BLASTX nr result
ID: Cinnamomum23_contig00022516
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00022516
(284 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011397368.1| Chlorophyll a-b binding protein of LHCII typ... 103 6e-20
ref|XP_011398059.1| Chlorophyll a-b binding protein of LHCII typ... 100 6e-19
ref|XP_005651417.1| chlorophyll a/b-binding protein [Coccomyxa s... 98 2e-18
ref|WP_043700718.1| hypothetical protein, partial [Nocardia absc... 97 5e-18
ref|WP_043700712.1| hypothetical protein, partial [Nocardia absc... 95 2e-17
ref|XP_005651359.1| major light-harvesting complex II protein m1... 94 4e-17
ref|XP_005650981.1| chlorophyll a/b-binding protein [Coccomyxa s... 92 1e-16
gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. ... 88 3e-15
ref|XP_005644537.1| chlorophyll a/b-binding protein [Coccomyxa s... 86 7e-15
ref|XP_005845510.1| hypothetical protein CHLNCDRAFT_137219 [Chlo... 85 2e-14
ref|XP_005843949.1| hypothetical protein CHLNCDRAFT_59790 [Chlor... 85 2e-14
gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein ... 83 6e-14
ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding pro... 82 1e-13
tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II... 82 1e-13
ref|XP_001693987.1| light-harvesting protein of photosystem II [... 82 2e-13
sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding prot... 81 3e-13
gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein ... 81 3e-13
gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.... 81 3e-13
gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.... 81 3e-13
sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding prot... 80 4e-13
>ref|XP_011397368.1| Chlorophyll a-b binding protein of LHCII type I, chloroplastic
[Auxenochlorella protothecoides]
gi|675352040|gb|KFM24480.1| Chlorophyll a-b binding
protein of LHCII type I, chloroplastic [Auxenochlorella
protothecoides]
Length = 250
Score = 103 bits (256), Expect = 6e-20
Identities = 44/64 (68%), Positives = 52/64 (81%)
Frame = -2
Query: 193 AQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDY 14
A ++ +G+TLR PT G+GTRQVTRAA EFYGP R KWLGPFS ++TPDYL GE+ GDY
Sbjct: 4 AMRATMGTTLRSAVPTAGRGTRQVTRAAAEFYGPNRVKWLGPFSGDSTPDYLKGEYPGDY 63
Query: 13 GWDT 2
GWDT
Sbjct: 64 GWDT 67
>ref|XP_011398059.1| Chlorophyll a-b binding protein of LHCII type I, chloroplastic
[Auxenochlorella protothecoides]
gi|675352728|gb|KFM25168.1| Chlorophyll a-b binding
protein of LHCII type I, chloroplastic [Auxenochlorella
protothecoides]
Length = 252
Score = 99.8 bits (247), Expect = 6e-19
Identities = 44/62 (70%), Positives = 50/62 (80%)
Frame = -2
Query: 187 KSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGW 8
+SF+G+ +R V P GKG RQVTRAAVEFYGP RAK+LGPFSE TP YL GE+ GDYGW
Sbjct: 3 RSFVGTNIRQVVPKAGKGPRQVTRAAVEFYGPNRAKFLGPFSEGVTPSYLKGEYPGDYGW 62
Query: 7 DT 2
DT
Sbjct: 63 DT 64
>ref|XP_005651417.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding
protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 97.8 bits (242), Expect = 2e-18
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = -2
Query: 208 MTSALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGE 29
M SAL SF G++LR PT GKG RQVTRAA+EFYGP+RA +LGPF++ TP YL GE
Sbjct: 1 MASALLCNSFAGASLRSAVPTAGKGNRQVTRAAIEFYGPDRATFLGPFTD--TPSYLNGE 58
Query: 28 FAGDYGWDT 2
F GDYGWDT
Sbjct: 59 FPGDYGWDT 67
>ref|WP_043700718.1| hypothetical protein, partial [Nocardia abscessus]
Length = 172
Score = 96.7 bits (239), Expect = 5e-18
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = -2
Query: 208 MTSALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGE 29
M SAL +SFLG++LR PT+G+G +QVTRAA+EFYGP+RA +LGPF+E P YL GE
Sbjct: 1 MASALMCQSFLGASLRSAVPTKGQGNKQVTRAAIEFYGPDRAGFLGPFTE--APSYLKGE 58
Query: 28 FAGDYGWDT 2
F GDYGWDT
Sbjct: 59 FPGDYGWDT 67
>ref|WP_043700712.1| hypothetical protein, partial [Nocardia abscessus]
Length = 149
Score = 94.7 bits (234), Expect = 2e-17
Identities = 43/69 (62%), Positives = 53/69 (76%)
Frame = -2
Query: 208 MTSALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGE 29
M S + K+FLG++L PT GKGT+QVTR AVEFYGP RA +LGPF++ +P YLTGE
Sbjct: 1 MASTMMAKTFLGASLAKAVPTSGKGTKQVTRVAVEFYGPNRAGYLGPFTK--SPSYLTGE 58
Query: 28 FAGDYGWDT 2
+ GDYGWDT
Sbjct: 59 YPGDYGWDT 67
>ref|XP_005651359.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169] gi|384253340|gb|EIE26815.1| major
light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 94.0 bits (232), Expect = 4e-17
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = -2
Query: 208 MTSALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGE 29
M S + K+FLG++L PT GKGT+QVTRAA+EFYGP RA +LGPF++ +P YL GE
Sbjct: 1 MASTMMAKTFLGASLAKAVPTSGKGTKQVTRAAIEFYGPNRAGYLGPFTK--SPSYLNGE 58
Query: 28 FAGDYGWDT 2
+ GDYGWDT
Sbjct: 59 YPGDYGWDT 67
>ref|XP_005650981.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding
protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 92.0 bits (227), Expect = 1e-16
Identities = 41/62 (66%), Positives = 52/62 (83%)
Frame = -2
Query: 187 KSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGW 8
+SFLG++LR PT+G+G +QVTRAA+EFYGP+RA +LGPF+E +P YL GEF GDYGW
Sbjct: 3 QSFLGASLRSAVPTKGQGNKQVTRAAIEFYGPDRAGFLGPFTE--SPSYLKGEFPGDYGW 60
Query: 7 DT 2
DT
Sbjct: 61 DT 62
>gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 87.8 bits (216), Expect = 3e-15
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = -2
Query: 202 SALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFA 23
+A+A +SF + V + +G +QVTRAAVEFYGP+RAKWLGPFS++ TP YLTGEF
Sbjct: 2 AAVAARSFAATVAGQVGAS-ARGQKQVTRAAVEFYGPDRAKWLGPFSDD-TPSYLTGEFP 59
Query: 22 GDYGWDT 2
GDYGWDT
Sbjct: 60 GDYGWDT 66
>ref|XP_005644537.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding
protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 86.3 bits (212), Expect = 7e-15
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -2
Query: 208 MTSALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGE 29
M SAL SF+ S R V+ + KG +QVTRA++E+YGP+R K+LGP+S+ ATP YL GE
Sbjct: 1 MASALLSNSFVVSARRTVSSPKSKG-KQVTRASIEWYGPDRPKFLGPYSDGATPSYLKGE 59
Query: 28 FAGDYGWDT 2
+ GDYGWDT
Sbjct: 60 YPGDYGWDT 68
>ref|XP_005845510.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
gi|307105157|gb|EFN53408.1| hypothetical protein
CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 85.1 bits (209), Expect = 2e-14
Identities = 40/64 (62%), Positives = 47/64 (73%)
Frame = -2
Query: 193 AQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDY 14
A ++F G T R + K +QVTRA+VEFYGP+RAK+LGPFSE A P YL GEF GDY
Sbjct: 7 ASRAFTGITARQ-STKSAKARKQVTRASVEFYGPDRAKFLGPFSEGAVPSYLKGEFPGDY 65
Query: 13 GWDT 2
GWDT
Sbjct: 66 GWDT 69
>ref|XP_005843949.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
gi|307103588|gb|EFN51847.1| hypothetical protein
CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 85.1 bits (209), Expect = 2e-14
Identities = 35/46 (76%), Positives = 41/46 (89%)
Frame = -2
Query: 139 KGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGWDT 2
+G+RQVTRA+VEFYGP+RAKWLGPFS+ A P YL GEF GDYGWD+
Sbjct: 19 RGSRQVTRASVEFYGPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDS 64
>gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 83.2 bits (204), Expect = 6e-14
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = -2
Query: 139 KGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGWDT 2
+ TRQVTRAA+E+YGP+R K+LGPFSE TP YLTGEFAGDYGWDT
Sbjct: 17 RATRQVTRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDT 62
>ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis] gi|300262048|gb|EFJ46257.1|
light-harvesting chlorophyll a/b-binding protein [Volvox
carteri f. nagariensis]
Length = 251
Score = 82.4 bits (202), Expect = 1e-13
Identities = 40/66 (60%), Positives = 48/66 (72%)
Frame = -2
Query: 199 ALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAG 20
A+ KS L S++RP A + R V RAA+E+YGP+R K+LGPFSE TP YLTGEF G
Sbjct: 2 AVVAKSALRSSVRP-ATVASRAARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 60
Query: 19 DYGWDT 2
DYGWDT
Sbjct: 61 DYGWDT 66
>tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 82.4 bits (202), Expect = 1e-13
Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Frame = -2
Query: 190 QKSFLGSTLRPVAPTQGKGTRQVT-RAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDY 14
Q S +G+T + P KG ++V+ +AAVE+YGP+RAKWLGP+S+ A P YLTGEF GDY
Sbjct: 3 QTSLVGTTTKSTLP---KGNKRVSVQAAVEWYGPDRAKWLGPYSDGAVPSYLTGEFPGDY 59
Query: 13 GWDT 2
GWDT
Sbjct: 60 GWDT 63
>ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii] gi|15430556|dbj|BAB64413.1|
light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii] gi|15430564|dbj|BAB64417.1|
light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii] gi|158277154|gb|EDP02923.1|
light-harvesting protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 249
Score = 81.6 bits (200), Expect = 2e-13
Identities = 39/66 (59%), Positives = 47/66 (71%)
Frame = -2
Query: 199 ALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAG 20
A KS + S++RP G+ R V RAA+E+YGP+R K+LGPFSE TP YLTGEF G
Sbjct: 2 AAIMKSAVRSSVRPTV--SGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPG 59
Query: 19 DYGWDT 2
DYGWDT
Sbjct: 60 DYGWDT 65
>sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
[Dunaliella tertiolecta] gi|167985|gb|AAA62772.1| 28.5
kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 80.9 bits (198), Expect = 3e-13
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = -2
Query: 157 VAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGWDT 2
+ T+ + V RAAVEFYGP+RAK+LGPFSEN TP+YLTGEF GDYGWDT
Sbjct: 15 IRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDT 66
>gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 80.9 bits (198), Expect = 3e-13
Identities = 38/62 (61%), Positives = 46/62 (74%)
Frame = -2
Query: 187 KSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGW 8
KS + S++RP G+ R V RAA+E+YGP+R K+LGPFSE TP YLTGEF GDYGW
Sbjct: 3 KSAVRSSVRPTV--SGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGW 60
Query: 7 DT 2
DT
Sbjct: 61 DT 62
>gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina] gi|90191873|gb|ABD91648.1| major
light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 80.9 bits (198), Expect = 3e-13
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = -2
Query: 157 VAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGWDT 2
+ T+ + V RAAVEFYGP+RAK+LGPFSEN TP+YLTGEF GDYGWDT
Sbjct: 15 IRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDT 66
>gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina] gi|90191875|gb|ABD91649.1| major
light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 80.9 bits (198), Expect = 3e-13
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = -2
Query: 157 VAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGEFAGDYGWDT 2
+ T+ + V RAAVEFYGP+RAK+LGPFSEN TP+YLTGEF GDYGWDT
Sbjct: 15 IRQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDT 66
>sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major
light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii] gi|167409|gb|AAA33082.1| chlorophyll
a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 80.5 bits (197), Expect = 4e-13
Identities = 38/69 (55%), Positives = 42/69 (60%)
Frame = -2
Query: 208 MTSALAQKSFLGSTLRPVAPTQGKGTRQVTRAAVEFYGPERAKWLGPFSENATPDYLTGE 29
M ALA + L T + + VEFYGP RAKWLGP+SENATP YLTGE
Sbjct: 1 MAFALASRKALQVTCKATGKKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGE 60
Query: 28 FAGDYGWDT 2
F GDYGWDT
Sbjct: 61 FPGDYGWDT 69