BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00018408
         (2304 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   534   e-148
ref|XP_011623893.1| PREDICTED: RNA polymerase sigma factor sigB ...   530   e-147
gb|ERM94758.1| hypothetical protein AMTR_s00011p00258380 [Ambore...   530   e-147
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   528   e-147
ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-...   518   e-144
ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB ...   515   e-143
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   514   e-142
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   513   e-142
ref|XP_010943391.1| PREDICTED: RNA polymerase sigma factor sigB-...   513   e-142
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   512   e-142
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ...   511   e-141
ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-...   509   e-141
ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB ...   508   e-140
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   506   e-140
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   505   e-140
ref|XP_009377636.1| PREDICTED: RNA polymerase sigma factor sigB ...   505   e-140
ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-...   504   e-140
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ...   503   e-139
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB ...   502   e-139
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota...   500   e-138

>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  534 bits (1375), Expect = e-148
 Identities = 299/570 (52%), Positives = 364/570 (63%), Gaps = 39/570 (6%)
 Frame = -3

Query: 1798 SLCIHHRAINL-HKRHWHC----------------------VSSLATTFIDVEKLRIPSL 1688
            ++ IH R   L H +H HC                       +++ TT +DVEKLR+PSL
Sbjct: 14   TISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTTTLVDVEKLRMPSL 73

Query: 1687 EDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEALIPVXXXXXXXXXXXXXX 1508
            E HS S A+   L+Y G+ G P + SF A LA E+ +TG EALI                
Sbjct: 74   ESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAAAAEAVALAKEAVE 133

Query: 1507 XXXXXXXXSLGDTFAKLDDA-DDFPSEGDILLLERARPIEVQP--------------EEE 1373
                        + ++ ++   DF SE  I  LE+A+  E Q               EEE
Sbjct: 134  VAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRIDHSVGLESRQEEE 193

Query: 1372 NISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXXXXXXXXXXXXX 1193
                 S KD++     + E +LLQ+QL KSIA RSG                        
Sbjct: 194  QSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRARAMEKASTNVLSVK 253

Query: 1192 XXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXXXXXXXXX 1013
                      + Q++DYSDPL Y             TEE+ELSEGIQ             
Sbjct: 254  SGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLHEELA 313

Query: 1012 EH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQGVGMNLE 836
            E  GGQPT AQWA+ AG+D+KTLR+RLNYGI CK++MIKSNIRLVISIAKNYQG GMNL+
Sbjct: 314  ERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQ 373

Query: 835  DLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNHIADAAYR 656
            DLVQEGCRGLVKG EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIRLP H+ +A YR
Sbjct: 374  DLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 433

Query: 655  VKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQTLKPSEV 476
            V+EA+KQLYS+NGRHPDN+E+A+ATGLS+KRL  +LLTPKAP S DQK G++Q +KPSE+
Sbjct: 434  VREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQKIGMNQDMKPSEI 493

Query: 475  TADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQEIGESMGV 296
             ADP+AET E++L KQ MK+DLEKVLDSLN REKQVIR RFG++DGRMKTLQEIGE MGV
Sbjct: 494  IADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGV 553

Query: 295  TRERIRQIESCAFRKLKNKKRIENLKQYLI 206
            +RERIRQIESCAFRKLKNK+R +NL+QY+I
Sbjct: 554  SRERIRQIESCAFRKLKNKRRTKNLQQYVI 583


>ref|XP_011623893.1| PREDICTED: RNA polymerase sigma factor sigB [Amborella trichopoda]
          Length = 563

 Score =  530 bits (1364), Expect = e-147
 Identities = 287/532 (53%), Positives = 353/532 (66%), Gaps = 17/532 (3%)
 Frame = -3

Query: 1747 CVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGK 1568
            CVSS AT  +DV+K+R+PSL  HSTS +T G LTY G+IG   +T F A L  E+ L  +
Sbjct: 31   CVSSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKKTDFEAALVTESLLKSE 90

Query: 1567 EALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIEV 1388
            EA+I                              ++ D  DDFPSE DIL L+RAR  E+
Sbjct: 91   EAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDKVDDFPSEADILRLQRARLTEM 150

Query: 1387 Q----------------PEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXX 1256
            +                 + ++++  S  +  +   RE+ +E LQ+Q S+ +A RS    
Sbjct: 151  ERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEALQLQHSQRVAVRSRRQT 210

Query: 1255 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEE 1076
                                             QE+DYSDPL Y             TEE
Sbjct: 211  ERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEE 270

Query: 1075 IELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIK 899
            +ELSEGIQ             E  GG+PT  QWA+ AG+D+K LR RL+YG HCK++MIK
Sbjct: 271  LELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMIK 330

Query: 898  SNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRK 719
            SNIRLVISIAKNYQGVG++++DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RK
Sbjct: 331  SNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 390

Query: 718  SLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTP 539
            SLS+QSRTIRLP H+ DA YRV+EA KQLYS+NGRHP+++E+A+ATGLS+KRL T+LLTP
Sbjct: 391  SLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEVAEATGLSMKRLTTVLLTP 450

Query: 538  KAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRS 359
            KAPRS DQK GI+Q LKPSEV +DPEAET ED+L KQ MK+DLEKVL++LN REKQV+R 
Sbjct: 451  KAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRW 510

Query: 358  RFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            RFGL+DGRMKTLQEIGE MGV+RERIRQIES AFRKLKNKKR +NL+QYL+S
Sbjct: 511  RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKNLRQYLLS 562


>gb|ERM94758.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  530 bits (1364), Expect = e-147
 Identities = 287/532 (53%), Positives = 353/532 (66%), Gaps = 17/532 (3%)
 Frame = -3

Query: 1747 CVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGK 1568
            CVSS AT  +DV+K+R+PSL  HSTS +T G LTY G+IG   +T F A L  E+ L  +
Sbjct: 38   CVSSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKKTDFEAALVTESLLKSE 97

Query: 1567 EALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIEV 1388
            EA+I                              ++ D  DDFPSE DIL L+RAR  E+
Sbjct: 98   EAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDKVDDFPSEADILRLQRARLTEM 157

Query: 1387 Q----------------PEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXX 1256
            +                 + ++++  S  +  +   RE+ +E LQ+Q S+ +A RS    
Sbjct: 158  ERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEALQLQHSQRVAVRSRRQT 217

Query: 1255 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEE 1076
                                             QE+DYSDPL Y             TEE
Sbjct: 218  ERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEE 277

Query: 1075 IELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIK 899
            +ELSEGIQ             E  GG+PT  QWA+ AG+D+K LR RL+YG HCK++MIK
Sbjct: 278  LELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMIK 337

Query: 898  SNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRK 719
            SNIRLVISIAKNYQGVG++++DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RK
Sbjct: 338  SNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 397

Query: 718  SLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTP 539
            SLS+QSRTIRLP H+ DA YRV+EA KQLYS+NGRHP+++E+A+ATGLS+KRL T+LLTP
Sbjct: 398  SLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEVAEATGLSMKRLTTVLLTP 457

Query: 538  KAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRS 359
            KAPRS DQK GI+Q LKPSEV +DPEAET ED+L KQ MK+DLEKVL++LN REKQV+R 
Sbjct: 458  KAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRW 517

Query: 358  RFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            RFGL+DGRMKTLQEIGE MGV+RERIRQIES AFRKLKNKKR +NL+QYL+S
Sbjct: 518  RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKNLRQYLLS 569


>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  528 bits (1360), Expect = e-147
 Identities = 295/522 (56%), Positives = 351/522 (67%), Gaps = 9/522 (1%)
 Frame = -3

Query: 1741 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEA 1562
            +++ TT +D EKLR+PSLE H  S      LTY G+I  P +  F A LA E  +TG EA
Sbjct: 53   ATMTTTVVDDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEA 112

Query: 1561 LIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDD-ADDFPSEGDILLLERARPIEVQ 1385
            LI                           +  +K D    D PSE D    E A+  E+ 
Sbjct: 113  LIAAAAVEAVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEI- 171

Query: 1384 PEEENISHHST-------KDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXX 1226
             E+ ++ HHS        +D++     + E++LLQ+QLSKSIA RSG             
Sbjct: 172  -EQVDMVHHSLGAESRPKEDSDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRARAA 230

Query: 1225 XXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGX 1046
                                 + Q+VDYSDPL Y             TEE+E SEGIQ  
Sbjct: 231  EKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQDL 290

Query: 1045 XXXXXXXXXXXE-HGGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIA 869
                       E +GGQPT AQWA+ AG+D+KTLR+RLNYGI CK++MIKSNIRLVISIA
Sbjct: 291  LKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVISIA 350

Query: 868  KNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIR 689
            KNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIR
Sbjct: 351  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 410

Query: 688  LPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKT 509
            LP H+ +A YRV+EARKQLYS+NGRHPDN+E+A+ATGLS+KRL  +LLTPKAPRS DQK 
Sbjct: 411  LPFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKI 470

Query: 508  GIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMK 329
            GI+Q LKPSEV ADP+AET E++L K+ MK+DLEKVLDSLN REKQVIR RFGL+DGRMK
Sbjct: 471  GINQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGRMK 530

Query: 328  TLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            TLQEIGE MGV+RERIRQIESCAFRKLKNKKR +NL+QYLIS
Sbjct: 531  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572


>ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-like [Phoenix
            dactylifera]
          Length = 566

 Score =  518 bits (1335), Expect = e-144
 Identities = 295/552 (53%), Positives = 352/552 (63%), Gaps = 17/552 (3%)
 Frame = -3

Query: 1807 HFSSLCIHHRAINLHKR-----HWHCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTY 1643
            HF  L  HH ++N   R        CVS+L    ID++  RIPSLE HSTS      LTY
Sbjct: 18   HFRPLS-HHPSLNSKARDSVCFRSPCVSTLTAAVIDIQ--RIPSLEAHSTSLDATRPLTY 74

Query: 1642 TGSIGLPVQTSFGAILARETFLTGKEALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFA 1463
             G++G P++TS  A LA ET LTG+EA+I                           D   
Sbjct: 75   VGAVGPPMKTSIEATLATETLLTGEEAVIAAAAAEAVALARAAVEVAKDAAQIIGNDPSV 134

Query: 1462 KLDDADDFPSEGDILLLERARPIEVQ-------PEEENISHHSTKD----TENSIGRESE 1316
            KL+ ++DF SE D   LER R  E++           +   H  KD    T+ S     E
Sbjct: 135  KLEKSEDFSSEADAFRLERVRLTEMELIRTTNNSTPTDTEPHEAKDPSQGTDVSNLTHKE 194

Query: 1315 IELLQVQLSKSIAARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSD 1136
            +E  Q+Q  +SIA RSG                                  + QEVDYSD
Sbjct: 195  LESQQMQYPESIAVRSGRQTDRKARRTRAAEKAAVSVIPVKSGSTSKKKRSTFQEVDYSD 254

Query: 1135 PLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXXXXXXXXXE-HGGQPTIAQWASVAGLD 959
            PL Y              EE+ELSE IQ             E HGGQPT AQWA+ AG+D
Sbjct: 255  PLRYLRGTTSTSKLLTAAEELELSEAIQDMLKLERLQQELAERHGGQPTFAQWAAAAGVD 314

Query: 958  RKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDA 779
            ++TLR+RLNYG  CK++MIKSNIRLVISIAKNYQG GMNL+DLVQEGCRGLVKG EKFDA
Sbjct: 315  QRTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDA 374

Query: 778  SKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDND 599
            SKGFKFSTYAHWWIKQ++R+SLSEQSRTIRLP H+ +A YRV+EA+KQLYS+NGR+PD  
Sbjct: 375  SKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENGRYPDYQ 434

Query: 598  EIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMK 419
            E+A+ATGLS+KRL  ++LTPKAPRS DQK GI+Q+LKPSEV ADPEAET E++L KQ  K
Sbjct: 435  EVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEVIADPEAETSEEILIKQFRK 494

Query: 418  KDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNK 239
            +DL KVLD+LN REKQV+R RFGL+DG  KTLQEIGE MGV+RERIRQIES AFRKLKNK
Sbjct: 495  QDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGVSRERIRQIESSAFRKLKNK 554

Query: 238  KRIENLKQYLIS 203
            KR  +L+QY+IS
Sbjct: 555  KRTRHLQQYVIS 566


>ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
            grandis]
          Length = 601

 Score =  515 bits (1327), Expect = e-143
 Identities = 299/588 (50%), Positives = 368/588 (62%), Gaps = 16/588 (2%)
 Frame = -3

Query: 1918 PSSHMTHSLVAAPFQLQVQLSSPLLYVWKGRIKRAFPHFSSLCIHHRAINLHKRHWHCVS 1739
            P+ H+ HS         VQ + P  +  K R      +F + C+      L       +S
Sbjct: 32   PAGHLLHS---------VQDARPNCFAEKNR---ETTYFRAQCL------LSATSPSTLS 73

Query: 1738 SLATTFI-DVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEA 1562
            S AT  + D+EKLR+PSLE  + S  +    TYTG++G P + + GA LA ET LT  EA
Sbjct: 74   SAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEA 133

Query: 1561 LIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIEVQ- 1385
            +I                           ++ + +D+  +  S     L + A  +E++ 
Sbjct: 134  VIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEH 193

Query: 1384 ---------PE----EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1244
                     PE    E N+  +ST  +E+      E++LLQVQL KSIA RS        
Sbjct: 194  SNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKE 253

Query: 1243 XXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1064
                                       + QEVDYSDPL Y             TEE ELS
Sbjct: 254  IRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELS 313

Query: 1063 EGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 887
            EGIQ             E  GG+P  AQWA+ AG+D+KTLR+RLNYG  CK++MIKSNIR
Sbjct: 314  EGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIR 373

Query: 886  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 707
            LVISIAKNYQG GMNL+DLVQEGCRGLV+GCEKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 374  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSD 433

Query: 706  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 527
            QSRTIRLP H+ +A YRVKEARKQLYS+NGR PDN+E+A+ATGLS+KRL  +L+TPKAPR
Sbjct: 434  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPR 493

Query: 526  SFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGL 347
            S DQK GI+Q LKPSEV ADP AET EDVL KQ M++DLEKVLD+LN REKQV+R RFGL
Sbjct: 494  SLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGL 553

Query: 346  DDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            +DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY+++
Sbjct: 554  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 601


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  514 bits (1324), Expect = e-142
 Identities = 287/530 (54%), Positives = 349/530 (65%), Gaps = 16/530 (3%)
 Frame = -3

Query: 1744 VSSLATTFI-DVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGK 1568
            +SS AT  + D+EKLR+PSLE  + S  +    TYTG++G P + + GA LA ET LT  
Sbjct: 59   LSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSD 118

Query: 1567 EALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIEV 1388
            EA+I                           ++ + +D+  +  S     L + A  +E+
Sbjct: 119  EAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLEL 178

Query: 1387 Q----------PE----EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXX 1250
            +          PE    E N+  +ST  +E+      E++LLQVQL KSIA RS      
Sbjct: 179  EHSNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTER 238

Query: 1249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIE 1070
                                         + QEVDYSDPL Y             TEE E
Sbjct: 239  KEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETE 298

Query: 1069 LSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSN 893
            LSEGIQ             E  GG+P  AQWA+ AG+D+KTLR+RLNYG  CK++MIKSN
Sbjct: 299  LSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSN 358

Query: 892  IRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSL 713
            IRLVISIAKNYQG GMNL+DLVQEGCRGLV+GCEKFDASKGFKFSTYAHWWIKQ++RKSL
Sbjct: 359  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSL 418

Query: 712  SEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKA 533
            S+QSRTIRLP H+ +A YRVKEARKQLYS+NGR PDN+E+A+ATGLS+KRL  +L+TPKA
Sbjct: 419  SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKA 478

Query: 532  PRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRF 353
            PRS DQK GI+Q LKPSEV ADP AET EDVL KQ M++DLEKVLD+LN REKQV+R RF
Sbjct: 479  PRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRF 538

Query: 352  GLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            GL+DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY+++
Sbjct: 539  GLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  513 bits (1322), Expect = e-142
 Identities = 290/536 (54%), Positives = 346/536 (64%), Gaps = 23/536 (4%)
 Frame = -3

Query: 1741 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEA 1562
            S+ AT  +DVEKLR+PS E H  S A     TY G+ G P + S GA LA +  LT  EA
Sbjct: 85   STTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATGPPSEASLGATLATDNLLTSDEA 144

Query: 1561 LIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLD-------DADDFPSEGDILL-LER 1406
            +I                        +    +AK +         D F S+  +    ER
Sbjct: 145  VIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTEMKSGVSFATDSFTSKWALFTEAER 204

Query: 1405 ARPI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1244
            A  I      E + EE++   +ST +++       E+E L+ QLS+SIA RS        
Sbjct: 205  AGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEELEHLEEQLSRSIAVRSRRQTERKA 264

Query: 1243 XXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1064
                                       + Q+VDYSDPL Y              EE+ELS
Sbjct: 265  KRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSDPLRYLRGTTSTSRLLTANEELELS 324

Query: 1063 EGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 887
            EGIQ             E  GGQPT AQWA+ AG+D+KTLR RLNYG+HCK++MIKSNIR
Sbjct: 325  EGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIR 384

Query: 886  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 707
            LVISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 385  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 444

Query: 706  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 527
            QSRTIRLP H+ +A YRVKEARKQLYS+NGRHPDN+E+A+ATGLS+KRL  +LLTPKAPR
Sbjct: 445  QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPR 504

Query: 526  SFDQKTGIDQTLKPS--------EVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQ 371
            S DQK GI+Q LKPS        EV ADPEAET ED+L KQ M+KDLEKVLDSL+ RE+Q
Sbjct: 505  SLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAEDMLIKQFMRKDLEKVLDSLSQRERQ 564

Query: 370  VIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            VIR RFG++DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QYL+S
Sbjct: 565  VIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLS 620


>ref|XP_010943391.1| PREDICTED: RNA polymerase sigma factor sigB-like [Elaeis guineensis]
          Length = 555

 Score =  513 bits (1320), Expect = e-142
 Identities = 288/541 (53%), Positives = 352/541 (65%), Gaps = 6/541 (1%)
 Frame = -3

Query: 1807 HFSSLCIHHRAINLHKR-----HWHCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTY 1643
            HF SL  HH ++N   R        CVS+     ID+E   I SLE  STS A    LTY
Sbjct: 18   HFRSLS-HHPSLNSKARDSVCFRSQCVSTPTAAVIDME--HILSLEARSTSLAATRPLTY 74

Query: 1642 TGSIGLPVQTSFGAILARETFLTGKEALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFA 1463
             G+IG P +T+  A LA E  LTG+EA+I                           D   
Sbjct: 75   VGAIGPPTKTNMEATLATEALLTGEEAIIAAAAAEAVALARTAVEAAKDAALTIANDPSV 134

Query: 1462 KLDDADDFPSEGDILLLERARPIEVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKS 1283
            KL+ + DF SE DIL LER+   + +P EE+++   ++D + S    +E+E  ++  S S
Sbjct: 135  KLEKSLDFSSEADILQLERSTATDTKPHEEHLAKDPSQDVDISNLIHNELEPQKMHYSGS 194

Query: 1282 IAARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXX 1103
            IA RSG                                  + QE+DYSDPL Y       
Sbjct: 195  IAVRSGRQTERIARRARAAERAASSVIPVKSGSSSKKKRSAFQEIDYSDPLRYLRGTTST 254

Query: 1102 XXXXXXTEEIELSEGIQGXXXXXXXXXXXXE-HGGQPTIAQWASVAGLDRKTLRERLNYG 926
                   EE+ELSEGIQ             E +G QPT+AQWA+ AG+D++TLR+RLNYG
Sbjct: 255  SKLLTAAEELELSEGIQDLLKLERLREELEERNGAQPTLAQWAAAAGVDQRTLRKRLNYG 314

Query: 925  IHCKERMIKSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAH 746
              CK++MI SNIRLVISIAKNYQG GMNL+DLVQEGCRGLVKG EKFDASKGFKFSTYAH
Sbjct: 315  TFCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAH 374

Query: 745  WWIKQSIRKSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLK 566
            WWIKQ++R+SLSEQSRTIRLP H+ +A YRV++A KQLY++NGRHPD +EIA+ATGLS+K
Sbjct: 375  WWIKQAVRRSLSEQSRTIRLPFHMVEATYRVRQAEKQLYNENGRHPDYEEIAEATGLSMK 434

Query: 565  RLMTILLTPKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLN 386
            RL  ++L PKAPRS DQK GI+Q+LKPSEV ADP+AET E++L KQ MK+DL KVL+SLN
Sbjct: 435  RLNAVMLIPKAPRSLDQKIGINQSLKPSEVIADPKAETSEEILIKQFMKQDLNKVLNSLN 494

Query: 385  SREKQVIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLI 206
             REKQVIR RFGL+DG  KTLQEIGE MGV+RERIRQIES AFRKLK+KKR +NL+QY+ 
Sbjct: 495  PREKQVIRWRFGLEDGMTKTLQEIGELMGVSRERIRQIESNAFRKLKSKKRTKNLQQYVN 554

Query: 205  S 203
            S
Sbjct: 555  S 555


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  512 bits (1319), Expect = e-142
 Identities = 285/528 (53%), Positives = 342/528 (64%), Gaps = 15/528 (2%)
 Frame = -3

Query: 1741 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEA 1562
            S+  T  +DVEKLR+PS E HS S  T    TYTG+ G P + SFGA LA E  LT  EA
Sbjct: 48   STATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEA 107

Query: 1561 LIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILL--------LER 1406
            +I                            + AK +      S  D L          ER
Sbjct: 108  VIAAAAAEAVALARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAER 167

Query: 1405 ARPI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1244
            A  +      E++ EE++   +STK+++       E++LL+ QLS+SIA RS        
Sbjct: 168  AGIVGDYVSDELEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKA 227

Query: 1243 XXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1064
                                       + Q++DYSDPL Y              EE+ELS
Sbjct: 228  KRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELS 287

Query: 1063 EGIQGXXXXXXXXXXXXEHGGQP-TIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 887
            EGIQ             E  G+P T AQWA+ A +DRKTLRERLNYG  CK++MIKSNIR
Sbjct: 288  EGIQDLLKLEVLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIR 347

Query: 886  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 707
            LVISIAKNYQG GMNL+DLVQEGCRGL++G EKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 348  LVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 407

Query: 706  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 527
            QSRTIRLP H+ +A YRVKEARKQLYS+NGR PDN E+A+ATGLS+KRL  +LL PKAPR
Sbjct: 408  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPR 467

Query: 526  SFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGL 347
            S DQK GI+Q LKPSEV ADPEA++ ED+L KQ MKKDLEKVLDSL+ RE+QVIR RFG+
Sbjct: 468  SLDQKIGINQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGM 527

Query: 346  DDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            +DGRMKTLQEIGESMGV+RERIRQIE CAFRKLKNK+R ++L+QYL+S
Sbjct: 528  EDGRMKTLQEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575


>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
          Length = 643

 Score =  511 bits (1315), Expect = e-141
 Identities = 283/528 (53%), Positives = 349/528 (66%), Gaps = 15/528 (2%)
 Frame = -3

Query: 1741 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEA 1562
            S+  TT +DVEKLR+PSLE +S S A     TYTG+ G P++ +FGA LA E  LT +EA
Sbjct: 116  STGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGATGPPIEANFGATLATENLLTSEEA 175

Query: 1561 LIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIEV-Q 1385
            +I                           +  AK + +     + + L  + A+ +E  Q
Sbjct: 176  VIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAESSSPVSPKTNALHFKWAKHMETKQ 235

Query: 1384 PE-------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1244
            P              E +    + K++E+      E ELLQ QLS+ I ARS        
Sbjct: 236  PSRLGASMGSETALVENHFIQLAIKESEDVESTNQEFELLQEQLSEGITARSSRQIERKA 295

Query: 1243 XXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1064
                                       S Q+VD+SDPL Y              EEIELS
Sbjct: 296  RRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELS 355

Query: 1063 EGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 887
            EGIQ             +  GGQPTIAQWA+ AG+D+KTLR+R+NYGI CK++MIKSNIR
Sbjct: 356  EGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIR 415

Query: 886  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 707
            LVISIAKNYQG GMNL+DLVQ+GCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 416  LVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 475

Query: 706  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 527
            QSRTIRLP H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPKAPR
Sbjct: 476  QSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPR 535

Query: 526  SFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGL 347
            S +QK GI+Q LKPSEV ADP+AET ED+L K+ MK+DLEKVLDSLN+REKQV+R RFGL
Sbjct: 536  SLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGL 595

Query: 346  DDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            +DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 596  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 643


>ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-like [Elaeis guineensis]
          Length = 566

 Score =  509 bits (1310), Expect = e-141
 Identities = 283/529 (53%), Positives = 345/529 (65%), Gaps = 14/529 (2%)
 Frame = -3

Query: 1747 CVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGK 1568
            CVS+     ID++  RIPSLE  S S      LTY GS+G P++T   A LA ET LTG+
Sbjct: 42   CVSTQTAAVIDIQ--RIPSLEARSNSLDDTRPLTYVGSVGPPMKTGIEATLATETLLTGE 99

Query: 1567 EALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIEV 1388
            EA++                           D   KL+ ++DF SE D   LER R  E+
Sbjct: 100  EAVVAAAAAEAVALARAAVEVAKDAAQIIRNDPSVKLEKSEDFSSEADAFWLERVRHNEM 159

Query: 1387 QPEEENISHHSTK-DTENSIGRE------------SEIELLQVQLSKSIAARSGXXXXXX 1247
                   +HHST  DTE    ++            +E++  Q+Q  +SIA RSG      
Sbjct: 160  GLIRT--THHSTPTDTEPHEAKDPSQDIDVSNLTNNELQSQQMQYPESIAVRSGRQTERK 217

Query: 1246 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIEL 1067
                                        + QE+DYSDPLHY              EE+EL
Sbjct: 218  ARRARAEEKAAVSVIPIKSGSSSKKKRSAFQEIDYSDPLHYLRGTTSTSKLLTAAEELEL 277

Query: 1066 SEGIQGXXXXXXXXXXXXE-HGGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNI 890
            S+GIQ             E HGGQPT AQWA+ AG+D++TLR+RLNYG  CK++MIKSNI
Sbjct: 278  SKGIQDLLKLEKLREELAERHGGQPTFAQWAAAAGVDQRTLRKRLNYGGFCKDKMIKSNI 337

Query: 889  RLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLS 710
            RLVISIAKNYQG GMNL+DLVQEGCRGLVKG E+FDA KGFKFSTYAHWWIKQ++R+SLS
Sbjct: 338  RLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAERFDALKGFKFSTYAHWWIKQAVRRSLS 397

Query: 709  EQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAP 530
            EQSRTIRLP H+ +A YRV+EA+KQLYS+NGRHPD +E+A+ATGLS+KRL  ++LTPKAP
Sbjct: 398  EQSRTIRLPIHMVEATYRVREAKKQLYSENGRHPDYEEVAEATGLSMKRLNAVMLTPKAP 457

Query: 529  RSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFG 350
            RS DQK GI+Q+LKPSEV ADP+AET E++L KQ MK+DL KVLD+LN REKQV+R RFG
Sbjct: 458  RSLDQKIGINQSLKPSEVIADPKAETSEEILIKQFMKQDLNKVLDTLNPREKQVVRWRFG 517

Query: 349  LDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            L+DG  KTLQEIGE MGV+RERIRQIES AFRKLK+KKR  +L+QY+IS
Sbjct: 518  LEDGMTKTLQEIGELMGVSRERIRQIESSAFRKLKSKKRTRHLQQYVIS 566


>ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Pyrus x
            bretschneideri]
          Length = 643

 Score =  508 bits (1307), Expect = e-140
 Identities = 282/533 (52%), Positives = 347/533 (65%), Gaps = 17/533 (3%)
 Frame = -3

Query: 1750 HCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTG 1571
            H  S+  TT +D+E+LR+PSLE +S S A++   TYTG+IG   + +FGA LA ET LT 
Sbjct: 111  HSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWTYTGAIGPLTEANFGATLATETLLTS 170

Query: 1570 KEALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDT--FAKLDDADDFPSEGDILLLERARP 1397
            +EA+I                            T   AK + +     E   L    A+ 
Sbjct: 171  EEAVIEAAAAEAVTLAKAALKVAKDVAMLVSSSTNHSAKPESSSPVSPETKALHFNWAQH 230

Query: 1396 IEVQPE--------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXX 1259
            +E +                E++    + K+ E       E ELLQ QLSK I A+S   
Sbjct: 231  METEQVSRVGASMGAETAFVEDHFIQSAIKELEEVEQTYEEFELLQEQLSKGITAKSSRQ 290

Query: 1258 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTE 1079
                                            S QE+D+SDPL Y              E
Sbjct: 291  TERKARRAKAAEKAAASVVSVKSGSATRKKRSSVQEIDHSDPLRYLRSTTHTSRLLTANE 350

Query: 1078 EIELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMI 902
            EIE SEGIQ             +  GGQPTIAQWA+ AG+D+KTLR+R+NYGI CK++MI
Sbjct: 351  EIEFSEGIQELLKLEKLHEELAQRCGGQPTIAQWAAAAGVDQKTLRKRVNYGILCKDKMI 410

Query: 901  KSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIR 722
            KSNIRLVISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++R
Sbjct: 411  KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 470

Query: 721  KSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLT 542
            KSLS+QSRTIRLP H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLT
Sbjct: 471  KSLSDQSRTIRLPFHMVEATYRVREAKKQLYSLNGRHPNDEEVAEATGLSMKRLSAVLLT 530

Query: 541  PKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIR 362
            PKAPRS +QK GI+Q LKPSEV +DP+AET ED+L K+ MK+DLEKVLDSLN+REKQV+R
Sbjct: 531  PKAPRSLEQKIGINQNLKPSEVISDPDAETAEDLLMKKFMKQDLEKVLDSLNTREKQVVR 590

Query: 361  SRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
             RFGL+DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 591  WRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 643


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  506 bits (1302), Expect = e-140
 Identities = 285/526 (54%), Positives = 339/526 (64%), Gaps = 14/526 (2%)
 Frame = -3

Query: 1738 SLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEAL 1559
            S +T  +D+EKLR+PS E H  S       TY GSIG P +T FG+ LA ET +TG +A+
Sbjct: 53   STSTAVLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKET-FGSTLATETLITGDDAV 111

Query: 1558 IPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILL-------LERAR 1400
            I                              ++ +   + PS  D+          +RAR
Sbjct: 112  IAAAAAEAVALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIADVSSRWPQFTETDRAR 171

Query: 1399 PI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXX 1238
             I      E    EE+   H TK++++      E+ELLQ QLS+ IA RS          
Sbjct: 172  IIGDSVTAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERR 231

Query: 1237 XXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEG 1058
                                       QEVDYSDPL Y             TEE+ELSEG
Sbjct: 232  TRAAEKAAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEG 291

Query: 1057 IQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLV 881
            IQ             E  GGQPT  QWA+ AG+D+KTLR RLNYGI CK+RMIKSNIRLV
Sbjct: 292  IQDLLKLERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLV 351

Query: 880  ISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQS 701
            ISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QS
Sbjct: 352  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 411

Query: 700  RTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSF 521
            RTIRLP H+ +A YRVKEARKQLYS+NGR+PD++E+A+ATGLS+KRL  +LLTPKAPRS 
Sbjct: 412  RTIRLPFHMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSL 471

Query: 520  DQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDD 341
            DQK GI+  LKPSE+ ADP+AET ED+L KQ MK+DLEKVLDSL+ RE QVIR RFGL+D
Sbjct: 472  DQKIGINMDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLED 531

Query: 340  GRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            GR+KTLQEIGE MGV+RERIRQIES AFRKLK KKR + LKQYL++
Sbjct: 532  GRIKTLQEIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLVA 577


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  505 bits (1301), Expect = e-140
 Identities = 284/529 (53%), Positives = 344/529 (65%), Gaps = 16/529 (3%)
 Frame = -3

Query: 1741 SSLATTFI-DVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKE 1565
            +S+ATT + DVEKLR+PS E HS S  T    TYTG+ G P + SFGA LA E  LT  E
Sbjct: 47   TSMATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDE 106

Query: 1564 ALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILL--------LE 1409
            A+I                              AK +      S  D L          E
Sbjct: 107  AVIAAAAAEAVALARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAE 166

Query: 1408 RARPI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXX 1247
            RA  +      E++ EE+++  +STK+++       E++LL+ QLS+SIA RS       
Sbjct: 167  RAGIVGDYVSDELELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERK 226

Query: 1246 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIEL 1067
                                        + Q++DYSDPL Y              EE+EL
Sbjct: 227  AKRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELEL 286

Query: 1066 SEGIQGXXXXXXXXXXXXEHGGQP-TIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNI 890
            SEGIQ             E  G+P T AQWA+ A +DRKTLRERLNYG  C ++MIKSNI
Sbjct: 287  SEGIQDLLKLEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNI 346

Query: 889  RLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLS 710
            RLVISIAKNYQG GMNL+DLVQEGCRGL++G EKFDASKGFKFSTYAHWWIKQ++RKSLS
Sbjct: 347  RLVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 406

Query: 709  EQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAP 530
            +QSRTIRLP H+ +A YRVKEARKQL+S+NGR PDN E+A+ATGLS+KRL  +LL PKAP
Sbjct: 407  DQSRTIRLPFHMVEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAP 466

Query: 529  RSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFG 350
            RS DQK GI+Q LKPSEV ADPEA++ ED+L KQ MKKDLEKVLDSL+ RE+QVIR RFG
Sbjct: 467  RSLDQKIGINQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFG 526

Query: 349  LDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            ++DGR+KTLQEIGESMGV+RERIRQIE CAFRKLKNK+R ++L+QYL+S
Sbjct: 527  MEDGRVKTLQEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575


>ref|XP_009377636.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Pyrus x
            bretschneideri]
          Length = 613

 Score =  505 bits (1300), Expect = e-140
 Identities = 280/521 (53%), Positives = 343/521 (65%), Gaps = 5/521 (0%)
 Frame = -3

Query: 1750 HCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTG 1571
            H  S+  TT +D+E+LR+PSLE +S S A++   TYTG+IG   + +FGA LA ET LT 
Sbjct: 111  HSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWTYTGAIGPLTEANFGATLATETLLTS 170

Query: 1570 KEALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFP----SEGDILLLERA 1403
            +EA+I                              A L  A D          +  +  +
Sbjct: 171  EEAVIEAAAAEAVTLAK------------------AALKVAKDVAMLHMETEQVSRVGAS 212

Query: 1402 RPIEVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXXX 1223
               E    E++    + K+ E       E ELLQ QLSK I A+S               
Sbjct: 213  MGAETAFVEDHFIQSAIKELEEVEQTYEEFELLQEQLSKGITAKSSRQTERKARRAKAAE 272

Query: 1222 XXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGXX 1043
                                S QE+D+SDPL Y              EEIE SEGIQ   
Sbjct: 273  KAAASVVSVKSGSATRKKRSSVQEIDHSDPLRYLRSTTHTSRLLTANEEIEFSEGIQELL 332

Query: 1042 XXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIAK 866
                      +  GGQPTIAQWA+ AG+D+KTLR+R+NYGI CK++MIKSNIRLVISIAK
Sbjct: 333  KLEKLHEELAQRCGGQPTIAQWAAAAGVDQKTLRKRVNYGILCKDKMIKSNIRLVISIAK 392

Query: 865  NYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIRL 686
            NYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIRL
Sbjct: 393  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 452

Query: 685  PNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKTG 506
            P H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPKAPRS +QK G
Sbjct: 453  PFHMVEATYRVREAKKQLYSLNGRHPNDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIG 512

Query: 505  IDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMKT 326
            I+Q LKPSEV +DP+AET ED+L K+ MK+DLEKVLDSLN+REKQV+R RFGL+DGRMKT
Sbjct: 513  INQNLKPSEVISDPDAETAEDLLMKKFMKQDLEKVLDSLNTREKQVVRWRFGLEDGRMKT 572

Query: 325  LQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            LQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 573  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 613


>ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-like [Musa acuminata
            subsp. malaccensis]
          Length = 567

 Score =  504 bits (1299), Expect = e-140
 Identities = 286/546 (52%), Positives = 347/546 (63%), Gaps = 17/546 (3%)
 Frame = -3

Query: 1789 IHHRAINLHKRHWHCVSSLATTFIDVEKLRIPSLEDHSTSAATAG--SLTYTGSIGLPVQ 1616
            +H RA         CV S  T  ID E+  IP LE HSTS++T     LTY+GS+G P++
Sbjct: 24   LHPRAREFVCFRSRCVLSPTTAVIDFEQ--IPKLEAHSTSSSTCAIRPLTYSGSVGPPIK 81

Query: 1615 TSFGAILARETFLTGKEALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFP 1436
            TS  A LA ET L   EA+I                           +  A+++  ++ P
Sbjct: 82   TSIEATLASETLLQCDEAVIAAAAAEAVALARAALELAKDAAQMIGKNLSAEVEKLEETP 141

Query: 1435 SEGDILLLERARPIEVQ--------------PEEENISHHSTKDTENSIGRESEIELLQV 1298
            SE DI  LER    E +              P E N+S      T+ S     E E   +
Sbjct: 142  SEADIKWLERVSLTETEWAGFTNHPAATETIPFEYNVSLDQYASTDISSSTFDEPEFQGM 201

Query: 1297 QLSKSIAARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXX 1118
            Q  ++IA RSG                                  + QE+DYSDPL Y  
Sbjct: 202  QHIENIAVRSGRQIERRARRARAADKATAGVISLKSGSSGKKKRSAFQEIDYSDPLRYLR 261

Query: 1117 XXXXXXXXXXXTEEIELSEGIQGXXXXXXXXXXXXEHGG-QPTIAQWASVAGLDRKTLRE 941
                        EEIELSEGIQ             E  G QPT AQWA+ AG+D+KTLR+
Sbjct: 262  GTTSTSKLLTAAEEIELSEGIQSLLKLERLQQDLAERNGCQPTFAQWAAAAGIDQKTLRK 321

Query: 940  RLNYGIHCKERMIKSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKF 761
            R+N+G +CK++MIKSNIRLVISIAKNYQG G+NL+DLVQEGCRGLVKG EKFDASKGFKF
Sbjct: 322  RINHGTYCKDKMIKSNIRLVISIAKNYQGAGINLQDLVQEGCRGLVKGAEKFDASKGFKF 381

Query: 760  STYAHWWIKQSIRKSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKAT 581
            STYAHWWIKQ++RKSLSEQSRTIRLP H+ +A YRV+EA+K+LYS+NGRHPDN+E+A+A 
Sbjct: 382  STYAHWWIKQAVRKSLSEQSRTIRLPFHMVEATYRVREAKKKLYSENGRHPDNEEVAEAA 441

Query: 580  GLSLKRLMTILLTPKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKV 401
            GLS+KRL  ++LTPKAPRS DQK GI+Q+LK SEV ADP A+T ED+L KQ M++DL KV
Sbjct: 442  GLSMKRLAAVMLTPKAPRSLDQKIGINQSLKASEVIADPAAKTSEDILMKQFMREDLNKV 501

Query: 400  LDSLNSREKQVIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENL 221
            LD+LN REKQV+R RFGLDDGRMKTLQEIGE MGV+RERIRQIESCAFRKLK+KKR +NL
Sbjct: 502  LDTLNLREKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKSKKRTKNL 561

Query: 220  KQYLIS 203
            +QY+IS
Sbjct: 562  RQYIIS 567


>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            gi|296090195|emb|CBI40014.3| unnamed protein product
            [Vitis vinifera]
          Length = 575

 Score =  503 bits (1294), Expect = e-139
 Identities = 285/530 (53%), Positives = 344/530 (64%), Gaps = 16/530 (3%)
 Frame = -3

Query: 1744 VSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKE 1565
            +S+  T  +D+EKLR+PSLE HS S A     TY G +G P + +F A LARET LT +E
Sbjct: 46   LSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEE 105

Query: 1564 ALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDAD-DFPSEGDILLLERARPIEV 1388
            A+I                           +  AK +     F S  D     R +  E 
Sbjct: 106  AVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTET 165

Query: 1387 Q----------PEEENISHHSTKD-TENSIGRE---SEIELLQVQLSKSIAARSGXXXXX 1250
            +           E   + ++S +D TE+S   E    E+ELL+ + SKSI  RS      
Sbjct: 166  ERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVER 225

Query: 1249 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIE 1070
                                         S QEVDYSDPL Y             TEE+E
Sbjct: 226  KARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELE 285

Query: 1069 LSEGIQGXXXXXXXXXXXXEHGG-QPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSN 893
            LSEGIQ             E  G +PT AQWA+ AG+D+KTLR R NYGI CK++MIKSN
Sbjct: 286  LSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSN 345

Query: 892  IRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSL 713
            IRLVISIAKNYQG GMN++DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSL
Sbjct: 346  IRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 405

Query: 712  SEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKA 533
            S+QSRTIRLP H+ +A YRVKEARKQLYS+NGRHP+N+E+A+ATGLS+KRL  +LLTPKA
Sbjct: 406  SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKA 465

Query: 532  PRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRF 353
            PRS DQK GI+Q LKPSEV ADP+AET E++L KQ M++DLEKVL+SLN REKQVIR R+
Sbjct: 466  PRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRY 525

Query: 352  GLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            GL+DGR KTLQEIGE MGV+RERIRQIESCAFRKLKNK+R ++L+QYL+S
Sbjct: 526  GLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB [Fragaria vesca subsp.
            vesca]
          Length = 616

 Score =  502 bits (1292), Expect = e-139
 Identities = 275/531 (51%), Positives = 343/531 (64%), Gaps = 15/531 (2%)
 Frame = -3

Query: 1750 HCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTG 1571
            H  S+   T +D+E+  +PSL  +S S       TYTG+IG P + ++GA LA ET LT 
Sbjct: 86   HSTSTPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTS 145

Query: 1570 KEALIPVXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKLDDADDFPSEGDILLLERARPIE 1391
            +EA+I                           + +AK++++           +  A+ +E
Sbjct: 146  EEAVIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLE 205

Query: 1390 VQPE--------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXX 1253
             +P               E++    +  ++EN      E ELLQ QLS  IAARS     
Sbjct: 206  TEPTLRIGDSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTE 265

Query: 1252 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEI 1073
                                          S Q+VD+SDPL Y              EEI
Sbjct: 266  RKARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEI 325

Query: 1072 ELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKS 896
            ELSEGIQ             +  G QPT AQWA+ AG+D+KTLR+R+NYGI CK++MIKS
Sbjct: 326  ELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKS 385

Query: 895  NIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKS 716
            NIRLVISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKS
Sbjct: 386  NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 445

Query: 715  LSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPK 536
            LS+QSRTIRLP H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPK
Sbjct: 446  LSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPK 505

Query: 535  APRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSR 356
            APRS +QK GI+Q LKPS+V ADP+AET ED+L K+ MK+DLEKVLDSLN REKQVIR R
Sbjct: 506  APRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWR 565

Query: 355  FGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            FG++DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 566  FGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616


>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 574

 Score =  500 bits (1287), Expect = e-138
 Identities = 280/516 (54%), Positives = 340/516 (65%), Gaps = 6/516 (1%)
 Frame = -3

Query: 1732 ATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLPVQTSFGAILARETFLTGKEALIP 1553
            AT  + VEKLR PSL+ +S S  +    TYTG+ G PV+ +F A LA ET LT +EA+I 
Sbjct: 58   ATYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIA 117

Query: 1552 VXXXXXXXXXXXXXXXXXXXXXXSLGDTFAKL-----DDADDFPSEGDILLLERARPIEV 1388
                                       T A+       +A +  +      +  +   E+
Sbjct: 118  AAAAEAVTLAKAAVKVAKDAALLVRPSTRAESISLVSSEARNIKTAQAASRVRDSLRAEM 177

Query: 1387 QPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXXXXXXXX 1208
               E++    + K++ +      E+ +LQ QLSKSIA RS                    
Sbjct: 178  ALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAAN 237

Query: 1207 XXXXXXXXXXXXXXXSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXXXX 1028
                           S Q+VD+SDPL Y             TEEIELSEGIQ        
Sbjct: 238  VVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKL 297

Query: 1027 XXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQGV 851
                 E  GG PT AQWA+ AG+D+KTLR R+NYGI CK++MIKSN+RLVISIAKNYQG 
Sbjct: 298  QEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGA 357

Query: 850  GMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNHIA 671
            GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIRLP H+ 
Sbjct: 358  GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 417

Query: 670  DAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQTL 491
            +A YRVKEARKQLYS+NGR P+++E+A+ATGLS+KRL  +LLTPKAPRS +QK GI+Q L
Sbjct: 418  EATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNL 477

Query: 490  KPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQEIG 311
            KPSE+ ADP+AET EDVLT+Q MK+DL+KVLDSLN REKQVIR RFG+DDGRMKTLQEIG
Sbjct: 478  KPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIG 537

Query: 310  ESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 203
            E MGV+RERIRQIESCAFRKLKNKKR ++L+QYLIS
Sbjct: 538  ELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573