BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00015651
         (2509 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   981   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   958   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     941   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   938   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   937   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   936   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           935   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     916   0.0  
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   909   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   907   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     906   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              886   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              883   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              882   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              877   0.0  
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892...   868   0.0  
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   864   0.0  
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               862   0.0  
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                862   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  860   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  981 bits (2537), Expect = 0.0
 Identities = 489/829 (58%), Positives = 618/829 (74%), Gaps = 13/829 (1%)
 Frame = +2

Query: 62   LGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSRR 241
            L FCEHCVFGK  + KF  AIHRT+GTLDY+HSD WGP +V SLGG  +FV+ +DD+SR 
Sbjct: 443  LEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRM 502

Query: 242  VWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRHF 421
             WVY MKHK E    F +WK ++E QTG+KIKRLR+DNG E+    F   C+DEGI RH 
Sbjct: 503  TWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHR 562

Query: 422  TVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGKT 601
            TV  TPQQNGVAERMN+T+LE+ RCMLSN+GL + FW EAV+ AC+LINR P   I  KT
Sbjct: 563  TVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKT 622

Query: 602  PIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASKK 781
            P+E+WSGK A DY  L  FGC AY+HV+E KL+PRAKK +F+G+  GVKG+R+W PA K+
Sbjct: 623  PMEMWSGK-AADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKR 681

Query: 782  LVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSAQEP 961
            +++SR+V FDES + +   +  +  E+ + DK  QVEF +I  ES   + +EE+   Q  
Sbjct: 682  VIMSRNVVFDESPLLRTIVKPTTTSETGSLDK--QVEFQVIQNESDLKEPEEEDQEPQTE 739

Query: 962  -------PQEQADSIATTKPKR-NIRKPQR--FTDMVAYALPMVEEC---VPTTYKEAKR 1102
                   P +   SIA  +P+R  +R P R  F DMV YAL + EE     P+TYKEA  
Sbjct: 740  TDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAIL 799

Query: 1103 HSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSVRYKARL 1282
             S+S +W  AM +EM+SLHKN TW+LV  P+ +K I CKWV+  KEG    + V+YKAR+
Sbjct: 800  SSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARV 859

Query: 1283 VAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYM 1462
            VA+G+ Q+EG+DYNE+FSPVV+H+SIR+LLA+VA  +LEL QLDVKTAFLHG+L EEIYM
Sbjct: 860  VARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYM 919

Query: 1463 TQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQ 1642
            TQPDG++V GKE+  CKLKKSLYGLKQSPRQWYKRFD +M+   YTRSS+D CVYY  L 
Sbjct: 920  TQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLN 979

Query: 1643 NGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKV 1822
            + +FIYL+LYVDDMLIA+K+  +I+KLK  +S EFEMKDLG A+KILGMEI RDR + K+
Sbjct: 980  DDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKL 1039

Query: 1823 CLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGS 2002
             LSQ+ Y++K+L RFGM + +KP+ TP A++  L+A  +P +++E++YM+ V Y SAVGS
Sbjct: 1040 FLSQRSYIQKVLARFGM-SSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGS 1098

Query: 2003 LMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQH 2182
            LMYAMVCTRPD++ AVS+VSR+M  PG+ HWQAVK I RY+ GT D+GL++  D      
Sbjct: 1099 LMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQC--L 1156

Query: 2183 VVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEA 2362
            V GY DSDYAGD+D RRS TGYVFTL    VSW++TLQ TV LSTTEAEYMA+TEA KE 
Sbjct: 1157 VTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEG 1216

Query: 2363 IWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            IWL+GL+ D+G+  +   V+CDS SAICL KDQVHH RTKHIDVRYHF+
Sbjct: 1217 IWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFL 1265


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  958 bits (2477), Expect = 0.0
 Identities = 490/832 (58%), Positives = 603/832 (72%), Gaps = 15/832 (1%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            KL FCEHC+FGK  +VKF T+ H T+G LDYVHSD+WGP +  S GG  Y +T VDD+SR
Sbjct: 671  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSR 730

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHK +  +VF +WK M+E QT RK+K LR+DNG E+ S  F   C+ EGIVRH
Sbjct: 731  KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRH 790

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
            +TV  TPQQNGVAERMNRTI+ K RC+LSN+GL K FW EAV+ AC+LINR PS AID K
Sbjct: 791  YTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKK 850

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG PA +Y  L +FGC AY HV   KL+PRA K IFLG+ SGVKGY+LWCP +K
Sbjct: 851  TPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK 909

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDII--------PIESKGDDTD 934
            K+V+SR+V F ES M           ES+    S QVE  I          +    D+  
Sbjct: 910  KVVISRNVVFHESVMLHDKPSTNVPVESQ-EKASVQVEHLISSGHAPEKEDVAINQDEPV 968

Query: 935  EEETSAQEPPQEQADSIATTKPKRNIRKPQRF---TDMVAYALPMVEE----CVPTTYKE 1093
             E++++    Q    SIA  +PKRNI+ PQR+    ++VAYAL + EE      P+TY E
Sbjct: 969  IEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSE 1028

Query: 1094 AKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSVRYK 1273
            A    +   W  AM +EM+SL KN TWELV+LP EKK I CKW++  KEG    D  RYK
Sbjct: 1029 AIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYK 1088

Query: 1274 ARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEE 1453
            ARL+AKGY+Q  GID+N+VFSPVVKHSSIR LL++VA  D EL Q+DVKTAFLHG+L E+
Sbjct: 1089 ARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 1148

Query: 1454 IYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYR 1633
            IYM QP G+ V GKE+L C+LKKSLYGLKQSPRQWYKRFD FM+ QK+ RS++D CVY +
Sbjct: 1149 IYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK 1208

Query: 1634 ELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQ 1813
             + +G+ IYLLLYVDDMLIA+K   EI KLK Q+S EFEMKDLG AKKILGMEI R R  
Sbjct: 1209 -VVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHS 1267

Query: 1814 GKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSA 1993
             K+ LSQK Y++K+L+RF M    KPVSTPLA+HF+LS+ + P +D + +YM+ V Y SA
Sbjct: 1268 FKLYLSQKGYIEKVLRRFNMH-DAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSA 1326

Query: 1994 VGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSI 2173
            VGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+ GT    L F R    
Sbjct: 1327 VGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRS--- 1383

Query: 2174 GQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAI 2353
               +VGYVDSD+AGDLD+ RS  GYVFT+    VSW+++LQ+TVALSTTEAEYMA++EA 
Sbjct: 1384 RDGLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEAC 1443

Query: 2354 KEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            KEAIWL+GL   +      +++ CDSQSAICLTKDQ+ H RTKHIDVRYHF+
Sbjct: 1444 KEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFI 1495


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  941 bits (2431), Expect = 0.0
 Identities = 483/837 (57%), Positives = 603/837 (72%), Gaps = 20/837 (2%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            KL FCEHC+FGK  +VKF T+ H T+G LDYVHSD+WGP +  S GG  Y +T VDD+SR
Sbjct: 373  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSR 432

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHK +  +VF +WK M+E QT RK+K LR+DNG E  S  F   C+ EGIVRH
Sbjct: 433  KVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRH 492

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
            +TV  TPQQNGVAERMNRTI+ K RCMLSN+ L K FW EAV+ AC+LINR PS AID K
Sbjct: 493  YTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKK 552

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG PA +Y  L +FGC AY HV   KL+PR  K IFLG+ SGVKGY+LWCP +K
Sbjct: 553  TPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK 611

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSAQE 958
            K+V+SR+V F ES M           ES+     ++V   +  + S G   ++E+ +  +
Sbjct: 612  KVVISRNVVFHESIMLHDKPSTNVPVESQ-----EKVSVQVEHLISSGHAPEKEDVAINQ 666

Query: 959  --PPQEQAD----------SIATTKPKRNIRKPQRF---TDMVAYALPMVEE----CVPT 1081
              P  E +D          SIA  +PKRN + P+R+    ++VAYAL + EE      P+
Sbjct: 667  DAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPS 726

Query: 1082 TYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDS 1261
            TY +A    +   W  AM +EM+SL KN +WEL +LP EKK I CKW++  KEG    D 
Sbjct: 727  TYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDE 786

Query: 1262 VRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGD 1441
             RYKARLVAKGY+Q  GID+N+VFSPVVKHSSIR LL++VA  D EL Q+DVKTAFLHG+
Sbjct: 787  ARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGE 846

Query: 1442 LNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHC 1621
            L E+IYM QP+G+ V GKE+L C+LKKSLYGLKQSPRQWYKRFD FM+ QK+ RS++D C
Sbjct: 847  LEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSC 906

Query: 1622 VYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQR 1801
            VY + + +G+ IYLLLYVDDMLIA+K   EI KLK Q+S EFEMKDLG AKKILGMEI R
Sbjct: 907  VYLK-VVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITR 965

Query: 1802 DRVQGKVCLSQKQYLKKILQRFGM-DAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHV 1978
            +R  GK+ LSQK Y++K+L RF M DAK   VST LA+HF+LS+ + P +  + +YM+ V
Sbjct: 966  ERHSGKLYLSQKCYIEKVLHRFNMHDAKL--VSTLLAAHFRLSSDLCPQSAYDIEYMSRV 1023

Query: 1979 SYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQ 2158
             Y SAV SLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+ GT    L F 
Sbjct: 1024 PYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFG 1083

Query: 2159 RDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMA 2338
            R       +VGYVDSD+AGDLD+RRS TGYVFT+    VSW+++LQ+TVALSTTEAEYMA
Sbjct: 1084 RS---SDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMA 1140

Query: 2339 VTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            ++EA KE IWL+GL  ++      +++ CDSQSAICLTKDQ+ H RTKHID+RYHF+
Sbjct: 1141 ISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDLRYHFI 1197


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  938 bits (2424), Expect = 0.0
 Identities = 477/840 (56%), Positives = 589/840 (70%), Gaps = 23/840 (2%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            K+ FCEHC+FGK  +V+F T++H T+GTLDYVH+D+WGP+K  SLGG  Y +T +DD+SR
Sbjct: 456  KIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSR 515

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHKD+    F  WK MIE QT RK+K LR+DNGGE+ S  F   C+ EGIVRH
Sbjct: 516  KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
             T+  TPQQNGVAERMNRTI+ + RCMLS++ + K FW EA + AC+LINR PS  ++ K
Sbjct: 576  HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG PA DY +L +FGC AY HV   KL+PRA K +FLG+ SGVKGY+LW P + 
Sbjct: 636  TPIEVWSGMPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG 694

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVE-------FDIIPIESKGD---- 925
            K  +SR V F+ES M+  +  +    E +      QVE         + P+  + D    
Sbjct: 695  KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNND 754

Query: 926  --DTDEEETSAQEPPQEQADS---IATTKPKRNIRKPQRFTD---MVAYALPMVEEC--- 1072
              D D  +   Q PP  Q +    IA  K KR  + P+R  +   +  YAL   E+    
Sbjct: 755  VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENV 814

Query: 1073 -VPTTYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSP 1249
              P TYKEA R  +S  W +AM EEM+SL KN TWE+V LP +KK I CKW++  KEG  
Sbjct: 815  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLS 874

Query: 1250 GKDSVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAF 1429
              +  +YKARLVA+GY+Q  G+DYN+VFSPVVKHSSIR  L++VA  DLEL QLDVKTAF
Sbjct: 875  SSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934

Query: 1430 LHGDLNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSS 1609
            LHG+L E+IYM QP+G+ V GKE   CKLK+SLYGLKQSPRQW KRFD FM+   + RS 
Sbjct: 935  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994

Query: 1610 FDHCVYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGM 1789
            +D CVY + + NG+ IYLLLYVDDMLIA+K  +EI KLK  +S EF+MKDLG AKKILGM
Sbjct: 995  YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1053

Query: 1790 EIQRDRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYM 1969
            EI RDR  G + LSQ  Y+KK+LQRF M    K VSTP+A HFKLSA   PS D E +YM
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVLQRFNMQ-NAKAVSTPIAPHFKLSAAQCPSIDAEIEYM 1112

Query: 1970 AHVSYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGL 2149
            + V Y SAVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+ GT    L
Sbjct: 1113 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCL 1172

Query: 2150 VFQRDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAE 2329
             F R D   + ++GYVDSDYA DLD+RRS TGYVFT+    VSWR+TLQS VALSTTEAE
Sbjct: 1173 KFGRTD---KGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229

Query: 2330 YMAVTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            YMA+ EA KE IWL+GL  ++      + +HCDSQSAI LTKDQ+ H RTKHID++YHFV
Sbjct: 1230 YMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFV 1289


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  937 bits (2422), Expect = 0.0
 Identities = 476/840 (56%), Positives = 589/840 (70%), Gaps = 23/840 (2%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            K+ FCEHC+FGK  +V+F T++H T+GTLDYVH+D+WGP+K  SLGG  Y +T +DD+SR
Sbjct: 456  KIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSR 515

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHKD+    F  WK MIE QT RK+K LR+DNGGE+ S  F   C+ EGIVRH
Sbjct: 516  KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
             T+  TPQQNGVAERMNRTI+ + RCMLS++ + K FW EA + AC+LINR PS  ++ K
Sbjct: 576  HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG PA DY +L +FGC AY HV   KL+PRA K +FLG+ SGVKGY+LW P + 
Sbjct: 636  TPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG 694

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVE-------FDIIPIESKGD---- 925
            K  +SR V F+ES M+  +  +    E +      QVE         + P+  + D    
Sbjct: 695  KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVHEQDDHNND 754

Query: 926  --DTDEEETSAQEPPQEQADS---IATTKPKRNIRKPQRFTD---MVAYALPMVEEC--- 1072
              D D  +   Q PP  Q +    IA  K KR  + P+R  +   +  YAL   E+    
Sbjct: 755  VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENV 814

Query: 1073 -VPTTYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSP 1249
              P TYKEA R  +S  W +AM EEM+SL KN TWE+V LP +KK I CKW++  KEG  
Sbjct: 815  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLS 874

Query: 1250 GKDSVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAF 1429
              +  +YKARLVA+GY+Q  G+DYN+VFSPVVKHSSIR  L++VA  DLEL QLDVKTAF
Sbjct: 875  SSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934

Query: 1430 LHGDLNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSS 1609
            LHG+L E+IYM QP+G+ V GKE   CKLK+SLYGLKQSPRQW KRFD FM+   + RS 
Sbjct: 935  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994

Query: 1610 FDHCVYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGM 1789
            +D CVY + + NG+ IYLLLYVDDMLIA+K  +EI KLK  +S EF+MKDLG AKKILGM
Sbjct: 995  YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1053

Query: 1790 EIQRDRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYM 1969
            EI RDR  G + LSQ  Y+KK+LQRF M    K VSTP+A HFKLSA   PS D E +YM
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVLQRFNMQ-NAKAVSTPIAPHFKLSAAQCPSIDAEIEYM 1112

Query: 1970 AHVSYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGL 2149
            + V Y SAVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+ GT    L
Sbjct: 1113 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCL 1172

Query: 2150 VFQRDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAE 2329
             F R D   + ++GYVDSDYA DLD+RRS TGYVFT+    VSWR+TLQS VALSTTEAE
Sbjct: 1173 KFGRTD---KGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229

Query: 2330 YMAVTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            YMA+ EA KE IWL+GL  ++      + +HCDS+SAI LTKDQ+ H RTKHID++YHFV
Sbjct: 1230 YMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFV 1289


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  936 bits (2418), Expect = 0.0
 Identities = 476/840 (56%), Positives = 588/840 (70%), Gaps = 23/840 (2%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            K+ FCEHC+FGK  +V+F T++H T+GTLDYVH+D+WGP+K  SLGG  Y +T +DD+SR
Sbjct: 456  KIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSR 515

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHKD+    F  WK MIE QT RK+K LR+DNGGE+ S  F   C+ EGIVRH
Sbjct: 516  KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRH 575

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
             T+  TPQQNGVAERMNRTI+ + RCMLS++ + K FW EA + AC+LINR PS  ++ K
Sbjct: 576  HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 635

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG PA DY +L +FGC AY HV   KL+PRA K +FLG+ SGVKGY+LW P + 
Sbjct: 636  TPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG 694

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVE-------FDIIPIESKGD---- 925
            K  +SR V F+ES M+  +  +    E +      QVE         + P+  + D    
Sbjct: 695  KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDYTGVQVEPVHEQDDHNND 754

Query: 926  --DTDEEETSAQEPPQEQADS---IATTKPKRNIRKPQRFTD---MVAYALPMVEEC--- 1072
              D D  +   Q PP  Q +    IA  K KR  + P+R  +   +  YAL   E+    
Sbjct: 755  VADDDAHDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENV 814

Query: 1073 -VPTTYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSP 1249
              P TYKEA R  +S  W +AM EEM+SL KN TWE+V LP +KK I CKW++  KEG  
Sbjct: 815  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLS 874

Query: 1250 GKDSVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAF 1429
              +  +YKARLVA+GY+Q  G+DYN+VFSPVVKHSSIR  L++VA  DLEL QLDVKTAF
Sbjct: 875  SSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 934

Query: 1430 LHGDLNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSS 1609
            LHG+L E+IYM QP+G+ V GKE   CKLK+SLYGLKQSPRQW KRFD FM+   + RS 
Sbjct: 935  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 994

Query: 1610 FDHCVYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGM 1789
            +D CVY + + NG+ IYLLLYVDDMLIA+K  +EI KLK  +S EF+MKDLG AKKIL M
Sbjct: 995  YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVM 1053

Query: 1790 EIQRDRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYM 1969
            EI RDR  G + LSQ  Y+KK+LQRF M    K VSTP+A HFKLSA   PSTD E +YM
Sbjct: 1054 EISRDRKSGLLFLSQHNYIKKVLQRFNMQ-NAKAVSTPIAPHFKLSAAQCPSTDAEIEYM 1112

Query: 1970 AHVSYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGL 2149
            + V Y SAVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+ V+WI RY+ GT    L
Sbjct: 1113 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCL 1172

Query: 2150 VFQRDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAE 2329
             F R D   + ++GYVDSDYA DLD+RRS TGYVFT+    VSWR+TLQS VALSTTEAE
Sbjct: 1173 KFGRTD---KGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1229

Query: 2330 YMAVTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            YMA+ EA KE IWL+GL  ++      + +HCDSQSAI LTKDQ+ H RTKHID++YHFV
Sbjct: 1230 YMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFV 1289


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  935 bits (2416), Expect = 0.0
 Identities = 476/840 (56%), Positives = 590/840 (70%), Gaps = 23/840 (2%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            K+ FCEHC+FGK  +V+F T++H T+GTLDYVH+D+WGP+K  SLGG  Y +T +DD+SR
Sbjct: 458  KIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSR 517

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHKD+    F  WK MIE QT RK+K L +DNGGE+ S  F   C+ EGIVRH
Sbjct: 518  KVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRH 577

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
             T+  TPQQNGVAERMNRTI+ + RCMLS++ + K FW EA + AC+LINR PS  ++ K
Sbjct: 578  HTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKK 637

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG PA DY +L +FGC AY HV   KL+PRA K +FLG+ SGVKGY+LW P + 
Sbjct: 638  TPIEVWSGTPA-DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETG 696

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVE-------FDIIPIESKGD---- 925
            K  +SR V F+ES M+  +  +    E +      QVE         + P++ + D    
Sbjct: 697  KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVEHVDDDTGVQVEPVDEQDDHNND 756

Query: 926  --DTDEEETSAQEPPQEQAD---SIATTKPKRNIRKPQRFTD---MVAYALPMVEEC--- 1072
              D D  +   Q PP  Q +   SIA  K KR  + P+R  +   +  YAL   E+    
Sbjct: 757  VADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENV 816

Query: 1073 -VPTTYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSP 1249
              P TYKEA R  +S  W +AM EEM+SL KN TWE+V LP +KK I CKW++  KE   
Sbjct: 817  HEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALS 876

Query: 1250 GKDSVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAF 1429
              +  +YKARLVA+GY+Q  G+DYN+VFSPVVKHSSIR  L++VA  DLEL QLDVKTAF
Sbjct: 877  LSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAF 936

Query: 1430 LHGDLNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSS 1609
            LHG+L E+IYM QP+G+ V GKE   CKLK+SLYGLKQSPRQW KRFD FM+   + RS 
Sbjct: 937  LHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSK 996

Query: 1610 FDHCVYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGM 1789
            +D CVY + + NG+ IYLLLYVDDMLIA+K  +EI KLK  +S EF+MKDLG AKKILGM
Sbjct: 997  YDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGM 1055

Query: 1790 EIQRDRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYM 1969
            EI RDR  G + LSQ  Y+KK+LQRF M    K VSTP+A HFKLSA   PSTD E +YM
Sbjct: 1056 EISRDRKSGLLFLSQHNYIKKVLQRFNMQ-NAKAVSTPIAPHFKLSAAQCPSTDAEIEYM 1114

Query: 1970 AHVSYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGL 2149
            + V Y SAVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A++WI RY+ GT    L
Sbjct: 1115 SRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCL 1174

Query: 2150 VFQRDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAE 2329
             F R D   + ++GYVDSDYA DLD+RRS TGYVFT+    VSWR+TLQS VALSTTEAE
Sbjct: 1175 KFGRTD---KGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAE 1231

Query: 2330 YMAVTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            YMA+ EA KE IWL+GL  ++      + +HCDSQSAI LTKDQ+ H RTKHID++YHFV
Sbjct: 1232 YMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFV 1291


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  916 bits (2368), Expect = 0.0
 Identities = 475/819 (57%), Positives = 589/819 (71%), Gaps = 19/819 (2%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            KL FCEHC+FGK  +VKF T+ H T+G LDYVHSD+WGP    S GG  Y +T VDD+SR
Sbjct: 436  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSR 495

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHK +  + F +WK M+E QT RK+K LR+DNG E+ S  F   C+ EGIV H
Sbjct: 496  KVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCH 555

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
            +T   TPQQN VAERMNRTI+ K RCMLSN+GL K FW EAV+ AC+LINR P  AID K
Sbjct: 556  YTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKK 615

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPIEVWSG P T+Y  L +FGC AY HV   KL+PRA K IFLG++SGVKGY+LWCP +K
Sbjct: 616  TPIEVWSGSP-TNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETK 674

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSAQE 958
            K+V+SR+V F ES +           ES+    S QVE  I    S G   ++E+ +  +
Sbjct: 675  KVVISRNVVFHESVILHDKPSTNVPVESQEK-ASVQVEHLI----SSGHAPEKEDVAINQ 729

Query: 959  --PPQEQADS----------IATTKPKRNIRKPQRFTD---MVAYALPMVEE----CVPT 1081
              P  E +DS          IA  KPKRNI+ P+R+ +   +VAYAL + E+      P+
Sbjct: 730  DAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPS 789

Query: 1082 TYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDS 1261
            TY EA    +   W  AM +EM+SL KN TWELV+LP EKK I CKW++  KEG    D 
Sbjct: 790  TYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDE 849

Query: 1262 VRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGD 1441
             RYKARLVAKGY+Q  GID+N+VFSPVVKHSSIR LL +VA  D EL Q++VKTAFLHG+
Sbjct: 850  ARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGE 909

Query: 1442 LNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHC 1621
            L E+IYM QP+G+ V GKE+L C+LKKSLYGLKQSPRQWYKRFD FM+ QK+  S++D C
Sbjct: 910  LEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSC 969

Query: 1622 VYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQR 1801
            VY + + +G+ IYLLLYVDDMLIA+K   EIEKLK Q+S EFEMKDLG AKKILGMEI R
Sbjct: 970  VYLK-VVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITR 1028

Query: 1802 DRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVS 1981
            +R  GK+ LSQK Y++K+L+RF M    KPVSTPLA+HF+LS+ + P +D + +YM+ V 
Sbjct: 1029 ERHSGKLYLSQKGYIEKVLRRFNMH-DAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVP 1087

Query: 1982 YQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQR 2161
            Y SAVGSLMYAMVC RPD+S A+S+V+RYM +PGK HW+AV+WI RY+ GT    L F+R
Sbjct: 1088 YSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFER 1147

Query: 2162 DDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAV 2341
                   +VGYVDSD+AGDLD+RRS TGYVFT+    VSW+++LQ+TVALSTTEAEYMA+
Sbjct: 1148 S---RDGLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAI 1204

Query: 2342 TEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKD 2458
             EA KEAIWL+GL  ++      +++ CDSQSAI LTKD
Sbjct: 1205 FEACKEAIWLRGLYTELCGVTSCINIFCDSQSAIYLTKD 1243


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  909 bits (2348), Expect = 0.0
 Identities = 462/835 (55%), Positives = 595/835 (71%), Gaps = 16/835 (1%)
 Frame = +2

Query: 53   TCKLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDF 232
            T KL FCE CV GKQ +VKF    H T G L+Y+HSD+WGP+ V S  G  Y+VTF+DDF
Sbjct: 774  TGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDF 833

Query: 233  SRRVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIV 412
            SR+VWVY +K KDEV   F +WK M+E +TG+ +K LR+DNG E+ +  F   C+ EGIV
Sbjct: 834  SRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIV 893

Query: 413  RHFTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAID 592
            RH TV  TPQQNGVAERMN+T++++ RCM  ++GL K FW EAV  A +L+NR PS AID
Sbjct: 894  RHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAID 953

Query: 593  GKTPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPA 772
             KTP EVWSGKP+ +Y  L IFGCPAY HV++ KL+PRA K IFLG+++GVKGYRLWC  
Sbjct: 954  FKTPQEVWSGKPS-NYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTE 1012

Query: 773  SK--KLVLSRDVTFDESAMWKQNKQNGSQEESKAND--KSKQVEFDI-IPIESKGDDTDE 937
             +  K ++SRDVTFDESAM+ Q K+ G    +   D   +++VEF++  P+E+  DDT E
Sbjct: 1013 DRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSE 1072

Query: 938  EETSAQEPPQEQADSIATTKPKRNIRKPQRFTDMV--------AYALPMVEEC---VPTT 1084
            E+       Q  + SIA  +P+R IR+P R+ D V        A+AL + EE     P +
Sbjct: 1073 EQPVID---QNDSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRS 1129

Query: 1085 YKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSV 1264
            YKEA    +S +W ++MD+EM SL KN TWELV LP   K + CKW++ +K+G    +  
Sbjct: 1130 YKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPP 1189

Query: 1265 RYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDL 1444
            +YK+RLVAK            VFSPVVKH SIR+LLA+V+ F+LEL QLDVKTAFLHG+L
Sbjct: 1190 KYKSRLVAK------------VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNL 1237

Query: 1445 NEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCV 1624
             EEIYM QP+G+  + K    C LKKSLYGLKQSPRQWYKRFD FM+  ++ R+ +D CV
Sbjct: 1238 EEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCV 1297

Query: 1625 YYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRD 1804
            Y++ L +G+FIYLLLYVDDMLIA+K   EI KLK  +S EFEMKDLG AKKILGMEI RD
Sbjct: 1298 YFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRD 1357

Query: 1805 RVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSY 1984
            R  G + +SQ++Y++K++Q F MD  +KPVSTPLA HFK   +  PSTD+E +YM  V Y
Sbjct: 1358 RDAGLLYVSQQKYIEKLMQAFHMD-HSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPY 1416

Query: 1985 QSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRD 2164
             S VGSLMYAMVCTRPD++ AVS+VSR+M +PGK HW+AVKWI+RY+ G+  + LV+   
Sbjct: 1417 SSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNG 1476

Query: 2165 DSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVT 2344
            D +   +VG+ DSD+ GDL KRRS T Y+FTL    +SWR++LQ TVALSTTEAEYM++T
Sbjct: 1477 D-VSSGLVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLT 1535

Query: 2345 EAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            E +KE +WL G L  +G+      ++CDSQSA+CL K+ V+H RTKHIDVR +F+
Sbjct: 1536 EGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFI 1590


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  907 bits (2345), Expect = 0.0
 Identities = 466/827 (56%), Positives = 581/827 (70%), Gaps = 13/827 (1%)
 Frame = +2

Query: 68   FCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSRRVW 247
            FCEHCVFGK  +VKF T++HRT+G LDYVH+D+WGP++  SLGG  Y +T +DD+SR+ W
Sbjct: 460  FCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEW 519

Query: 248  VYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRHFTV 427
             Y +KHKD+    F + K MIE QT +++K L +DNGGE+ SD F   C+ EGIVRH T+
Sbjct: 520  PYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTI 579

Query: 428  SGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGKTPI 607
              TPQQNGVAERMNRTI+ K RCMLSN+ + K FW EA   AC+LINR PS  ++ KTPI
Sbjct: 580  PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPI 639

Query: 608  EVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASKKLV 787
            E+WSG PA DY +L +FGC AY HV   KL+PRA K +FLG+ SGVKGY+LW P + K  
Sbjct: 640  EIWSGMPA-DYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTF 698

Query: 788  LSRDVTFDESAMWKQNK-----QNGSQEESKANDKSKQVE-FDIIPIESKGDDTDEEETS 949
            +SR+V F+E  M+  +        GS EE +    S QVE  D    E  G+D ++    
Sbjct: 699  MSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQY--VSVQVEHVDDQETEIVGNDVNDTVQH 756

Query: 950  AQEPPQEQADSIATTKPKRNIRKPQRF---TDMVAYALPMVEE----CVPTTYKEAKRHS 1108
            +    Q Q + IA  + KR+   P R     DMV YA    E+      P TY EA    
Sbjct: 757  SPSVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSG 816

Query: 1109 ESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSVRYKARLVA 1288
            +  +W +A+ EEM+SL KN TWELV LP +KK + CKW++  KEG    +  R+K RLVA
Sbjct: 817  DREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVA 876

Query: 1289 KGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYMTQ 1468
            KG++Q  G+DYN+VFSPVVKHSSIR   ++V   DLEL QLDVKT FLHG+L EEIYM Q
Sbjct: 877  KGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQ 936

Query: 1469 PDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQNG 1648
            P+G+ V GKE   CKLK+SLYGLKQSPRQWYKRFD FM+   + RS FD CVY +   NG
Sbjct: 937  PEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK-FVNG 995

Query: 1649 TFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKVCL 1828
            + IYLLLYVDDMLIA+K   +I  LK Q+S EF+MKDLG AKKILGMEI RDR  G + L
Sbjct: 996  SPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFL 1055

Query: 1829 SQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGSLM 2008
            SQ+ Y+KK+LQRF M    KPVSTP+A HFKLSA    STD++ +YM+ V Y SAVGSLM
Sbjct: 1056 SQQSYIKKVLQRFNMH-DAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLM 1114

Query: 2009 YAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQHVV 2188
            YAMVC+ PD+S A+S+VSRYM +PGK HW+AV+WI RY+ GT D  L F R   I + +V
Sbjct: 1115 YAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGR---IDKGLV 1171

Query: 2189 GYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEAIW 2368
            GYVDSD+A DLDKRRS TGYVFT+    VSW++TLQ  VA STTEAEYMA+ EA KE++W
Sbjct: 1172 GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVW 1231

Query: 2369 LQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            L+GL  ++      +++ CDSQSAICLTKDQ+ H RTKHID++YH+V
Sbjct: 1232 LKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYV 1278


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  906 bits (2342), Expect = 0.0
 Identities = 460/836 (55%), Positives = 594/836 (71%), Gaps = 22/836 (2%)
 Frame = +2

Query: 62   LGFCEHCVFGKQTKVKFG--TAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFS 235
            L FC +C  GKQT+V F   ++ ++++G LDY+H+DVWGP+   S GG  YFV+F+DDFS
Sbjct: 424  LEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFS 483

Query: 236  RRVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVR 415
            R+VW++ MK K+EV   F +WK  +  QTGRKIK LRSDNGGEY+   FL +C+DEGI R
Sbjct: 484  RKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITR 543

Query: 416  HFTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDG 595
            HFTV  +PQQNGVAERMNRT++EK R M  ++GL + FW EA  +AC+LINR PS AI+ 
Sbjct: 544  HFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINF 603

Query: 596  KTPIEVWSGKPATDYDKLHIFGCPAYFHVTEN---KLDPRAKKAIFLGFSSGVKGYRLWC 766
            K   EVWSGKP  DY  L +FGC AY H+ ++   KL+P++ + +F+GF  GVKGY+LW 
Sbjct: 604  KCAEEVWSGKPV-DYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWD 662

Query: 767  PASKKLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDD------ 928
              ++K V+SRDV FDE      +    S  +S+A  +  +   D + IE           
Sbjct: 663  IVNEKKVISRDVVFDEREAISISLAKPSVADSEAQVEQNEQGNDEVAIEEPEHQQQPTVM 722

Query: 929  --TDEEETSAQEPPQEQAD-----SIATTKPKRNIRKPQRF----TDMVAYALPMVEECV 1075
               ++     Q  P  QA      SIA  KPKRN +  QRF     + V+ AL  + +  
Sbjct: 723  AQVEQSPQRGQNSPIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALS-ISQGD 781

Query: 1076 PTTYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGK 1255
            PTTY++A    ES  W  AM EEM+SLHKN  WELV  P E+K +GCKWV+  KEG    
Sbjct: 782  PTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHED 841

Query: 1256 DSVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLH 1435
            D++ YKARLVAKGY+QKEG+DY+E+FSPVVKH+SIR+LL++ AQ+D+E+ Q+DVKTAFLH
Sbjct: 842  DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLH 901

Query: 1436 GDLNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFD 1615
            GDL E+IYM+QP+G+   GKE+L C+LKKSLYGLKQSPRQWYK FD +M+   YTR  +D
Sbjct: 902  GDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYD 961

Query: 1616 HCVYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEI 1795
             CVYY   ++G  I LLLYVDDMLIA + M++I+KLK ++  EF+MKDLG A+KILG+EI
Sbjct: 962  CCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEI 1021

Query: 1796 QRDRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAH 1975
            +RDR  GK+ LSQ++Y+ KIL+RF M A+ K VS PLA+HF+LSA   PS   E   M +
Sbjct: 1022 RRDRNAGKIWLSQEKYIMKILERFNM-AEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKN 1080

Query: 1976 VSYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVF 2155
            V Y SAVG LMYAM+CTRPD++QA+S+VS+YM +PGK HW+AVKWI +Y+  T  +G++F
Sbjct: 1081 VPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMF 1140

Query: 2156 QRDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYM 2335
            +R       V G+VDSD+AGDLD+RRST GYVFT   GPVSW++TLQ+  ALSTTEAEYM
Sbjct: 1141 ERRQG-EACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYM 1199

Query: 2336 AVTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYH 2503
            A+TEA KEAIWL GL   +G+  E + V CDSQSAI L K+QV H+RTKHID RYH
Sbjct: 1200 ALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYH 1255


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  886 bits (2289), Expect = 0.0
 Identities = 456/829 (55%), Positives = 580/829 (69%), Gaps = 10/829 (1%)
 Frame = +2

Query: 53   TCKLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDF 232
            T  L FCEHCV  KQ ++KF     R++  LD +HSDVW   ++ SLGG  YFV+F+DD+
Sbjct: 452  TVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEL-SLGGARYFVSFIDDY 510

Query: 233  SRRVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIV 412
            SRR+WVY +K K +V  VF  +K  IE +TG+KIK LR+DNGGEY    FL  C+ EGIV
Sbjct: 511  SRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIV 570

Query: 413  RHFTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAID 592
            R FTV+ TPQQNGVAERMNRT+LE+ R ML  +G+ K+FW EAV  AC++INR PS AID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAID 630

Query: 593  GKTPIEVWSGKPATDYDKLHIFGCPAYFHVTEN---KLDPRAKKAIFLGFSSGVKGYRLW 763
             KTP+E+W GKP  DY  LH+FGCP Y         KLDP+++K IFLG++  VKGYRLW
Sbjct: 631  LKTPMEMWKGKPV-DYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 764  CPASKKLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEE 943
             P ++K+V+SRDV F E+ +  + K + + +E+            I+ +E K  ++D  E
Sbjct: 690  DPTARKVVVSRDVVFAENELQSKQKNDSTSKETA-----------IVQMEEKSKESDSSE 738

Query: 944  TSAQEPPQEQAD-SIATTKPKRNIRKPQRFTDMV-----AYALPMVEECVPTTYKEAKRH 1105
                   QE  D +    +  R  +KP   +D V     AY L + EE  P+T+ EA   
Sbjct: 739  AEPVHEEQEPDDVNNGVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNG 797

Query: 1106 SESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSV-RYKARL 1282
            S++ +W  AM EEM++LH+N TWELV+LP  +KAIG KWVY +K    G D V RY+ARL
Sbjct: 798  SDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRD--GNDQVERYRARL 855

Query: 1283 VAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYM 1462
            V KGYAQKEGID+NE+FSPVV+ ++IR++LA+ A  DL L QLDVKTAFLHG+L EEIYM
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 1463 TQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQ 1642
             QP+G+K  GKE+L C+L KSLYGLKQ+PR WYKRFD F+I   Y+R S DHC YY+   
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFD 975

Query: 1643 NGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKV 1822
               FI LLLYVDDML+       +++LK Q++ EF+MKDLG A KILGM+I RDR   K+
Sbjct: 976  GNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKI 1035

Query: 1823 CLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGS 2002
             LSQK YL+K+L+RF M    KP+STPL  +FKLS+ MSPS + ER  M+ V Y SAVGS
Sbjct: 1036 WLSQKNYLRKVLRRFNMQ-DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGS 1094

Query: 2003 LMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQH 2182
            LMYAM+CTRPDI+QAV +VSR+M DPGK HW AVK I+RYI GT  + + F   +     
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELT--- 1151

Query: 2183 VVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEA 2362
            V GYVDSD+AGD DKR+STTGYVFTLA G VSW S LQ+ VALSTTEAEYMA T+A KEA
Sbjct: 1152 VRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEA 1211

Query: 2363 IWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            IW+Q L++++G   E + V+CDSQSA+ + ++   HSRTKHI V+YHFV
Sbjct: 1212 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFV 1260


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  883 bits (2282), Expect = 0.0
 Identities = 454/829 (54%), Positives = 579/829 (69%), Gaps = 10/829 (1%)
 Frame = +2

Query: 53   TCKLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDF 232
            T  L FCEHCV  KQ ++KF     R++  LD +HSDVW   ++ SLGG  YFV+F+DD+
Sbjct: 452  TVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVWESPEI-SLGGARYFVSFIDDY 510

Query: 233  SRRVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIV 412
            SRR+WVY +K K +V  VF  +K  IE +T +KIK LR+DNGGEY    FL  C+ EGIV
Sbjct: 511  SRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIV 570

Query: 413  RHFTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAID 592
            R FTV+ TPQQNGVAERMNRT+LE+ R ML  +G+ K+FW EA   AC++INR PS AID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAID 630

Query: 593  GKTPIEVWSGKPATDYDKLHIFGCPAYFHVT---ENKLDPRAKKAIFLGFSSGVKGYRLW 763
             KTP+E+W GKP  DY  LH+FGCP Y       + KLDP+++K IFLG++  VKGYRLW
Sbjct: 631  LKTPMEMWKGKPV-DYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 764  CPASKKLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEE 943
             P ++K+V+SRDV F E+ +  + K + + +E+            I+ +E K  ++D  E
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQKNDSTSKETA-----------IVQMEEKSKESDSSE 738

Query: 944  TSAQEPPQEQAD-SIATTKPKRNIRKPQRFTDMV-----AYALPMVEECVPTTYKEAKRH 1105
              +    QE  D +    +  R  +KP   +D V     AY L + EE  P+T+ EA   
Sbjct: 739  AESVHEEQEPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNG 797

Query: 1106 SESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSV-RYKARL 1282
            S++ +W  AM EEM++LH+N TWELV+LP  +KAIG KWVY +K    G D V RY+ARL
Sbjct: 798  SDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRD--GNDQVERYRARL 855

Query: 1283 VAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYM 1462
            V KGYAQKEGID+NE+FSPVV+ ++IR++LA+ A  DL L QLDVKTAFLHG+L EEIYM
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 1463 TQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQ 1642
             QP+G+K  GKE+L C+L KSLYGLKQ+PR WYKRFD F+I   Y R S DHC YY+   
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFD 975

Query: 1643 NGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKV 1822
               FI LLLYVDDML+       +++LK Q++ EF+MKDLG A KILGM+I RDR   K+
Sbjct: 976  GNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKI 1035

Query: 1823 CLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGS 2002
             LSQK YL+K+L+RF M    KP+STPL  +FKLS+ MSPS + ER  M+ V Y SAVGS
Sbjct: 1036 WLSQKNYLRKVLRRFNMQ-DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGS 1094

Query: 2003 LMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQH 2182
            LMYAM+CTRPDI+QAV +VSR+M DPGK HW AVK I+RYI GT  + + F   +     
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELT--- 1151

Query: 2183 VVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEA 2362
            V GYVDSD+AGD DKR+STTGYVFTLA G VSW S LQ+ VALSTTEAEYMA T+A KEA
Sbjct: 1152 VWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEA 1211

Query: 2363 IWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            IW+Q L++++G   E + V+CDSQSA+ + ++   HSRTKHI V+YHFV
Sbjct: 1212 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFV 1260


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  882 bits (2280), Expect = 0.0
 Identities = 454/826 (54%), Positives = 579/826 (70%), Gaps = 10/826 (1%)
 Frame = +2

Query: 62   LGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSRR 241
            L FCEHCV  KQ ++KF     R++  LD +HSDVW   ++ SLGG  YFV+F+DD+SRR
Sbjct: 455  LPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEI-SLGGARYFVSFIDDYSRR 513

Query: 242  VWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRHF 421
            +WVY +K K +V  VF  +K  IE +T +KIK LR+DNGGEY    FL  C+ EGIVR F
Sbjct: 514  LWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQF 573

Query: 422  TVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGKT 601
            TV+ TPQQNGVAERMNRT+LE+ R ML  +G+ K+FW EAV  AC++INR PS AID KT
Sbjct: 574  TVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKT 633

Query: 602  PIEVWSGKPATDYDKLHIFGCPAYFHVTEN---KLDPRAKKAIFLGFSSGVKGYRLWCPA 772
            P+E+W GKP  DY  LH+FGCP Y         KLDP+++K IFLG++  VKGYRLW P 
Sbjct: 634  PMEMWKGKPV-DYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPT 692

Query: 773  SKKLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSA 952
            ++K+V+SRDV F E+ +  + K + + +E+            I+ +E K  ++D  E  +
Sbjct: 693  ARKVVVSRDVVFAENELQSEQKNDSTSKETA-----------IVQMEEKSKESDSSEAES 741

Query: 953  QEPPQEQAD-SIATTKPKRNIRKPQRFTDMV-----AYALPMVEECVPTTYKEAKRHSES 1114
                QE  D +    +  R  +KP   +D V     AY L + EE  P+T+ EA   S++
Sbjct: 742  VHEEQEPDDVNDGVRRSTRQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDA 800

Query: 1115 VEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSV-RYKARLVAK 1291
             +W  AM EEM++LH+N TWELV+LP  +KAIG KWVY +K    G D V RY+ARLV K
Sbjct: 801  SQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRD--GNDQVERYRARLVVK 858

Query: 1292 GYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYMTQP 1471
            GYAQKEGID+NE+FSPVV+ ++IR++LA+ A  DL L QLDVKTAFLHG+L EEIYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1472 DGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQNGT 1651
            +G+K  GKE+L C+L KSLYGLKQ+PR WYKRFD F+I   Y+R S DHC YY+      
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 1652 FIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKVCLS 1831
            FI LLLYVDDML+       +++LK Q++ EF+MKDLG A KILGM+I RDR   K+ LS
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLS 1038

Query: 1832 QKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGSLMY 2011
            QK YL+K+L+RF M    KP+STPL  +FKLS+ MSPS + ER  M+ V Y SAVGSLMY
Sbjct: 1039 QKNYLRKVLRRFNMQ-DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMY 1097

Query: 2012 AMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQHVVG 2191
            AM+CTRPDI+QAV +VSR+M DPGK HW AVK I+RYI GT  + + F   +     V G
Sbjct: 1098 AMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELT---VRG 1154

Query: 2192 YVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEAIWL 2371
            YVDSD+AGD DKR+STTGYVFTLA G VSW S LQ+ VALSTTEAEYMA T+A KEAIW+
Sbjct: 1155 YVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWM 1214

Query: 2372 QGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            Q L++++G   E + V+CDSQSA+ + ++   HSRTKHI V+YHFV
Sbjct: 1215 QRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFV 1260


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  877 bits (2265), Expect = 0.0
 Identities = 453/829 (54%), Positives = 576/829 (69%), Gaps = 10/829 (1%)
 Frame = +2

Query: 53   TCKLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDF 232
            T  L FCEHCV  KQ ++KF     R++  LD +HSDVW   K+ SLGG  YFV+F+DD+
Sbjct: 452  TVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPKL-SLGGARYFVSFIDDY 510

Query: 233  SRRVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIV 412
            SRR+WVY +K K +V  VF  +K  IE +TG+KIK LR+DNGGEY    FL  C+ EGIV
Sbjct: 511  SRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIV 570

Query: 413  RHFTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAID 592
            R FTV+ TPQQNGVAERMNRT+LE+ R ML  + + K+FW EAV  AC++INR PS  ID
Sbjct: 571  RQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTID 630

Query: 593  GKTPIEVWSGKPATDYDKLHIFGCPAYFHVTEN---KLDPRAKKAIFLGFSSGVKGYRLW 763
             KTP+E+W GKP  DY  LH+FGCP Y         KLDP+++K IFLG++  VKGYRLW
Sbjct: 631  LKTPMEMWKGKPV-DYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW 689

Query: 764  CPASKKLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEE 943
             P ++K+V+SRDV F E+ +  + K + + +E+            I+ IE K  ++D  E
Sbjct: 690  DPTARKVVVSRDVVFAENELQSEQKNDSTFKETA-----------ILQIEEKSKESDSSE 738

Query: 944  TSAQEPPQEQAD-SIATTKPKRNIRKPQRFTDMV-----AYALPMVEECVPTTYKEAKRH 1105
              +    QE  D +    +  R  +KP   +D V     AY L + EE  P+T+ EA   
Sbjct: 739  AESVHEEQEPDDVNNGVRRSTRQTQKPSWQSDYVMTGHDAYCL-IAEEGEPSTFHEALNG 797

Query: 1106 SESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSV-RYKARL 1282
            S++ +W  A+ EEM++L KN TWELV+LP  +KAIG KWVY +K    G D V RY+ARL
Sbjct: 798  SDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRD--GNDQVERYRARL 855

Query: 1283 VAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYM 1462
            V KGYAQKEGID+NE+FSPVV+ ++IR++LA+ A  DL L QLDVKTAFLHG+L EEIYM
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 1463 TQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQ 1642
             QP+G+K  GKE+L C+L KSLYGLKQ+PR WYKRFD F+I   Y R S DHC YY+   
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFD 975

Query: 1643 NGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKV 1822
               FI LLLYVDD+L+       +++LK Q++ EF+MKDLG A KILGM+I RDR   K+
Sbjct: 976  GNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKI 1035

Query: 1823 CLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGS 2002
             LSQK YL+K+L+RF M    KP+STPL  +FKLS+ MSPS + ER  M+ V Y SAVGS
Sbjct: 1036 WLSQKNYLRKVLRRFNMQ-DCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGS 1094

Query: 2003 LMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQH 2182
            LMYAM+CTRPDI+QAV +VSR+M DPGK HW AVK I+RYI GT  + + F   +     
Sbjct: 1095 LMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELT--- 1151

Query: 2183 VVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEA 2362
            V GYVDSD+AGD DKR+STTGYVFTL  G VSW S LQ+ VALSTTEAEYMA T+A KEA
Sbjct: 1152 VRGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEA 1211

Query: 2363 IWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            IW+Q L++++G   E + V+CDSQSA+ + ++   HSRTKHI V+YHFV
Sbjct: 1212 IWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFV 1260


>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
            vulgaris]
          Length = 1947

 Score =  868 bits (2244), Expect = 0.0
 Identities = 440/790 (55%), Positives = 568/790 (71%), Gaps = 37/790 (4%)
 Frame = +2

Query: 251  YTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRHFTVS 430
            ++  HK E    F++WK ++E QTG+K+KRLR+DNG E+ +D F  +C+D GIVRH TV 
Sbjct: 595  WSQNHKGEAFKTFVQWKVLVENQTGKKVKRLRTDNGLEFVNDEFNELCRDAGIVRHRTVR 654

Query: 431  GTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGKTPIE 610
             TPQQNGVAERMN+T+LE+VRCMLSN+GL + +W EAV  AC+LINR P   ID K P E
Sbjct: 655  KTPQQNGVAERMNQTLLERVRCMLSNAGLTRKYWSEAVKTACYLINRGPHTGIDCKVPYE 714

Query: 611  VWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASKKLVL 790
            VWSG+ A +Y  L +FGC  Y+HV E KL+PRAKK  FLG+  GVKGYR+W P+  +++L
Sbjct: 715  VWSGRSA-EYSGLRVFGCMVYYHVNEGKLEPRAKKGCFLGYGDGVKGYRIWSPSEGRVIL 773

Query: 791  SRDVTFDESAMW-KQNKQNGSQEESK--------ANDKSKQV------------------ 889
            SRDVTFDE+ M+   NK  G  +ES         A D + QV                  
Sbjct: 774  SRDVTFDENTMFVSANKPAGDTDESTDEGSEQVVAPDPTPQVRTQGKDNEAPVSSPIVET 833

Query: 890  -EFDIIPIESKGD-DTDEEET--SAQEPPQEQADSIATTKPKRNIRKPQR---FTDMVAY 1048
             + D+  ++   D ++D EET    Q+ P+++   +      RN+  P R     +M+ Y
Sbjct: 834  SQRDVAVVDETADVESDHEETVVEGQKRPRKKTQRLIEQIEGRNV--PGRNCCVEEMIGY 891

Query: 1049 ALPMVEECV---PTTYKEAKRHSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCK 1219
            AL + E+     P +YKEA   +ES +W  AM EEM+SLHKN TWELV++P  +K +GCK
Sbjct: 892  ALHVAEDIESPEPMSYKEAVSSNESAKWLVAMSEEMESLHKNQTWELVRIPQGRKVVGCK 951

Query: 1220 WVYTMKEGSPGKDSVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLE 1399
            WV+  KEG+   +SVRYKARLVAKG++Q+EG+DYNE+FSPVV+H+SIR+LLA+VA FDLE
Sbjct: 952  WVFKRKEGTSEGESVRYKARLVAKGFSQREGVDYNEIFSPVVRHTSIRVLLAMVAHFDLE 1011

Query: 1400 LVQLDVKTAFLHGDLNEEIYMTQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKF 1579
            L QLDVKTAFLHG+L E+I M+QP+G+ V GKE  AC LKKSLYGLKQSPRQWYKRFD F
Sbjct: 1012 LEQLDVKTAFLHGELEEDILMSQPEGFVVPGKEKFACSLKKSLYGLKQSPRQWYKRFDSF 1071

Query: 1580 MIGQKYTRSSFDHCVYYRELQNGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKD 1759
            M+   + RS +D CVY+ ++++G++IYLLLYVDDMLIA+K+  ++ KLK  +S EF+MKD
Sbjct: 1072 MVEHGFDRSPYDCCVYHSKVEDGSYIYLLLYVDDMLIAAKKKSDVLKLKKLLSSEFDMKD 1131

Query: 1760 LGEAKKILGMEIQRDRVQGKVCLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMS 1939
            LG AKKILGMEI RD  + K+ LSQK Y+ K+L RFGM +  K + TP A++ +LS  +S
Sbjct: 1132 LGAAKKILGMEIYRDHGRKKLFLSQKSYILKVLDRFGM-STAKSIDTPAAANARLSVVLS 1190

Query: 1940 PSTDDERQYMAHVSYQSAVGSLMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILR 2119
            P +D+E++YM+ V Y SAVGSLMYAMVCTRPD++ AVS+VSR+M  PGK HWQAVK I R
Sbjct: 1191 PQSDEEKEYMSKVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMTQPGKEHWQAVKRIFR 1250

Query: 2120 YILGTVDIGLVFQRDDSIGQHVVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQS 2299
            Y+ GT D+GL++  D      V GY DSDYAGD+D RRS TGYV+TL    VSW++TLQS
Sbjct: 1251 YLRGTADVGLIYGNDTEC--LVTGYSDSDYAGDIDTRRSMTGYVYTLGGSVVSWKATLQS 1308

Query: 2300 TVALSTTEAEYMAVTEAIKEAIWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRT 2479
            +V LSTTEAEYMA+T A KE IWL+GL+ D+G+  +   V+CDS SAICL KDQVHH RT
Sbjct: 1309 SVTLSTTEAEYMALTAAAKEGIWLRGLVSDLGLHHDRAIVYCDSLSAICLAKDQVHHDRT 1368

Query: 2480 KHIDVRYHFV 2509
            KHIDVRYHF+
Sbjct: 1369 KHIDVRYHFL 1378


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  864 bits (2233), Expect = 0.0
 Identities = 451/829 (54%), Positives = 564/829 (68%), Gaps = 15/829 (1%)
 Frame = +2

Query: 68   FCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSRRVW 247
            FCE CVFGK  +VKF T++HRT+G LDYVH+D+WGP++  SLGG  Y +T +DD+SR+VW
Sbjct: 460  FCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVW 519

Query: 248  VYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRHFTV 427
             Y +KHKD+    F +WK MIE QT +++K LR+DN GE+ SD F   C+ EGIVRH T+
Sbjct: 520  PYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTI 579

Query: 428  SGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGKTPI 607
              TPQQNGVAERMNRTI+ K RCMLSN+ + K FW EA   AC+LINR PS  ++ KTPI
Sbjct: 580  PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPI 639

Query: 608  EVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASKKLV 787
            E+WSG PA DY +L +FGC AY HV   KL+PRA K +FLG+  GVKGY+LW P + K  
Sbjct: 640  EIWSGMPA-DYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTF 698

Query: 788  LSRDVTFDESAMWKQNK-----QNGSQEESKANDKSKQVE-FDIIPIESKGDDTDEEETS 949
            +SR V F+ES M+  +        GS EE +    S QVE  D    E  G+D +  +T 
Sbjct: 699  MSRSVVFNESVMFNDSLPTDVIPGGSDEEQQY--VSVQVEHVDDQETEIVGNDVN--DTV 754

Query: 950  AQEPP--QEQADSIATTKPKRNIRKPQRF---TDMVAYALPMVEE----CVPTTYKEAKR 1102
               PP  Q Q + IA  + KR+   P R     DMV YA    E+      P TY EA  
Sbjct: 755  QHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVV 814

Query: 1103 HSESVEWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSVRYKARL 1282
              +  +W +AM EEM+SL KN TWELV LP +KK + CKW++  KEG    +  R+KARL
Sbjct: 815  SGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARL 874

Query: 1283 VAKGYAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYM 1462
            VAKG++Q  G+DYN+VFSPVVKHSSIR   ++VA  DLEL QLDVKTAFLHG+L EEIYM
Sbjct: 875  VAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYM 934

Query: 1463 TQPDGYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQ 1642
             QP+G+ V GKE   CKLK+SLYGLKQSPRQWYKRFD FM+   + RS FD CVY +   
Sbjct: 935  DQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK-FV 993

Query: 1643 NGTFIYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKV 1822
            NG+ IYLLLYVDD+LIA+K   +I  LK Q+S EF+MKDLG AKKILGMEI RD+  G +
Sbjct: 994  NGSPIYLLLYVDDILIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDKNSGLL 1053

Query: 1823 CLSQKQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGS 2002
             LSQ+ Y+KK+LQ F M    KPVSTP+A HFKLSA    +TD++ +YM+ V Y SAVGS
Sbjct: 1054 FLSQQSYIKKVLQCFNMH-DAKPVSTPIAPHFKLSALQCANTDEDVEYMSRVPYSSAVGS 1112

Query: 2003 LMYAMVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQH 2182
            LMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+ GT D  L F R D   + 
Sbjct: 1113 LMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAVQWIFRYLRGTADACLKFGRTD---KG 1169

Query: 2183 VVGYVDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEA 2362
            ++GYVDSD+A DLDKRRS T                            EYMA+ E  KE+
Sbjct: 1170 LIGYVDSDFAADLDKRRSLT----------------------------EYMAIAETCKES 1201

Query: 2363 IWLQGLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
            +WL+GL  ++      +++ CDSQSAICLTKDQ+ H RTKHID++YH+V
Sbjct: 1202 VWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYV 1250


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  862 bits (2227), Expect = 0.0
 Identities = 451/818 (55%), Positives = 561/818 (68%), Gaps = 1/818 (0%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            KL FCEHC+FGK  +VKF T+ H T+G LDYVHSD+WGP +  S GG  Y +T V+D+SR
Sbjct: 281  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSR 340

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHK +  NVF +WK M+E QT RK+K LR+DNG E+ S  F   C+ EGI+RH
Sbjct: 341  KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRH 400

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
            +TV  TPQQNGVAERMNRTI+ K RCMLSN+GL K FW EAV+ AC+LINR P  AID K
Sbjct: 401  YTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKK 460

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPI+VWSG PA +Y  L +FGC AY HV   KL+PR  K IFLG+ SGVKGY+LWCP +K
Sbjct: 461  TPIKVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETK 519

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSAQE 958
            K+V+SR V F ES M           ES+   +   V+  I+ + S   +   ++ S +E
Sbjct: 520  KVVISRYVVFHESVMLHDKPSTNIPVESQ---EKASVQIQILLLFSSLQNVLLQKISPKE 576

Query: 959  PPQEQADSIATTKPKRNIRKPQRFTDMVAYALPMVEECVPTTYKEAKRHSESVEWQNAMD 1138
                            N+ K     ++VAYAL + EE                       
Sbjct: 577  --------------ILNLLKDIEEANIVAYALSVAEE----------------------- 599

Query: 1139 EEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSVRYKARLVAKGYAQKEGID 1318
                 L KN TWELV+LP E K I CKW++  KEG    D  RYKARLVAKGY+Q  GID
Sbjct: 600  -----LEKNHTWELVKLPKENKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 654

Query: 1319 YNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYMTQPDGYKVAGKE 1498
            +N++FSPVVKHSSIR LL++VA  D EL Q+DVKTAFLHG+L E+IYM QP+G+ V GKE
Sbjct: 655  FNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 714

Query: 1499 HLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQNGTFIYLLLYVD 1678
            +L C+LKKSLYGLKQSPRQWYKRFD FM+ QK+ RS++D CVY + + +G+ IYLLLYVD
Sbjct: 715  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVD 773

Query: 1679 DMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKVCLSQKQYLKKIL 1858
            DMLIA+K   EI KLK Q+S EFEMKDLG AKKILGMEI R+R   K+ LSQK Y++K+L
Sbjct: 774  DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVL 833

Query: 1859 QRFGM-DAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGSLMYAMVCTRPD 2035
            +RF M DAK      P+  H ++                +V Y SAVGSLMYAM+C+RPD
Sbjct: 834  RRFNMHDAK------PIYVHSQI----------------YVPYSSAVGSLMYAMICSRPD 871

Query: 2036 ISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQHVVGYVDSDYAG 2215
            +S A+S+VSRYM +PGK HW+AV+WI RY+ GT    L F R       +VGYVDSD+AG
Sbjct: 872  LSHALSVVSRYMVNPGKEHWKAVQWIFRYLHGTSSACLQFGRS---RDGLVGYVDSDFAG 928

Query: 2216 DLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDMG 2395
            DLD+RRS TGYVFT+    VSW+++LQ+TVALSTTEAEY+A++EA KEAIWL+ L  ++ 
Sbjct: 929  DLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYIAISEACKEAIWLRDLYTELC 988

Query: 2396 IF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
                 +++ CDSQSAICLTKDQ+ H RTKHIDVRYHF+
Sbjct: 989  GVTSCINIVCDSQSAICLTKDQMFHERTKHIDVRYHFI 1026


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  862 bits (2227), Expect = 0.0
 Identities = 451/818 (55%), Positives = 561/818 (68%), Gaps = 1/818 (0%)
 Frame = +2

Query: 59   KLGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSR 238
            KL FCEHC+FGK  +VKF T+ H T+G LDYVHSD+WGP +  S GG  Y +T V+D+SR
Sbjct: 449  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSR 508

Query: 239  RVWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRH 418
            +VW Y +KHK +  NVF +WK M+E QT RK+K LR+DNG E+ S  F   C+ EGI+RH
Sbjct: 509  KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRH 568

Query: 419  FTVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGK 598
            +TV  TPQQNGVAERMNRTI+ K RCMLSN+GL K FW EAV+ AC+LINR P  AID K
Sbjct: 569  YTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKK 628

Query: 599  TPIEVWSGKPATDYDKLHIFGCPAYFHVTENKLDPRAKKAIFLGFSSGVKGYRLWCPASK 778
            TPI+VWSG PA +Y  L +FGC AY HV   KL+PR  K IFLG+ SGVKGY+LWCP +K
Sbjct: 629  TPIKVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETK 687

Query: 779  KLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSAQE 958
            K+V+SR V F ES M           ES+   +   V+  I+ + S   +   ++ S +E
Sbjct: 688  KVVISRYVVFHESVMLHDKPSTNIPVESQ---EKASVQIQILLLFSSLQNVLLQKISPKE 744

Query: 959  PPQEQADSIATTKPKRNIRKPQRFTDMVAYALPMVEECVPTTYKEAKRHSESVEWQNAMD 1138
                            N+ K     ++VAYAL + EE                       
Sbjct: 745  --------------ILNLLKDIEEANIVAYALSVAEE----------------------- 767

Query: 1139 EEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSVRYKARLVAKGYAQKEGID 1318
                 L KN TWELV+LP E K I CKW++  KEG    D  RYKARLVAKGY+Q  GID
Sbjct: 768  -----LEKNHTWELVKLPKENKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGID 822

Query: 1319 YNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYMTQPDGYKVAGKE 1498
            +N++FSPVVKHSSIR LL++VA  D EL Q+DVKTAFLHG+L E+IYM QP+G+ V GKE
Sbjct: 823  FNDIFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 882

Query: 1499 HLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQNGTFIYLLLYVD 1678
            +L C+LKKSLYGLKQSPRQWYKRFD FM+ QK+ RS++D CVY + + +G+ IYLLLYVD
Sbjct: 883  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK-VVDGSAIYLLLYVD 941

Query: 1679 DMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKVCLSQKQYLKKIL 1858
            DMLIA+K   EI KLK Q+S EFEMKDLG AKKILGMEI R+R   K+ LSQK Y++K+L
Sbjct: 942  DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSDKLYLSQKGYIEKVL 1001

Query: 1859 QRFGM-DAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGSLMYAMVCTRPD 2035
            +RF M DAK      P+  H ++                +V Y SAVGSLMYAM+C+RPD
Sbjct: 1002 RRFNMHDAK------PIYVHSQI----------------YVPYSSAVGSLMYAMICSRPD 1039

Query: 2036 ISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQHVVGYVDSDYAG 2215
            +S A+S+VSRYM +PGK HW+AV+WI RY+ GT    L F R       +VGYVDSD+AG
Sbjct: 1040 LSHALSVVSRYMVNPGKEHWKAVQWIFRYLHGTSSACLQFGRS---RDGLVGYVDSDFAG 1096

Query: 2216 DLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDMG 2395
            DLD+RRS TGYVFT+    VSW+++LQ+TVALSTTEAEY+A++EA KEAIWL+ L  ++ 
Sbjct: 1097 DLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYIAISEACKEAIWLRDLYTELC 1156

Query: 2396 IF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
                 +++ CDSQSAICLTKDQ+ H RTKHIDVRYHF+
Sbjct: 1157 GVTSCINIVCDSQSAICLTKDQMFHERTKHIDVRYHFI 1194


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  860 bits (2222), Expect = 0.0
 Identities = 442/825 (53%), Positives = 576/825 (69%), Gaps = 9/825 (1%)
 Frame = +2

Query: 62   LGFCEHCVFGKQTKVKFGTAIHRTQGTLDYVHSDVWGPTKVASLGGMHYFVTFVDDFSRR 241
            L FCEHCV  KQ ++KF  +  R++  LD +HSDVW   +V S+GG  YFV+F+DD+SRR
Sbjct: 455  LPFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVWESPEV-SIGGAKYFVSFIDDYSRR 513

Query: 242  VWVYTMKHKDEVLNVFLKWKKMIETQTGRKIKRLRSDNGGEYKSDTFL*VCQDEGIVRHF 421
            +WVY +K K  V +VF ++K  +E +TG++IK LR+DNGGEY    FL  C+ EGI R F
Sbjct: 514  LWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQF 573

Query: 422  TVSGTPQQNGVAERMNRTILEKVRCMLSNSGLGKAFWGEAVAYACHLINRLPSAAIDGKT 601
            TV+ TPQQNGVAERMNRT+LE+ R ML  +GL K+FW EA   AC++INR PS AI  KT
Sbjct: 574  TVAHTPQQNGVAERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKT 633

Query: 602  PIEVWSGKPATDYDKLHIFGCPAYFHVTEN---KLDPRAKKAIFLGFSSGVKGYRLWCPA 772
            P+E+W GKP  DY  L +FGCP Y         KLDP++++  FLG++  VKGYRLW P 
Sbjct: 634  PMEMWKGKPG-DYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPT 692

Query: 773  SKKLVLSRDVTFDESAMWKQNKQNGSQEESKANDKSKQVEFDIIPIESKGDDTDEEETSA 952
            ++K+ +SRDV F E+ + K+ K +G+ +E+        VE +    E  G++  E E   
Sbjct: 693  ARKIFVSRDVIFVENELQKEQKNDGTTKETAT------VEIE----EKSGEENSEAEPEH 742

Query: 953  QEPPQEQADSIATTKPKRNIRKPQRFTDMV-----AYALPMVEECVPTTYKEAKRHSESV 1117
            +E    + +     +  R IRKP   ++ V     AY L + E+  P+T+ EA   S++ 
Sbjct: 743  EEQEPNEVNDAEPRRTTRQIRKPSWHSEYVMASHDAYCL-LSEDGEPSTFHEAVNGSDAS 801

Query: 1118 EWQNAMDEEMKSLHKNDTWELVQLPTEKKAIGCKWVYTMKEGSPGKDSV-RYKARLVAKG 1294
             W  AM EE+++LH+N+TWELV+LP  +KAIG KWV+ +K    G D V RY+ARLV KG
Sbjct: 802  LWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRD--GNDQVERYRARLVVKG 859

Query: 1295 YAQKEGIDYNEVFSPVVKHSSIRILLALVAQFDLELVQLDVKTAFLHGDLNEEIYMTQPD 1474
            YAQKEGID+NE+FSPVV+ ++IRI+LA+ A F+L L QLDVKTAFLHG+L EEIYM QP+
Sbjct: 860  YAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPE 919

Query: 1475 GYKVAGKEHLACKLKKSLYGLKQSPRQWYKRFDKFMIGQKYTRSSFDHCVYYRELQNGTF 1654
            G++   +E+L C+L KSLYGLKQ+PR WYKRFD F++   Y R S DHC YY+   +G F
Sbjct: 920  GFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDF 979

Query: 1655 IYLLLYVDDMLIASKRMVEIEKLKTQMSIEFEMKDLGEAKKILGMEIQRDRVQGKVCLSQ 1834
            I LLLYVDDML+       +++LK Q++ EF+MKDLG A KILGM+I RDR   K+ LSQ
Sbjct: 980  IILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQ 1039

Query: 1835 KQYLKKILQRFGMDAKTKPVSTPLASHFKLSATMSPSTDDERQYMAHVSYQSAVGSLMYA 2014
            K YL+K+L+RF M     P+STPL  ++KLS++M PS++ ER  M+ V Y SAVGSLMYA
Sbjct: 1040 KNYLQKVLRRFNMQ-DYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYA 1098

Query: 2015 MVCTRPDISQAVSIVSRYMHDPGKGHWQAVKWILRYILGTVDIGLVFQRDDSIGQHVVGY 2194
            M+CTRPDI+QAV  VSR+M DPGK HW AVK ILRYI GT    L F   +     + GY
Sbjct: 1099 MICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEFT---IRGY 1155

Query: 2195 VDSDYAGDLDKRRSTTGYVFTLARGPVSWRSTLQSTVALSTTEAEYMAVTEAIKEAIWLQ 2374
            VDSD+AGDLDKR+STTGYVFTLA G VSW S LQ+ VALSTTEAEYMA T+A KEAIW Q
Sbjct: 1156 VDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQ 1215

Query: 2375 GLLDDMGIF*EHMDVHCDSQSAICLTKDQVHHSRTKHIDVRYHFV 2509
             LL+++G   + + V+CDS SA+ + ++   HSRTKHI V+YHFV
Sbjct: 1216 RLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFV 1260