BLASTX nr result

ID: Cinnamomum23_contig00020003 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00020003
         (504 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ERM98834.1| hypothetical protein AMTR_s00093p00169580 [Ambore...    99   4e-22
gb|ERM97418.1| hypothetical protein AMTR_s00251p00013890 [Ambore...    80   4e-13
ref|NP_064043.1| orf112a gene product (mitochondrion) [Beta vulg...    60   4e-07
ref|XP_012482084.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal pr...    58   3e-06

>gb|ERM98834.1| hypothetical protein AMTR_s00093p00169580 [Amborella trichopoda]
          Length = 131

 Score = 98.6 bits (244), Expect(3) = 4e-22
 Identities = 53/77 (68%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
 Frame = +3

Query: 192 PSGVTFNT*CYVHAVIFYLSKSTTLYVVYVWGGRCGREVPHFDSRPVSISDPR*GITPLG 371
           PS VT  T CYVHAVI  L KS T YVV VWG RCGREVP F+S PVSISDPR  IT LG
Sbjct: 23  PSRVTLVTFCYVHAVILSLPKSITPYVVAVWGDRCGREVPQFNSHPVSISDPRSRITRLG 82

Query: 372 LF---GPEPAGNGPTYL 413
           LF     + AGNGPTYL
Sbjct: 83  LFFVRSQQVAGNGPTYL 99



 Score = 31.6 bits (70), Expect(3) = 4e-22
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +1

Query: 460 GCYQDDFFMPIKEPR 504
           G YQDDFFMPIK PR
Sbjct: 113 GGYQDDFFMPIKGPR 127



 Score = 21.2 bits (43), Expect(3) = 4e-22
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 410 PCLWTSCRANLCSIGLM 460
           P    S R+++CSIGL+
Sbjct: 96  PTYLVSSRSHICSIGLV 112


>gb|ERM97418.1| hypothetical protein AMTR_s00251p00013890 [Amborella trichopoda]
          Length = 111

 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 39/52 (75%), Positives = 43/52 (82%)
 Frame = -3

Query: 190 SK*SKAENCCSLERRSAEVVPTIEVRVWD*AFRMIKTNKFFVSLVEPTPISY 35
           S+ SKAENCCSLER S E +PT EVRVWD AF+MIKT KFFVSL+EP  ISY
Sbjct: 60  SQFSKAENCCSLERLSVEGIPTTEVRVWDWAFQMIKTQKFFVSLIEPMQISY 111


>ref|NP_064043.1| orf112a gene product (mitochondrion) [Beta vulgaris subsp.
           vulgaris] gi|9049343|dbj|BAA99353.1| orf112a
           (mitochondrion) [Beta vulgaris subsp. vulgaris]
          Length = 112

 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = -3

Query: 400 PLPAGSGPKRPNGVIPYLGSEMLTGRESKWGTSLP 296
           P+PAGS  ++ NG+IPYL SEMLTGRESKWGTSLP
Sbjct: 49  PIPAGSLTEKTNGLIPYLESEMLTGRESKWGTSLP 83


>ref|XP_012482084.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal protein S14,
           mitochondrial [Gossypium raimondii]
          Length = 164

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = -1

Query: 504 SRFFDGHKEIVLVATIKPIEQRLALQLVHKQGK 406
           SR FDGHKEIVLVAT KPIEQ LA QLVHKQGK
Sbjct: 132 SRSFDGHKEIVLVATTKPIEQGLAPQLVHKQGK 164


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