BLASTX nr result

ID: Cinnamomum23_contig00030112 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00030112
         (274 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009804318.1| PREDICTED: pentatricopeptide repeat-containi...    63   7e-08
ref|XP_009596666.1| PREDICTED: putative pentatricopeptide repeat...    62   1e-07
ref|XP_006358601.1| PREDICTED: pentatricopeptide repeat-containi...    60   7e-07
ref|XP_004246180.1| PREDICTED: pentatricopeptide repeat-containi...    58   3e-06

>ref|XP_009804318.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Nicotiana sylvestris]
          Length = 639

 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = -1

Query: 217 MAVISKVSKSKLRPCSLYLDRILKTQQNLSKSSPKIWK-QHKSDKFDDPNTRGERLLTLS 41
           MAV  K  K  L   S Y+++ +KTQ NLSK  PK+W  QH ++ FD  N    ++L LS
Sbjct: 1   MAVRFKHPKQSLSLSSEYVNKFIKTQINLSKPPPKLWSDQHDAESFDPYNNNSAQILNLS 60

Query: 40  HPLLRILES 14
           HP+LRIL+S
Sbjct: 61  HPILRILDS 69


>ref|XP_009596666.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Nicotiana tomentosiformis]
          Length = 639

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = -1

Query: 217 MAVISKVSKSKLRPCSLYLDRILKTQQNLSKSSPKIWK-QHKSDKFDDPNTRGERLLTLS 41
           MAV  K  K  L   S Y+++ +KTQ NLSK +PK+W  QH ++ FD  N    ++L LS
Sbjct: 1   MAVRFKHPKQSLSLSSEYVNKFIKTQINLSKPTPKLWSDQHNAESFDPYNNNSVQILNLS 60

Query: 40  HPLLRILE 17
           HP+LRIL+
Sbjct: 61  HPILRILD 68


>ref|XP_006358601.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Solanum tuberosum]
          Length = 639

 Score = 59.7 bits (143), Expect = 7e-07
 Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -1

Query: 217 MAVISKVSKSKLRPCSLYLDRILKTQQNLSKSSPKIWKQHKSDKFDDPNTRG-ERLLTLS 41
           MAV  K SK  L     Y+++ +KTQ NLSK +PK+W  H   +  DP   G    LTLS
Sbjct: 1   MAVRFKHSKQSLSLSLEYVNKFIKTQINLSKPTPKLWSDHDDAQSFDPYNNGVHSTLTLS 60

Query: 40  HPLLRILES 14
           HP+LRIL+S
Sbjct: 61  HPILRILDS 69


>ref|XP_004246180.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Solanum lycopersicum]
          Length = 639

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = -1

Query: 217 MAVISKVSKSKLRPCSLYLDRILKTQQNLSKSSPKIWKQHKSDKFDDPNTRG-ERLLTLS 41
           MAV  K  K  +   S Y+++ +KTQ NLSK +PK+W  H   +  DP   G    LTLS
Sbjct: 1   MAVRFKHMKQYVSLSSEYVNKFIKTQINLSKPTPKLWSDHDDVQSFDPYNNGVHSTLTLS 60

Query: 40  HPLLRILES 14
           HP+LRIL+S
Sbjct: 61  HPILRILDS 69


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