BLASTX nr result

ID: Cinnamomum23_contig00029997 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00029997
         (634 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002888355.1| expressed protein [Arabidopsis lyrata subsp....    46   2e-08
gb|KFK32428.1| hypothetical protein AALP_AA6G240600 [Arabis alpina]    53   6e-06

>ref|XP_002888355.1| expressed protein [Arabidopsis lyrata subsp. lyrata]
           gi|297334196|gb|EFH64614.1| expressed protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 90

 Score = 45.8 bits (107), Expect(2) = 2e-08
 Identities = 22/30 (73%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
 Frame = +3

Query: 264 FSFHS-LSGSVVVLQTPPMVWTNPLLHQNV 350
           + FHS LSGSVVVLQT P +WTNP LH NV
Sbjct: 61  YFFHSFLSGSVVVLQTLPRIWTNPFLHTNV 90



 Score = 39.7 bits (91), Expect(2) = 2e-08
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
 Frame = +2

Query: 86  EARCFWFPYNWS----YRALSIYSLDPT*IDLTPFQEKNQNKILYRSVKDE-VF*EFSID 250
           EAR F+F +N      Y ++ IYSLDP       F  K +   LYRS K + +  EFS+D
Sbjct: 2   EARFFFFSWNQENWVFYPSIYIYSLDPNWNSFF-FDIKIR---LYRSGKQKKMLSEFSLD 57

Query: 251 TTCCFFLSF 277
           TTC FF SF
Sbjct: 58  TTCYFFHSF 66


>gb|KFK32428.1| hypothetical protein AALP_AA6G240600 [Arabis alpina]
          Length = 38

 Score = 52.8 bits (125), Expect(2) = 6e-06
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 263 FFLSFPFRISRGLTNSTNGMDESVASSKCVKDHSRT 370
           FF   PFRISRGLTNST  +DES +S KCVKD SRT
Sbjct: 3   FFPFIPFRISRGLTNSTADLDESFSSYKCVKDASRT 38



 Score = 24.6 bits (52), Expect(2) = 6e-06
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 256 MLFFPFIPFQ 285
           MLFFPFIPF+
Sbjct: 1   MLFFPFIPFR 10


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