BLASTX nr result

ID: Cinnamomum23_contig00018817 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00018817
         (305 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P84786.1|RIP_DRIMA RecName: Full=Ribosome-inactivating protei...    99   1e-18
gb|AAM89506.1|AF289118_1 type 1 ribosome-inactivating protein mu...    84   4e-14
gb|AAM89504.1|AF289116_1 type 1 ribosome-inactivating protein mu...    74   3e-11
gb|AAQ09025.1|AF289119_1 type 1 ribosome-inactivating protein mu...    74   5e-11
gb|AAM89505.1|AF289117_1 type 1 ribosome-inactivating protein mu...    72   2e-10
gb|AAM89507.1|AF289120_1 type 1 ribosome-inactivating protein mu...    69   9e-10
gb|AAT08723.1| ribosome-inactivating protein [Hyacinthus orienta...    61   3e-07

>sp|P84786.1|RIP_DRIMA RecName: Full=Ribosome-inactivating protein charybdin; AltName:
           Full=rRNA N-glycosidase [Drimia maritima]
           gi|110590853|pdb|2B7U|A Chain A, Ribosome Inactivating
           Protein Type 1 From Charybdis Maritima Agg
          Length = 257

 Score = 98.6 bits (244), Expect = 1e-18
 Identities = 47/101 (46%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
 Frame = -1

Query: 302 KERAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTWMRT-LENDWGRFSTIVLY 126
           ++RA++LI+V+QM  EA+RF+DI+++FA  L     V LP WM+  LE +W RFS ++L 
Sbjct: 152 RDRARSLIVVSQMFCEATRFVDIANHFAFNLESSEPVKLPQWMQNDLEKNWVRFSFMILK 211

Query: 125 ADAFPCYVYQPQTINGEVMKTVADLRDKLGILLRNPDTLKP 3
           ++A PCY ++PQTI G+++KT  +L + LGI+ ++PDT  P
Sbjct: 212 SNADPCYKFEPQTIYGKIIKTADELLNFLGIVEQHPDTRSP 252


>gb|AAM89506.1|AF289118_1 type 1 ribosome-inactivating protein musarmin 1 [Muscari
           armeniacum]
          Length = 295

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 47/91 (51%), Positives = 57/91 (62%)
 Frame = -1

Query: 296 RAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTWMRTLENDWGRFSTIVLYADA 117
           RAKAL+++ QM+ EA+RFI ISD+FAS L    +   P  M  LE +W R S  VL  DA
Sbjct: 174 RAKALVVLIQMICEATRFIPISDHFASNLATDYAKLPPWMMSDLEKNWARISREVLKWDA 233

Query: 116 FPCYVYQPQTINGEVMKTVADLRDKLGILLR 24
              Y  QPQTING+ + TV  LR  LGIL R
Sbjct: 234 DTSYKIQPQTINGQTITTVEGLRPYLGILYR 264


>gb|AAM89504.1|AF289116_1 type 1 ribosome-inactivating protein musarmin 3 [Muscari
           armeniacum]
          Length = 298

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
 Frame = -1

Query: 296 RAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTWM-RTLENDWGRFSTIVLYAD 120
           RAKAL++V QM+ EA+RFI + ++FAS L    +  LP WM   L+ +W R S  VL   
Sbjct: 174 RAKALVVVIQMICEAARFISVENHFASNLATQRAK-LPLWMMEDLQKNWARISREVLRWA 232

Query: 119 AFPCYVYQPQTINGEVMKTVADLRDKLGILLR 24
           A P Y  QPQTIN + + TVA LR  LG L R
Sbjct: 233 ADPTYRIQPQTINRKRITTVAGLRPYLGTLYR 264


>gb|AAQ09025.1|AF289119_1 type 1 ribosome-inactivating protein musarmin 4 [Muscari
           armeniacum]
          Length = 294

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = -1

Query: 296 RAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTW-MRTLENDWGRFSTIVLYAD 120
           RA+AL++V QM +EA+RFI +SDYFAS L    +  LP W MR L+ +W   S  VL  D
Sbjct: 173 RARALVVVIQMFSEAARFISVSDYFASNL-ATPNAKLPAWMMRDLQKNWALISRDVLRWD 231

Query: 119 AFPCYVYQPQTINGEVMKTVADLRDKLGILLRN 21
           A P Y   P TING  +     LR  LGIL R+
Sbjct: 232 ARPSYNIGPFTINGNRITDFLRLRPYLGILYRS 264


>gb|AAM89505.1|AF289117_1 type 1 ribosome-inactivating protein musarmin 2 [Muscari
           armeniacum]
          Length = 294

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = -1

Query: 296 RAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTW-MRTLENDWGRFSTIVLYAD 120
           RA+AL++V QM +EA+RFI +SDYFAS L    +  LP W M  L+ +W   S  VL   
Sbjct: 173 RARALVVVIQMFSEATRFISVSDYFASNL-ATPNTKLPAWMMEDLQKNWAHISQEVLRWG 231

Query: 119 AFPCYVYQPQTINGEVMKTVADLRDKLGIL 30
             P Y  Q   ING  + TVA LR  LGIL
Sbjct: 232 VRPSYNIQISNINGRPITTVAQLRPYLGIL 261


>gb|AAM89507.1|AF289120_1 type 1 ribosome-inactivating protein musarmin le [Muscari
           armeniacum]
          Length = 295

 Score = 69.3 bits (168), Expect = 9e-10
 Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
 Frame = -1

Query: 296 RAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTW-MRTLENDWGRFSTIVLYAD 120
           RAKAL++V QM+ EA+RFI + ++FAS L       LP W M  L+ +W R S  VL  D
Sbjct: 174 RAKALVVVIQMICEAARFISVENHFASTL-ATQRAKLPLWMMEDLQKNWARISREVLKWD 232

Query: 119 AFPCYVYQPQTINGEVMKTVADLRDKLGILLR 24
           A   Y  QP TIN + + TV  LR  LG L R
Sbjct: 233 ADTSYKIQPITINRKRITTVEGLRPYLGTLYR 264


>gb|AAT08723.1| ribosome-inactivating protein [Hyacinthus orientalis]
          Length = 258

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
 Frame = -1

Query: 296 RAKALILVAQMLAEASRFIDISDYFASKLXXXXSVFLPTWMRT-LENDWGRFSTIVLYAD 120
           RAK+ ++V QM++EA+RFID+S  FASKL       L  WMR  LEN+W   S  +L  +
Sbjct: 144 RAKSSLVVIQMISEAARFIDLSKLFASKLAKSAK--LEEWMRNDLENNWALMSYQILKPE 201

Query: 119 AFPCYVYQP 93
           A PCY ++P
Sbjct: 202 ADPCYKFKP 210


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