BLASTX nr result

ID: Cinnamomum23_contig00016433 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00016433
         (864 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009780146.1| PREDICTED: uncharacterized protein LOC104229...    49   9e-08
ref|XP_009616949.1| PREDICTED: uncharacterized protein LOC104109...    47   2e-06
gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Tritic...    40   6e-06
ref|XP_009769881.1| PREDICTED: uncharacterized protein LOC104220...    49   8e-06

>ref|XP_009780146.1| PREDICTED: uncharacterized protein LOC104229240 [Nicotiana
           sylvestris]
          Length = 253

 Score = 48.5 bits (114), Expect(2) = 9e-08
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
 Frame = +2

Query: 401 QGSTLSPYLFSTNYEQIN*S----------YSRRVILVCCL*MI*YWWMN*WR*CEI*EM 550
           QGS LSP+LF+   + ++            +   ++L+  +  +    +  WR       
Sbjct: 84  QGSALSPFLFALVMDVVSHHIQGEVSWCMLFVNDIVLIDEMRSVVNARLEVWR------- 136

Query: 551 MTALESKG*NKFLFIYFRKHSKISIKKTEYIN*NFSGDVQRNITHVRIEAQVIPQR---- 718
              LESKG             K+S  KTEY+   FS         V ++AQVIP+R    
Sbjct: 137 -QTLESKG------------FKLSRTKTEYLECKFSDGTHYVDIEVTLDAQVIPKRASFK 183

Query: 719 FLPVLCLCN**E*EIEEDDVCRIRVVGLK*RFTSGMLCDRHIPNKIEG 862
           +L  +   N    EI+ED   RI    ++ R  SG+LCDR++P +++G
Sbjct: 184 YLGSIIQGNE---EIDEDVAHRIGAGWMEWRLASGVLCDRNVPLRLKG 228



 Score = 35.8 bits (81), Expect(2) = 9e-08
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = +1

Query: 202 ERRKNLYTVFINLD--YDMLLRYLTRWTLDKRSARRGYIDIIEDVYEGNK 345
           ER+K+L+ VFI+L+  Y+ +LR +    L+      GYI +I+D+Y+  K
Sbjct: 14  ERKKDLHMVFIDLEKAYNKVLREVLWRCLEVSGVSVGYISVIKDMYDDAK 63


>ref|XP_009616949.1| PREDICTED: uncharacterized protein LOC104109376 [Nicotiana
           tomentosiformis]
          Length = 348

 Score = 47.4 bits (111), Expect(3) = 2e-06
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +2

Query: 605 KHSKISIKKTEYIN*NFSGDVQRNITHVRIEAQVIPQR-FLPVLCLCN**E*EIEEDDVC 781
           K  K+S  KTEY+   FS +       VR++++VIP+R     L      + EI+ D   
Sbjct: 122 KGFKLSRTKTEYLECKFSDEPGEADMDVRLDSKVIPKRGSFKYLGSIIQGDGEIDGDVTH 181

Query: 782 RIRVVGLK*RFTSGMLCDRHIPNKIEG 862
           RIRV  +K R   G+LCD+ +P K++G
Sbjct: 182 RIRVGWMKWRLAPGVLCDKKVPPKLKG 208



 Score = 27.7 bits (60), Expect(3) = 2e-06
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 429 FPLIMSKLISHIQEELSWCVV 491
           F L+M  L  HIQ E+ WC++
Sbjct: 73  FALVMDALTHHIQGEVPWCML 93



 Score = 23.5 bits (49), Expect(3) = 2e-06
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 484 VLFVDDIVLVDE 519
           +LF DDIVL+DE
Sbjct: 92  MLFADDIVLIDE 103


>gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
          Length = 882

 Score = 40.0 bits (92), Expect(2) = 6e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = +1

Query: 193 KNIERRKNLYTVFINLD--YDMLLRYLTRWTLDKRSARRGYIDIIEDVYE 336
           K++ R K+L+ VFI+L+  YD + R +  W L+K      YI +I+D+Y+
Sbjct: 158 KDVGRNKDLHMVFIDLEKAYDKIPRNVMWWALEKHKVPAKYITLIKDMYD 207



 Score = 38.1 bits (87), Expect(2) = 6e-06
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
 Frame = +2

Query: 401 QGSTLSPYLFSTNYEQIN*S----------YSRRVILVCCL*MI*YWWMN*WR*CEI*EM 550
           QGS LSPYLF+   +++             ++  V+LV          +  WR       
Sbjct: 231 QGSALSPYLFALVMDEVTRDIQGDIPWCMLFADDVVLVDDSRTGVNRKLELWR------- 283

Query: 551 MTALESKG*NKFLFIYFRKHSKISIKKTEYIN*NFSGDVQRNITHVRIEAQVIPQR---- 718
              LESKG             ++S  KTEY+   FS   +     V ++ QV+P++    
Sbjct: 284 -QTLESKG------------FRLSRTKTEYMMCGFS-TTRCEEEEVSLDGQVVPRKDTFW 329

Query: 719 FLPVLCLCN**E*EIEEDDVCRIRVVGLK*RFTSGMLCDRHIPNKIEG 862
           +L  L      +  I+ED   RI+   +K R  SG+LCD+ +P K++G
Sbjct: 330 YLGSLLQE---DGGIDEDVNHRIKAGWMKWRQASGILCDKRVPQKLKG 374


>ref|XP_009769881.1| PREDICTED: uncharacterized protein LOC104220677 [Nicotiana
           sylvestris]
          Length = 252

 Score = 48.9 bits (115), Expect(2) = 8e-06
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +2

Query: 605 KHSKISIKKTEYIN*NFSGDVQRNITHVRIEAQVIPQR-FLPVLCLCN**E*EIEEDDVC 781
           K  K+S  KTEY+   FS  +      VR+++QVIP R     L      + EI+ED + 
Sbjct: 150 KGFKLSRTKTEYLECKFSDVLGETNREVRLDSQVIPNRESFKYLGSIIQGDGEIDEDVMH 209

Query: 782 RIRVVGLK*RFTSGMLCDRHIPNKIEG 862
            I V  +K R  SG+LCD+ +P K++G
Sbjct: 210 HIGVGWMKWRLASGVLCDKKVPLKLKG 236



 Score = 28.9 bits (63), Expect(2) = 8e-06
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 420 LIFFPLIMSKLISHIQEELSWCVV 491
           L  F L+M  L  HIQ E+ WC++
Sbjct: 98  LFLFALVMDALTIHIQGEVPWCML 121


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