BLASTX nr result
ID: Cinnamomum23_contig00029475
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00029475
(487 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006352475.1| PREDICTED: pentatricopeptide repeat-containi... 72 1e-10
ref|XP_004250548.1| PREDICTED: pentatricopeptide repeat-containi... 71 2e-10
ref|XP_007152938.1| hypothetical protein PHAVU_004G172900g [Phas... 69 2e-09
emb|CDO99958.1| unnamed protein product [Coffea canephora] 67 6e-09
ref|XP_003530188.2| PREDICTED: pentatricopeptide repeat-containi... 67 6e-09
ref|XP_008368714.1| PREDICTED: pentatricopeptide repeat-containi... 66 8e-09
ref|XP_008244392.1| PREDICTED: pentatricopeptide repeat-containi... 66 8e-09
ref|XP_006372504.1| hypothetical protein POPTR_0017s02260g [Popu... 63 7e-08
emb|CDY02282.1| BnaA03g38850D [Brassica napus] 60 6e-07
ref|XP_001351287.1| conserved Plasmodium protein, unknown functi... 60 7e-07
ref|NP_200198.1| early nodulin-like protein 1 [Arabidopsis thali... 59 1e-06
ref|XP_011038297.1| PREDICTED: pentatricopeptide repeat-containi... 59 1e-06
ref|XP_009136277.1| PREDICTED: pentatricopeptide repeat-containi... 59 1e-06
gb|KFK25509.1| hypothetical protein AALP_AA8G124100 [Arabis alpina] 59 1e-06
gb|AAZ54315.1| Surface protein from Gram-positive cocci, anchor ... 59 1e-06
dbj|BAD43029.1| predicted GPI-anchored protein [Arabidopsis thal... 59 1e-06
ref|XP_009764432.1| PREDICTED: pentatricopeptide repeat-containi... 59 1e-06
ref|XP_011082278.1| PREDICTED: pentatricopeptide repeat-containi... 59 2e-06
ref|XP_004288384.1| PREDICTED: pentatricopeptide repeat-containi... 59 2e-06
ref|XP_011407990.1| PREDICTED: DNA-directed RNA polymerase II su... 58 2e-06
>ref|XP_006352475.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Solanum tuberosum]
Length = 646
Score = 72.0 bits (175), Expect = 1e-10
Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Frame = -3
Query: 263 SHSTSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKR 84
++S+ KK N P + + ++ L KS KL EAL L+E++ ++++++YS LLH CISK+
Sbjct: 20 ANSSFKKLNKTPTNPFNSSLKSLTKSGKLDEALLLIESQKSSQLDIESYSSLLHACISKK 79
Query: 83 SIQHGERIHRHLL---RSNLLKDP 21
S++HG R++ HLL ++L DP
Sbjct: 80 SVEHGHRLYIHLLLNSNKSILNDP 103
>ref|XP_004250548.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Solanum lycopersicum] gi|723742047|ref|XP_010312728.1|
PREDICTED: pentatricopeptide repeat-containing protein
At3g14330 [Solanum lycopersicum]
Length = 646
Score = 71.2 bits (173), Expect = 2e-10
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Frame = -3
Query: 263 SHSTSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKR 84
++S+ KK N P + + ++ L KS KL EAL L+E++ ++++++YS LLH CISK+
Sbjct: 20 ANSSFKKLNKTPTNPFNSSLKSLTKSGKLDEALLLIESQKSSQLDIESYSSLLHACISKK 79
Query: 83 SIQHGERIHRHLL---RSNLLKDP 21
S++HG R++ HLL + L DP
Sbjct: 80 SVEHGHRLYIHLLLNSNKSFLNDP 103
>ref|XP_007152938.1| hypothetical protein PHAVU_004G172900g [Phaseolus vulgaris]
gi|561026247|gb|ESW24932.1| hypothetical protein
PHAVU_004G172900g [Phaseolus vulgaris]
Length = 648
Score = 68.6 bits (166), Expect = 2e-09
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Frame = -3
Query: 290 TSNKPNHNPSHSTSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQT--- 120
T P + + K P +ST ++ LCK L EAL+L+E+ P IE +
Sbjct: 15 TKTAATSTPRTTNTHKHRTTPFNST---LKSLCKWGNLDEALRLIESSKPTVIEKEEEEE 71
Query: 119 -YSLLLHTCISKRSIQHGERIHRHLLRS--NLLKDPNLQRQI 3
SL LHTCIS+RS++HG ++H HLLRS +L++P L+ ++
Sbjct: 72 GVSLFLHTCISRRSLEHGRKLHLHLLRSQNRVLENPTLKSKL 113
>emb|CDO99958.1| unnamed protein product [Coffea canephora]
Length = 641
Score = 66.6 bits (161), Expect = 6e-09
Identities = 35/76 (46%), Positives = 51/76 (67%)
Frame = -3
Query: 248 KKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKRSIQHG 69
++ NH PL+ST + L KS KL EALQL+E + +EV++ + LH CIS +S+QHG
Sbjct: 27 QRKNHKPLNST---FKSLSKSGKLDEALQLIEFQQFRNLEVESCTTFLHACISTKSLQHG 83
Query: 68 ERIHRHLLRSNLLKDP 21
+R+++H L S LL P
Sbjct: 84 QRLYKH-LPSTLLSSP 98
>ref|XP_003530188.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 706
Score = 66.6 bits (161), Expect = 6e-09
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Frame = -3
Query: 305 NPSHSTSNKPNHNPSHSTSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSP----D 138
N + T+ P + + K P +ST ++ LCK L +AL+L+E+ P +
Sbjct: 66 NITVKTNITATSTPRTTNTHKHKTTPFNST---LKSLCKWGNLDKALRLIESSKPTPIEE 122
Query: 137 EIEVQTYSLLLHTCISKRSIQHGERIHRHLLRS--NLLKDPNLQRQI 3
E E ++ SL LH CIS+RS++HG ++H HLLRS +L++P L+ ++
Sbjct: 123 EEEEESISLFLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKL 169
>ref|XP_008368714.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Malus domestica]
Length = 654
Score = 66.2 bits (160), Expect = 8e-09
Identities = 40/94 (42%), Positives = 65/94 (69%), Gaps = 12/94 (12%)
Frame = -3
Query: 248 KKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEI-----EVQTYSLLLHTCISKR 84
+KP+ PL ST +++L KS KL EAL+L+E+ SP ++ +++ YSLLLHTCIS+R
Sbjct: 29 QKPS-KPLPST---LKWLAKSGKLDEALRLIES-SPSKLTATQSDIEAYSLLLHTCISRR 83
Query: 83 SIQHGERIHRHLLRSN-------LLKDPNLQRQI 3
S++HG+R++ LL S+ LL++P L+ ++
Sbjct: 84 SLEHGQRLYLQLLLSDDRXENGILLRNPTLKSKL 117
>ref|XP_008244392.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Prunus mume]
Length = 636
Score = 66.2 bits (160), Expect = 8e-09
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 12/109 (11%)
Frame = -3
Query: 293 STSNKPNHNPSHSTSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPD-----EIE 129
+ ++ PN HS PL ST +++L KS KL EAL+L+E+ SP E++
Sbjct: 2 TVTSGPNGTKKHS-------KPLTST---LKWLAKSGKLDEALRLIES-SPSRLTFTELD 50
Query: 128 VQTYSLLLHTCISKRSIQHGERIHRHLLRS-------NLLKDPNLQRQI 3
V+ YSLLLHTCIS++S++HG R++ LL S +LL +P L+ ++
Sbjct: 51 VEAYSLLLHTCISRKSLEHGRRLYLQLLLSKDRGNNHSLLHNPTLKSKL 99
>ref|XP_006372504.1| hypothetical protein POPTR_0017s02260g [Populus trichocarpa]
gi|550319130|gb|ERP50301.1| hypothetical protein
POPTR_0017s02260g [Populus trichocarpa]
Length = 648
Score = 63.2 bits (152), Expect = 7e-08
Identities = 32/88 (36%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Frame = -3
Query: 254 TSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKRSIQ 75
+ K P+ NP + T ++YL KS L EA++L+E+ + +TYS LLH+CIS++S+
Sbjct: 25 SQKPPSKNPQNLNQT-LKYLTKSGNLDEAIRLIESSPSKFTDPETYSQLLHSCISQKSLH 83
Query: 74 HGERIHRHLLR----SNLLKDPNLQRQI 3
HG+R+++ LL+ L++ NL+ ++
Sbjct: 84 HGQRVYKQLLKQEYSEKFLENHNLKGKL 111
>emb|CDY02282.1| BnaA03g38850D [Brassica napus]
Length = 503
Score = 60.1 bits (144), Expect = 6e-07
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Frame = -3
Query: 401 SNKPKHNPSHSNNLNNKPTQNQS----HFTSNKRNHNPSHSTSNKPNHNPS----HSTSK 246
S P S ++ QNQS H + N +P H +P H P + +
Sbjct: 63 SYPPPQRQSPPPGFDSHRFQNQSNTDHHRAPQRYNQSPQHG-GYRPQHAPRGGYHNQNVQ 121
Query: 245 KPNH-NPLHSTCTQVEYLCKSSKLQEALQLLETKS-PDEIEVQTYSLLLHTCISKRSIQH 72
PN N + T ++ LCK + ++A++LL+ + PD+ +SLL +C + +S++H
Sbjct: 122 NPNQSNEIAPTVEEIVRLCKLRRFKDAIELLDKGALPDK---DCFSLLFESCANLKSLEH 178
Query: 71 GERIHRHLLRSNLLKDPNLQRQI 3
+++H H LRS DP L +
Sbjct: 179 SKKVHDHFLRSVFRSDPKLNNVV 201
>ref|XP_001351287.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7] gi|8052285|emb|CAB39037.2| conserved
Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 1946
Score = 59.7 bits (143), Expect = 7e-07
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = -3
Query: 416 SSHSTSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSHSTSNKPNHNPSHSTSKKPN 237
+SH+ S+ HN SH+N+ NN + N SH S+ +HN SH+ S+ +HN SH+ S +
Sbjct: 312 NSHNNSHNNSHNNSHNNSHNN--SHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNS 369
Query: 236 HNPLHSTCTQV 204
HN H+ +
Sbjct: 370 HNNSHNNSCNI 380
Score = 59.3 bits (142), Expect = 1e-06
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = -3
Query: 416 SSHSTSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSHSTSNKPNHNPSHSTSKKPN 237
+SH+ S+ HN SH+N+ NN + N SH S+ +HN SH+ S+ +HN SH+ S +
Sbjct: 308 NSHNNSHNNSHNNSHNNSHNN--SHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNS 365
Query: 236 HNPLHS 219
HN H+
Sbjct: 366 HNNSHN 371
Score = 57.0 bits (136), Expect = 5e-06
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = -3
Query: 416 SSHSTSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSHSTSNKPNHNPSHSTSKKPN 237
+S++ S+ HN SH+N+ NN + N SH S+ +HN SH+ S+ +HN SH+ S +
Sbjct: 304 NSYNNSHNNSHNNSHNNSHNN--SHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNSHNNS 361
Query: 236 HNPLHS 219
HN H+
Sbjct: 362 HNNSHN 367
>ref|NP_200198.1| early nodulin-like protein 1 [Arabidopsis thaliana]
gi|10177249|dbj|BAB10717.1| unnamed protein product
[Arabidopsis thaliana] gi|109946411|gb|ABG48384.1|
At5g53870 [Arabidopsis thaliana]
gi|332009038|gb|AED96421.1| early nodulin-like protein 1
[Arabidopsis thaliana]
Length = 370
Score = 59.3 bits (142), Expect = 1e-06
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = -3
Query: 413 SHSTSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSHSTSNKPNHNPSHSTSKKPNH 234
SHS S+ P H PSHS +H S+ H PSHS ++ P+H+P+H+ S P H
Sbjct: 218 SHSPSHSPAHTPSHS----------PAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAH 267
Query: 233 NPLHSTCT 210
+P HS T
Sbjct: 268 SPSHSPAT 275
>ref|XP_011038297.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Populus euphratica]
Length = 648
Score = 59.3 bits (142), Expect = 1e-06
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Frame = -3
Query: 248 KKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKRSIQHG 69
K P+ N + T ++YL KS L EA+ L+E+ + +TYS LLH+CIS++S+ HG
Sbjct: 27 KPPSKNSQNLNQT-LKYLTKSGNLDEAIHLIESSPSKFTDPETYSHLLHSCISQKSLHHG 85
Query: 68 ERIHRHLLR----SNLLKDPNLQRQI 3
+R+++ LL+ L++ NL+ ++
Sbjct: 86 QRVYKQLLKQEYSEKFLENHNLKSKL 111
>ref|XP_009136277.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Brassica rapa]
Length = 503
Score = 59.3 bits (142), Expect = 1e-06
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Frame = -3
Query: 410 HSTSNKPKHNPSHSN---NLNNKPTQNQS----HFTSNKRNHNPSHSTSNKPNHNP---- 264
HS ++ P P N ++ QNQS H + N +P H +P H P
Sbjct: 59 HSVASYPP--PQRQNPPPGFDSHRFQNQSNTDHHRAPQRYNQSPQHG-GYRPQHAPRGGY 115
Query: 263 SHSTSKKPNH-NPLHSTCTQVEYLCKSSKLQEALQLLETKS-PDEIEVQTYSLLLHTCIS 90
+ + PN N + T ++ LCK + ++A++LL+ + PD+ +SLL +C +
Sbjct: 116 NQVNYQNPNQINEIAPTVEEIVRLCKLRRFKDAIELLDKGALPDK---DCFSLLFESCAN 172
Query: 89 KRSIQHGERIHRHLLRSNLLKDPNLQRQI 3
+S++H +++H H LRS DP L +
Sbjct: 173 LKSLEHSKKVHDHFLRSVFRSDPKLNNVV 201
>gb|KFK25509.1| hypothetical protein AALP_AA8G124100 [Arabis alpina]
Length = 541
Score = 59.3 bits (142), Expect = 1e-06
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Frame = -3
Query: 386 HNPSHSNNLNNKPTQNQSHFTSNKRNHNPSHSTSNKPNHNPSHSTSKKPNHNPLHS---- 219
H NN N P Q Q+ +NH + + N S+ + N N + +
Sbjct: 111 HRGGGGNNYQN-PGQYQNRAQQIPQNHGQYQNRPQQIPQNQSYPQQQPRNSNQIPNQVIP 169
Query: 218 TCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKRSIQHGERIHRHLLRS 39
T +V +LCK + ++A++LL+ + + E +SLL +C + +S++H +++H H L+S
Sbjct: 170 TVEEVMHLCKLRRYKDAIELLDKGALPDAEC--FSLLFESCGNLKSLEHSKKVHDHFLQS 227
Query: 38 NLLKDPNLQRQI 3
DP L +
Sbjct: 228 KFRADPKLNNMV 239
>gb|AAZ54315.1| Surface protein from Gram-positive cocci, anchor region
[Thermobifida fusca YX]
Length = 302
Score = 59.3 bits (142), Expect = 1e-06
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = -3
Query: 413 SHSTSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSH--STSNKPNHNPSHS--TSK 246
SH ++ P H+P+HS+ + PT + +H S+K H+P+H + S+KP H+P+HS +
Sbjct: 169 SHHPTHHPTHHPTHSHKPTHHPTHHPTH--SHKPTHHPTHHPTHSHKPTHHPTHSHKPTH 226
Query: 245 KPNHNPLHS 219
KP H+P HS
Sbjct: 227 KPTHHPTHS 235
Score = 58.9 bits (141), Expect = 1e-06
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = -3
Query: 401 SNKPKHNPSHSNNLNNKPTQNQSHFT--SNKRNHNPSHSTSNKPNHNPSHSTSKKPNHNP 228
S+KP H+P+H ++KPT + +H S+K H+P+H S+KP H P+H + P H+P
Sbjct: 183 SHKPTHHPTHHPTHSHKPTHHPTHHPTHSHKPTHHPTH--SHKPTHKPTHHPTHSPTHSP 240
Query: 227 LHS 219
HS
Sbjct: 241 THS 243
Score = 56.6 bits (135), Expect = 6e-06
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Frame = -3
Query: 404 TSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSH--STSNKPNHNPSH--STSKKPN 237
T + P H+P+HS++ + PT + +H S+K H+P+H + S+KP H+P+H + S KP
Sbjct: 158 THHHPTHHPTHSHHPTHHPTHHPTH--SHKPTHHPTHHPTHSHKPTHHPTHHPTHSHKPT 215
Query: 236 HNPLHS 219
H+P HS
Sbjct: 216 HHPTHS 221
>dbj|BAD43029.1| predicted GPI-anchored protein [Arabidopsis thaliana]
Length = 370
Score = 59.3 bits (142), Expect = 1e-06
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = -3
Query: 413 SHSTSNKPKHNPSHSNNLNNKPTQNQSHFTSNKRNHNPSHSTSNKPNHNPSHSTSKKPNH 234
SHS S+ P H PSHS +H S+ H PSHS ++ P+H+P+H+ S P H
Sbjct: 218 SHSPSHSPAHTPSHS----------PAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAH 267
Query: 233 NPLHSTCT 210
+P HS T
Sbjct: 268 SPSHSPAT 275
>ref|XP_009764432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Nicotiana sylvestris]
Length = 646
Score = 58.9 bits (141), Expect = 1e-06
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Frame = -3
Query: 257 STSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEIE-VQTYSLLLHTCISKRS 81
S+ K N P T ++ L KS KL +AL LLE++ + E ++Y LLH CIS++S
Sbjct: 19 SSFNKLNKTPPKPFNTNLKSLTKSGKLNDALLLLESQKNSQPENKESYLNLLHACISQKS 78
Query: 80 IQHGERIHRHLL----RSNLLKDP 21
++HG R++ HLL RS L DP
Sbjct: 79 LEHGHRLYLHLLLNPNRSKFLNDP 102
>ref|XP_011082278.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Sesamum indicum]
Length = 649
Score = 58.5 bits (140), Expect = 2e-06
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 9/104 (8%)
Frame = -3
Query: 299 SHSTSNKPNHNPSHSTSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLL----ETKSP-DE 135
S S +N P+ S + L+ST ++ L KS KL EAL LL ++++P +
Sbjct: 7 SLSITNLTVTPPTKSLKQLRTQKSLNST---LKSLSKSGKLDEALHLLLESHQSRTPFGQ 63
Query: 134 IEVQTYSLLLHTCISKRSIQHGERIHRHLLRS----NLLKDPNL 15
+++Y+ LLH CIS++S+ HG R++ HLL+S +LLK+P L
Sbjct: 64 PNLESYTTLLHACISRKSLSHGRRLYLHLLQSEDDTDLLKNPTL 107
>ref|XP_004288384.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Fragaria vesca subsp. vesca]
Length = 642
Score = 58.5 bits (140), Expect = 2e-06
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Frame = -3
Query: 257 STSKKPNHNPLHSTCTQVEYLCKSSKLQEALQLLETKSPDEI-----EVQTYSLLLHTCI 93
S S P T + ++ L KS KL+EA++L+E SP ++ +++ YSLLLHTCI
Sbjct: 16 SGSAIPQKPSKPQTPSTLKCLAKSGKLEEAIRLIEA-SPSKLTATQSDMEAYSLLLHTCI 74
Query: 92 SKRSIQHGERIHRHLLRSN---LLKDPNLQRQI 3
S++S++HG+R++ L S L+ +P L+ ++
Sbjct: 75 SQKSLEHGQRLYLQFLLSKHSLLVNNPTLKSKL 107
>ref|XP_011407990.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like
[Amphimedon queenslandica]
Length = 246
Score = 58.2 bits (139), Expect = 2e-06
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = -3
Query: 398 NKPKHNPSHSNNLNNKPTQNQSH-FTSNKRNHNPSHSTS-NKPNHNPSHSTS-KKPNHNP 228
N P H+PSHS + N+ PT SH ++ N H+PSHS S N P H+PSHS S P H P
Sbjct: 84 NSPTHSPSHSYSYNS-PTHLPSHSYSYNSPTHSPSHSYSYNSPTHSPSHSYSYNSPTHLP 142
Query: 227 LHSTCTQVEYLCKSSKLQEALQLLETKSPDEIEVQTYSLLLHTCISKRSIQHGERIH 57
+H L + +P I + +Y+L H + S H H
Sbjct: 143 IH---------------------LYSHNPSPIHLYSYNLPTH--LPSHSYSHNSPTH 176