 429 QCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPR 250
             CNEDEI Y+ SLELYKDPAII VNKP GMPVQGGIGI KSLDELAA  LRYD SE PR
Sbjct: 172 HYCNEDEISYICSLELYKDPAIIAVNKPHGMPVQGGIGIKKSLDELAATYLRYDYSEPPR 231

Query: 249 LVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTP 70
           LVHRLDRD SG+LVMGRTQTSAT+LHSIFREKTFGAS +  DN + ILQR+YWALVIGTP
Sbjct: 232 LVHRLDRDSSGILVMGRTQTSATILHSIFREKTFGASIN--DNDKMILQRRYWALVIGTP 289

Query: 69  RRAKGLISAPLAKVVMDNGKSER 1
           +RA GLISAPL KVV+D+GKSER
Sbjct: 290 KRANGLISAPLGKVVLDDGKSER 312


>ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Nelumbo nucifera]
          Length = 472

 Score =  337 bits (865), Expect = 4e-90
 Identities = 179/263 (68%), Positives = 206/263 (78%), Gaps = 3/263 (1%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXA---LKWVLQCCPHLPRSLVQ 610
           KG+WL LPP SSSI+   V KA+S R             +   LKWVL+CCPHLPRSLVQ
Sbjct: 52  KGRWLILPPVSSSIDAVSVVKALSSRPSDLKGETTNTTTSTTALKWVLRCCPHLPRSLVQ 111

Query: 609 KLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKND 430
           KLFRLRQVRRE     ++  +    Q+++++RV+AK+VMNLGDRIFLP +V+ELPS   +
Sbjct: 112 KLFRLRQVRRESCDSMSSLDIGNHAQEHRLKRVTAKEVMNLGDRIFLPITVQELPSETQE 171

Query: 429 QCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPR 250
             CNEDEI Y+ SLELYKDPAII VNKP GMPVQGGIGI KSLDELAA  LRYD SE PR
Sbjct: 172 HYCNEDEISYICSLELYKDPAIIAVNKPHGMPVQGGIGIKKSLDELAATYLRYDYSEPPR 231

Query: 249 LVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTP 70
           LVHRLDRD SG+LVMGRTQTSAT+LHSIFREKTFGAS +  DN + ILQR+YWALVIGTP
Sbjct: 232 LVHRLDRDSSGILVMGRTQTSATILHSIFREKTFGASIN--DNDKMILQRRYWALVIGTP 289

Query: 69  RRAKGLISAPLAKVVMDNGKSER 1
           +RA GLISAPL KVV+D+GKSER
Sbjct: 290 KRANGLISAPLGKVVLDDGKSER 312


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  337 bits (864), Expect = 5e-90
 Identities = 176/261 (67%), Positives = 207/261 (79%), Gaps = 1/261 (0%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           +G+W  LPPY+S+IN S++G A+S R             ALKWVL+CCP LPR+LVQKLF
Sbjct: 55  RGKWFTLPPYTSTINGSVLGIALSAR---IPAKSASETTALKWVLRCCPELPRNLVQKLF 111

Query: 600 RLRQVRREVASPTAASC-LEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKNDQC 424
           RLRQVRRE  SP   SC L  QGQ+++++RV+AKD M++GDRIFLP SVK LP+ K D  
Sbjct: 112 RLRQVRRE--SPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQDCH 169

Query: 423 CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLV 244
           CNE+EI ++  LELYKD AIIVVNKPPGMPVQGGIGI +SLDEL+A+    D SE PRLV
Sbjct: 170 CNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLV 229

Query: 243 HRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPRR 64
           HRLDRDCSG+LVMGRTQTSATVLH+IFREKT  AS+  + N  RILQRKYWALVIG+PRR
Sbjct: 230 HRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRR 289

Query: 63  AKGLISAPLAKVVMDNGKSER 1
            KGLISAPL KVV+DNGKS+R
Sbjct: 290 PKGLISAPLGKVVVDNGKSDR 310


>ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Vitis vinifera] gi|296090438|emb|CBI40257.3| unnamed
           protein product [Vitis vinifera]
          Length = 476

 Score =  336 bits (861), Expect = 1e-89
 Identities = 170/263 (64%), Positives = 212/263 (80%), Gaps = 3/263 (1%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAIS--RRSL-VXXXXXXXXXXALKWVLQCCPHLPRSLVQ 610
           KG+W  LP ++  ++ S +GK +S  R  L            ALKWV++CCP LPRSLVQ
Sbjct: 53  KGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQ 112

Query: 609 KLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKND 430
           KLFRLRQVRRE  +    S + +Q Q+++++RV+AKD+MNLGD+I LP +V+E PS K++
Sbjct: 113 KLFRLRQVRRESYN-MITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFPSEKHE 171

Query: 429 QCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPR 250
             CN++EI ++H+LELYKDPAIIVVNKPPG+PVQGGIGI +SLDELAA  LRYDCSE PR
Sbjct: 172 YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPR 231

Query: 249 LVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTP 70
           LVHRLDRD SG+L+MGRTQTSAT+LHSIFREKTFGAS++ ID  +RILQR+YWALVIG+P
Sbjct: 232 LVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSP 291

Query: 69  RRAKGLISAPLAKVVMDNGKSER 1
           RR +GLISAPL KVV+D+GKSER
Sbjct: 292 RRPRGLISAPLGKVVVDDGKSER 314


>ref|XP_011001179.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Populus euphratica]
          Length = 471

 Score =  332 bits (850), Expect = 2e-88
 Identities = 173/261 (66%), Positives = 206/261 (78%), Gaps = 1/261 (0%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           +G+W  LPPY+S+IN S++GKA+S R             ALKWVL+CCP LPR+LVQKLF
Sbjct: 55  RGKWFTLPPYTSTINGSVLGKALSTR---IPAKSASETTALKWVLRCCPELPRNLVQKLF 111

Query: 600 RLRQVRREVASPTAASC-LEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKNDQC 424
           RLRQVRRE  S    SC L  QGQ+++++RV+AKD M++GDRIFLP SVK LP+ K D  
Sbjct: 112 RLRQVRRE--SSVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKALPAEKQDCH 169

Query: 423 CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLV 244
           C+E+E  ++  LELYKD AIIVVNKPPGMPVQGGIGI +SLDEL+A+    D SE PRLV
Sbjct: 170 CSEEETNFIRGLELYKDDAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLV 229

Query: 243 HRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPRR 64
           HRLDRDCSG+LVMGRTQTSATVLH+IFREKT  AS+  + +  RILQRKYWALVIG+PRR
Sbjct: 230 HRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGDKRRILQRKYWALVIGSPRR 289

Query: 63  AKGLISAPLAKVVMDNGKSER 1
            KGLISAPL KVV+DNGKS+R
Sbjct: 290 QKGLISAPLGKVVVDNGKSDR 310


>ref|XP_011001172.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Populus euphratica]
          Length = 475

 Score =  327 bits (839), Expect = 4e-87
 Identities = 174/265 (65%), Positives = 207/265 (78%), Gaps = 5/265 (1%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           +G+W  LPPY+S+IN S++GKA+S R             ALKWVL+CCP LPR+LVQKLF
Sbjct: 55  RGKWFTLPPYTSTINGSVLGKALSTR---IPAKSASETTALKWVLRCCPELPRNLVQKLF 111

Query: 600 RLRQVRREVASPTAASC-LEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKNDQC 424
           RLRQVRRE  S    SC L  QGQ+++++RV+AKD M++GDRIFLP SVK LP+ K D  
Sbjct: 112 RLRQVRRE--SSVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKALPAEKQDCH 169

Query: 423 CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLV 244
           C+E+E  ++  LELYKD AIIVVNKPPGMPVQGGIGI +SLDEL+A+    D SE PRLV
Sbjct: 170 CSEEETNFIRGLELYKDDAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLV 229

Query: 243 HRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGA----SSSRIDNAERILQRKYWALVIG 76
           HRLDRDCSG+LVMGRTQTSATVLH+IFREKT  A    SS+ + +  RILQRKYWALVIG
Sbjct: 230 HRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDVSSTDVGDKRRILQRKYWALVIG 289

Query: 75  TPRRAKGLISAPLAKVVMDNGKSER 1
           +PRR KGLISAPL KVV+DNGKS+R
Sbjct: 290 SPRRQKGLISAPLGKVVVDNGKSDR 314


>ref|XP_008236380.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Prunus
           mume]
          Length = 483

 Score =  322 bits (825), Expect = 2e-85
 Identities = 170/274 (62%), Positives = 207/274 (75%), Gaps = 16/274 (5%)
 Frame = -2

Query: 774 QWLKLPPYSSSINPSLVGKAISRR---------SLVXXXXXXXXXXALKWVLQCCPHLPR 622
           +W  LPP++++IN S +GK +SR                       ALKWV +CCP LPR
Sbjct: 49  KWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATTSTTSTTTTALKWVTRCCPELPR 108

Query: 621 SLVQKLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPS 442
           SLVQKLFRLRQVRRE +     S   ++  +  ++RV+AKD MN+GDRI LP SV+E P+
Sbjct: 109 SLVQKLFRLRQVRRE-SCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPISVQEFPN 167

Query: 441 MKND------QC-CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAA 283
            K +      +C C+E+E+ ++ SLELYKDPAIIV+NKPPGMPVQGGIGI +SLDELAAA
Sbjct: 168 DKQELPNDKKECHCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAA 227

Query: 282 SLRYDCSENPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQ 103
            L YD SE+PRLVHRLDRD SG+LVMGRTQTSATVLHSIFREKTFGAS+  ID+A+RILQ
Sbjct: 228 CLSYDFSESPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDVIDDAKRILQ 287

Query: 102 RKYWALVIGTPRRAKGLISAPLAKVVMDNGKSER 1
           R+YWALVIG+PR+ KGLISAPL KVV+DNGKS+R
Sbjct: 288 RRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDR 321


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395210|gb|EMJ01009.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  322 bits (825), Expect = 2e-85
 Identities = 170/274 (62%), Positives = 206/274 (75%), Gaps = 16/274 (5%)
 Frame = -2

Query: 774 QWLKLPPYSSSINPSLVGKAISRR---------SLVXXXXXXXXXXALKWVLQCCPHLPR 622
           +W  LPP++++IN S +GK +SR                       ALKWV +CCP LPR
Sbjct: 49  KWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPR 108

Query: 621 SLVQKLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPS 442
           SLVQKLFRLRQVRRE +     S   ++  +  ++RV+AKD MN+GDRI LP SV+E P+
Sbjct: 109 SLVQKLFRLRQVRRE-SCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPN 167

Query: 441 MKND------QC-CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAA 283
            K +      +C C+E+E+ ++ SLELYKDPAIIV+NKPPGMPVQGGIGI +SLDELAAA
Sbjct: 168 DKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAA 227

Query: 282 SLRYDCSENPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQ 103
            L YD SE PRLVHRLDRD SG+LVMGRTQTSATVLHSIFREKTFGAS+  ID+A+RILQ
Sbjct: 228 CLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQ 287

Query: 102 RKYWALVIGTPRRAKGLISAPLAKVVMDNGKSER 1
           R+YWALVIG+PR+ KGLISAPL KVV+DNGKS+R
Sbjct: 288 RRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDR 321


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395209|gb|EMJ01008.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  322 bits (825), Expect = 2e-85
 Identities = 170/274 (62%), Positives = 206/274 (75%), Gaps = 16/274 (5%)
 Frame = -2

Query: 774 QWLKLPPYSSSINPSLVGKAISRR---------SLVXXXXXXXXXXALKWVLQCCPHLPR 622
           +W  LPP++++IN S +GK +SR                       ALKWV +CCP LPR
Sbjct: 49  KWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPR 108

Query: 621 SLVQKLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPS 442
           SLVQKLFRLRQVRRE +     S   ++  +  ++RV+AKD MN+GDRI LP SV+E P+
Sbjct: 109 SLVQKLFRLRQVRRE-SCDMECSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPN 167

Query: 441 MKND------QC-CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAA 283
            K +      +C C+E+E+ ++ SLELYKDPAIIV+NKPPGMPVQGGIGI +SLDELAAA
Sbjct: 168 DKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAA 227

Query: 282 SLRYDCSENPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQ 103
            L YD SE PRLVHRLDRD SG+LVMGRTQTSATVLHSIFREKTFGAS+  ID+A+RILQ
Sbjct: 228 CLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQ 287

Query: 102 RKYWALVIGTPRRAKGLISAPLAKVVMDNGKSER 1
           R+YWALVIG+PR+ KGLISAPL KVV+DNGKS+R
Sbjct: 288 RRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDR 321


>ref|XP_012075891.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha
           curcas] gi|802540331|ref|XP_012075896.1| PREDICTED: RNA
           pseudouridine synthase 4, mitochondrial [Jatropha
           curcas] gi|802540333|ref|XP_012075899.1| PREDICTED: RNA
           pseudouridine synthase 4, mitochondrial [Jatropha
           curcas] gi|802540335|ref|XP_012075905.1| PREDICTED: RNA
           pseudouridine synthase 4, mitochondrial [Jatropha
           curcas] gi|643740231|gb|KDP45903.1| hypothetical protein
           JCGZ_15463 [Jatropha curcas]
          Length = 470

 Score =  321 bits (822), Expect = 4e-85
 Identities = 167/262 (63%), Positives = 202/262 (77%)
 Frame = -2

Query: 786 KGKGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQK 607
           K KG+W  LPPY+S+I+ S +GKA+S   +           ALKWVL+CCP LPRSLVQK
Sbjct: 54  KKKGKWFTLPPYTSTISGSALGKALS---VSISEKLANETTALKWVLRCCPELPRSLVQK 110

Query: 606 LFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKNDQ 427
           LFRLRQVRRE      +S L  Q ++ K++RV+AKD+M++GDRIFLP +V+ LPS K   
Sbjct: 111 LFRLRQVRRE------SSNLRDQAEEQKVKRVAAKDLMSIGDRIFLPITVQALPSEKQQN 164

Query: 426 CCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRL 247
             N++ + ++ SLELYKD  IIVVNKPPG+PVQGGIGI +SLDELAA+ L YD SE PRL
Sbjct: 165 VYNQEAVNFIRSLELYKDDIIIVVNKPPGIPVQGGIGIKRSLDELAASCLSYDYSEPPRL 224

Query: 246 VHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPR 67
           VHRLDRD SG+LVMGRTQTS TVLHS+FREKTF AS+  I +  RILQRKYWALVIG+PR
Sbjct: 225 VHRLDRDSSGILVMGRTQTSTTVLHSVFREKTFAASNDDIGDRRRILQRKYWALVIGSPR 284

Query: 66  RAKGLISAPLAKVVMDNGKSER 1
             KGLISAPL KV++DNGKS+R
Sbjct: 285 CQKGLISAPLGKVLVDNGKSDR 306


>ref|XP_010096290.1| RNA pseudourine synthase 4 [Morus notabilis]
           gi|587874547|gb|EXB63685.1| RNA pseudourine synthase 4
           [Morus notabilis]
          Length = 470

 Score =  314 bits (805), Expect = 4e-83
 Identities = 162/266 (60%), Positives = 200/266 (75%), Gaps = 4/266 (1%)
 Frame = -2

Query: 786 KGKGQWLKLPPYSSSINPSLVGKAISRRS----LVXXXXXXXXXXALKWVLQCCPHLPRS 619
           K   +W  LPP++++++ +++GKAI+        V          ALKWV++CCP LPRS
Sbjct: 44  KNGTKWFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRS 103

Query: 618 LVQKLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSM 439
           LVQKLFRLRQVRRE  +    +  +  G+  ++RRVSAKD +NLGD+IFLP SVKELP  
Sbjct: 104 LVQKLFRLRQVRRESFNVEDCNAGDQLGKP-RLRRVSAKDSLNLGDKIFLPISVKELPVE 162

Query: 438 KNDQCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSE 259
           K +  CNE+E+ ++ SLELYKDPAI+VVNKPPG+PVQGGIGI  SLD+LA   L YD +E
Sbjct: 163 KKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTE 222

Query: 258 NPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVI 79
            PRLVHRLDRDCSG+LVMGRTQTSATVLHSIFREKTFGAS+      + +LQR+YWA VI
Sbjct: 223 PPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVI 282

Query: 78  GTPRRAKGLISAPLAKVVMDNGKSER 1
           G+PR   GLISAPL KVV+DNGKS+R
Sbjct: 283 GSPRHPNGLISAPLRKVVLDNGKSDR 308


>ref|XP_012450617.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Gossypium
           raimondii] gi|763744841|gb|KJB12280.1| hypothetical
           protein B456_002G009500 [Gossypium raimondii]
          Length = 479

 Score =  311 bits (797), Expect = 3e-82
 Identities = 160/268 (59%), Positives = 201/268 (75%), Gaps = 6/268 (2%)
 Frame = -2

Query: 786 KGKGQWLKLPPYSSSINPSLVGKAISRR----SLVXXXXXXXXXXALKWVLQCCPHLPRS 619
           K + +W  LPP++ ++N S +G  ++R+    S            ALKWVL+CCP LPR+
Sbjct: 52  KKESKWFTLPPFAKTVNASELGAKLARKNHLKSATSAETSAYETTALKWVLKCCPELPRN 111

Query: 618 LVQKLFRLRQVRRE--VASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELP 445
           LVQKLFRLRQVRRE      T   C   Q Q+ +++RV AKD +N+GD+IFLP SV+E+P
Sbjct: 112 LVQKLFRLRQVRRESIAMEVTDDGC---QVQKIQLKRVGAKDSLNIGDKIFLPISVREVP 168

Query: 444 SMKNDQCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDC 265
             K++  C ++E  ++ SLELYKD AIIV+NKPPGMPVQGGIGI  SLDELAAA LRYD 
Sbjct: 169 EEKHEHDCTDEESNFIRSLELYKDTAIIVLNKPPGMPVQGGIGIKWSLDELAAAWLRYDY 228

Query: 264 SENPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWAL 85
           SE+PRLVHRLDRDCSG+LVMGRTQ SA +LHS+FRE+T GAS    DN +R+LQ++YWAL
Sbjct: 229 SESPRLVHRLDRDCSGILVMGRTQMSAAILHSVFREETLGASKHDSDNEKRVLQKRYWAL 288

Query: 84  VIGTPRRAKGLISAPLAKVVMDNGKSER 1
           VIG+PRR KG ISAPL KVV+D+GKS+R
Sbjct: 289 VIGSPRRPKGTISAPLRKVVVDDGKSDR 316


>ref|XP_009341344.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Pyrus
           x bretschneideri]
          Length = 486

 Score =  311 bits (797), Expect = 3e-82
 Identities = 167/279 (59%), Positives = 203/279 (72%), Gaps = 17/279 (6%)
 Frame = -2

Query: 786 KGKGQWLKLPPYSSSINPSLVGKAISRR----------SLVXXXXXXXXXXALKWVLQCC 637
           KG  +W  LP +++++N + VGK +SR           +            ALKWV +CC
Sbjct: 51  KGGQKWFTLPSFTATVNGAAVGKELSRNRSNGGRGTITNTASAAADTTTTTALKWVTRCC 110

Query: 636 PHLPRSLVQKLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASV 457
           P LPRSLVQKLFRLRQVRRE  S  A     ++  +  ++RV+AKD MN+GDRI LP SV
Sbjct: 111 PELPRSLVQKLFRLRQVRRESCSGQA-----VEAHERPLKRVAAKDSMNIGDRIHLPFSV 165

Query: 456 KELPSMKN------DQC-CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLD 298
           +E P+ K+       +C C+E+EI ++ SLELYKDPAIIV+NKPPGMPVQGGIGI +SLD
Sbjct: 166 QEFPADKHKSSNYKQECHCSEEEINFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLD 225

Query: 297 ELAAASLRYDCSENPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNA 118
           +LA A L YD SE PRLVHRLDRD SG+LVMGRTQT A VLHSIFREKT GAS+   D+A
Sbjct: 226 KLATACLSYDLSEPPRLVHRLDRDSSGLLVMGRTQTIAAVLHSIFREKTVGASNDVTDDA 285

Query: 117 ERILQRKYWALVIGTPRRAKGLISAPLAKVVMDNGKSER 1
           +RILQR+YWALVIG+PR+ KGLISAPL KVV+DNGKSER
Sbjct: 286 KRILQRRYWALVIGSPRQRKGLISAPLVKVVVDNGKSER 324


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
           gi|557524859|gb|ESR36165.1| hypothetical protein
           CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  310 bits (794), Expect = 7e-82
 Identities = 164/260 (63%), Positives = 195/260 (75%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           +G+W  LPP++S+I+    G A+ R+             ALKWVLQCCP LPR+ VQKLF
Sbjct: 78  RGKWFTLPPFTSTID----GSALGRQLACPSKSPISETTALKWVLQCCPGLPRNFVQKLF 133

Query: 600 RLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKNDQCC 421
           RL QVRRE  S   +S  E   Q+ K++RV+AKD + LGDRIFLP S++E PS K    C
Sbjct: 134 RLSQVRRESPS-LDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRKEKCPC 192

Query: 420 NEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLVH 241
            E+E+ ++ SLELYKD AIIV+NKP GMPVQGGIGI +S+DELAA  L YD SE PRLVH
Sbjct: 193 TEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVH 252

Query: 240 RLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPRRA 61
           RLDRD SG+LVMGRTQTSATVLHSIFREKTF AS    DN +RILQR YWALV+GTPR +
Sbjct: 253 RLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCS 312

Query: 60  KGLISAPLAKVVMDNGKSER 1
           KG+ISAPL KVV+DNGKS+R
Sbjct: 313 KGVISAPLRKVVVDNGKSDR 332


>gb|KHG26351.1| hypothetical protein F383_00972 [Gossypium arboreum]
          Length = 505

 Score =  309 bits (792), Expect = 1e-81
 Identities = 159/268 (59%), Positives = 201/268 (75%), Gaps = 6/268 (2%)
 Frame = -2

Query: 786 KGKGQWLKLPPYSSSINPSLVGKAISRR----SLVXXXXXXXXXXALKWVLQCCPHLPRS 619
           K + +W  LPP++ +++ S +G  ++R+    S            ALKWVL+CCP LPR+
Sbjct: 52  KKESKWFTLPPFAKTVSASELGAKLARKNHLKSATSAETSAYKTTALKWVLKCCPELPRN 111

Query: 618 LVQKLFRLRQVRRE--VASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELP 445
           LVQKLFRLRQVRRE      T   C   Q Q+ +++RV AKD +N+GD+IFLP SV+E+P
Sbjct: 112 LVQKLFRLRQVRRESIAMEVTDDGC---QVQKIQLKRVGAKDSLNIGDKIFLPISVREVP 168

Query: 444 SMKNDQCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDC 265
             K++  C ++E  ++ SLELYKD AIIV+NKPPGMPVQGGIGI  SLDELAAA LRYD 
Sbjct: 169 EEKHEHDCTDEESNFIRSLELYKDTAIIVLNKPPGMPVQGGIGIKWSLDELAAAWLRYDY 228

Query: 264 SENPRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWAL 85
           SE+PRLVHRLDRDCSG+LVMGRTQ SA +LHS+FRE+T GAS    DN +R+LQ++YWAL
Sbjct: 229 SESPRLVHRLDRDCSGILVMGRTQMSAAILHSVFREETLGASKHDSDNEKRVLQKRYWAL 288

Query: 84  VIGTPRRAKGLISAPLAKVVMDNGKSER 1
           VIG+PRR KG ISAPL KVV+D+GKS+R
Sbjct: 289 VIGSPRRPKGTISAPLQKVVVDDGKSDR 316


>emb|CDO97224.1| unnamed protein product [Coffea canephora]
          Length = 477

 Score =  309 bits (791), Expect = 2e-81
 Identities = 155/265 (58%), Positives = 198/265 (74%), Gaps = 5/265 (1%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSL-----VXXXXXXXXXXALKWVLQCCPHLPRSL 616
           KG W  LPP++ S++ + +GK I+ R                  ALKWV +CCP LPRSL
Sbjct: 59  KGNWYALPPFTPSVDGAALGKTIAHRQTEKKHKASDTTSTSTMTALKWVTRCCPELPRSL 118

Query: 615 VQKLFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMK 436
           VQKLFRLRQVRR+           ++ +Q +++RV+AKD+MN GDRI LP S++++PS K
Sbjct: 119 VQKLFRLRQVRRD--------SYNVEVRQRQLKRVAAKDLMNSGDRIVLPVSIQKVPSAK 170

Query: 435 NDQCCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSEN 256
            D   +E+E+ ++HS+ L+KDPA+IVVNKPPGMPVQGGIGI +SLDELAA  LR+D SE+
Sbjct: 171 TDSTFSEEEMKFLHSMVLFKDPAVIVVNKPPGMPVQGGIGIKRSLDELAAKYLRFDDSES 230

Query: 255 PRLVHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIG 76
           PRLVHRLDRDCSG+LVMGRTQ SAT LHSIFREKT  AS   +D+  RI+++ YWALVIG
Sbjct: 231 PRLVHRLDRDCSGILVMGRTQLSATTLHSIFREKTLEASEYDLDSKRRIVRKTYWALVIG 290

Query: 75  TPRRAKGLISAPLAKVVMDNGKSER 1
           +PRR+KG+IS PL KVV+DNGKS+R
Sbjct: 291 SPRRSKGIISKPLGKVVVDNGKSDR 315


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  306 bits (783), Expect = 1e-80
 Identities = 161/262 (61%), Positives = 192/262 (73%)
 Frame = -2

Query: 786 KGKGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQK 607
           K  G++  LPPY+S+I+ S +GKA+S  +             LKWVL+CCP LPR+LVQK
Sbjct: 123 KNTGKFFTLPPYTSTISGSALGKALSATATAKASTETTA---LKWVLRCCPELPRNLVQK 179

Query: 606 LFRLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMKNDQ 427
           LFRLRQV+RE+ +            ++K +RV+AKD+MN+GDRIFLP SV+ LP  K   
Sbjct: 180 LFRLRQVKRELLNVGDGE------MEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQKC 233

Query: 426 CCNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRL 247
            C E E  ++  LELYKD AIIVVNKPPGMPVQGGIGI  S DELAA+ L YD SE PRL
Sbjct: 234 HCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRL 293

Query: 246 VHRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPR 67
           VHRLDRD SG+LVMGRTQTS  VLHS+FREKTF AS+  I    RILQRKYWALVIG+PR
Sbjct: 294 VHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPR 353

Query: 66  RAKGLISAPLAKVVMDNGKSER 1
           R KG+ISAPL KVV+D+GKS+R
Sbjct: 354 RQKGIISAPLGKVVVDDGKSDR 375


>ref|XP_009805029.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X3
           [Nicotiana sylvestris]
          Length = 381

 Score =  305 bits (780), Expect = 3e-80
 Identities = 153/261 (58%), Positives = 200/261 (76%), Gaps = 1/261 (0%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           KG+W  LPP+++++N + +GK ++    V          ALKWV +CCP LP+SLVQKLF
Sbjct: 87  KGKWFTLPPFTATVNGAALGKELAG---VKMDKSTNTMTALKWVQRCCPELPQSLVQKLF 143

Query: 600 RLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMK-NDQC 424
           RLRQVRRE +            ++ + +RV+AK+ MN+GDRIFLP +V++ PS K  D  
Sbjct: 144 RLRQVRRESSDV----------EEQRPKRVAAKESMNIGDRIFLPITVQKFPSDKVEDYP 193

Query: 423 CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLV 244
            +E+E+ ++HSLELYKDP IIV+NKPPG+PVQGGIGI +SLDELAA  ++Y+ SE PRLV
Sbjct: 194 SSEEEMKFLHSLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKYEYSEAPRLV 253

Query: 243 HRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPRR 64
           HRLDRDCSG+LVMGRTQ SA+VLHS+FREKTFG  +  +++ +R+LQ++YWALVIG PRR
Sbjct: 254 HRLDRDCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRR 313

Query: 63  AKGLISAPLAKVVMDNGKSER 1
           +KGLIS PL KVV+DNGKSER
Sbjct: 314 SKGLISVPLGKVVLDNGKSER 334


>ref|XP_009805027.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Nicotiana sylvestris]
          Length = 496

 Score =  305 bits (780), Expect = 3e-80
 Identities = 153/261 (58%), Positives = 200/261 (76%), Gaps = 1/261 (0%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           KG+W  LPP+++++N + +GK ++    V          ALKWV +CCP LP+SLVQKLF
Sbjct: 87  KGKWFTLPPFTATVNGAALGKELAG---VKMDKSTNTMTALKWVQRCCPELPQSLVQKLF 143

Query: 600 RLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMK-NDQC 424
           RLRQVRRE +            ++ + +RV+AK+ MN+GDRIFLP +V++ PS K  D  
Sbjct: 144 RLRQVRRESSDV----------EEQRPKRVAAKESMNIGDRIFLPITVQKFPSDKVEDYP 193

Query: 423 CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLV 244
            +E+E+ ++HSLELYKDP IIV+NKPPG+PVQGGIGI +SLDELAA  ++Y+ SE PRLV
Sbjct: 194 SSEEEMKFLHSLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKYEYSEAPRLV 253

Query: 243 HRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPRR 64
           HRLDRDCSG+LVMGRTQ SA+VLHS+FREKTFG  +  +++ +R+LQ++YWALVIG PRR
Sbjct: 254 HRLDRDCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRR 313

Query: 63  AKGLISAPLAKVVMDNGKSER 1
           +KGLIS PL KVV+DNGKSER
Sbjct: 314 SKGLISVPLGKVVLDNGKSER 334


>ref|XP_009629272.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Nicotiana tomentosiformis]
          Length = 464

 Score =  304 bits (779), Expect = 4e-80
 Identities = 155/261 (59%), Positives = 203/261 (77%), Gaps = 1/261 (0%)
 Frame = -2

Query: 780 KGQWLKLPPYSSSINPSLVGKAISRRSLVXXXXXXXXXXALKWVLQCCPHLPRSLVQKLF 601
           KG+W  LPP++ ++N + +GK ++    V          ALKWV +CCP LP+SLVQKLF
Sbjct: 55  KGKWFTLPPFNPTVNGAALGKELAG---VKMGKSTNTLTALKWVQRCCPELPQSLVQKLF 111

Query: 600 RLRQVRREVASPTAASCLEIQGQQNKIRRVSAKDVMNLGDRIFLPASVKELPSMK-NDQC 424
           RLRQVRRE      +S +E+Q    + +RV+AK+ MN+GDRIFLP +V++ PS K  D  
Sbjct: 112 RLRQVRRE------SSDVEVQ----RPKRVAAKEPMNIGDRIFLPITVQKFPSDKVTDYP 161

Query: 423 CNEDEIIYMHSLELYKDPAIIVVNKPPGMPVQGGIGITKSLDELAAASLRYDCSENPRLV 244
            +E+E+ ++HSLELYKDP IIV+NKPPG+PVQGGIGI +SLDELAA  ++++ SE PRLV
Sbjct: 162 SSEEEMKFLHSLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKFEYSEAPRLV 221

Query: 243 HRLDRDCSGVLVMGRTQTSATVLHSIFREKTFGASSSRIDNAERILQRKYWALVIGTPRR 64
           HRLDRDCSG+LVMGRTQ SA+VLHS+FREKTFG  +  +++ +R+LQ++YWALVIG PRR
Sbjct: 222 HRLDRDCSGILVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRR 281

Query: 63  AKGLISAPLAKVVMDNGKSER 1
           +KG+IS PLAKVV+DNGKSER
Sbjct: 282 SKGVISVPLAKVVLDNGKSER 302