BLASTX nr result
ID: Cinnamomum23_contig00023402
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00023402
(1891 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 555 0.0
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 555 0.0
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 550 0.0
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su... 528 e-175
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su... 527 e-172
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 526 e-171
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su... 516 e-170
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r... 516 e-170
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su... 516 e-170
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su... 504 e-168
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 509 e-167
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 504 e-166
ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV su... 583 e-163
ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV su... 486 e-162
ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV su... 573 e-160
ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV su... 493 e-160
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 483 e-160
ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV su... 465 e-157
gb|ERN19396.1| hypothetical protein AMTR_s00069p00150990 [Ambore... 475 e-157
ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV su... 464 e-157
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 555 bits (1430), Expect(2) = 0.0
Identities = 287/518 (55%), Positives = 360/518 (69%), Gaps = 2/518 (0%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC NS+DWYP MKFK SSKDLF K I VE+NE LPKK + K+ +LP DYWDFIP
Sbjct: 125 CKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIP 184
Query: 1376 KDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVME 1197
KDP++E+ + P + L QV LLK++DP FI++FVSR +S FL+ +PVTPN +RV E
Sbjct: 185 KDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTE 244
Query: 1196 TMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXXX 1017
H ++G L FD+ +RAY++LVDF E S RVLDCL
Sbjct: 245 ITHALSNGQTLIFDQHSRAYKKLVDFRGTANEL--------------SCRVLDCLKTSKL 290
Query: 1016 XXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDISENMQI 837
S SGLKWIKEVLLGKRT+++FRM VVGDPK+ L EIGIP I+E + I
Sbjct: 291 RSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLI 350
Query: 836 SEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLVDGDLVL 657
SE++NS N + + CNLRLL+ GQ Y + KG L + + Q G+ +YRPL DGD+VL
Sbjct: 351 SEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVL 410
Query: 656 INRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSINSRVELQ 477
INRPPS+HQHS+IA +VK LP+ SV+S+NPLCC+PF GDFDGDCLHGY+PQS++SRVEL
Sbjct: 411 INRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELS 470
Query: 476 ELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPRELQCPAI 297
ELV+ L LSQDSL+AA+L+ V LN FQMQQLEMFCP +LQ PAI
Sbjct: 471 ELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAI 530
Query: 296 LKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNSGDNVFS 117
+KAPLL + +WTGKQLFSMLLP F++ + V I G ++ SS S WLR+ N+FS
Sbjct: 531 IKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFS 590
Query: 116 SLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
SL+K C KA+DFL++AQE+LCEW+SMRGL+VSLSDIY
Sbjct: 591 SLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIY 628
Score = 122 bits (307), Expect(2) = 0.0
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
LL GIKFD+ T+ ++EK S I+ +++T P LG+PN + +CSTC +DTK C+GHFG
Sbjct: 15 LLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGV 74
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVR 1616
IK P TI HPYF+ E++QILNK+CPGCKS R
Sbjct: 75 IKFPFTILHPYFLTEVVQILNKICPGCKSTR 105
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 555 bits (1430), Expect(2) = 0.0
Identities = 287/518 (55%), Positives = 360/518 (69%), Gaps = 2/518 (0%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC NS+DWYP MKFK SSKDLF K I VE+NE LPKK + K+ +LP DYWDFIP
Sbjct: 125 CKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIP 184
Query: 1376 KDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVME 1197
KDP++E+ + P + L QV LLK++DP FI++FVSR +S FL+ +PVTPN +RV E
Sbjct: 185 KDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTE 244
Query: 1196 TMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXXX 1017
H ++G L FD+ +RAY++LVDF E S RVLDCL
Sbjct: 245 ITHALSNGQTLIFDQHSRAYKKLVDFRGTANEL--------------SCRVLDCLKTSKL 290
Query: 1016 XXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDISENMQI 837
S SGLKWIKEVLLGKRT+++FRM VVGDPK+ L EIGIP I+E + I
Sbjct: 291 RSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLI 350
Query: 836 SEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLVDGDLVL 657
SE++NS N + + CNLRLL+ GQ Y + KG L + + Q G+ +YRPL DGD+VL
Sbjct: 351 SEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVL 410
Query: 656 INRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSINSRVELQ 477
INRPPS+HQHS+IA +VK LP+ SV+S+NPLCC+PF GDFDGDCLHGY+PQS++SRVEL
Sbjct: 411 INRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELS 470
Query: 476 ELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPRELQCPAI 297
ELV+ L LSQDSL+AA+L+ V LN FQMQQLEMFCP +LQ PAI
Sbjct: 471 ELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAI 530
Query: 296 LKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNSGDNVFS 117
+KAPLL + +WTGKQLFSMLLP F++ + V I G ++ SS S WLR+ N+FS
Sbjct: 531 IKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFS 590
Query: 116 SLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
SL+K C KA+DFL++AQE+LCEW+SMRGL+VSLSDIY
Sbjct: 591 SLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIY 628
Score = 122 bits (307), Expect(2) = 0.0
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
LL GIKFD+ T+ ++EK S I+ +++T P LG+PN + +CSTC +DTK C+GHFG
Sbjct: 15 LLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGV 74
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVR 1616
IK P TI HPYF+ E++QILNK+CPGCKS R
Sbjct: 75 IKFPFTILHPYFLTEVVQILNKICPGCKSTR 105
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 550 bits (1418), Expect(2) = 0.0
Identities = 286/521 (54%), Positives = 359/521 (68%), Gaps = 5/521 (0%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC NS+DWYP MKFK SSKDLF K I VE+NE LPKK + K+ +LP DYWDFIP
Sbjct: 125 CKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIP 184
Query: 1376 KDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVME 1197
KDP++E+ + P + L QV LLK++DP FI++FVSR +S FL+ +PVTPN +RV E
Sbjct: 185 KDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTE 244
Query: 1196 TMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXXX 1017
H ++G L FD+ +RAY++LVDF E S RVLDCL
Sbjct: 245 ITHALSNGQTLIFDQHSRAYKKLVDFRGTANEL--------------SCRVLDCLKTSKA 290
Query: 1016 XXXXXXXXXXXSCKS---GLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDISEN 846
S GLKWIKEVLLGKRT+++FRM VVGDPK+ L EIGIP I+E
Sbjct: 291 SNLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEE 350
Query: 845 MQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLVDGD 666
+ ISE++NS N + + CNLRLL+ GQ Y + KG L + + Q G+ +YRPL DGD
Sbjct: 351 LLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGD 410
Query: 665 LVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSINSRV 486
+VLINRPPS+HQHS+IA +VK LP+ SV+S+NPLCC+PF GDFDGDCLHGY+PQS++SRV
Sbjct: 411 IVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRV 470
Query: 485 ELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPRELQC 306
EL ELV+ L LSQDSL+AA+L+ V LN FQMQQLEMFCP +LQ
Sbjct: 471 ELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQS 530
Query: 305 PAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNSGDN 126
PAI+KAPLL + +WTGKQLFSMLLP F++ + V I G ++ SS S WLR+ N
Sbjct: 531 PAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGN 590
Query: 125 VFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
+FSSL+K C KA+DFL++AQE+LCEW+SMRGL+VSLSDIY
Sbjct: 591 LFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIY 631
Score = 122 bits (307), Expect(2) = 0.0
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
LL GIKFD+ T+ ++EK S I+ +++T P LG+PN + +CSTC +DTK C+GHFG
Sbjct: 15 LLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGV 74
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVR 1616
IK P TI HPYF+ E++QILNK+CPGCKS R
Sbjct: 75 IKFPFTILHPYFLTEVVQILNKICPGCKSTR 105
>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nelumbo nucifera]
Length = 1489
Score = 528 bits (1361), Expect(2) = e-175
Identities = 272/542 (50%), Positives = 365/542 (67%), Gaps = 13/542 (2%)
Frame = -3
Query: 1589 MENWTSAYHLPMSCKYCLP--NSSDWYPAMKFK-SSKDLFGKK---ITVEVNENLPKKFE 1428
+++ T H CKYC +S +WYP MKFK +SKDL K + VEVNE LPKKF
Sbjct: 116 LKSLTMDSHQYKDCKYCAKQGSSKEWYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFA 175
Query: 1427 SKNPHKILPEDYWDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNS 1248
+KN ++LP DYWD I KDP +E+ + P + +L P+QV+ LLK +D +F++KFV R +
Sbjct: 176 NKNLGEVLPTDYWDCIQKDPEQEESFLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEA 235
Query: 1247 LFLSSIPVTPNCNRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADI 1068
+FLS PVTPNC+R+ME H+ ++G +L FDERT+A ++L+D + E
Sbjct: 236 IFLSCFPVTPNCHRIMELTHLSSNGHQLAFDERTKAMKKLIDSKRHANEL---------- 285
Query: 1067 PYRTSDRVLDCLNVXXXXXXXXXXXXXXSCKS-------GLKWIKEVLLGKRTDYAFRMT 909
S V +CL+V K+ GLKWIKE++LGKRTDYAFRMT
Sbjct: 286 ----SLHVRNCLSVSKLHTDKSLKKDTVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMT 341
Query: 908 VVGDPKIGLGEIGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFS 729
V+GDPKI L EIG+P ++EN+QI EY+N N + L L++ G+++ + KG L
Sbjct: 342 VIGDPKISLCEIGVPRMVAENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQ 401
Query: 728 MHHTDKLQIGNTLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPF 549
+ T +L++G+ +YR L DGD+VLINRPPSVHQHSL+A +VK LP+ SV+S+NPLCC+P
Sbjct: 402 LCDTSELKLGDIVYRHLDDGDIVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPL 461
Query: 548 LGDFDGDCLHGYVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSD 369
GDFDGDCLHG++ Q+I+ RVEL+ELV+ L LS DSL+AA+L+T +
Sbjct: 462 SGDFDGDCLHGFIAQAIDCRVELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNG 521
Query: 368 VFLNKFQMQQLEMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLI 189
VFL+ FQMQQL+M CP +LQ P ILKAPLL++PLWTGKQLF MLLP+SFD+ S V I
Sbjct: 522 VFLDMFQMQQLKMLCPHQLQIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKI 581
Query: 188 RKGNILYSSGESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSD 9
G +L S GES WLR+ ++FS L+ H ++AIDFLF+AQ++ CEWISM G +VSLSD
Sbjct: 582 SNGELLCSFGESSWLRSRAGSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSD 641
Query: 8 IY 3
IY
Sbjct: 642 IY 643
Score = 115 bits (289), Expect(2) = e-175
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -1
Query: 1885 LRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGTI 1706
L+GI+F++LT+ +IEK S I+ ++VT P LG PN +CSTC G++ KNCDGH G I
Sbjct: 16 LKGIQFNVLTEEDIEKCSVTAIDAANEVTDPRLGFPNPLSQCSTCGGKNLKNCDGHIGII 75
Query: 1705 KLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
K + +P+FI E +QILN +CPGC+SVRHD
Sbjct: 76 KFAVNVLNPFFISETVQILNSICPGCRSVRHD 107
>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Cucumis sativus] gi|778675671|ref|XP_011650448.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Cucumis sativus]
gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
gi|700200830|gb|KGN55963.1| hypothetical protein
Csa_3G039340 [Cucumis sativus]
Length = 1483
Score = 527 bits (1358), Expect(2) = e-172
Identities = 274/541 (50%), Positives = 361/541 (66%), Gaps = 12/541 (2%)
Frame = -3
Query: 1589 MENWTSAYHLPMSCKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNP 1416
+E+ TS Y+ P C+YC + DWYP M+FK S+ D+F K I VEV EN+ KK++ +
Sbjct: 128 VEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVA 187
Query: 1415 HKILPEDYWDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLS 1236
LP DYWDFIPKD ++E+ + P + L QV LLK++DPKF++KFV +SLFL+
Sbjct: 188 KGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLN 247
Query: 1235 SIPVTPNCNRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRT 1056
S PVTPN +RV E H F++G RL FDERTRAY+++VDF E G
Sbjct: 248 SFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELG------------- 294
Query: 1055 SDRVLDCLNVXXXXXXXXXXXXXXS----------CKSGLKWIKEVLLGKRTDYAFRMTV 906
RVLDCL + SGL+WIK+V+LGKR+D+ FRM V
Sbjct: 295 -SRVLDCLKISKLSPEKLQNKDLVYQQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVV 353
Query: 905 VGDPKIGLGEIGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSM 726
VGDP I L EIGIP ++E +QISE+++S N+ L+T C L L++ G+ Y + +G L +
Sbjct: 354 VGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRV 413
Query: 725 HHTDKLQIGNTLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFL 546
+ +L +G+T+YRPL DGD+VL+NRPPS+HQHSLIA +VK LPV +V+SLNPLCC+PF
Sbjct: 414 RNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFR 473
Query: 545 GDFDGDCLHGYVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDV 366
GDFDGDCLHGYVPQS+ +RVE++ELVS L LS DSLTAA+L+ V
Sbjct: 474 GDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGV 533
Query: 365 FLNKFQMQQLEMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIR 186
LN FQMQQL+M +L PAI+K+PLL++ WTGKQLFS+LLP FD+ S S V I
Sbjct: 534 SLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSSPSHNVFIE 593
Query: 185 KGNILYSSGESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDI 6
KG ++ S G S WLR+SG N+F +LI+HC K +D+L AQ +LCEW+S RGL+VSLSD+
Sbjct: 594 KGELISSEG-SYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDL 652
Query: 5 Y 3
Y
Sbjct: 653 Y 653
Score = 108 bits (270), Expect(2) = e-172
Identities = 45/93 (48%), Positives = 63/93 (67%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
LL GI F + +IE + ++ ++V+ P LG+PN +++C+TC K C+GHFG
Sbjct: 31 LLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKFCEGHFGV 90
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IK P TI HPYF+ E+ Q+LNKVCPGCKSVR +
Sbjct: 91 IKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQE 123
>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Cucumis melo]
Length = 1489
Score = 526 bits (1355), Expect(2) = e-171
Identities = 274/545 (50%), Positives = 362/545 (66%), Gaps = 16/545 (2%)
Frame = -3
Query: 1589 MENWTSAYHLPMSCKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNP 1416
+E+ TS Y+ P C+YC + DWYP M+FK S+ D+F K I VEV EN+ KK++ +
Sbjct: 128 VEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVA 187
Query: 1415 HKILPEDYWDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLS 1236
LP DYWDFIPKD ++E+ + P + L QV LLK++DPKF++KFV +SLFL+
Sbjct: 188 KGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLN 247
Query: 1235 SIPVTPNCNRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRT 1056
S PVTPN +RV E H F++G RL FDERTRAY+++VDF E G
Sbjct: 248 SFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELG------------- 294
Query: 1055 SDRVLDCLNVXXXXXXXXXXXXXXS--------------CKSGLKWIKEVLLGKRTDYAF 918
RVLDCL + SGL+WIK+V+LGKR+D+ F
Sbjct: 295 -SRVLDCLKISKAIYKIFPREVTKXRFGLPAKKIKDTATSSSGLRWIKDVVLGKRSDHCF 353
Query: 917 RMTVVGDPKIGLGEIGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGH 738
RM VVGDP I L EIGIP ++E +QISE+++S N+ L+T C L L++ G+ Y + +G
Sbjct: 354 RMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGR 413
Query: 737 LFSMHHTDKLQIGNTLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCC 558
L + + +L +G+T+YRPL DGD+VL+NRPPS+HQHSLIA +VK LPV +V+SLNPLCC
Sbjct: 414 LVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCC 473
Query: 557 APFLGDFDGDCLHGYVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMT 378
+PF GDFDGDCLHGYVPQS+ +RVE++ELVS L LS DSLTAA+L+
Sbjct: 474 SPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQSGRNLLSLSHDSLTAAHLIL 533
Query: 377 NSDVFLNKFQMQQLEMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDT 198
V LN FQMQQL+M +L PAI+K+PLL++ WTGKQLFS+LLP F++ S S
Sbjct: 534 EDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFEYSSPSHN 593
Query: 197 VLIRKGNILYSSGESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVS 18
V I KG ++ S G S WLR+SG N+F +LI+HC K +D+L AQ +LCEW+SMRGL+VS
Sbjct: 594 VFIEKGELISSEG-SYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSMRGLSVS 652
Query: 17 LSDIY 3
LSD+Y
Sbjct: 653 LSDLY 657
Score = 106 bits (264), Expect(2) = e-171
Identities = 43/92 (46%), Positives = 61/92 (66%)
Frame = -1
Query: 1885 LRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGTI 1706
L GI F + +IE + ++ +V+ P LG+PN +++C+TC K C+GHFG I
Sbjct: 32 LTGINFSVSNQQDIENIAVITVDAASEVSDPKLGLPNPSYQCTTCGASSLKFCEGHFGVI 91
Query: 1705 KLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
K P TI HPYF+ E+ Q+LNKVCPGCKS+R +
Sbjct: 92 KFPYTIIHPYFLSEVAQVLNKVCPGCKSIRQE 123
>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X1 [Gossypium raimondii]
gi|763758424|gb|KJB25755.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
gi|763758426|gb|KJB25757.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
Length = 1481
Score = 516 bits (1329), Expect(2) = e-170
Identities = 271/530 (51%), Positives = 348/530 (65%), Gaps = 14/530 (2%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC+ NS +WYP M+FK +SK+LF K I VEV+EN K K + LP DYWDFIP
Sbjct: 128 CKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVR-KRGRQALPADYWDFIP 186
Query: 1376 KDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVME 1197
KD ++E+ V P + L QV LLK+++P+FI+KF+S +S+FL+ PVTPN +RV E
Sbjct: 187 KDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTE 246
Query: 1196 TMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXXX 1017
MH ++ RL FDERTR Y++LVDF E S VL+CL +
Sbjct: 247 IMHTSSNAQRLIFDERTRVYKKLVDFRGLANEL--------------SSHVLECLKISKL 292
Query: 1016 XXXXXXXXXXXSCK------------SGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEI 873
SGL+++K+V+LGKR D+ FRM + G+P + L EI
Sbjct: 293 HVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEI 352
Query: 872 GIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNT 693
GIP ++E +QI+E +N N + L T CNLR+L+ G+ + +G L + H +K+Q+G+T
Sbjct: 353 GIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDT 412
Query: 692 LYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGY 513
+YRPL DGD VLINRPPS+HQHSLIA +VK LPV SV+S+NPL C+PF GDFDGDCLHGY
Sbjct: 413 IYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGY 472
Query: 512 VPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLE 333
VPQSIN+RVEL ELVS L LS DSLTAAYL+ V LN FQMQQLE
Sbjct: 473 VPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLE 532
Query: 332 MFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGES 153
MFCP PAI+KAPLL +P+WTGKQLFSML P FD+ A V+I G+++ SS S
Sbjct: 533 MFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGS 592
Query: 152 IWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
WLR++ N+F SLIKH K +DFL +AQE+LCEW+SMRGL+VSL D+Y
Sbjct: 593 SWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLY 642
Score = 112 bits (279), Expect(2) = e-170
Identities = 49/94 (52%), Positives = 63/94 (67%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
A L GIKF + DA+ E S I +V+ P LG PN + C+TC+ RD K C+GHFG
Sbjct: 17 AFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCTTCDARDMKQCEGHFG 76
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IK P TI HP+F+ E++ ILNK+CPGCKS+R D
Sbjct: 77 VIKFPYTILHPFFLSEVVHILNKICPGCKSIRKD 110
>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 516 bits (1329), Expect(2) = e-170
Identities = 271/530 (51%), Positives = 348/530 (65%), Gaps = 14/530 (2%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC+ NS +WYP M+FK +SK+LF K I VEV+EN K K + LP DYWDFIP
Sbjct: 125 CKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVR-KRGRQALPADYWDFIP 183
Query: 1376 KDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVME 1197
KD ++E+ V P + L QV LLK+++P+FI+KF+S +S+FL+ PVTPN +RV E
Sbjct: 184 KDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTE 243
Query: 1196 TMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXXX 1017
MH ++ RL FDERTR Y++LVDF E S VL+CL +
Sbjct: 244 IMHTSSNAQRLIFDERTRVYKKLVDFRGLANEL--------------SSHVLECLKISKL 289
Query: 1016 XXXXXXXXXXXSCK------------SGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEI 873
SGL+++K+V+LGKR D+ FRM + G+P + L EI
Sbjct: 290 HVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEI 349
Query: 872 GIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNT 693
GIP ++E +QI+E +N N + L T CNLR+L+ G+ + +G L + H +K+Q+G+T
Sbjct: 350 GIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDT 409
Query: 692 LYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGY 513
+YRPL DGD VLINRPPS+HQHSLIA +VK LPV SV+S+NPL C+PF GDFDGDCLHGY
Sbjct: 410 IYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGY 469
Query: 512 VPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLE 333
VPQSIN+RVEL ELVS L LS DSLTAAYL+ V LN FQMQQLE
Sbjct: 470 VPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLE 529
Query: 332 MFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGES 153
MFCP PAI+KAPLL +P+WTGKQLFSML P FD+ A V+I G+++ SS S
Sbjct: 530 MFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGS 589
Query: 152 IWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
WLR++ N+F SLIKH K +DFL +AQE+LCEW+SMRGL+VSL D+Y
Sbjct: 590 SWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLY 639
Score = 112 bits (279), Expect(2) = e-170
Identities = 49/94 (52%), Positives = 63/94 (67%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
A L GIKF + DA+ E S I +V+ P LG PN + C+TC+ RD K C+GHFG
Sbjct: 14 AFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCTTCDARDMKQCEGHFG 73
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IK P TI HP+F+ E++ ILNK+CPGCKS+R D
Sbjct: 74 VIKFPYTILHPFFLSEVVHILNKICPGCKSIRKD 107
>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Gossypium raimondii]
Length = 1300
Score = 516 bits (1329), Expect(2) = e-170
Identities = 271/530 (51%), Positives = 348/530 (65%), Gaps = 14/530 (2%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC+ NS +WYP M+FK +SK+LF K I VEV+EN K K + LP DYWDFIP
Sbjct: 128 CKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVR-KRGRQALPADYWDFIP 186
Query: 1376 KDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVME 1197
KD ++E+ V P + L QV LLK+++P+FI+KF+S +S+FL+ PVTPN +RV E
Sbjct: 187 KDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTE 246
Query: 1196 TMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXXX 1017
MH ++ RL FDERTR Y++LVDF E S VL+CL +
Sbjct: 247 IMHTSSNAQRLIFDERTRVYKKLVDFRGLANEL--------------SSHVLECLKISKL 292
Query: 1016 XXXXXXXXXXXSCK------------SGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEI 873
SGL+++K+V+LGKR D+ FRM + G+P + L EI
Sbjct: 293 HVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEI 352
Query: 872 GIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNT 693
GIP ++E +QI+E +N N + L T CNLR+L+ G+ + +G L + H +K+Q+G+T
Sbjct: 353 GIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDT 412
Query: 692 LYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGY 513
+YRPL DGD VLINRPPS+HQHSLIA +VK LPV SV+S+NPL C+PF GDFDGDCLHGY
Sbjct: 413 IYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGY 472
Query: 512 VPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLE 333
VPQSIN+RVEL ELVS L LS DSLTAAYL+ V LN FQMQQLE
Sbjct: 473 VPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLE 532
Query: 332 MFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGES 153
MFCP PAI+KAPLL +P+WTGKQLFSML P FD+ A V+I G+++ SS S
Sbjct: 533 MFCPNHSPLPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGS 592
Query: 152 IWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
WLR++ N+F SLIKH K +DFL +AQE+LCEW+SMRGL+VSL D+Y
Sbjct: 593 SWLRDADGNLFQSLIKHYQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLY 642
Score = 112 bits (279), Expect(2) = e-170
Identities = 49/94 (52%), Positives = 63/94 (67%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
A L GIKF + DA+ E S I +V+ P LG PN + C+TC+ RD K C+GHFG
Sbjct: 17 AFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHCTTCDARDMKQCEGHFG 76
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IK P TI HP+F+ E++ ILNK+CPGCKS+R D
Sbjct: 77 VIKFPYTILHPFFLSEVVHILNKICPGCKSIRKD 110
>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
Length = 1453
Score = 504 bits (1298), Expect(2) = e-168
Identities = 264/537 (49%), Positives = 347/537 (64%), Gaps = 13/537 (2%)
Frame = -3
Query: 1574 SAYHLPMSCKYCLPNSSDWYPAMKFK-SSKDLFGKKITV-EVNENLPKKFESKNPHKILP 1401
S +L CKYC+ N+ YP MKF SS+++F K + + +++E P+ + K L
Sbjct: 115 SKENLHKGCKYCVGNTIGGYPTMKFSVSSEEIFRKNVIIAKISERPPQNSHKRGRKKRLA 174
Query: 1400 EDYWDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVT 1221
DYWD IPKD ++E+ + P + L QV LLK++DP FI+KFV + +S+FL+ PVT
Sbjct: 175 ADYWDIIPKDEQQEENTLRPNQRVLTHAQVRHLLKDVDPNFIKKFVLKTDSIFLNCFPVT 234
Query: 1220 PNCNRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVL 1041
PNC+RV E H F++G RL FDERTRAY++LVDF KE S RVL
Sbjct: 235 PNCHRVTEVTHAFSNGQRLVFDERTRAYKKLVDFRGTAKEL--------------SFRVL 280
Query: 1040 DCLNVXXXXXXXXXXXXXXSC-----------KSGLKWIKEVLLGKRTDYAFRMTVVGDP 894
DCL SGL+W+K+V+LGKR D +FRM VVGDP
Sbjct: 281 DCLKTSKLNPDNSVNNDDMYALQRKINDSASNSSGLRWVKDVVLGKRNDNSFRMVVVGDP 340
Query: 893 KIGLGEIGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTD 714
I L EIGIP I+E +Q+SE++ N + L T C +RLL+ G+ + + +G+L + T
Sbjct: 341 NIKLSEIGIPCHIAERLQVSEHLTKWNRERLTTCCEVRLLEKGEMHVRREGNLVRVRRTK 400
Query: 713 KLQIGNTLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFD 534
L+IG+ +YRPL DGD VLINRPPS+HQHSLIA +VK LP + +++NPLCC PF GDFD
Sbjct: 401 DLRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPAAAALAINPLCCPPFRGDFD 460
Query: 533 GDCLHGYVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNK 354
GDCLHGYVPQS+++R EL ELV+ L L+QDSL AA+L+ VFL+
Sbjct: 461 GDCLHGYVPQSVDTRAELCELVALDKQLTNVQSGRNLLSLNQDSLVAAHLVMEDGVFLSL 520
Query: 353 FQMQQLEMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNI 174
F+MQQL+MFCPR+L PAI+KAPL WTGKQL SMLLP FD S+ V IR G +
Sbjct: 521 FEMQQLQMFCPRQLLSPAIVKAPLPNDCAWTGKQLVSMLLPRGFDHDFPSNNVYIRDGEL 580
Query: 173 LYSSGESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
+ S G S WLR++ N+F SLIKHC S+ +DFL +AQE+LCEW+SMRGL+VSLSD+Y
Sbjct: 581 ISSEG-SFWLRDTDGNLFQSLIKHCQSQVLDFLCTAQEVLCEWLSMRGLSVSLSDLY 636
Score = 117 bits (292), Expect(2) = e-168
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
ALL + F I T+AE EK S I+ +VT P LG+PN +++CSTC +D+K C+GHFG
Sbjct: 14 ALLTALSFGISTEAEKEKLSVLAIDAVGEVTDPKLGLPNPSFRCSTCGSKDSKFCEGHFG 73
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IK P TI HPY++ E+++ILNKVCPGCKS+R +
Sbjct: 74 VIKFPFTIVHPYYLSEVVKILNKVCPGCKSIRKE 107
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 509 bits (1311), Expect(2) = e-167
Identities = 269/541 (49%), Positives = 349/541 (64%), Gaps = 14/541 (2%)
Frame = -3
Query: 1583 NWTSAYHLPMSCKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHK 1410
N S + CKYC+ NS DWYP M FK SSKDLF K I VEV+E K K +
Sbjct: 117 NSVSKVNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVR-KRGKQ 175
Query: 1409 ILPEDYWDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSI 1230
LP DYWDFIPKD ++E+ + P + L QV LLK++DP+FI+KFV +S+FL+
Sbjct: 176 ALPSDYWDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCF 235
Query: 1229 PVTPNCNRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSD 1050
PVTPN +RV E MH ++G RL FD+RTR Y++L DF I S
Sbjct: 236 PVTPNSHRVTEIMHASSNGQRLIFDQRTRVYKKLADF--------------RGIANELSS 281
Query: 1049 RVLDCLNVXXXXXXXXXXXXXXSC------------KSGLKWIKEVLLGKRTDYAFRMTV 906
VL+CL + SGL+++K+V+LGKR D+ FRM +
Sbjct: 282 HVLECLKISKLHLEKPSNEESALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVL 341
Query: 905 VGDPKIGLGEIGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSM 726
G+P + L EI IP ++E +QI+E +N+ N + L C+LRLL+ G+ + + +G L +
Sbjct: 342 TGNPNLKLSEISIPCHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRI 401
Query: 725 HHTDKLQIGNTLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFL 546
H +KLQ+G+T++RPL +GD++LINRPPS+HQHSLIA +VK LPV SV+S+NPL C+PF
Sbjct: 402 RHNEKLQVGDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFR 461
Query: 545 GDFDGDCLHGYVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDV 366
GDFDGDCLHGYVPQSI +RVEL ELVS L LS DSLTAAYL+ V
Sbjct: 462 GDFDGDCLHGYVPQSIKARVELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGV 521
Query: 365 FLNKFQMQQLEMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIR 186
LN FQMQQLEMFCP PAI+KAPLL+S +WTGKQL SML P FD+ + V+IR
Sbjct: 522 LLNLFQMQQLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIR 581
Query: 185 KGNILYSSGESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDI 6
G ++ SS S WLR++ N+F SLIKH K +DFL++AQE+LCEW+SMRGL+VSLSD+
Sbjct: 582 NGELISSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDL 641
Query: 5 Y 3
Y
Sbjct: 642 Y 642
Score = 108 bits (269), Expect(2) = e-167
Identities = 47/94 (50%), Positives = 62/94 (65%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
A + GI+F++ D + EK S I +V+ P LG PN + C+TC D K+C+GHFG
Sbjct: 17 AFVTGIRFNVSNDRDNEKMSVMEIAAPSEVSDPKLGFPNFSNHCTTCGAADMKHCEGHFG 76
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
I P I HPYF+ E++QILNK+CPGCKSVR D
Sbjct: 77 VINFPYAILHPYFLSEVVQILNKICPGCKSVRKD 110
>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Prunus mume]
Length = 1452
Score = 504 bits (1297), Expect(2) = e-166
Identities = 272/531 (51%), Positives = 348/531 (65%), Gaps = 12/531 (2%)
Frame = -3
Query: 1559 PMSCKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWD 1386
P C+ + SS +P MKFK S+++LF + I E N ILP DYWD
Sbjct: 121 PXDCR--INGSSINFPRMKFKVSTRELFKRSAIIAEANG-------------ILPADYWD 165
Query: 1385 FIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNR 1206
FIPKD ++++ + P K L QV LLK++DPKFIEK V + NSLF+ S VTPNC+R
Sbjct: 166 FIPKDAQQDESCMKPNKRVLSHAQVHYLLKDVDPKFIEKIVPKTNSLFMGSFLVTPNCHR 225
Query: 1205 VMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNV 1026
V E MH F++G RL FDERTRAYR+LVDF E G RVLDCL +
Sbjct: 226 VTEVMHSFSNGQRLMFDERTRAYRKLVDFKGVANELG--------------SRVLDCLKI 271
Query: 1025 XXXXXXXXXXXXXXSCK----------SGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGE 876
+ + SGL+WIK+V+LGKR+D+ FR VVGDP I L E
Sbjct: 272 SKLNSEKPSKDFISAQQKNIKDDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSE 331
Query: 875 IGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGN 696
IGIP I+E +QISE +N N++ L+ CNLRL+ G+ + + KG L + TD+LQ+G+
Sbjct: 332 IGIPCQIAERLQISENLNRWNIEKLDASCNLRLMVKGEMHVRRKGSLVWVRRTDELQMGD 391
Query: 695 TLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHG 516
T+YRPL DGD+VLINRPPS+HQHSLIA +VK LP+ SV+S+NPLCC+PF GDFDGDCLHG
Sbjct: 392 TIYRPLSDGDIVLINRPPSIHQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHG 451
Query: 515 YVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQL 336
Y+PQS ++RVEL+ELV+ L LSQDSLTAA+L+ LN +MQQL
Sbjct: 452 YIPQSNDARVELRELVALDKQLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQL 511
Query: 335 EMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGE 156
EMFC L PA++KAP L S WTGKQ+FSMLLP FD+ ASD V I+ G +L S G
Sbjct: 512 EMFCWDVLPSPAVIKAPSLNSHAWTGKQVFSMLLPSDFDYDFASDGVYIKNGELLSSEGS 571
Query: 155 SIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
S WLR++G N+F SL+ H + +DFLF+AQE+LCEW+SMRGL+VSL+D+Y
Sbjct: 572 S-WLRDTGGNLFQSLVNHFQGQVLDFLFAAQEVLCEWLSMRGLSVSLADLY 621
Score = 112 bits (280), Expect(2) = e-166
Identities = 48/98 (48%), Positives = 66/98 (67%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
L+ GI ++ T +IE S K I+ +VT P LG+PN +++CSTC K C+GHFG
Sbjct: 15 LITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSFQCSTCGAEKLKCCEGHFGD 74
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVRHDRETQV 1595
IK P TI HPY++ E+ QILNK+CPGCKS+R + +V
Sbjct: 75 IKFPCTILHPYYLSEVAQILNKICPGCKSIRQNLRAKV 112
>ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Phoenix
dactylifera]
Length = 1567
Score = 583 bits (1504), Expect = e-163
Identities = 290/524 (55%), Positives = 384/524 (73%), Gaps = 7/524 (1%)
Frame = -3
Query: 1553 SCKYCLPNSSDWYPAMKFKS-SKDLFGKK---ITVEVNENLPKKFESKNPHKILPEDYWD 1386
+CKYC N++DWYPA+KFK SKD+ GKK + EVN+ LPKKF++K+ +LP+D+W
Sbjct: 185 TCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDVLPQDFWS 244
Query: 1385 FIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNR 1206
F+P ++++ + +IT+ PYQ F LLKELDP+FI++F RR+ LFLS +PV+PNC+R
Sbjct: 245 FVPTFSQQQESNA--NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSYLPVSPNCHR 302
Query: 1205 VMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGP---FTPLDADIPYRTSDRVLDC 1035
V+ET HV ADGP+L+FD+ T+AY+RLVD +++ E+ F PL + RVLDC
Sbjct: 303 VVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATSF---ITSRVLDC 359
Query: 1034 LNVXXXXXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDI 855
LNV C SGLKW+KEV+L KR+D FRMT+VGDPKI LG+IGIP DI
Sbjct: 360 LNVSKLRARNSSNGDSS-CLSGLKWLKEVVLSKRSDNVFRMTMVGDPKIKLGQIGIPFDI 418
Query: 854 SENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLV 675
S+NM ISE+VN+ NL+ LN CNL LL + + +SKG L S+ +++LQ+G+T+YRPL
Sbjct: 419 SQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRKSNQLQVGDTIYRPLE 478
Query: 674 DGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSIN 495
+ DL+L+NRPPSVHQHSLIA +VK LP++SV+S+NPLCCAP LGDFDGDCLHGYVPQS++
Sbjct: 479 NDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGDFDGDCLHGYVPQSVH 538
Query: 494 SRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPRE 315
RVEL ELVS + LS DSLTAA+L+TNS VFLNKF+MQQ EM CP +
Sbjct: 539 CRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFLNKFEMQQFEMLCPSQ 598
Query: 314 LQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNS 135
P+I+KAP +SPLWTG+QLFSMLLP + DF S+ + I KG +L +SG S WL+N+
Sbjct: 599 SPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKGEVLSTSGASFWLQNT 658
Query: 134 GDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
++FSS+ K KA+DFLFSAQE+LCE+++ RGL+VSL D+Y
Sbjct: 659 TSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVY 702
Score = 115 bits (289), Expect = 9e-23
Identities = 50/93 (53%), Positives = 70/93 (75%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
LL GI+FDILTD +IEK I ++DVT LG+PN + +C TC ++T++C+GH G
Sbjct: 15 LLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTCGSKNTRDCEGHVGL 74
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IKLP TI+HPYF+ E++QILN++CPGC S++ D
Sbjct: 75 IKLPRTIYHPYFVTEVIQILNQICPGCMSIKGD 107
>ref|XP_010053343.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324654|ref|XP_010053344.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324662|ref|XP_010053345.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324668|ref|XP_010053346.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324674|ref|XP_010053347.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324680|ref|XP_010053348.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|702324687|ref|XP_010053349.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Eucalyptus
grandis] gi|629112658|gb|KCW77618.1| hypothetical protein
EUGRSUZ_D01929 [Eucalyptus grandis]
Length = 1473
Score = 486 bits (1250), Expect(2) = e-162
Identities = 251/535 (46%), Positives = 339/535 (63%), Gaps = 13/535 (2%)
Frame = -3
Query: 1568 YHLPMSCKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPED 1395
+H CKYCLP D+YP MKFK SSKDLF + I VEV+E+ + + K +I P D
Sbjct: 119 HHGTRGCKYCLPTQVDYYPPMKFKVSSKDLFRRTAIIVEVDESF-RNTQKKLNRRIWPSD 177
Query: 1394 YWDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPN 1215
YWDFIPK+P +E+ + P + L QV+ LL +DP FI KF+SR++SLFL+ PVTPN
Sbjct: 178 YWDFIPKNPEQEESSLKPNRRVLSHAQVYHLLNGVDPTFIRKFISRQDSLFLNCFPVTPN 237
Query: 1214 CNRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDC 1035
+RV E H F+ G RL D+RTR Y++LVDF E G RVL+C
Sbjct: 238 GHRVTEATHAFSHGQRLVLDDRTRVYKKLVDFRGTANELG--------------SRVLEC 283
Query: 1034 LNVXXXXXXXXXXXXXXSCK-----------SGLKWIKEVLLGKRTDYAFRMTVVGDPKI 888
L V + SGL+W+K+V+LGKR+DY FRM V G+P I
Sbjct: 284 LKVSKLNPDKLSNTESAFAQNRKSRDLDFTSSGLRWMKDVVLGKRSDYCFRMVVTGNPNI 343
Query: 887 GLGEIGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKL 708
L EIG+P I+E +Q+SE +N N + LN +C+L LL+ G + KG L + H +L
Sbjct: 344 KLSEIGVPCHIAERLQVSETLNKWNCEKLNAVCSLLLLERGGMLVRRKGRLVRISHMKEL 403
Query: 707 QIGNTLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGD 528
G+T+YRPL DGD+VL+NRPPS+HQHS +A + K LP+ S +S+NPLCC+P GDFDGD
Sbjct: 404 LFGDTIYRPLSDGDMVLVNRPPSIHQHSHLALSAKVLPIASALSINPLCCSPLRGDFDGD 463
Query: 527 CLHGYVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQ 348
C+HGY+PQS+++RVEL+ELV L L QDSL AA+L+ V N+F
Sbjct: 464 CIHGYIPQSVDARVELRELVGVDRQLYNGQSGRNLLSLGQDSLVAAHLILEDSVCFNRFD 523
Query: 347 MQQLEMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILY 168
+QQL+M CP +L P P ++ +WTGKQLF MLLP F++FS+S+ + I G I++
Sbjct: 524 IQQLKMLCPNDLLPP----VPSVEGGMWTGKQLFQMLLPRGFEWFSSSNDIGISNGEIVF 579
Query: 167 SSGESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
S G S WLR++ DN+F LI C S+ ++ L +AQE+LCEW+SMRG +VSLSD+Y
Sbjct: 580 SEG-SAWLRDADDNLFQRLITFCQSRVLNILHAAQEVLCEWLSMRGFSVSLSDLY 633
Score = 117 bits (292), Expect(2) = e-162
Identities = 52/109 (47%), Positives = 76/109 (69%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
A+L G+ F++L+ E EK S+ IE+ +V+ LG+PN + +CSTC +D K C+GHFG
Sbjct: 14 AVLTGVVFNVLSCREAEKISSITIESVGEVSDSRLGLPNSSGQCSTCGAKDLKQCEGHFG 73
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHDRETQVH*WRTGPQHI 1565
+IKLP TI HPYF+ E+ ++LNK+CPGCKSVR D + ++GP +
Sbjct: 74 SIKLPCTILHPYFLSEVAKLLNKICPGCKSVRQDLRVK----KSGPGQV 118
>ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
guineensis]
Length = 1569
Score = 573 bits (1476), Expect = e-160
Identities = 285/524 (54%), Positives = 386/524 (73%), Gaps = 7/524 (1%)
Frame = -3
Query: 1553 SCKYCLPNSSDWYPAMKFKS-SKDLFGKK---ITVEVNENLPKKFESKNPHKILPEDYWD 1386
+CKYC N+++WYPA+KFK SKD+ GKK I EVNE LPKKF++K+ +LP+D+W
Sbjct: 185 TCKYCARNATNWYPAVKFKLFSKDMLGKKSLSIIAEVNEKLPKKFQNKSLCDVLPQDFWS 244
Query: 1385 FIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNR 1206
F+P ++++ + +IT+ PYQ F LLKELDP+FI++F RR+ LFLS +PV PNC+R
Sbjct: 245 FVPSFSQQQESNA--NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSYLPVAPNCHR 302
Query: 1205 VMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGP---FTPLDADIPYRTSDRVLDC 1035
V+ET +V ADGP+L+FDERT+AY+RLVD ++++E+ F PL ++RVLDC
Sbjct: 303 VVETSYVHADGPQLSFDERTKAYKRLVDISRKIEEFRQHQQFVPLATSF---ITNRVLDC 359
Query: 1034 LNVXXXXXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDI 855
LNV C SGLKW+K+V+L KR+D AFRMT++GDPKI LG+IGIP D+
Sbjct: 360 LNVSKLRTRNSSNGDSS-CLSGLKWLKDVVLSKRSDNAFRMTMIGDPKIKLGQIGIPFDL 418
Query: 854 SENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLV 675
S+N+ +SE+VN+ NL+ LN CNL LL + + + +SKG L S+ +++LQIG+T+YRPL
Sbjct: 419 SQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRLTSVRKSNQLQIGDTIYRPLE 478
Query: 674 DGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSIN 495
+GDL+L+NRPPSVHQHSLIA + K LP++SV+S+NPLCCAP LGDFDGDCLHGYVPQS++
Sbjct: 479 NGDLILVNRPPSVHQHSLIALSAKILPIQSVVSINPLCCAPLLGDFDGDCLHGYVPQSVH 538
Query: 494 SRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPRE 315
RVEL ELVS + LS DSLTAA+L+T++ VFLNKF+MQQLEM C
Sbjct: 539 CRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTSNIVFLNKFEMQQLEMLCFSR 598
Query: 314 LQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNS 135
L P+I+KAP + PLWTG+QLFSM+LP + DF + + I KG +L +SG S WL+N+
Sbjct: 599 LPFPSIIKAPTTRFPLWTGQQLFSMVLPPAMDFSMGPNKIQISKGEVLSTSGVSSWLQNT 658
Query: 134 GDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
++FSS+ K KA+DFLFSAQE+LCE+++ RGL+VSL D+Y
Sbjct: 659 TSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVY 702
Score = 116 bits (290), Expect = 7e-23
Identities = 51/93 (54%), Positives = 69/93 (74%)
Frame = -1
Query: 1888 LLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGT 1709
LL GI FDILTD +IEK I ++DVT LG+PN + +C TC R+T++C+GH G
Sbjct: 15 LLTGITFDILTDDDIEKICHVSIVESNDVTNAKLGLPNASSRCQTCGSRNTRDCEGHVGF 74
Query: 1708 IKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IKLP TI+HPYF+ E++QILN++CPGC S++ D
Sbjct: 75 IKLPRTIYHPYFVTEVIQILNQICPGCMSIKGD 107
>ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
raimondii]
Length = 1485
Score = 493 bits (1268), Expect(2) = e-160
Identities = 265/532 (49%), Positives = 342/532 (64%), Gaps = 16/532 (3%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC+ NS DWYP M FK SSK+L K I VEV+E+ K + LP DYWDFIP
Sbjct: 133 CKYCVGNSIDWYPPMTFKISSKELSKKSTIVVEVSED-SLMMVRKRGRQALPADYWDFIP 191
Query: 1376 KDPREEKWHVI-PRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVM 1200
KD +EE+ ++ PR+ L QV LLK++DP+FI+KF+ +S+FL+ PVTPN +RV
Sbjct: 192 KDQQEEEDGLMKPRRRVLSHAQVHYLLKDVDPEFIKKFIQNVDSIFLNCFPVTPNSHRVT 251
Query: 1199 ETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCLNVXX 1020
E H ++ RL FDERTR Y+RLVDF E S VL+CL +
Sbjct: 252 EITHRSSNSQRLIFDERTRLYKRLVDFRGVANEL--------------SSHVLECLKISK 297
Query: 1019 XXXXXXXXXXXXSC------------KSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGE 876
SGL+++K VLLGKR D+ FRM + G+P + L E
Sbjct: 298 LFQEKPSNEDNELILALTRNKDPVSNMSGLRYMKNVLLGKRNDHCFRMVLTGNPSLKLSE 357
Query: 875 IGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGN 696
IGIP ++E +QI+E +N N + L CNLR+L+ G+ + +G L +HH +K+++G+
Sbjct: 358 IGIPCPVAERLQIAEQLNKWNEERLKACCNLRILEKGEICIRREGTLVRIHHNEKIRLGD 417
Query: 695 TLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHG 516
+YRPL +GD+VLINRPPS+HQHS IA +VK LPV S +S+NPL C+PF GDFDGDCLHG
Sbjct: 418 IIYRPLNNGDIVLINRPPSIHQHSFIALSVKVLPVSSSVSINPLICSPFRGDFDGDCLHG 477
Query: 515 YVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQL 336
YVPQSIN+RVEL ELVS L LS DSL+AAYL+ V LN ++MQQL
Sbjct: 478 YVPQSINTRVELSELVSLNRQLINGQSGRNLLSLSHDSLSAAYLVNGDGVLLNLYEMQQL 537
Query: 335 EMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDF-FSASDTVLIRKGNILYSSG 159
EMFCP PAI+KAPLL +P+WTGKQLFSML P D+ FS SD V IR G ++ SS
Sbjct: 538 EMFCPNRSPSPAIIKAPLLSNPVWTGKQLFSMLFPPELDYGFSPSDLV-IRNGELITSSE 596
Query: 158 ESIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
S W R++ N+F SLIK+C K +DFL AQE+LCEW+SMRG++VSL D+Y
Sbjct: 597 GSSWFRDADGNLFESLIKNCRGKVLDFLHGAQEVLCEWLSMRGMSVSLLDLY 648
Score = 101 bits (251), Expect(2) = e-160
Identities = 45/94 (47%), Positives = 62/94 (65%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
A + GIKF++ D + EK S I + V+ P LG PN C+TC+ RD +C+GHFG
Sbjct: 22 ATMTGIKFNVSGDEDNEKMSVMEIVASSQVSDPKLGFPNLRNHCTTCDARDLGHCEGHFG 81
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHD 1610
IK P I +PY++ E++QILNK+C GCKS+R D
Sbjct: 82 VIKFPYPIINPYYLSEVVQILNKICLGCKSIRKD 115
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 483 bits (1244), Expect(2) = e-160
Identities = 259/519 (49%), Positives = 332/519 (63%), Gaps = 13/519 (2%)
Frame = -3
Query: 1520 WYPAMKFK-SSKDLFGKKITV-EVNENLPKKFESKNPHKILPEDYWDFIPKDPREEKWHV 1347
WYPAMKF SS+++F K + + + +E K + + K L DYWD IPKD ++E+
Sbjct: 130 WYPAMKFSVSSEEIFRKNVIIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQQEENIT 189
Query: 1346 IPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRVMETMHVFADGPR 1167
P + L QV LL+ +DP FI KFV +R+S+FL+ VTPNC+RV E H F++G R
Sbjct: 190 RPNQRVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSNGQR 249
Query: 1166 LTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCL-----------NVXX 1020
L FD+RTRAY+++VDF KE S RVLDCL N
Sbjct: 250 LVFDDRTRAYKKMVDFRGIAKEL--------------SFRVLDCLKTSKINPDKSVNNDD 295
Query: 1019 XXXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDISENMQ 840
S SGL+WIK+V+LGKR D +FRM VVGDP I EIGIP I+E +Q
Sbjct: 296 YMALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQ 355
Query: 839 ISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLVDGDLV 660
ISE++ + N D LNT C +RLL+ G + + +G L + T +L+IG+ +YRPL DGD V
Sbjct: 356 ISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTV 415
Query: 659 LINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSINSRVEL 480
LINRPPS+HQHSLIA +VK LP SV+++NPL CAPF GDFDGDCLHGYVPQS+++RVEL
Sbjct: 416 LINRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVEL 475
Query: 479 QELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPRELQCPA 300
+ELV+ L SQDSL AA+L+ V L+ QMQQL+MFCP +L PA
Sbjct: 476 RELVALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPA 535
Query: 299 ILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNSGDNVF 120
+ KAP L WTGKQL SMLLP FD S V IR G ++ S G S WLR++ N+F
Sbjct: 536 VRKAPSLNGCAWTGKQLISMLLPRGFDHECPSSDVYIRDGELISSEG-SFWLRDTDGNLF 594
Query: 119 SSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
SLIK C + +DFL+ AQE+LCEW+SMRGL+VSLSD+Y
Sbjct: 595 QSLIKQCQDQVLDFLYIAQEVLCEWLSMRGLSVSLSDLY 633
Score = 110 bits (275), Expect(2) = e-160
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
ALL I F + T+AE EK S I+T +VT LG+PN +CSTC +D K+C+GHFG
Sbjct: 15 ALLTAITFGVSTEAEKEKLSVLTIDTVSEVTDSKLGLPNPTNQCSTCGSKDLKSCEGHFG 74
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHDRETQ 1598
IK P TI HPY++ E+++ILN+VCP CKS+R + + +
Sbjct: 75 VIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESKVR 112
>ref|XP_011014513.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940107|ref|XP_011014514.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940109|ref|XP_011014516.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940111|ref|XP_011014517.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940113|ref|XP_011014518.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940115|ref|XP_011014519.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940117|ref|XP_011014520.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica] gi|743940119|ref|XP_011014522.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like [Populus
euphratica]
Length = 1488
Score = 465 bits (1196), Expect(2) = e-157
Identities = 251/531 (47%), Positives = 333/531 (62%), Gaps = 15/531 (2%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC NS WYP MKFK SSK++F K I E+ E L K K KIL DYWD P
Sbjct: 123 CKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNK-PQKGFKKILAADYWDIFP 181
Query: 1376 KDPREEK--WHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRV 1203
KD +EE+ + P + L QV +LK++DP I+ + + N++FL+ PVTPN +RV
Sbjct: 182 KDEQEEEEETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSHRV 241
Query: 1202 METMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCL--- 1032
E H F++G RL FDERTRAY+++VDF + S V+DCL
Sbjct: 242 TEVTHAFSNGQRLIFDERTRAYKKMVDF--------------RGVANTLSFHVMDCLKTS 287
Query: 1031 --------NVXXXXXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGE 876
N+ + SGL+WIK+V+LGKR D++FRM +VGDP + L E
Sbjct: 288 KLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHE 347
Query: 875 IGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGN 696
IGIP I+E +Q+SE + + N + LN + G + + +G+L + H +L++G+
Sbjct: 348 IGIPCHIAERLQVSESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGD 407
Query: 695 TLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHG 516
+YRPL DGD VLINRPPS+HQHSLIA VK LPV SV+++NPLCC PF DFDGDCLHG
Sbjct: 408 IIYRPLNDGDTVLINRPPSIHQHSLIALCVKVLPVPSVLAINPLCCPPFRADFDGDCLHG 467
Query: 515 YVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQL 336
YVPQS+++RVEL ELVS L LSQDSLTAA+L+ DVFL+ F++QQL
Sbjct: 468 YVPQSVDTRVELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQL 527
Query: 335 EMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGE 156
+MF P PA+ KAP + +WTG+QL SMLLP FD S V IR G+++ S G
Sbjct: 528 QMFRPERFLLPAV-KAPSANALVWTGRQLISMLLPVGFDHDFPSCNVCIRDGDLVSSEG- 585
Query: 155 SIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
S WL ++ N+F SL+KHC + +DFL++AQ +LCEW+SMRGL+VSLSD+Y
Sbjct: 586 SFWLWDTDGNLFQSLVKHCHGQVLDFLYAAQRVLCEWLSMRGLSVSLSDLY 636
Score = 120 bits (300), Expect(2) = e-157
Identities = 52/99 (52%), Positives = 72/99 (72%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
AL+ GI F +LT+A++EK S I+ +VT P LG+PN + +C TC RD K+C+GHFG
Sbjct: 14 ALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSSQCPTCGSRDLKSCEGHFG 73
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHDRETQV 1595
I P TI HPYF+ E++QILNK+CPGCKS+R + T++
Sbjct: 74 VINFPYTIVHPYFLSEVVQILNKICPGCKSIRLAKATEL 112
>gb|ERN19396.1| hypothetical protein AMTR_s00069p00150990 [Amborella trichopoda]
Length = 966
Score = 475 bits (1223), Expect(2) = e-157
Identities = 251/507 (49%), Positives = 327/507 (64%), Gaps = 7/507 (1%)
Frame = -3
Query: 1550 CKYCLP---NSSDWYPAMKFKS-SKDLFGKK---ITVEVNENLPKKFESKNPHKILPEDY 1392
CKYC N WYP++KFK ++D GKK I +EV+ LP KF K +++LP+DY
Sbjct: 201 CKYCAKKGFNEKQWYPSLKFKVVTRDFSGKKCLSIMMEVDPRLPAKFHGKALNELLPDDY 260
Query: 1391 WDFIPKDPREEKWHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNC 1212
W+FIP + K L PYQ ++LL+ LDP K+ RR SLFL+S+PVTPN
Sbjct: 261 WEFIPNGLN---FLESSGKRILSPYQAYTLLESLDPGAFSKYAPRRQSLFLNSVPVTPNH 317
Query: 1211 NRVMETMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCL 1032
+RVME+ ++F DGP + D RT A ++L+ Q+ G ++ VLD
Sbjct: 318 HRVMESKNLFTDGPHIMPDNRTMALKKLISASNQLLFMGNLVTTRGNL-------VLDYF 370
Query: 1031 NVXXXXXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGEIGIPLDIS 852
S KW K+ +LGKRT+YAFRMTVVGDPKI LGEIG P DIS
Sbjct: 371 KESKFGGKKLWKAVANGGSSSSKWFKDTVLGKRTNYAFRMTVVGDPKIKLGEIGFPRDIS 430
Query: 851 ENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGNTLYRPLVD 672
EN+ I ++VN NL L + L Q +Y + KG L + H L++G+ +YR L D
Sbjct: 431 ENLMIPQHVNLFNLKMLTSCAYSILQQKTVFYVRRKGDLVPVKHPYDLEVGDVIYRNLRD 490
Query: 671 GDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHGYVPQSINS 492
GDL++INRPPSVHQHSLIAFTV+ L +KSVIS+NPLCC+PF GDFDGDCLHG+VPQSI++
Sbjct: 491 GDLLMINRPPSVHQHSLIAFTVRVLNMKSVISINPLCCSPFFGDFDGDCLHGFVPQSIDN 550
Query: 491 RVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQLEMFCPREL 312
RVELQEL++ + LS DSLTAAYL+T +D FL++FQMQQL+MFCP EL
Sbjct: 551 RVELQELMTLHHQLLNGQDGLPLVSLSHDSLTAAYLVTRNDEFLDQFQMQQLQMFCPSEL 610
Query: 311 QCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGESIWLRNSG 132
PAI K+PL + PLWTG Q FSM LP+S D+ S+ VLI +G +L +SGES WL+NS
Sbjct: 611 PIPAICKSPLSRGPLWTGHQFFSMFLPKSLDYQYVSNGVLISEGELLTTSGESRWLQNSN 670
Query: 131 DNVFSSLIKHCPSKAIDFLFSAQELLC 51
+ +F +++KH P KA+ +L SAQE LC
Sbjct: 671 EGIFFAIVKHVPLKALSYLHSAQEALC 697
Score = 109 bits (273), Expect(2) = e-157
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = -1
Query: 1885 LRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFGTI 1706
L IKF+ +T +IEK S I T VT P LG+P KCSTC D NCDGHFG I
Sbjct: 97 LNAIKFEFMTREDIEKFSVLSISNTSGVTDPQLGLPTPDRKCSTCGASDNLNCDGHFGDI 156
Query: 1705 KLPATIFHPYFIPEILQILNKVCPGCKSVRHDR 1607
+LPATI++PY + ++QILN +CPGCKS+R +
Sbjct: 157 ELPATIYNPYLVHALVQILNNICPGCKSIRQKK 189
>ref|XP_011029161.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852096|ref|XP_011029162.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852100|ref|XP_011029163.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852104|ref|XP_011029164.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852108|ref|XP_011029165.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852112|ref|XP_011029166.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852116|ref|XP_011029168.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852120|ref|XP_011029169.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica] gi|743852124|ref|XP_011029170.1| PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Populus
euphratica]
Length = 1488
Score = 464 bits (1193), Expect(2) = e-157
Identities = 251/531 (47%), Positives = 332/531 (62%), Gaps = 15/531 (2%)
Frame = -3
Query: 1550 CKYCLPNSSDWYPAMKFK-SSKDLFGKK-ITVEVNENLPKKFESKNPHKILPEDYWDFIP 1377
CKYC NS WYP MKFK SSK++F K I E+ E L K K KIL DYWD P
Sbjct: 123 CKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSNK-PQKGFKKILAADYWDIFP 181
Query: 1376 KDPREEK--WHVIPRKITLRPYQVFSLLKELDPKFIEKFVSRRNSLFLSSIPVTPNCNRV 1203
KD +EE+ + P + L QV +LK++DP I+ + + N++FL+ PVTPN +RV
Sbjct: 182 KDEQEEEEETNAKPNRRVLSHSQVRHMLKDVDPNLIKLSILKTNTIFLNCFPVTPNSHRV 241
Query: 1202 METMHVFADGPRLTFDERTRAYRRLVDFGKQVKEYGPFTPLDADIPYRTSDRVLDCL--- 1032
E H F++G RL FD RTRAY+++VDF + S V+DCL
Sbjct: 242 TEVTHAFSNGQRLIFDARTRAYKKMVDF--------------RGVANTLSFHVMDCLKTS 287
Query: 1031 --------NVXXXXXXXXXXXXXXSCKSGLKWIKEVLLGKRTDYAFRMTVVGDPKIGLGE 876
N+ + SGL+WIK+V+LGKR D++FRM +VGDP + L E
Sbjct: 288 KLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVILGKRNDHSFRMVLVGDPNLQLHE 347
Query: 875 IGIPLDISENMQISEYVNSRNLDTLNTLCNLRLLQDGQYYGKSKGHLFSMHHTDKLQIGN 696
IGIP I+E +Q+SE + + N + LN + G + + +G+L + H +L++G+
Sbjct: 348 IGIPCHIAERLQVSESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRHMKELRLGD 407
Query: 695 TLYRPLVDGDLVLINRPPSVHQHSLIAFTVKTLPVKSVISLNPLCCAPFLGDFDGDCLHG 516
+YRPL DGD VLINRPPS+HQHSLIA VK LPV SV+++NPLCC PF DFDGDCLHG
Sbjct: 408 IIYRPLDDGDTVLINRPPSIHQHSLIALCVKVLPVPSVLAINPLCCPPFRADFDGDCLHG 467
Query: 515 YVPQSINSRVELQELVSXXXXXXXXXXXXXXLPLSQDSLTAAYLMTNSDVFLNKFQMQQL 336
YVPQS+++RVEL ELVS L LSQDSLTAA+L+ DVFL+ F++QQL
Sbjct: 468 YVPQSVDTRVELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAHLVLEDDVFLSSFELQQL 527
Query: 335 EMFCPRELQCPAILKAPLLKSPLWTGKQLFSMLLPESFDFFSASDTVLIRKGNILYSSGE 156
+MF P PA+ KAP + +WTGKQL SMLLP FD S V IR G+++ S G
Sbjct: 528 QMFRPERFLLPAV-KAPSANALVWTGKQLISMLLPVGFDHDFPSCNVCIRDGDLVSSEG- 585
Query: 155 SIWLRNSGDNVFSSLIKHCPSKAIDFLFSAQELLCEWISMRGLTVSLSDIY 3
S WL ++ N+F SL+KHC + +DFL++AQ +LCEW+SMRGL+VSLSD+Y
Sbjct: 586 SFWLWDTDGNLFQSLVKHCHGQVLDFLYAAQRVLCEWLSMRGLSVSLSDLY 636
Score = 120 bits (300), Expect(2) = e-157
Identities = 52/99 (52%), Positives = 72/99 (72%)
Frame = -1
Query: 1891 ALLRGIKFDILTDAEIEKDSAKVIETTDDVTGPDLGMPNHAWKCSTCEGRDTKNCDGHFG 1712
AL+ GI F +LT+A++EK S I+ +VT P LG+PN + +C TC RD K+C+GHFG
Sbjct: 14 ALITGIAFGVLTEADMEKLSVLNIDALSEVTNPKLGLPNPSSQCPTCGSRDLKSCEGHFG 73
Query: 1711 TIKLPATIFHPYFIPEILQILNKVCPGCKSVRHDRETQV 1595
I P TI HPYF+ E++QILNK+CPGCKS+R + T++
Sbjct: 74 VINFPYTIVHPYFLSEVVQILNKICPGCKSIRLAKATEL 112