BLASTX nr result

ID: Cinnamomum23_contig00030255 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00030255
         (318 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDO96782.1| unnamed protein product [Coffea canephora]             59   1e-06
ref|XP_010279107.1| PREDICTED: transcription factor IIIB 50 kDa ...    57   6e-06
ref|XP_010243578.1| PREDICTED: transcription factor IIIB 50 kDa ...    56   8e-06

>emb|CDO96782.1| unnamed protein product [Coffea canephora]
          Length = 524

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = +2

Query: 128 METSSLCKNCKERTIIFDSPSNTYVCSSCGVEQCGILVSQLEGSFNAPPGTFVRIGT--- 298
           ME+S  CKNC +RT++ D  +   VCSSCGV Q         G    P GTFVR+GT   
Sbjct: 1   MESSGSCKNCSKRTLVVDGDTGNLVCSSCGVVQDFENFQAHIGGITGPTGTFVRVGTAGS 60

Query: 299 -SEYNYR 316
            S Y+Y+
Sbjct: 61  GSVYSYK 67


>ref|XP_010279107.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720074725|ref|XP_010279108.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera]
          Length = 525

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +2

Query: 128 METSSLCKNCKERTIIFDSPSNTYVCSSCGVEQCGILVSQLEGSFNAPPGTFVRIGTS-- 301
           ME S  CK+C ++T+I D  ++T VC +CG+ Q         G  N P GTFVR+G S  
Sbjct: 1   MENSRTCKSCNKKTVIRDEFTDTLVCKNCGIVQELDNFQASFGGINGPQGTFVRVGASAS 60

Query: 302 -EYNYR 316
            EY+Y+
Sbjct: 61  GEYSYK 66


>ref|XP_010243578.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720085634|ref|XP_010243579.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720085638|ref|XP_010243580.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720085642|ref|XP_010243581.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720085646|ref|XP_010243582.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720085649|ref|XP_010243583.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera] gi|720085652|ref|XP_010243585.1| PREDICTED:
           transcription factor IIIB 50 kDa subunit-like [Nelumbo
           nucifera]
          Length = 525

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +2

Query: 128 METSSLCKNCKERTIIFDSPSNTYVCSSCGVEQCGILVSQLEGSFNAPPGTFVRIGTS-- 301
           ME S  CK+C ++T+I D  ++T VC +CG+ Q         G  N P GTFVR+G S  
Sbjct: 1   MENSRTCKSCNKKTVIRDEFTDTLVCRNCGIVQELDNFQASFGGINGPQGTFVRVGASAS 60

Query: 302 -EYNYR 316
            EY+Y+
Sbjct: 61  GEYSYK 66


Top