BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00016285
         (1497 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010267983.1| PREDICTED: RNA polymerase II-associated prot...   248   e-109
ref|XP_010267984.1| PREDICTED: RNA polymerase II-associated prot...   248   e-109
ref|XP_006840434.1| PREDICTED: RNA polymerase II-associated prot...   236   e-104
gb|KEH43107.1| TPR domain protein [Medicago truncatula]               248   1e-99
ref|XP_010327508.1| PREDICTED: RNA polymerase II-associated prot...   236   3e-98
ref|XP_008781117.1| PREDICTED: RNA polymerase II-associated prot...   288   6e-75
ref|XP_010921488.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   287   1e-74
ref|XP_009416301.1| PREDICTED: RNA polymerase II-associated prot...   285   5e-74
ref|XP_008246007.1| PREDICTED: RNA polymerase II-associated prot...   283   3e-73
ref|XP_009373288.1| PREDICTED: RNA polymerase II-associated prot...   282   6e-73
ref|XP_009373287.1| PREDICTED: RNA polymerase II-associated prot...   281   7e-73
ref|XP_008388472.1| PREDICTED: RNA polymerase II-associated prot...   280   3e-72
ref|XP_008388471.1| PREDICTED: RNA polymerase II-associated prot...   279   4e-72
ref|XP_009416309.1| PREDICTED: RNA polymerase II-associated prot...   278   8e-72
ref|XP_012088892.1| PREDICTED: RNA polymerase II-associated prot...   275   7e-71
ref|XP_012088891.1| PREDICTED: RNA polymerase II-associated prot...   275   7e-71
ref|XP_012088890.1| PREDICTED: RNA polymerase II-associated prot...   275   7e-71
gb|KDP23389.1| hypothetical protein JCGZ_23222 [Jatropha curcas]      275   7e-71
ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Popu...   271   1e-69
ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfam...   270   2e-69

>ref|XP_010267983.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Nelumbo
            nucifera]
          Length = 489

 Score =  248 bits (633), Expect(2) = e-109
 Identities = 129/205 (62%), Positives = 157/205 (76%)
 Frame = -3

Query: 1294 KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTA 1115
            ++D+ RN DAV+ +SS     E  PDA SEKELGNEY+KQKK+ +AI+CYSRSIAL PTA
Sbjct: 109  RFDFSRNFDAVNKLSSSYLNAEDSPDATSEKELGNEYFKQKKFNEAIDCYSRSIALMPTA 168

Query: 1114 VAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFA 935
            VA+ANRAMAY+KIK+FEEAE+DCTEALNLDDRYIKAYSRRATARKELGKLKA++EDA+FA
Sbjct: 169  VAYANRAMAYLKIKRFEEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKAAIEDAEFA 228

Query: 934  VRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMXXXXXXXXXXXX 755
            +RL+PNNQEL+KQY E KAL DKEI  K SG  +N+IQG    +  +M            
Sbjct: 229  LRLEPNNQELKKQYAESKALYDKEILKKASGIARNAIQGETAAQVDRM---------KGT 279

Query: 754  XXKIPSKPPNLMKEIEIRTTTGNRR 680
              K PSKP  +++EI+ +TT G  R
Sbjct: 280  DGKFPSKPSIIVQEIKSKTTVGGTR 304



 Score =  178 bits (452), Expect(2) = e-109
 Identities = 91/157 (57%), Positives = 114/157 (72%)
 Frame = -1

Query: 615 SNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLL 436
           S+  +++++LK SVQEL             KNIT P+SAY+FEVSWR LS +  LQARLL
Sbjct: 329 SHAVDKREELKTSVQELASRAASRAMAEAVKNITPPKSAYEFEVSWRGLSGDRALQARLL 388

Query: 435 KMIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLS 256
           K+I P TLPQLFKNALSA IL+D++ CIATF MEET+LAV+ L NLT++SRF MII+CLS
Sbjct: 389 KVISPPTLPQLFKNALSAQILVDVVSCIATFIMEETDLAVSFLDNLTKISRFSMIIMCLS 448

Query: 255 AADKADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCP 145
           A ++ DL KIWDEVFS E +     E L++L  KY P
Sbjct: 449 ALERDDLRKIWDEVFSHEGMGVEYRETLSRLRPKYIP 485


>ref|XP_010267984.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Nelumbo
            nucifera]
          Length = 484

 Score =  248 bits (633), Expect(2) = e-109
 Identities = 129/205 (62%), Positives = 157/205 (76%)
 Frame = -3

Query: 1294 KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTA 1115
            ++D+ RN DAV+ +SS     E  PDA SEKELGNEY+KQKK+ +AI+CYSRSIAL PTA
Sbjct: 104  RFDFSRNFDAVNKLSSSYLNAEDSPDATSEKELGNEYFKQKKFNEAIDCYSRSIALMPTA 163

Query: 1114 VAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFA 935
            VA+ANRAMAY+KIK+FEEAE+DCTEALNLDDRYIKAYSRRATARKELGKLKA++EDA+FA
Sbjct: 164  VAYANRAMAYLKIKRFEEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKAAIEDAEFA 223

Query: 934  VRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMXXXXXXXXXXXX 755
            +RL+PNNQEL+KQY E KAL DKEI  K SG  +N+IQG    +  +M            
Sbjct: 224  LRLEPNNQELKKQYAESKALYDKEILKKASGIARNAIQGETAAQVDRM---------KGT 274

Query: 754  XXKIPSKPPNLMKEIEIRTTTGNRR 680
              K PSKP  +++EI+ +TT G  R
Sbjct: 275  DGKFPSKPSIIVQEIKSKTTVGGTR 299



 Score =  178 bits (452), Expect(2) = e-109
 Identities = 91/157 (57%), Positives = 114/157 (72%)
 Frame = -1

Query: 615 SNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLL 436
           S+  +++++LK SVQEL             KNIT P+SAY+FEVSWR LS +  LQARLL
Sbjct: 324 SHAVDKREELKTSVQELASRAASRAMAEAVKNITPPKSAYEFEVSWRGLSGDRALQARLL 383

Query: 435 KMIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLS 256
           K+I P TLPQLFKNALSA IL+D++ CIATF MEET+LAV+ L NLT++SRF MII+CLS
Sbjct: 384 KVISPPTLPQLFKNALSAQILVDVVSCIATFIMEETDLAVSFLDNLTKISRFSMIIMCLS 443

Query: 255 AADKADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCP 145
           A ++ DL KIWDEVFS E +     E L++L  KY P
Sbjct: 444 ALERDDLRKIWDEVFSHEGMGVEYRETLSRLRPKYIP 480


>ref|XP_006840434.1| PREDICTED: RNA polymerase II-associated protein 3 [Amborella
            trichopoda] gi|769816630|ref|XP_011621887.1| PREDICTED:
            RNA polymerase II-associated protein 3 [Amborella
            trichopoda] gi|548842152|gb|ERN02109.1| hypothetical
            protein AMTR_s00045p00163960 [Amborella trichopoda]
          Length = 466

 Score =  236 bits (601), Expect(2) = e-104
 Identities = 146/309 (47%), Positives = 184/309 (59%), Gaps = 50/309 (16%)
 Frame = -3

Query: 1414 SNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHE---------------EKK--- 1292
            SNK+ RD  LEFQG L+DLQ W+  + E DK  KGQ  +               E+K   
Sbjct: 5    SNKNVRDHDLEFQGLLSDLQSWERVVKESDKNPKGQVDKIGKPDFGARKTGKGTERKGQS 64

Query: 1291 -------------------YDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKK 1169
                               Y YF NS ++S         E  P+A SEKELGN+Y+KQKK
Sbjct: 65   MKSATVDQKDILGCSDFTNYSYFSNSRSLS--------SEDTPNATSEKELGNDYFKQKK 116

Query: 1168 YKQAIECYSRSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRAT 989
            Y  AIECYSRSIALSP+AVA+ANRAMAY+K +++EEAENDCTEALNLDDRY+KAYSRRAT
Sbjct: 117  YAHAIECYSRSIALSPSAVAYANRAMAYLKTRRYEEAENDCTEALNLDDRYVKAYSRRAT 176

Query: 988  ARKELGKLKASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQ---- 821
            ARKELGKL AS+EDA+FA+RL+PNNQEL+KQY E+K +  K    K SGA K+S Q    
Sbjct: 177  ARKELGKLHASIEDAEFALRLEPNNQELKKQYAEIKEIFAKIAMKKISGAGKSSTQDSGN 236

Query: 820  ---GIQELERSKMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLG 650
                + E+ +  +              KI  K P++MKE++      +RR  + L+  LG
Sbjct: 237  KRDSVSEI-KIDVQDAQPQRSQMDSNGKISKKDPSVMKEVQ------SRRTPEDLNVRLG 289

Query: 649  -----GATP 638
                 G+TP
Sbjct: 290  SQETHGSTP 298



 Score =  172 bits (436), Expect(2) = e-104
 Identities = 90/151 (59%), Positives = 108/151 (71%)
 Frame = -1

Query: 597 KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPPT 418
           K Q K S+ E+            A+NI TP+SAY+FEV+WR LS++   Q  LLK I P 
Sbjct: 315 KHQSKESILEVASRAASRAKAAAAQNIATPKSAYEFEVAWRRLSEDRASQCLLLKTILPE 374

Query: 417 TLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 238
           +LPQLFKNALSAP+LI+IIKC+A FF EET LAV IL NLT++ RFDMII+CLS+ DKAD
Sbjct: 375 SLPQLFKNALSAPMLIEIIKCVAEFFREETNLAVNILDNLTRIGRFDMIIMCLSSKDKAD 434

Query: 237 LCKIWDEVFSSEAVMAHQAEMLAKLHLKYCP 145
           L +IWDEV SS AV    AE L +LH KYCP
Sbjct: 435 LQRIWDEVVSSCAVTMEHAETLERLHSKYCP 465


>gb|KEH43107.1| TPR domain protein [Medicago truncatula]
          Length = 462

 Score =  248 bits (634), Expect(2) = 1e-99
 Identities = 138/288 (47%), Positives = 185/288 (64%), Gaps = 50/288 (17%)
 Frame = -3

Query: 1387 LEFQGFLNDLQDWDHYLEKDKKLKGQAHEEKK---------------------------- 1292
            ++FQGFLNDLQDW+    KDK  K ++H+E K                            
Sbjct: 1    MDFQGFLNDLQDWE-LSTKDKASKTKSHKENKFIKGSSSRSDRSMGVENRSKGDTIAVDH 59

Query: 1291 -------YDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSI 1133
                   YD+ RN+D +S +SS L++++ VPDAASEK+LGNE++KQKK+K+AI+CYSRSI
Sbjct: 60   VRSSSAQYDFSRNNDVLSRVSSSLASED-VPDAASEKDLGNEFFKQKKFKEAIDCYSRSI 118

Query: 1132 ALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASM 953
            A SPTAVA+ANRAMA+IK+++F+EAE+DCTEALNLDDRYIKAYSRRATARKELGK K SM
Sbjct: 119  AFSPTAVAYANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESM 178

Query: 952  EDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELE---------- 803
            EDA+FA+RL+PNNQE++KQY + K+L +KEI  K S A++N+++ + + E          
Sbjct: 179  EDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKASKALRNTVEKVAKSETKVNGSSSIH 238

Query: 802  -----RSKMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTTTGNRREE 674
                   K               +IP+K P LM+EI  + T    R +
Sbjct: 239  SVSHGTKKSGPTEAHCQIKGNERQIPAKEPLLMEEITSKDTKSASRTQ 286



 Score =  144 bits (364), Expect(2) = 1e-99
 Identities = 75/152 (49%), Positives = 103/152 (67%)
 Frame = -1

Query: 597 KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPPT 418
           K ++KASV++L            AKNIT P +AYQFEVSWR  S +  LQA LLK + P 
Sbjct: 311 KPEMKASVEQLASQAACRAMAEAAKNITPPTTAYQFEVSWRGFSGDLALQACLLKAMSPH 370

Query: 417 TLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 238
            LP++FKNALS+ +L++IIKC+ +FF E+ +L V+ + NLT+V RFD+I++CL +A K D
Sbjct: 371 ELPKIFKNALSSTLLVEIIKCVPSFFAEDMDLVVSYMDNLTKVPRFDVIVMCLPSAAKDD 430

Query: 237 LCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPG 142
           L KIW+EVF +EA     AE+L  L  K+  G
Sbjct: 431 LRKIWNEVFCAEATPIEYAEILDNLRSKFYLG 462


>ref|XP_010327508.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Solanum
            lycopersicum]
          Length = 429

 Score =  236 bits (601), Expect(2) = 3e-98
 Identities = 140/298 (46%), Positives = 186/298 (62%), Gaps = 39/298 (13%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYLE-KDKKLKGQAHEEKK------------- 1292
            MA +PSN H RD+  + QG  N+LQDW+  L+ KDKK+K QA  ++              
Sbjct: 1    MARVPSN-HSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETLKEDWSRTSEPLT 59

Query: 1291 ----------------------YDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYK 1178
                                  Y Y +N + +S +SS L ++E+  +A SEKELGNE +K
Sbjct: 60   SPQANGTQQVGKSTSIRNAAGPYSYSKNYNPISHLSSELISEESNINANSEKELGNECFK 119

Query: 1177 QKKYKQAIECYSRSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSR 998
            QKK+ +AI+CYSRSIALSPTAV++ANRAMAY+KIK+F+EAENDCTEALNLDDRYIKAYSR
Sbjct: 120  QKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSR 179

Query: 997  RATARKELGKLKASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQG 818
            R+T+RKELGKLK S+EDA+FA+ L+P N E++KQY EVKAL +KEI  + SGA   S QG
Sbjct: 180  RSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSGATDVSAQG 239

Query: 817  IQELERSKMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTTTGNRR---EEQQLDESL 653
             Q+  ++                 I S   +  K  E+RT    +     +Q+L+ES+
Sbjct: 240  PQKSGKT-----------IKIGPVIQSVSSSSQKVAEVRTIPAKKTHKISKQELEESV 286



 Score =  152 bits (384), Expect(2) = 3e-98
 Identities = 79/149 (53%), Positives = 103/149 (69%)
 Frame = -1

Query: 597 KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPPT 418
           KQ+L+ SVQEL            AKNI  P SAYQFEVSWR LS +  LQ +LLK+  P 
Sbjct: 279 KQELEESVQELAARAAGLAKTEAAKNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPA 338

Query: 417 TLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 238
            LP++FKNALSAP+L+DI++CIATFF+E+  LA+  L +LT+V RFDMII+CLS+ADK++
Sbjct: 339 MLPRIFKNALSAPMLMDIVRCIATFFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSADKSE 398

Query: 237 LCKIWDEVFSSEAVMAHQAEMLAKLHLKY 151
           L KIW+E+F    V    +  L  L + Y
Sbjct: 399 LLKIWEEIFCK--VAEEHSATLGALRVSY 425


>ref|XP_008781117.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Phoenix dactylifera]
          Length = 420

 Score =  288 bits (738), Expect = 6e-75
 Identities = 153/234 (65%), Positives = 183/234 (78%), Gaps = 21/234 (8%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYLEKDK--KLKGQAHEEKKYDYFRNS----- 1271
            MAG+ S K DRDR+LEFQGFLNDL+ WD YL KDK  K+KGQ+HE  K    RN+     
Sbjct: 1    MAGV-SGKPDRDRSLEFQGFLNDLEGWD-YLLKDKGGKMKGQSHESNKPGSLRNAGKVNE 58

Query: 1270 --------------DAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSI 1133
                          +A+S + S   ++E +PDAASEKELGNEY+KQKK+ +AIECYSRSI
Sbjct: 59   DKGPLKKVPAVEVKNAMSRMRSSFYSEEKLPDAASEKELGNEYFKQKKFPEAIECYSRSI 118

Query: 1132 ALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASM 953
            ALSPT+VAFANRAMAY+K+K+FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKASM
Sbjct: 119  ALSPTSVAFANRAMAYLKLKRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASM 178

Query: 952  EDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKM 791
            ED++FA+RL+PNNQEL+KQYTE KAL +KEI  K SG +K S QGI+ +  S+M
Sbjct: 179  EDSEFAMRLEPNNQELKKQYTETKALYEKEIDKKISGPLKKSFQGIEGVSNSEM 232



 Score =  176 bits (447), Expect = 3e-41
 Identities = 87/154 (56%), Positives = 114/154 (74%)
 Frame = -1

Query: 600 RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPP 421
           RK  LKAS+Q+L             K+I  P++AY+FEVSWRALSD+  LQ +LLK IPP
Sbjct: 267 RKHVLKASMQDLASRAASRVMATAGKSIAAPKTAYEFEVSWRALSDDCALQTQLLKSIPP 326

Query: 420 TTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKA 241
             LPQ+FKNALS PILIDIIKC  TFF E+TELAV IL NL +V RFDM+++CLS+AD++
Sbjct: 327 PALPQIFKNALSVPILIDIIKCTTTFFKEDTELAVNILDNLAKVPRFDMMVMCLSSADRS 386

Query: 240 DLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGR 139
           +L +IW+EVFSS+ + A+  E L++L  +YC G+
Sbjct: 387 ELQQIWEEVFSSKDIAANYIETLSRLRSRYCNGK 420


>ref|XP_010921488.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein
            3 [Elaeis guineensis]
          Length = 471

 Score =  287 bits (735), Expect = 1e-74
 Identities = 153/238 (64%), Positives = 181/238 (76%), Gaps = 25/238 (10%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYLEKDK--KLKGQAHEEKKYDYFRN------ 1274
            MAG+ S K D+DR+LEFQGFLNDL+ WD YL KDK  K+KGQ+HE  K    RN      
Sbjct: 1    MAGV-SRKPDKDRSLEFQGFLNDLEGWD-YLLKDKGHKMKGQSHESNKRGSLRNAGKVNE 58

Query: 1273 -----------------SDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECY 1145
                             SDA+S + S   ++E +PDAASEKELGNEY+KQKK+ +AIECY
Sbjct: 59   DEGPLKKVPAVEVKSKYSDAISHMPSSFYSEEKLPDAASEKELGNEYFKQKKFPEAIECY 118

Query: 1144 SRSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKL 965
            SRSIALSPT+VAFANRAMAY+K+K+FEEAENDCTEALNLDDRY+KAYSRRATARKELGKL
Sbjct: 119  SRSIALSPTSVAFANRAMAYLKLKRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKL 178

Query: 964  KASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKM 791
            KASMED++FA RL+PNNQELRKQ++E KAL +KEI  K  G +KN  QGIQ +  S+M
Sbjct: 179  KASMEDSEFATRLEPNNQELRKQHSETKALYEKEISKKIRGPLKNPFQGIQGVSNSEM 236



 Score =  179 bits (455), Expect = 4e-42
 Identities = 89/153 (58%), Positives = 116/153 (75%)
 Frame = -1

Query: 597 KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPPT 418
           KQ LKAS+++L             K+ITTP++AY+FEVSWRALSD+  LQ +LLK IPP 
Sbjct: 319 KQVLKASMKDLASRAASRVMATAGKSITTPRTAYEFEVSWRALSDDCALQMQLLKTIPPP 378

Query: 417 TLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 238
           TLPQ+FKNALS PILIDIIKC  TFF E+TELAV IL NL +V RFDMI++CLS+ D+++
Sbjct: 379 TLPQIFKNALSVPILIDIIKCTTTFFKEDTELAVNILDNLAKVPRFDMIVMCLSSTDRSE 438

Query: 237 LCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGR 139
           L +IW+EVFSS+ + A+  E L++L  +YC G+
Sbjct: 439 LWQIWEEVFSSKDIAANYIETLSQLRSRYCYGK 471


>ref|XP_009416301.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Musa
            acuminata subsp. malaccensis]
          Length = 412

 Score =  285 bits (730), Expect = 5e-74
 Identities = 146/217 (67%), Positives = 176/217 (81%), Gaps = 8/217 (3%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKKYDYFRNSDAVSG- 1256
            MAG+ S K DRDR++EF+GFLNDL+DWD  L +KD+KLKG A   KK D  +N   + G 
Sbjct: 1    MAGV-SRKPDRDRSMEFKGFLNDLKDWDDLLKDKDEKLKGHARRNKKPDSLQNPGIIDGY 59

Query: 1255 ------ISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1094
                  I S    DEA+PDAASEKELGNEY+KQK++ +AIECYSRSIALSPT+VAFANRA
Sbjct: 60   KEPPRKIYSSNLNDEALPDAASEKELGNEYFKQKRFLEAIECYSRSIALSPTSVAFANRA 119

Query: 1093 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 914
            MAY+K+++FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKAS+EDADFAVRLDPN 
Sbjct: 120  MAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASLEDADFAVRLDPNT 179

Query: 913  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELE 803
            QELRKQY+E+KAL +KE+  + SGA+K + +  Q  +
Sbjct: 180  QELRKQYSEIKALYEKEVANRKSGALKEASKESQRAD 216



 Score =  173 bits (439), Expect = 3e-40
 Identities = 86/150 (57%), Positives = 114/150 (76%)
 Frame = -1

Query: 597 KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPPT 418
           K +LKAS+ ++            AKNIT+P+SAY+FEVSWRALSD+   QA+LLKMIPP 
Sbjct: 256 KHELKASLHDVASRAASRAVASAAKNITSPKSAYEFEVSWRALSDDSA-QAQLLKMIPPY 314

Query: 417 TLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 238
           TLPQ+FKNALSAPIL+DIIKCI TFF E+TELA+++L N+ +V RFDMII+CLSA D ++
Sbjct: 315 TLPQIFKNALSAPILVDIIKCIGTFFKEDTELAISLLDNMVKVPRFDMIIMCLSAKDHSE 374

Query: 237 LCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
           + ++W+E+FS+  +     E LA+L  KYC
Sbjct: 375 VQQVWEEIFSTRYIPVAHTEALARLRPKYC 404


>ref|XP_008246007.1| PREDICTED: RNA polymerase II-associated protein 3 [Prunus mume]
          Length = 411

 Score =  283 bits (723), Expect = 3e-73
 Identities = 145/221 (65%), Positives = 183/221 (82%), Gaps = 13/221 (5%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQ-AHEEK-----------KY 1289
            MA  P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q +H+EK            Y
Sbjct: 1    MARAP-NKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQDSHQEKLKTRDLGTSSGNY 59

Query: 1288 DYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVA 1109
            DY RN D+++ +SS  ++++++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA
Sbjct: 60   DYSRNLDSINTMSSSFTSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVA 119

Query: 1108 FANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVR 929
            +ANRAMAYIKIK F EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+EDA+FA+R
Sbjct: 120  YANRAMAYIKIKSFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDAEFALR 179

Query: 928  LDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQEL 806
            L+P NQE++KQYTE K+L +K I  KTSGA KNS+Q +Q++
Sbjct: 180  LEPQNQEIKKQYTEAKSLYEKTILQKTSGARKNSVQEMQKV 220



 Score =  174 bits (441), Expect = 2e-40
 Identities = 91/158 (57%), Positives = 109/158 (68%)
 Frame = -1

Query: 612 NVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLK 433
           N   RKQ++KASVQEL            A+ IT P SAYQFEVSWR L+ +   Q  LLK
Sbjct: 254 NNTTRKQEVKASVQELASRAASRVKAVAAEKITPPNSAYQFEVSWRGLAGDNAGQTSLLK 313

Query: 432 MIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSA 253
            I P+ LPQ+FKNAL+ PIL+DIIKC+ATFF+EE +LAV  L NLT+V RFD +I+ LS+
Sbjct: 314 AISPSALPQIFKNALTVPILLDIIKCVATFFIEEIDLAVNYLENLTRVPRFDTLIMFLSS 373

Query: 252 ADKADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGR 139
           +D ADL KIWDEVF +EA     AE L  LH KYCP R
Sbjct: 374 SDNADLVKIWDEVFDNEATPIEYAEKLDNLHTKYCPKR 411


>ref|XP_009373288.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Pyrus x
            bretschneideri]
          Length = 411

 Score =  282 bits (721), Expect = 6e-73
 Identities = 141/219 (64%), Positives = 179/219 (81%), Gaps = 12/219 (5%)
 Frame = -3

Query: 1417 PSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK-----------YDYFRN 1274
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++K           YDY RN
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEKLTRDSGTSSENYDYSRN 63

Query: 1273 SDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1094
             DA+  ISS L +++++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR 
Sbjct: 64   FDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRG 123

Query: 1093 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 914
            MA IKIK+F+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+N
Sbjct: 124  MACIKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHN 183

Query: 913  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERS 797
            QE+++QYTE K+L DK    K SGA+KNS+Q +Q+  +S
Sbjct: 184  QEIKRQYTEAKSLYDKSNLQKASGALKNSVQEMQKRGKS 222



 Score =  171 bits (433), Expect = 1e-39
 Identities = 92/153 (60%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
 Frame = -1

Query: 603 NRKQQLKASVQELXXXXXXXXXXXXA-KNITTPQSAYQFEVSWRALSDEPLLQARLLKMI 427
           N+KQ++KASVQEL            A KNIT P +AYQFEVSWR LS +  LQA LLK I
Sbjct: 256 NKKQEVKASVQELASRAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSI 315

Query: 426 PPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAAD 247
            P+ LPQ+FKNAL+ PILIDIIKC+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++
Sbjct: 316 SPSALPQIFKNALTVPILIDIIKCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSN 375

Query: 246 KADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
           KADL KIWDEVF ++A     AE L  L  KYC
Sbjct: 376 KADLDKIWDEVFYNDATPIEYAEKLGNLRAKYC 408


>ref|XP_009373287.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Pyrus x
            bretschneideri]
          Length = 412

 Score =  281 bits (720), Expect = 7e-73
 Identities = 141/220 (64%), Positives = 179/220 (81%), Gaps = 13/220 (5%)
 Frame = -3

Query: 1417 PSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK------------YDYFR 1277
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++K            YDY R
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEKLKTRDSGTSSENYDYSR 63

Query: 1276 NSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANR 1097
            N DA+  ISS L +++++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR
Sbjct: 64   NFDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANR 123

Query: 1096 AMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPN 917
             MA IKIK+F+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+
Sbjct: 124  GMACIKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPH 183

Query: 916  NQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERS 797
            NQE+++QYTE K+L DK    K SGA+KNS+Q +Q+  +S
Sbjct: 184  NQEIKRQYTEAKSLYDKSNLQKASGALKNSVQEMQKRGKS 223



 Score =  171 bits (433), Expect = 1e-39
 Identities = 92/153 (60%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
 Frame = -1

Query: 603 NRKQQLKASVQELXXXXXXXXXXXXA-KNITTPQSAYQFEVSWRALSDEPLLQARLLKMI 427
           N+KQ++KASVQEL            A KNIT P +AYQFEVSWR LS +  LQA LLK I
Sbjct: 257 NKKQEVKASVQELASRAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSI 316

Query: 426 PPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAAD 247
            P+ LPQ+FKNAL+ PILIDIIKC+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++
Sbjct: 317 SPSALPQIFKNALTVPILIDIIKCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSN 376

Query: 246 KADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
           KADL KIWDEVF ++A     AE L  L  KYC
Sbjct: 377 KADLDKIWDEVFYNDATPIEYAEKLGNLRAKYC 409


>ref|XP_008388472.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Malus
            domestica]
          Length = 411

 Score =  280 bits (715), Expect = 3e-72
 Identities = 139/215 (64%), Positives = 175/215 (81%), Gaps = 12/215 (5%)
 Frame = -3

Query: 1417 PSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-----------KYDYFRN 1274
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++            YDY RN
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEXLTRDSGTSSGNYDYSRN 63

Query: 1273 SDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1094
             DA+  ISS L +++++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR 
Sbjct: 64   FDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRG 123

Query: 1093 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 914
            MAYIKI++F+EAE+DCT ALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+N
Sbjct: 124  MAYIKIRRFQEAEDDCTXALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHN 183

Query: 913  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQE 809
            QE++KQYTE K+L DK    K SGA+KNS+Q  Q+
Sbjct: 184  QEIKKQYTEAKSLYDKSNLEKASGALKNSVQEXQK 218



 Score =  167 bits (424), Expect = 2e-38
 Identities = 91/153 (59%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
 Frame = -1

Query: 603 NRKQQLKASVQELXXXXXXXXXXXXA-KNITTPQSAYQFEVSWRALSDEPLLQARLLKMI 427
           N+K ++KASVQEL            A KNIT P +AYQFEVSWR LS +  LQA LLK I
Sbjct: 256 NKKLEVKASVQELASRAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSI 315

Query: 426 PPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAAD 247
            P+ LPQ+FKNAL+ PILIDII C+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++
Sbjct: 316 SPSALPQIFKNALTVPILIDIINCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSN 375

Query: 246 KADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
           KADL KIWDEVF +EA     AE L  L  KYC
Sbjct: 376 KADLDKIWDEVFYNEATPIEYAEKLGNLRAKYC 408


>ref|XP_008388471.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Malus
            domestica]
          Length = 412

 Score =  279 bits (714), Expect = 4e-72
 Identities = 139/216 (64%), Positives = 175/216 (81%), Gaps = 13/216 (6%)
 Frame = -3

Query: 1417 PSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK------------KYDYFR 1277
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++             YDY R
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEXLKTRDSGTSSGNYDYSR 63

Query: 1276 NSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANR 1097
            N DA+  ISS L +++++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR
Sbjct: 64   NFDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANR 123

Query: 1096 AMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPN 917
             MAYIKI++F+EAE+DCT ALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+
Sbjct: 124  GMAYIKIRRFQEAEDDCTXALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPH 183

Query: 916  NQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQE 809
            NQE++KQYTE K+L DK    K SGA+KNS+Q  Q+
Sbjct: 184  NQEIKKQYTEAKSLYDKSNLEKASGALKNSVQEXQK 219



 Score =  167 bits (424), Expect = 2e-38
 Identities = 91/153 (59%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
 Frame = -1

Query: 603 NRKQQLKASVQELXXXXXXXXXXXXA-KNITTPQSAYQFEVSWRALSDEPLLQARLLKMI 427
           N+K ++KASVQEL            A KNIT P +AYQFEVSWR LS +  LQA LLK I
Sbjct: 257 NKKLEVKASVQELASRAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSI 316

Query: 426 PPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAAD 247
            P+ LPQ+FKNAL+ PILIDII C+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++
Sbjct: 317 SPSALPQIFKNALTVPILIDIINCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSN 376

Query: 246 KADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
           KADL KIWDEVF +EA     AE L  L  KYC
Sbjct: 377 KADLDKIWDEVFYNEATPIEYAEKLGNLRAKYC 409


>ref|XP_009416309.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X5 [Musa
            acuminata subsp. malaccensis]
          Length = 408

 Score =  278 bits (711), Expect = 8e-72
 Identities = 145/217 (66%), Positives = 174/217 (80%), Gaps = 8/217 (3%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKKYDYFRNSDAVSG- 1256
            MAG+ S K DRDR++EF+GFLNDL+DWD  L +KD+KLKG A   KK     N   + G 
Sbjct: 1    MAGV-SRKPDRDRSMEFKGFLNDLKDWDDLLKDKDEKLKGHARRNKK----PNPGIIDGY 55

Query: 1255 ------ISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1094
                  I S    DEA+PDAASEKELGNEY+KQK++ +AIECYSRSIALSPT+VAFANRA
Sbjct: 56   KEPPRKIYSSNLNDEALPDAASEKELGNEYFKQKRFLEAIECYSRSIALSPTSVAFANRA 115

Query: 1093 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 914
            MAY+K+++FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKAS+EDADFAVRLDPN 
Sbjct: 116  MAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASLEDADFAVRLDPNT 175

Query: 913  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELE 803
            QELRKQY+E+KAL +KE+  + SGA+K + +  Q  +
Sbjct: 176  QELRKQYSEIKALYEKEVANRKSGALKEASKESQRAD 212



 Score =  173 bits (439), Expect = 3e-40
 Identities = 86/150 (57%), Positives = 114/150 (76%)
 Frame = -1

Query: 597 KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPPT 418
           K +LKAS+ ++            AKNIT+P+SAY+FEVSWRALSD+   QA+LLKMIPP 
Sbjct: 252 KHELKASLHDVASRAASRAVASAAKNITSPKSAYEFEVSWRALSDDSA-QAQLLKMIPPY 310

Query: 417 TLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 238
           TLPQ+FKNALSAPIL+DIIKCI TFF E+TELA+++L N+ +V RFDMII+CLSA D ++
Sbjct: 311 TLPQIFKNALSAPILVDIIKCIGTFFKEDTELAISLLDNMVKVPRFDMIIMCLSAKDHSE 370

Query: 237 LCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
           + ++W+E+FS+  +     E LA+L  KYC
Sbjct: 371 VQQVWEEIFSTRYIPVAHTEALARLRPKYC 400


>ref|XP_012088892.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Jatropha curcas]
          Length = 468

 Score =  275 bits (703), Expect = 7e-71
 Identities = 142/234 (60%), Positives = 177/234 (75%), Gaps = 22/234 (9%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1295
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1294 -------KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1136
                   ++DY RN DA+  I S    +E+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1135 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 956
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 955  MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSK 794
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSE 233



 Score =  183 bits (464), Expect = 3e-43
 Identities = 96/155 (61%), Positives = 111/155 (71%)
 Frame = -1

Query: 600 RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPP 421
           RKQ LKASVQEL            AKNIT P SAYQFEVSWR  S + +LQ RLLK + P
Sbjct: 315 RKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDRVLQTRLLKAMSP 374

Query: 420 TTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKA 241
           + LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V RFDM+I+CLSAADKA
Sbjct: 375 SALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKVPRFDMLIMCLSAADKA 434

Query: 240 DLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGRW 136
           DL KIWDEVF  EA     AE+L  L  KYCP +W
Sbjct: 435 DLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 468


>ref|XP_012088891.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Jatropha curcas]
          Length = 475

 Score =  275 bits (703), Expect = 7e-71
 Identities = 142/234 (60%), Positives = 177/234 (75%), Gaps = 22/234 (9%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1295
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1294 -------KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1136
                   ++DY RN DA+  I S    +E+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1135 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 956
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 955  MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSK 794
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSE 233



 Score =  183 bits (464), Expect = 3e-43
 Identities = 96/155 (61%), Positives = 111/155 (71%)
 Frame = -1

Query: 600 RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPP 421
           RKQ LKASVQEL            AKNIT P SAYQFEVSWR  S + +LQ RLLK + P
Sbjct: 322 RKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDRVLQTRLLKAMSP 381

Query: 420 TTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKA 241
           + LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V RFDM+I+CLSAADKA
Sbjct: 382 SALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKVPRFDMLIMCLSAADKA 441

Query: 240 DLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGRW 136
           DL KIWDEVF  EA     AE+L  L  KYCP +W
Sbjct: 442 DLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 475


>ref|XP_012088890.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Jatropha curcas]
          Length = 476

 Score =  275 bits (703), Expect = 7e-71
 Identities = 142/234 (60%), Positives = 177/234 (75%), Gaps = 22/234 (9%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1295
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1294 -------KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1136
                   ++DY RN DA+  I S    +E+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1135 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 956
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 955  MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSK 794
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSE 233



 Score =  183 bits (464), Expect = 3e-43
 Identities = 96/155 (61%), Positives = 111/155 (71%)
 Frame = -1

Query: 600 RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPP 421
           RKQ LKASVQEL            AKNIT P SAYQFEVSWR  S + +LQ RLLK + P
Sbjct: 323 RKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDRVLQTRLLKAMSP 382

Query: 420 TTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKA 241
           + LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V RFDM+I+CLSAADKA
Sbjct: 383 SALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKVPRFDMLIMCLSAADKA 442

Query: 240 DLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGRW 136
           DL KIWDEVF  EA     AE+L  L  KYCP +W
Sbjct: 443 DLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 476


>gb|KDP23389.1| hypothetical protein JCGZ_23222 [Jatropha curcas]
          Length = 469

 Score =  275 bits (703), Expect = 7e-71
 Identities = 142/234 (60%), Positives = 177/234 (75%), Gaps = 22/234 (9%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1295
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1294 -------KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1136
                   ++DY RN DA+  I S    +E+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1135 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 956
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 955  MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSK 794
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSE 233



 Score =  183 bits (464), Expect = 3e-43
 Identities = 96/155 (61%), Positives = 111/155 (71%)
 Frame = -1

Query: 600 RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLKMIPP 421
           RKQ LKASVQEL            AKNIT P SAYQFEVSWR  S + +LQ RLLK + P
Sbjct: 316 RKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDRVLQTRLLKAMSP 375

Query: 420 TTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKA 241
           + LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V RFDM+I+CLSAADKA
Sbjct: 376 SALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKVPRFDMLIMCLSAADKA 435

Query: 240 DLCKIWDEVFSSEAVMAHQAEMLAKLHLKYCPGRW 136
           DL KIWDEVF  EA     AE+L  L  KYCP +W
Sbjct: 436 DLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 469


>ref|XP_006382393.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337753|gb|ERP60190.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 402

 Score =  271 bits (692), Expect = 1e-69
 Identities = 138/236 (58%), Positives = 176/236 (74%), Gaps = 24/236 (10%)
 Frame = -3

Query: 1429 MAGIPSNKHDRDRTLEFQGFLNDLQDWDHYLEKDKKLKGQAHEEK--------------- 1295
            MA +P  KH RD+ L+FQGFLNDLQDW+   + DKK+K ++                   
Sbjct: 1    MARVPG-KHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSRASDVKIGEDGRSEGKTSA 59

Query: 1294 ---------KYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYS 1142
                     +Y+Y RN  A++ +SS  +TDE   DA +EKELGNEY+KQKK+ +AIECYS
Sbjct: 60   ADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYS 119

Query: 1141 RSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLK 962
            RSIALSPTAVA+ANRAMAY+KIK+F EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK
Sbjct: 120  RSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 179

Query: 961  ASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSK 794
             S+ED++FA++L+PNNQE++KQY EVK+L +KEI  K SG +++S+QG Q+  RS+
Sbjct: 180  ESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKEILQKASGTLRSSLQGTQQGGRSE 235



 Score =  101 bits (251), Expect = 2e-18
 Identities = 53/91 (58%), Positives = 62/91 (68%)
 Frame = -1

Query: 612 NVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLK 433
           N   R+Q+LK SV EL            AKNIT P SAYQFEVSW+  S +  LQA LLK
Sbjct: 311 NNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLK 370

Query: 432 MIPPTTLPQLFKNALSAPILIDIIKCIATFF 340
           +  P+ LPQ+FKNALS PILIDIIKC+A+FF
Sbjct: 371 VTSPSALPQIFKNALSVPILIDIIKCVASFF 401


>ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 4 [Theobroma cacao] gi|508719766|gb|EOY11663.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 4 [Theobroma cacao]
          Length = 421

 Score =  270 bits (691), Expect = 2e-69
 Identities = 138/232 (59%), Positives = 176/232 (75%), Gaps = 25/232 (10%)
 Frame = -3

Query: 1414 SNKHDRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE-------------------- 1298
            ++KH RD+ L+FQGFLN+LQDW+  L EKDK +K QA ++                    
Sbjct: 2    ASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSS 61

Query: 1297 ----KKYDYFRNSDAVSGISSGLSTDEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIA 1130
                ++YDY +N D  + +SS   T+E +PDAASEKELGNEY+KQKK+K+AI+CYSRSI 
Sbjct: 62   TTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIG 121

Query: 1129 LSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASME 950
            LSPTAVA ANRAMAY+KIKKF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+E
Sbjct: 122  LSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 181

Query: 949  DADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSK 794
            D +FA+RL+PNNQE++KQ+ E K+L +KEI  K SG ++ S+Q  QE+ +S+
Sbjct: 182  DTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSE 233



 Score =  173 bits (439), Expect = 3e-40
 Identities = 89/155 (57%), Positives = 110/155 (70%)
 Frame = -1

Query: 612 NVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPLLQARLLK 433
           N   RK +LKASVQEL            AKNI+ P +AYQFEVSWRALS +  LQA LLK
Sbjct: 264 NNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLK 323

Query: 432 MIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSA 253
           +  P+ LPQ+FKNALSA +L+DIIKC+ATFF EE +LA+  L NLT+V RFDM+I+CLS+
Sbjct: 324 VTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSS 383

Query: 252 ADKADLCKIWDEVFSSEAVMAHQAEMLAKLHLKYC 148
            +KADL K+WD+VF +EA     AE+L  L   YC
Sbjct: 384 TEKADLLKVWDDVFCNEATPIEWAEILDNLRSVYC 418