BLASTX nr result
ID: Cinnamomum23_contig00014980
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00014980
(1638 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010252356.1| PREDICTED: probable mediator of RNA polymera... 407 e-110
ref|XP_002265433.2| PREDICTED: probable mediator of RNA polymera... 370 2e-99
ref|XP_010649433.1| PREDICTED: probable mediator of RNA polymera... 349 4e-93
gb|KDO53372.1| hypothetical protein CISIN_1g018587mg [Citrus sin... 343 2e-91
ref|XP_002530078.1| conserved hypothetical protein [Ricinus comm... 343 2e-91
ref|XP_006427873.1| hypothetical protein CICLE_v10025964mg [Citr... 343 2e-91
ref|XP_002279496.2| PREDICTED: probable mediator of RNA polymera... 343 3e-91
ref|XP_012075304.1| PREDICTED: probable mediator of RNA polymera... 338 7e-90
ref|XP_012075305.1| PREDICTED: probable mediator of RNA polymera... 337 1e-89
ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymera... 337 1e-89
ref|XP_008440997.1| PREDICTED: probable mediator of RNA polymera... 337 2e-89
ref|XP_007048434.1| Transcription elongation factor (TFIIS) fami... 336 3e-89
ref|XP_012458765.1| PREDICTED: probable mediator of RNA polymera... 333 3e-88
ref|XP_002279514.1| PREDICTED: probable mediator of RNA polymera... 332 5e-88
ref|XP_012451443.1| PREDICTED: probable mediator of RNA polymera... 330 2e-87
ref|XP_011625935.1| PREDICTED: probable mediator of RNA polymera... 330 3e-87
ref|XP_012458764.1| PREDICTED: probable mediator of RNA polymera... 329 4e-87
gb|KHG16250.1| Transcription elongation factor A N-terminal and ... 327 2e-86
ref|XP_009404348.1| PREDICTED: probable mediator of RNA polymera... 326 4e-86
ref|XP_007011109.1| Transcription elongation factor (TFIIS) fami... 325 6e-86
>ref|XP_010252356.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Nelumbo nucifera]
Length = 349
Score = 407 bits (1047), Expect = e-110
Identities = 218/352 (61%), Positives = 262/352 (74%), Gaps = 5/352 (1%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
M+ DDFRS+L+++GVDVW FIDTAISVA DY ELKDRRDGI+ RLY V C+NC+L
Sbjct: 1 MNFDDFRSILRNSGVDVWTFIDTAISVASLDYKNELKDRRDGIIERLYVPFVSGCQNCNL 60
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSIDSE 752
++ R N + +K + ASI KE SS +G SPSTP+S NR+ED DR+ D E
Sbjct: 61 DSTRQNCHETKKKVHQTRTEASIIKESSSIEGKRGSPSTPQS-NRDEDHDRSYGHPFDDE 119
Query: 751 QSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEVRK 572
Q++ILAIKEHLE PDQSEDSLVNLLQ L+DMD+TFK LKETDIGRHVN LRKH S EVR+
Sbjct: 120 QTKILAIKEHLEDPDQSEDSLVNLLQDLADMDLTFKTLKETDIGRHVNRLRKHSSNEVRR 179
Query: 571 LVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNG-NQVLDFGYSPN 395
LVKQLVRKWK+LVDEWVK NT G+TAAST+IADGDSP+Q P+K N +QV D YSPN
Sbjct: 180 LVKQLVRKWKELVDEWVKSNTPGETAASTLIADGDSPQQNPSKGAQNSHHQVPDVAYSPN 239
Query: 394 HHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPISCTTA--NKQKESKE--IDLDKL 227
H+ SS + K RR+ Q + +QS + T+ NKQ+E K+ ID ++L
Sbjct: 240 PHNGSSSSDKNNSESERKEK-IIPRREPQMRPTQSVPASTSVPPNKQREQKDSSIDPERL 298
Query: 226 ASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGVQARQW 71
ASAR+RLHENYQEAQNAKKQRTIQ +D+HD+PKP KNSFFA+NKGG QAR W
Sbjct: 299 ASARRRLHENYQEAQNAKKQRTIQVMDIHDIPKP-KNSFFAKNKGGFQARHW 349
>ref|XP_002265433.2| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Vitis vinifera]
gi|731430702|ref|XP_010665135.1| PREDICTED: probable
mediator of RNA polymerase II transcription subunit 26c
[Vitis vinifera] gi|296081186|emb|CBI18212.3| unnamed
protein product [Vitis vinifera]
Length = 332
Score = 370 bits (950), Expect = 2e-99
Identities = 209/356 (58%), Positives = 252/356 (70%), Gaps = 9/356 (2%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCD- 935
MD D+FRS+L+ +GVDVW I+TA+SVA DY EE K RRD IV RLY V RC NCD
Sbjct: 1 MDCDEFRSILESSGVDVWTLIETAVSVASVDYSEEFKGRRDSIVERLYTPVVSRCLNCDR 60
Query: 934 --LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSI 761
+ P + + KEK + L+ + IE TPES+ R+ D SI
Sbjct: 61 DRIHKPNGDRSVKEK-MDQLQDESWIE--------------TPESVERDRDG------SI 99
Query: 760 DSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTE 581
D EQS+ILAIKE LE PDQ EDSLV+LLQ+L+DMDITFKALKETDIGRHVN LRKHPS E
Sbjct: 100 DEEQSKILAIKERLEDPDQLEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHPSNE 159
Query: 580 VRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHN-GNQVLDFGY 404
VR+LVKQLVRKWKDLVDEWVKL+T G+T AS I+ADGDSP+Q KS N +QV DF Y
Sbjct: 160 VRRLVKQLVRKWKDLVDEWVKLSTPGETTASAIVADGDSPQQNHLKSTSNVHHQVPDFAY 219
Query: 403 SPNHHHTDESSGFSKQTPVVDGK-GAASRRDVQTKKSQSPISCTTA--NKQKESKE--ID 239
SPN H + SSG K ++ K A RR+ K +Q+P T+ NKQ+E K+ +D
Sbjct: 220 SPNPH--NGSSGSDKNNVELEPKRKAVPRRETPNKPNQTPPIPTSVALNKQREQKDSLVD 277
Query: 238 LDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGVQARQW 71
+KLASAR+RLHENYQEAQNAKKQRTIQ +D+HD+PKP KN+FFA+N+GGVQA+ W
Sbjct: 278 EEKLASARRRLHENYQEAQNAKKQRTIQVMDIHDIPKP-KNTFFAKNRGGVQAKHW 332
>ref|XP_010649433.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X1 [Vitis vinifera]
gi|296088637|emb|CBI37628.3| unnamed protein product
[Vitis vinifera]
Length = 332
Score = 349 bits (895), Expect = 4e-93
Identities = 195/348 (56%), Positives = 247/348 (70%), Gaps = 3/348 (0%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
MD D+FR +L+++GVDVW+FI+TAISVA +DYG+EL+ RRDGIV R+Y ++ RC +C+L
Sbjct: 1 MDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMYMSS--RCGSCNL 58
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSIDSE 752
S L+ EKE D SP TP+SINR +DR L +D E
Sbjct: 59 RYQHSG----------LDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGGL-LDEE 107
Query: 751 QSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEVRK 572
++RIL IKEHLE PDQ +DS+V+LLQTL+DMDITFKALKETDIGRHVN LRKHPS +VR+
Sbjct: 108 EARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRR 167
Query: 571 LVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLDFGYSPNH 392
LVK LVRKWKDLVDEWVK N +G+ +S ++A+GDSP Q ++ H +QV DFGYSPN
Sbjct: 168 LVKHLVRKWKDLVDEWVKSNPAGEFTSSALMAEGDSPPQKIPRTGH--HQVPDFGYSPNP 225
Query: 391 HHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQS-PISCT--TANKQKESKEIDLDKLAS 221
+ S + P K A R++V T+ +QS P+S + NKQ+++ ID DK AS
Sbjct: 226 QNGSSGSDKNNAEPEPKVK-AIPRKEVPTRPAQSAPVSSSFPPPNKQRDT-AIDPDKFAS 283
Query: 220 ARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGVQAR 77
ARKRLHENYQEAQNAKKQRTIQ +D+HD+PKP KN+FFA+ K G Q R
Sbjct: 284 ARKRLHENYQEAQNAKKQRTIQVMDIHDIPKP-KNTFFAKPKVGSQGR 330
>gb|KDO53372.1| hypothetical protein CISIN_1g018587mg [Citrus sinensis]
Length = 353
Score = 343 bits (881), Expect = 2e-91
Identities = 207/375 (55%), Positives = 244/375 (65%), Gaps = 28/375 (7%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVP-RCRNCD 935
MDLDDFRS+LK GVDVW FIDTAI VA DY ELK+RRD IV RLYAT + RCRNCD
Sbjct: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMS--SHDGIGA----SPSTPESINREEDQDRTN 773
NG + KE+S HD + A SPSTP S+N ++D D N
Sbjct: 61 F----GNGV------------VDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIEN 104
Query: 772 DLSI--------DSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGR 617
D I D EQ RIL IKEHLE PDQSED+L++LLQ+L+DMDITFKALKETDIGR
Sbjct: 105 DNDIIDPYGGLFDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGR 164
Query: 616 HVNSLRKHPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSI 437
HVN LRKH S +VRKLVK LVRKWKD+VDEWVKLN G+ A+S ++ DGDSP+Q K
Sbjct: 165 HVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQ---KIP 220
Query: 436 HNGN-QVLDFGYSPNHH--------HTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPI 284
NGN QV DF YSPN H + E SKQ P + K A S R Q+ +P
Sbjct: 221 QNGNHQVPDFAYSPNPHNGSSGSDKNNSEPERKSKQAP-LPRKEALSSRPPQSASPAAPH 279
Query: 283 SCTTANKQKESKEIDLD---KLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNS 113
S +QKES+E D +LASARKRL ENY+ +NAK+QRTIQ +D+H++PKP KN+
Sbjct: 280 SVQRPREQKESRESTFDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKP-KNA 338
Query: 112 FFARNKGG-VQARQW 71
FF +NKGG Q R W
Sbjct: 339 FFGKNKGGSSQGRHW 353
>ref|XP_002530078.1| conserved hypothetical protein [Ricinus communis]
gi|223530431|gb|EEF32318.1| conserved hypothetical
protein [Ricinus communis]
Length = 362
Score = 343 bits (880), Expect = 2e-91
Identities = 194/372 (52%), Positives = 247/372 (66%), Gaps = 25/372 (6%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
MD+DDFRS+L+ +GVDVW FIDTAI VA D+G ELK RRD IV LY+++ RCRNCDL
Sbjct: 1 MDVDDFRSILESSGVDVWTFIDTAIVVASLDFGNELKQRRDKIVEMLYSSS-GRCRNCDL 59
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLS---- 764
+ R N N ++ + +E + G G+ +TP SI+ +ED D ND
Sbjct: 60 DVGRIN------NGHEIKERSHLESKGGGGGGSGSPSTTPRSIHGDEDVDVVNDDDDDDD 113
Query: 763 -----------IDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGR 617
D EQ +IL IK+HLE PDQSEDSLV+LLQ+L+DMDITFKALKETDIGR
Sbjct: 114 DDDGLDPYAGLFDDEQKKILEIKQHLEDPDQSEDSLVDLLQSLADMDITFKALKETDIGR 173
Query: 616 HVNSLRKHPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSI 437
HVN LRKH S +VR+LVKQLVRKWKD+VDEWVKLN GQ A+S ++ADGDSPRQ ++
Sbjct: 174 HVNQLRKHTSNDVRRLVKQLVRKWKDIVDEWVKLNPPGQHASSGLMADGDSPRQKFPQNG 233
Query: 436 HNGNQVLDFGYSPNHHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQS--PISCTTAN- 266
H +QV DF YSPN H+ S + P K R++ + +Q P+S + ++
Sbjct: 234 H--HQVPDFAYSPNPHNGSSGSDKNNSEPERRPK-PVPRKEAPPRPAQQSVPVSASASHI 290
Query: 265 -----KQKESKEIDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKP-SKNSFFA 104
+Q+ D D+LASARKRL NY+EA+NAKKQRTIQ +D+H+LPKP +KN+FFA
Sbjct: 291 VQRQREQQRENNFDSDRLASARKRLQANYKEAENAKKQRTIQVMDIHELPKPKNKNTFFA 350
Query: 103 RNK-GGVQARQW 71
+NK GG Q R W
Sbjct: 351 KNKGGGSQGRHW 362
>ref|XP_006427873.1| hypothetical protein CICLE_v10025964mg [Citrus clementina]
gi|568820070|ref|XP_006464554.1| PREDICTED: probable
mediator of RNA polymerase II transcription subunit
26c-like [Citrus sinensis] gi|557529863|gb|ESR41113.1|
hypothetical protein CICLE_v10025964mg [Citrus
clementina]
Length = 353
Score = 343 bits (880), Expect = 2e-91
Identities = 207/375 (55%), Positives = 244/375 (65%), Gaps = 28/375 (7%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVP-RCRNCD 935
MDL+DFRS+LK GVDVW FIDTAI VA DY ELK+RRD IV RLYAT + RCRNCD
Sbjct: 1 MDLEDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMS--SHDGIGA----SPSTPESINREEDQDRTN 773
NG + KE+S HD + A SPSTP S+N ++D D N
Sbjct: 61 F----GNGV------------VDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIEN 104
Query: 772 DLSI--------DSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGR 617
D I D EQ RIL IKEHLE PDQSEDSL++LLQ+L+DMDITFKALKETDIGR
Sbjct: 105 DNDIIDPYGGLFDDEQKRILEIKEHLEDPDQSEDSLIDLLQSLADMDITFKALKETDIGR 164
Query: 616 HVNSLRKHPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSI 437
HVN LRKH S +VRKLVK LVRKWKD+VDEWVKLN G+ A+S ++ DGDSP+Q K
Sbjct: 165 HVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQ---KIP 220
Query: 436 HNGN-QVLDFGYSPNHH--------HTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPI 284
NGN QV DF YSPN H + E SKQ P + K A S R Q+ +P
Sbjct: 221 QNGNHQVPDFAYSPNPHNGSSGSDKNNSEPERKSKQAP-LPRKEALSSRPPQSASPAAPH 279
Query: 283 SCTTANKQKESKEIDLD---KLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNS 113
S +QKES+E D +LASARKRL ENY+ +NAK+QRTIQ +D+H++PKP KN+
Sbjct: 280 SVQRPREQKESRESTFDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKP-KNA 338
Query: 112 FFARNKGG-VQARQW 71
FF +NKGG Q R W
Sbjct: 339 FFGKNKGGSSQGRHW 353
>ref|XP_002279496.2| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Vitis vinifera]
Length = 331
Score = 343 bits (879), Expect = 3e-91
Identities = 194/348 (55%), Positives = 246/348 (70%), Gaps = 3/348 (0%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
MD D+FR +L+++GVDVW+FI+TAISVA +DYG+EL+ RRDGIV R+Y ++ RC +C+L
Sbjct: 1 MDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMYMSS--RCGSCNL 58
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSIDSE 752
S L+ EKE D SP TP+SINR +DR L +D E
Sbjct: 59 RYQHSG----------LDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGGL-LDEE 107
Query: 751 QSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEVRK 572
++RIL IKEHLE PDQ +DS+V+LLQTL+DMDITFKALKETDIGRHVN LRKHPS +VR+
Sbjct: 108 EARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRR 167
Query: 571 LVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLDFGYSPNH 392
LVK LVRKWKDLVDEWVK N +G+ +S ++ +GDSP Q ++ H +QV DFGYSPN
Sbjct: 168 LVKHLVRKWKDLVDEWVKSNPAGEFTSSALM-EGDSPPQKIPRTGH--HQVPDFGYSPNP 224
Query: 391 HHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQS-PISCT--TANKQKESKEIDLDKLAS 221
+ S + P K A R++V T+ +QS P+S + NKQ+++ ID DK AS
Sbjct: 225 QNGSSGSDKNNAEPEPKVK-AIPRKEVPTRPAQSAPVSSSFPPPNKQRDT-AIDPDKFAS 282
Query: 220 ARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGVQAR 77
ARKRLHENYQEAQNAKKQRTIQ +D+HD+PKP KN+FFA+ K G Q R
Sbjct: 283 ARKRLHENYQEAQNAKKQRTIQVMDIHDIPKP-KNTFFAKPKVGSQGR 329
>ref|XP_012075304.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X1 [Jatropha curcas]
gi|643726633|gb|KDP35313.1| hypothetical protein
JCGZ_09472 [Jatropha curcas]
Length = 349
Score = 338 bits (867), Expect = 7e-90
Identities = 181/359 (50%), Positives = 247/359 (68%), Gaps = 12/359 (3%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
MD+DDFRS+L+ +GVDVW FI+TAI VA +D+G ELK RRD IV LY+++ RCRNCD
Sbjct: 1 MDIDDFRSILESSGVDVWTFIETAIMVASSDFGSELKRRRDKIVEMLYSSSDGRCRNCDF 60
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSID-- 758
+ R N + K +S E ++ G G+ +TP SI+ EE+++ D +D
Sbjct: 61 DVGRINDGHEMKE-------SSHEAKVGGGGGSGSPSTTPRSIHGEEEEEEEEDDELDPY 113
Query: 757 -----SEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKH 593
EQ +IL IK+ +E PDQSEDSL++LLQ+L+DMDITF+ALKETDIGRHVN LRKH
Sbjct: 114 GGLLDDEQKKILEIKQSIEDPDQSEDSLIDLLQSLADMDITFRALKETDIGRHVNRLRKH 173
Query: 592 PSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLD 413
S +VRKLVKQLVRKWK++VDEWV+LN G+ A+S ++ADGDSP+Q ++ H +QV D
Sbjct: 174 SSNDVRKLVKQLVRKWKEIVDEWVRLNPQGEHASSALMADGDSPQQKIPQNGH--HQVPD 231
Query: 412 FGYSPNHHH----TDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPISCTTANKQKESKE 245
F YSPN H+ +D+++ ++ P + A R +Q S S + ++++
Sbjct: 232 FAYSPNPHNGSSGSDKNNSEPERKPKPVPRKEAPPRPIQQSASASHNAQLQRQREQQQSN 291
Query: 244 IDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGV-QARQW 71
D ++LASARKRL ENY+EA NAKKQRTIQ +D+H++PKP KN+FF++NKGG Q R W
Sbjct: 292 FDSERLASARKRLQENYKEALNAKKQRTIQVMDIHEIPKP-KNTFFSKNKGGASQGRHW 349
>ref|XP_012075305.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Jatropha curcas]
Length = 347
Score = 337 bits (865), Expect = 1e-89
Identities = 182/357 (50%), Positives = 242/357 (67%), Gaps = 10/357 (2%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
MD+DDFRS+L+ +GVDVW FI+TAI VA +D+G ELK RRD IV LY+++ RCRNCD
Sbjct: 1 MDIDDFRSILESSGVDVWTFIETAIMVASSDFGSELKRRRDKIVEMLYSSSDGRCRNCDF 60
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSID-- 758
+ R N + K +S E ++ G G+ +TP SI+ EE+++ D +D
Sbjct: 61 DVGRINDGHEMKE-------SSHEAKVGGGGGSGSPSTTPRSIHGEEEEEEEEDDELDPY 113
Query: 757 -----SEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKH 593
EQ +IL IK+ +E PDQSEDSL++LLQ+L+DMDITF+ALKETDIGRHVN LRKH
Sbjct: 114 GGLLDDEQKKILEIKQSIEDPDQSEDSLIDLLQSLADMDITFRALKETDIGRHVNRLRKH 173
Query: 592 PSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLD 413
S +VRKLVKQLVRKWK++VDEWV+LN G+ A+S ++ADGDSP+Q ++ H +QV D
Sbjct: 174 SSNDVRKLVKQLVRKWKEIVDEWVRLNPQGEHASSALMADGDSPQQKIPQNGH--HQVPD 231
Query: 412 FGYSPNHHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPISCTTANKQKESKE--ID 239
F YSPN H+ S + P K + QS + A +Q+E ++ D
Sbjct: 232 FAYSPNPHNGSSGSDKNNSEPERKPKPVPRKEAPPRPIQQSASASHNAQRQREQQQSNFD 291
Query: 238 LDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGV-QARQW 71
++LASARKRL ENY+EA NAKKQRTIQ +D+H++PKP KN+FF++NKGG Q R W
Sbjct: 292 SERLASARKRLQENYKEALNAKKQRTIQVMDIHEIPKP-KNTFFSKNKGGASQGRHW 347
>ref|XP_004141981.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Cucumis sativus] gi|700193190|gb|KGN48394.1|
hypothetical protein Csa_6G486670 [Cucumis sativus]
Length = 345
Score = 337 bits (865), Expect = 1e-89
Identities = 193/363 (53%), Positives = 242/363 (66%), Gaps = 15/363 (4%)
Frame = -3
Query: 1114 RMDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVP--RCRN 941
R+DLDDFR++L GVDVW FIDTA+ VA DYG +LK+RRDGIV RLYA T P RCRN
Sbjct: 3 RLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRN 62
Query: 940 CDLEAP---RSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTND 770
CD + RSNG + ++ + KE ASPSTP+ + E D D +
Sbjct: 63 CDTDRNHDGRSNGCE-------IKQGSGEVKE--------ASPSTPQFVVVEGDDDGADP 107
Query: 769 LS--IDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRK 596
+ D EQ ++L IKE LE+P Q ED+LV LLQ L+DMDITF+ALKETDIGRHVN LRK
Sbjct: 108 YAGLFDDEQKKVLEIKEQLEIPQQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRK 167
Query: 595 HPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNG-NQV 419
HPS +VR+LVK LVRKWK++VDEWV+LN G+ A T++ADGDSP+Q K+ NG +QV
Sbjct: 168 HPSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA-TLLADGDSPQQ---KAPQNGYHQV 223
Query: 418 LDFGYSPNHHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPI-SCTTANKQKESKE- 245
DF YSPN H+ S + P GK R + Q+P S T N+QKE ++
Sbjct: 224 PDFAYSPNPHNGGSGSDRNNSEPEPKGKSVPRRDALPKPTQQAPTSSLTPQNRQKEQQKE 283
Query: 244 --IDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK---GGVQA 80
D KLASARKRL ENY+EA+NAK+QRTIQ +D+H++PKP KN+FF++NK GG Q
Sbjct: 284 ANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKP-KNAFFSKNKGSGGGSQG 342
Query: 79 RQW 71
R W
Sbjct: 343 RHW 345
>ref|XP_008440997.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Cucumis melo]
Length = 345
Score = 337 bits (864), Expect = 2e-89
Identities = 195/364 (53%), Positives = 242/364 (66%), Gaps = 16/364 (4%)
Frame = -3
Query: 1114 RMDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVP--RCRN 941
R+DLDDFR++L GVDVW FIDTA+ VA DYG +LK+RRDGIV RLYA T P RCRN
Sbjct: 3 RLDLDDFRTILDTAGVDVWTFIDTAMEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRN 62
Query: 940 CDLEAP---RSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTND 770
CD + RSNG E + S + GASPSTP+ + E D D +
Sbjct: 63 CDTDRNHDGRSNGC---------------EIKQGSGEVKGASPSTPQFVVVEGDDDGADP 107
Query: 769 LS--IDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRK 596
+ D EQ ++L IKE LE+P Q ED+LV LLQ L+DMDITF+ALKETDIGRHVN LRK
Sbjct: 108 YAGLFDDEQKKVLEIKEQLEIPHQPEDALVELLQNLADMDITFQALKETDIGRHVNRLRK 167
Query: 595 HPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNG-NQV 419
H S +VR+LVK LVRKWK++VDEWV+LN G+ A T++ADGDSP+Q K+ NG +QV
Sbjct: 168 HSSNDVRRLVKHLVRKWKEIVDEWVRLNQPGEQTA-TLLADGDSPQQ---KAPQNGYHQV 223
Query: 418 LDFGYSPNHHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQS--PISCTTANKQKESKE 245
DF YSPN H+ S + P GK + RRD K +Q S T N+QKE ++
Sbjct: 224 PDFAYSPNPHNGGSGSDRNNSEPEPKGK-SVPRRDAPPKPTQQAPTSSLTPQNRQKEQQK 282
Query: 244 ---IDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK---GGVQ 83
D KLASARKRL ENY+EA+NAK+QRTIQ +D+H++PKP KN+FF++NK GG Q
Sbjct: 283 EANFDSQKLASARKRLQENYKEAENAKRQRTIQVMDIHEIPKP-KNAFFSKNKGSGGGSQ 341
Query: 82 ARQW 71
R W
Sbjct: 342 GRHW 345
>ref|XP_007048434.1| Transcription elongation factor (TFIIS) family protein, putative
isoform 1 [Theobroma cacao]
gi|590709002|ref|XP_007048435.1| Transcription elongation
factor (TFIIS) family protein, putative isoform 1
[Theobroma cacao] gi|508700695|gb|EOX92591.1|
Transcription elongation factor (TFIIS) family protein,
putative isoform 1 [Theobroma cacao]
gi|508700696|gb|EOX92592.1| Transcription elongation
factor (TFIIS) family protein, putative isoform 1
[Theobroma cacao]
Length = 336
Score = 336 bits (862), Expect = 3e-89
Identities = 190/352 (53%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATT-VPRCRNCD 935
MDLDDFRSVL+ VDVW FIDTAI VA DYG ELK RRD IV RLYAT+ V +CRNCD
Sbjct: 1 MDLDDFRSVLETAEVDVWTFIDTAILVASLDYGPELKQRRDRIVERLYATSMVTQCRNCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGI-GASPSTPESINREEDQDRTNDLSID 758
S+ E A +++E S D G SP+ P+S N +++ D L D
Sbjct: 61 FGERPSD----------YEVKADLKRESSHEDKRRGGSPNAPQSDNGDDELDPYGGL-FD 109
Query: 757 SEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEV 578
EQ +IL IKEHLE P QSEDSL++LLQ+L+DMDITF+ALKETDIGRHVN LRKH S +V
Sbjct: 110 DEQKKILEIKEHLEEPHQSEDSLIDLLQSLADMDITFQALKETDIGRHVNILRKHSSNDV 169
Query: 577 RKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLDFGYSP 398
R+LVKQLVRKWK++VDEWV+LN G+ +S ++ADGDSP++ P ++ + +QV DF YSP
Sbjct: 170 RRLVKQLVRKWKEIVDEWVRLNQPGELESSALMADGDSPQRKPPQNGY--HQVPDFAYSP 227
Query: 397 NHHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPISCTTANKQKESKE--IDLDKLA 224
N H+ S + P K R + K + S + N+Q+E KE D ++LA
Sbjct: 228 NPHNGSSGSDKNNSEPERKPKPIPPRNEPPPKPTYS--APVLQNRQREQKESNFDSERLA 285
Query: 223 SARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGG-VQARQW 71
SARKRL ENY+EA+NAK+QRTIQ +D+H+LPKP KN+FF +NKGG Q R W
Sbjct: 286 SARKRLQENYKEAENAKRQRTIQVMDIHELPKP-KNAFFGKNKGGSSQGRHW 336
>ref|XP_012458765.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X2 [Gossypium raimondii]
gi|763808077|gb|KJB74979.1| hypothetical protein
B456_012G017100 [Gossypium raimondii]
Length = 336
Score = 333 bits (853), Expect = 3e-88
Identities = 195/356 (54%), Positives = 240/356 (67%), Gaps = 9/356 (2%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATT-VPRCRNCD 935
MDLDDFRSVL+ GVDVW FIDTAI VA DYG+E K RRDGIV RLYAT+ V RC++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQEFKQRRDGIVERLYATSMVTRCKSCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGA---SPSTPESINREEDQDRTNDLS 764
RSN + KE S H+G SP TP S N ++D D L
Sbjct: 61 F-GERSNVYQ-------------VNKEDSPHEGKEGGKGSPFTPHSDNEDDDMDPYGGL- 105
Query: 763 IDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPST 584
D EQ R+L IKE LE+PDQSEDSLV+LLQ+L+DMDITF+ALKETDIGRHVN LRKH S
Sbjct: 106 FDDEQKRVLEIKERLELPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSN 165
Query: 583 EVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNG-NQVLDFG 407
+VR+LVKQLVRKWK++VDEWV++N G+ + ++ADGDSP+Q K NG QV DF
Sbjct: 166 DVRRLVKQLVRKWKEIVDEWVRVNQPGEPEPAGLMADGDSPQQ---KLPQNGRQQVPDFA 222
Query: 406 YSPNHHHTDESSGFSKQTPVVDGKG-AASRRDVQTKKSQS--PISCTTANKQKESKEIDL 236
YSPN H+ S + P K R+D ++ + S P + +QKES D
Sbjct: 223 YSPNPHNGSFGSEKNNSEPERKPKPIPPCRKDPPSRHTHSTPPQNVQRQREQKES-NFDS 281
Query: 235 DKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK-GGVQARQW 71
++LASARKRL E+Y+EA+NAKKQRT+Q +D+H+LPKP KN+FFA+NK GG Q R W
Sbjct: 282 ERLASARKRLQESYKEAENAKKQRTVQVMDIHELPKP-KNAFFAKNKGGGSQGRHW 336
>ref|XP_002279514.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X3 [Vitis vinifera]
Length = 305
Score = 332 bits (851), Expect = 5e-88
Identities = 188/345 (54%), Positives = 234/345 (67%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATTVPRCRNCDL 932
MD D+FR +L+++GVDVW+FI+TAISVA +DYG+EL+ RRDGIV R+Y ++ RC +C+L
Sbjct: 1 MDRDEFRLILRNSGVDVWEFINTAISVAYSDYGDELRHRRDGIVERMYMSS--RCGSCNL 58
Query: 931 EAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSIDSE 752
S L+ EKE D SP TP+SINR +DR L +D E
Sbjct: 59 RYQHSG----------LDKGCDEEKEDEKDDEKDKSPLTPQSINRSGSEDRYGGL-LDEE 107
Query: 751 QSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEVRK 572
++RIL IKEHLE PDQ +DS+V+LLQTL+DMDITFKALKETDIGRHVN LRKHPS +VR+
Sbjct: 108 EARILDIKEHLEAPDQPDDSIVDLLQTLADMDITFKALKETDIGRHVNRLRKHPSNDVRR 167
Query: 571 LVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLDFGYSPNH 392
LVK LVRKWKDLVDEWVK N +G+ +S ++A+GDSP Q ++ H +QV DFGYSPN
Sbjct: 168 LVKHLVRKWKDLVDEWVKSNPAGEFTSSALMAEGDSPPQKIPRTGH--HQVPDFGYSPNP 225
Query: 391 HHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQSPISCTTANKQKESKEIDLDKLASARK 212
+ SSG K + K KQ+++ ID DK ASARK
Sbjct: 226 Q--NGSSGSDKNNAEPEPK-----------------------KQRDT-AIDPDKFASARK 259
Query: 211 RLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNKGGVQAR 77
RLHENYQEAQNAKKQRTIQ +D+HD+PKP KN+FFA+ K G Q R
Sbjct: 260 RLHENYQEAQNAKKQRTIQVMDIHDIPKP-KNTFFAKPKVGSQGR 303
>ref|XP_012451443.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Gossypium raimondii]
gi|763800943|gb|KJB67898.1| hypothetical protein
B456_010G216800 [Gossypium raimondii]
Length = 335
Score = 330 bits (847), Expect = 2e-87
Identities = 182/350 (52%), Positives = 234/350 (66%), Gaps = 3/350 (0%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATT-VPRCRNCD 935
MDLDDFRSVL+ GVDVW FIDTAI VA DYG+ELK RRDGIV RLYAT+ V +C++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQELKQRRDGIVERLYATSMVTKCKSCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSIDS 755
SNG + N +G+ SP +P+S N +D D L D
Sbjct: 61 F-GEGSNG---------YQLNNESNPHEGGEEGVTGSPFSPQSDNENDDFDPYGGL-FDD 109
Query: 754 EQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEVR 575
EQ R+L IKE LE+PDQSED+LV+LLQ+L+DMDITF+ALKETDIGRHVN LRKH S +VR
Sbjct: 110 EQKRVLEIKERLELPDQSEDTLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVR 169
Query: 574 KLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLDFGYSPN 395
+LVK LVRKWKD+VDEWV++N G+ + ++ DGDSP+Q P + + QV DF YSPN
Sbjct: 170 RLVKHLVRKWKDIVDEWVRVNQPGEHEPAALM-DGDSPQQKPPQ--NGRQQVPDFAYSPN 226
Query: 394 HHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQ-SPISCTTANKQKESKEIDLDKLASA 218
H+ S + P K R+D ++ + +P ++++ D ++LASA
Sbjct: 227 PHNGGSGSEKNNSEPERKPKPIPPRKDPPSRPTHLTPPQNVQRQREQKETNFDAERLASA 286
Query: 217 RKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK-GGVQARQW 71
RKRL E+Y+EA+NAKKQRT+Q +D+H+LPKP KN+FF RNK GG Q R W
Sbjct: 287 RKRLQESYKEAENAKKQRTVQVMDIHELPKP-KNAFFGRNKGGGSQGRHW 335
>ref|XP_011625935.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Amborella trichopoda]
Length = 358
Score = 330 bits (845), Expect = 3e-87
Identities = 193/374 (51%), Positives = 254/374 (67%), Gaps = 27/374 (7%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYAT-TVPRCRNCD 935
MDLD+FRS+LK++G+DVW I++AIS+A DY +E K RRDGI +LY + +V C NCD
Sbjct: 1 MDLDEFRSLLKNSGLDVWTAIESAISLAQMDYRDEFKVRRDGIAEKLYTSNSVVGCHNCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESI---------NREEDQD 782
L+ R + T KEK E+ SSHD GASPSTP+S+ N E++
Sbjct: 61 LDLARLS-TTKEK---------CREERESSHDK-GASPSTPQSLVHSHRDEEQNGREEEH 109
Query: 781 RTNDLSIDSE---------------QSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITF 647
R + + E Q ++LAIKE LE PDQSEDS+++LLQ+L+DMD+T
Sbjct: 110 REPVMKREEEGNRRDEEHGSHGGLIQDKLLAIKEDLEDPDQSEDSVIDLLQSLTDMDVTV 169
Query: 646 KALKETDIGRHVNSLRKHPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGD 467
KALKETDIGRHVN LRKHPSTEVR+LVK L+RKWK+LVDEWV +T+G+ AA+ I+A+G+
Sbjct: 170 KALKETDIGRHVNGLRKHPSTEVRRLVKHLIRKWKELVDEWV--STAGEGAAAAIVAEGE 227
Query: 466 SPRQ-MPAKSIHNGNQVLDFGYSPNHHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQ- 293
SP+Q A++ NGNQV + +SPN + + G + GKG +R+ QTK +
Sbjct: 228 SPQQNHQARASQNGNQVRESKHSPNGYSSGSGMGPNYSEIGSKGKGITPQREAQTKPNPI 287
Query: 292 SPISCTTANKQKESKEIDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNS 113
+PIS A KQKE+ IDL +LASARKRLHENYQEA+NAK+QRTIQ +D+HD+PKP KN+
Sbjct: 288 APIS-IPAQKQKEN-AIDLQRLASARKRLHENYQEAENAKRQRTIQVMDIHDIPKP-KNT 344
Query: 112 FFARNKGGVQARQW 71
F +RNKGG + W
Sbjct: 345 FISRNKGGFHKQHW 358
>ref|XP_012458764.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c isoform X1 [Gossypium raimondii]
Length = 337
Score = 329 bits (843), Expect = 4e-87
Identities = 196/357 (54%), Positives = 239/357 (66%), Gaps = 10/357 (2%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATT-VPRCRNCD 935
MDLDDFRSVL+ GVDVW FIDTAI VA DYG+E K RRDGIV RLYAT+ V RC++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQEFKQRRDGIVERLYATSMVTRCKSCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGA---SPSTPESINREEDQDRTNDLS 764
RSN + KE S H+G SP TP S N ++D D L
Sbjct: 61 F-GERSNVYQ-------------VNKEDSPHEGKEGGKGSPFTPHSDNEDDDMDPYGGL- 105
Query: 763 IDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPST 584
D EQ R+L IKE LE+PDQSEDSLV+LLQ+L+DMDITF+ALKETDIGRHVN LRKH S
Sbjct: 106 FDDEQKRVLEIKERLELPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSN 165
Query: 583 EVRKLVKQLVRKWKDLVDEWVKLNTSGQ-TAASTIIADGDSPRQMPAKSIHNG-NQVLDF 410
+VR+LVKQLVRKWK++VDEWV++N G+ A + ADGDSP+Q K NG QV DF
Sbjct: 166 DVRRLVKQLVRKWKEIVDEWVRVNQPGEPEPAGLMAADGDSPQQ---KLPQNGRQQVPDF 222
Query: 409 GYSPNHHHTDESSGFSKQTPVVDGKG-AASRRDVQTKKSQS--PISCTTANKQKESKEID 239
YSPN H+ S + P K R+D ++ + S P + +QKES D
Sbjct: 223 AYSPNPHNGSFGSEKNNSEPERKPKPIPPCRKDPPSRHTHSTPPQNVQRQREQKES-NFD 281
Query: 238 LDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK-GGVQARQW 71
++LASARKRL E+Y+EA+NAKKQRT+Q +D+H+LPKP KN+FFA+NK GG Q R W
Sbjct: 282 SERLASARKRLQESYKEAENAKKQRTVQVMDIHELPKP-KNAFFAKNKGGGSQGRHW 337
>gb|KHG16250.1| Transcription elongation factor A N-terminal and central
domain-containing 2 [Gossypium arboreum]
Length = 335
Score = 327 bits (838), Expect = 2e-86
Identities = 181/350 (51%), Positives = 233/350 (66%), Gaps = 3/350 (0%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATT-VPRCRNCD 935
MDLDDFRSVL+ GVDVW FIDTAI VA DYG+ELK RRDGIV RLYAT+ V +C++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDTAILVASLDYGQELKQRRDGIVERLYATSMVTKCKSCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINREEDQDRTNDLSIDS 755
SNG + N +G+ SP +P+S N +D D L D
Sbjct: 61 F-GEGSNG---------YQLNNESNPHEGGEEGVKGSPFSPQSDNENDDFDPYGGL-FDD 109
Query: 754 EQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHPSTEVR 575
EQ R+L IKE LE+PDQSED+LV+LLQ+L+DMDITF+ALKETDIGRHVN LRKH S +VR
Sbjct: 110 EQKRVLEIKERLELPDQSEDTLVDLLQSLADMDITFQALKETDIGRHVNKLRKHSSNDVR 169
Query: 574 KLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQVLDFGYSPN 395
+LVK LVRKWKD+VDEWV++N G+ + ++ DGDS +Q P + + QV DF YSPN
Sbjct: 170 RLVKHLVRKWKDIVDEWVRVNQPGEHEPAALM-DGDSAQQKPPQ--NGRQQVPDFAYSPN 226
Query: 394 HHHTDESSGFSKQTPVVDGKGAASRRDVQTKKSQ-SPISCTTANKQKESKEIDLDKLASA 218
H+ S + P K R+D ++ + +P ++++ D ++LASA
Sbjct: 227 PHNGGSGSEKNNSEPDRKPKPIPPRKDPPSRATHLTPPQNVQRQREQKETNFDAERLASA 286
Query: 217 RKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK-GGVQARQW 71
RKRL E+Y+EA+NAKKQRT+Q +D+H+LPKP KN+FF RNK GG Q R W
Sbjct: 287 RKRLQESYKEAENAKKQRTVQVMDIHELPKP-KNAFFGRNKGGGSQGRHW 335
>ref|XP_009404348.1| PREDICTED: probable mediator of RNA polymerase II transcription
subunit 26c [Musa acuminata subsp. malaccensis]
Length = 347
Score = 326 bits (835), Expect = 4e-86
Identities = 183/341 (53%), Positives = 231/341 (67%), Gaps = 12/341 (3%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYAT-TVPRCRNCD 935
M+ +D R ++D GVD+W IDTAISVA A++ +EL+ RRDGIV RLYA RCRNC
Sbjct: 1 MEAEDLRRWMRDAGVDLWALIDTAISVAAAEHRQELRARRDGIVQRLYAAGDAGRCRNC- 59
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGASPSTPESINR--------EEDQDR 779
G+ + ++ +++S EK + ASP +PES+NR E+D R
Sbjct: 60 --GSSGGGSVVPRREEAKGSSSSAEKRAAVG---AASPPSPESMNRTAAAAEEEEQDDQR 114
Query: 778 TNDLSIDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLR 599
T SID EQS+IL IK L+ PDQSEDSLV LLQ L+DMDITF+ALKETDIGRHVN LR
Sbjct: 115 TYGRSIDEEQSKILGIKRFLDDPDQSEDSLVRLLQNLADMDITFRALKETDIGRHVNGLR 174
Query: 598 KHPSTEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNGNQV 419
KHPS+EVR+LVKQLVRKWKDLVDEWV N++ TA+ II DGDSP+Q+ K+ NG+ V
Sbjct: 175 KHPSSEVRRLVKQLVRKWKDLVDEWVTSNSACDTASPAIITDGDSPQQISGKNNQNGHHV 234
Query: 418 LDFGYSPNHHHTDESS-GFSKQTPVVDGKGAASRRDVQTKKSQSPISCTTANKQKESKE- 245
+FGYSPN H SS S ++ K A + + +P S + A+K KE K+
Sbjct: 235 PEFGYSPNPHAGYLSSERNSSESVEPKAKSAINPTKTNNTSTHAPSSASPAHKLKEHKDS 294
Query: 244 -IDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKP 125
+D ++LASARKRLHENYQEAQNAKKQRTIQ +D+H +PKP
Sbjct: 295 LLDPERLASARKRLHENYQEAQNAKKQRTIQVMDIHQIPKP 335
>ref|XP_007011109.1| Transcription elongation factor (TFIIS) family protein, putative
isoform 1 [Theobroma cacao] gi|508728022|gb|EOY19919.1|
Transcription elongation factor (TFIIS) family protein,
putative isoform 1 [Theobroma cacao]
Length = 337
Score = 325 bits (833), Expect = 6e-86
Identities = 196/360 (54%), Positives = 240/360 (66%), Gaps = 13/360 (3%)
Frame = -3
Query: 1111 MDLDDFRSVLKDTGVDVWDFIDTAISVACADYGEELKDRRDGIVARLYATT-VPRCRNCD 935
MDLDDFRSVL+ GVDVW FID+AI VA DYG+ELK RRDGIV RLYAT+ V RC++CD
Sbjct: 1 MDLDDFRSVLETAGVDVWTFIDSAILVASLDYGQELKQRRDGIVERLYATSMVTRCKSCD 60
Query: 934 LEAPRSNGTDKEKNIKSLEANASIEKEMSSHDGIGA-----SPSTPESINREEDQDRTND 770
RSNG + KE S ++G G SP TP+S N + D D
Sbjct: 61 F-GERSNGYQ-------------VNKEGSPNEGKGGEGGRESPFTPQSDNEDGDLDPYGG 106
Query: 769 LSIDSEQSRILAIKEHLEVPDQSEDSLVNLLQTLSDMDITFKALKETDIGRHVNSLRKHP 590
L D EQ R+L IKE LE PDQSEDSLV+LLQ+L+DMDITF+ALKETDIGRHVN LRKH
Sbjct: 107 L-FDDEQKRVLEIKESLEEPDQSEDSLVDLLQSLADMDITFQALKETDIGRHVNKLRKHS 165
Query: 589 STEVRKLVKQLVRKWKDLVDEWVKLNTSGQTAASTIIADGDSPRQMPAKSIHNG-NQVLD 413
S +VR+LVKQLVRKWK++VDEWV++N G+ ++ ++ DGDSP+Q K NG QV D
Sbjct: 166 SNDVRRLVKQLVRKWKEIVDEWVRVNQPGELESAALM-DGDSPQQ---KLPQNGRQQVPD 221
Query: 412 FGYSPNHHHTDESSGFSKQTPVVDGKG---AASRRDVQTKKSQS--PISCTTANKQKESK 248
F YSPN H + S G K + K R+D + + S P + +QKES
Sbjct: 222 FAYSPNPH--NGSFGLEKNNSEPERKPKPIPPPRKDPPPRPTHSTPPQNVQRQREQKES- 278
Query: 247 EIDLDKLASARKRLHENYQEAQNAKKQRTIQKLDLHDLPKPSKNSFFARNK-GGVQARQW 71
D ++LASARKRL NY+EA+NAKKQRTIQ +D+H+LPKP KN+FF +NK GG Q R W
Sbjct: 279 NFDSERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKP-KNAFFGKNKGGGSQGRHW 337