BLASTX nr result

ID: Cinnamomum23_contig00027309 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00027309
         (770 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_005863394.1| PREDICTED: soluble scavenger receptor cystei...    51   1e-05

>ref|XP_005863394.1| PREDICTED: soluble scavenger receptor cysteine-rich
           domain-containing protein SSC5D, partial [Myotis
           brandtii]
          Length = 805

 Score = 50.8 bits (120), Expect(2) = 1e-05
 Identities = 45/158 (28%), Positives = 56/158 (35%), Gaps = 9/158 (5%)
 Frame = +1

Query: 169 LPGLLFHRLPSPSSIKTQPLSPHCRTQNPHSTNFPTISKSPNPLHCNS*AQRP----TPH 336
           +P     RLP P          H  T  PH    P  + +P P      A  P    TPH
Sbjct: 485 VPSPEMRRLPGPGE-------EHDPTTTPHPITIPHPTTTPQPATAAHPATTPFPSTTPH 537

Query: 337 LPLTHHQNQEPLPTSRALAYSISIETTIPSHKDPIHPQSTFTVTRNPSLLKPPNS-PFHT 513
           LP T H      P S     +I    T P      HP    T T +P+L   P S P  T
Sbjct: 538 LPTTSHPTTTSQPISTPNPITIPYPVTAPHPTTTPHP----TTTTHPALAPGPTSAPVVT 593

Query: 514 IRNL----RYQNPFPNNHIIPNTQLHPNPTISVESHPN 615
            ++L      + P P   +     LHP  T     HP+
Sbjct: 594 TKSLLTSSETELPSPTPALTAKPSLHPQWTFMGAPHPS 631



 Score = 26.2 bits (56), Expect(2) = 1e-05
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 615 PNPISQSTVTPHPHPNNQSENPSIPTPNP 701
           P+P   S++ P P P +   NPS P+P P
Sbjct: 630 PSPSHVSSLEPSPDPES---NPSSPSPAP 655


Top