BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00013814
         (2437 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010254912.1| PREDICTED: DNA-directed RNA polymerase III s...   533   e-148
ref|XP_008777120.1| PREDICTED: DNA-directed RNA polymerase III s...   531   e-147
ref|XP_008777118.1| PREDICTED: DNA-directed RNA polymerase III s...   531   e-147
ref|XP_010906546.1| PREDICTED: DNA-directed RNA polymerase III s...   524   e-145
ref|XP_010906545.1| PREDICTED: DNA-directed RNA polymerase III s...   518   e-144
ref|XP_010906544.1| PREDICTED: DNA-directed RNA polymerase III s...   518   e-144
ref|XP_009392124.1| PREDICTED: DNA-directed RNA polymerase III s...   508   e-140
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   506   e-140
ref|XP_010649170.1| PREDICTED: DNA-directed RNA polymerase III s...   505   e-140
ref|XP_010649171.1| PREDICTED: DNA-directed RNA polymerase III s...   501   e-139
ref|XP_010649168.1| PREDICTED: DNA-directed RNA polymerase III s...   500   e-138
emb|CDP02819.1| unnamed protein product [Coffea canephora]            473   e-130
ref|XP_008453719.1| PREDICTED: DNA-directed RNA polymerase III s...   446   e-122
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   446   e-122
ref|XP_007046991.1| SIN-like family protein, putative isoform 1 ...   444   e-121
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   439   e-120
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr...   437   e-119
ref|XP_012079063.1| PREDICTED: DNA-directed RNA polymerase III s...   434   e-118
ref|XP_012491679.1| PREDICTED: DNA-directed RNA polymerase III s...   432   e-118
gb|KHG05676.1| DNA-directed RNA polymerase III subunit RPC5 [Gos...   431   e-117

>ref|XP_010254912.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Nelumbo
            nucifera]
          Length = 680

 Score =  533 bits (1374), Expect = e-148
 Identities = 321/691 (46%), Positives = 425/691 (61%), Gaps = 30/691 (4%)
 Frame = -2

Query: 2328 AKATSRTTGRFQPNAGKLKAKPKTEPLPEPQ-----IKKQEDSRL--------------- 2209
            ++A SR   RF P + K K +PK EP+ E +     +KKQEDS+                
Sbjct: 17   SQAASRKPSRFLPKSSKPKLRPKPEPVSESEPAALPVKKQEDSQPSLDATVKAAFEPSPP 76

Query: 2208 PPNTSTLHTTTQKVEEKPSMEAEMAIVPNLDADGAANXXXXXXXXXXXXXXXEIDVFFNP 2029
            PP +STL+   +   E+   +AE  +VP ++ DG  +                IDVFFNP
Sbjct: 77   PPASSTLNFMAK---EEVETKAEAEVVP-MEEDGDEDRVVRE-----------IDVFFNP 121

Query: 2028 SPFDGNAQLYIMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAG 1849
            SP D + QLY++QYPLR CWRPYEL+ERC+EVRIKP+ S++EVDL    G    ++  A 
Sbjct: 122  SPLDTDTQLYVLQYPLRPCWRPYELDERCKEVRIKPESSEIEVDLRTYDGDNCNNDDAAK 181

Query: 1848 PLGFEKQTLSSS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNVLQ-KKNNVA 1675
                 KQTLSS  + P  TGYAVG L  NKLHLNPVHAV++LRPS+ +L     KK+N+ 
Sbjct: 182  NRKMTKQTLSSLWKPPNTTGYAVGVLIGNKLHLNPVHAVVQLRPSMEHLKSSNLKKSNII 241

Query: 1674 GSEVV------ACSDTGKLVEATNE-TVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESS 1516
              E+       +    GKL+ + +E   DDA++W+SLEYH  DS  S  ++Q +VA+ESS
Sbjct: 242  PDEINEEKPSGSSKKQGKLLGSLDEQNKDDAESWVSLEYHQIDSSISRGYQQKMVARESS 301

Query: 1515 HIQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALM 1336
             IQF+++S DY+NSLCPGT S+ +  +GPSRRF L+LPLEER K + S+G  V+RF AL 
Sbjct: 302  PIQFSMNSYDYLNSLCPGTSSDNNRVKGPSRRFLLSLPLEERFKIFLSKGTQVYRFTALK 361

Query: 1335 HLAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRCANVQALARDYILLLFSASKYIQFGQL 1156
            H APD ++ ++L VLQ YA LV+GLWV KS+L C  VQALARDY+LL FS    I + +L
Sbjct: 362  HFAPDKSDEDLLAVLQGYADLVQGLWVTKSALLCEGVQALARDYVLLCFSKGPLISYEKL 421

Query: 1155 RKVKISNEILVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIM 976
             +  +S +IL   L  LA+E  +   WKF+EP D  F K +P+IV+EQ+  W  R K I 
Sbjct: 422  NETGLSRDILKRVLNSLAIERPSFKDWKFKEPTDMLFTKNFPDIVREQQHRWEIREKKIK 481

Query: 975  DRVHGYGKRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRD 796
            D +H   K    T+ +N        ++ R SS+ AD  A+   +     GT TMS ETR+
Sbjct: 482  DLMHRPVK-GGPTMKQNIT------NRPRTSSN-ADQSAKVNVNGTLGCGTVTMSDETRE 533

Query: 795  ALPKALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQPELQT 616
            ALPKAL ELF  HKVCSLQLICQGLRD+AVSK+               +   A  PELQ 
Sbjct: 534  ALPKALRELFRIHKVCSLQLICQGLRDLAVSKNNKAHARAAVAAAQGVS---APLPELQA 590

Query: 615  IISQIAINIHGVYVLKPL-GNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDRE 439
            +I Q+AIN+HGVYVLK    +  +DPLR+VVI+LF  K  NA LK+ +  EA KI L+R 
Sbjct: 591  VIDQVAINVHGVYVLKSSEEHPELDPLRNVVINLFCAKGPNACLKREEIFEAAKIALERT 650

Query: 438  FSNSEYMQVLNELCVSSKGGGWMLKSGDGKP 346
             + +E M+V +ELC+ S+   W LKSGDGKP
Sbjct: 651  ITPNELMKVTSELCI-SRSNAWFLKSGDGKP 680


>ref|XP_008777120.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2
            [Phoenix dactylifera]
          Length = 701

 Score =  531 bits (1368), Expect = e-147
 Identities = 309/676 (45%), Positives = 414/676 (61%), Gaps = 27/676 (3%)
 Frame = -2

Query: 2301 RFQPNA-GKLKAKPKTEPLPEPQ--------IKKQEDSRLPPNTSTLHTTTQKVEEKPSM 2149
            RFQP   GK++A   T+P P P         IKKQ++  +            K +E    
Sbjct: 43   RFQPKIKGKMRADSATDPGPLPAPPRPPLAPIKKQDEDDV---------AMFKADEASQE 93

Query: 2148 EAEMAI-VPNLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYIMQYPLRAC 1972
             A  +   PN   +  A                EIDVFF P+P D +  LY+MQYPLR  
Sbjct: 94   PASSSFSFPNGAEE--AESEPVEVDDGEDTVVREIDVFFTPAPLDEDTCLYVMQYPLRPS 151

Query: 1971 WRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVTG 1792
            WRPYEL+ERC+EVR+KP+QSK+EVDL ++V   N+D  V  P+  EKQTLSSS+A F T 
Sbjct: 152  WRPYELDERCEEVRVKPKQSKIEVDLSLDVNSENYDRDVDEPMRIEKQTLSSSKASFATS 211

Query: 1791 YAVGFLAENKLHLNPVHAVMKLRPSLGYLNV-LQKKNNVAGSEVVACSDTG--------- 1642
            YAVG L  N+LHLNPVHAV++LRPS+ +++  LQ + + A     +   T          
Sbjct: 212  YAVGILRGNQLHLNPVHAVVQLRPSMSHIDAGLQGRKHSAKGVQGSAKSTDEIPEPPKPS 271

Query: 1641 -----KLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVN 1477
                 K+ E +NE ++D + WISLEYH  DSPF+ ++ Q + A+E++ IQF +  SDYVN
Sbjct: 272  VRQGKKVSEDSNENINDYEPWISLEYHPIDSPFAERYHQKMAAEENNLIQFTMQPSDYVN 331

Query: 1476 SLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVLK 1297
            +LCPGT ++    +GP RR  L++PLEER+KKW +EG  V+RF ALMHLAP ++E +VLK
Sbjct: 332  TLCPGTSTDKKRTKGPPRRVLLSMPLEERLKKWLTEGSQVNRFDALMHLAPTNSEKDVLK 391

Query: 1296 VLQQYAVLVRGLWVAKSSLRCANVQALARDYILLLFSASKYIQFGQLRKVKISNEILVHA 1117
            VLQ +A LV+GLWV KSSL      ALARD IL LFS +  I    L+ ++  +  L H 
Sbjct: 392  VLQLHAYLVQGLWVTKSSLLYEGFNALARDRILFLFSTNPVIHSDNLKTLR--SAPLKHI 449

Query: 1116 LTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNTST 937
            L+PLAVE S    WKF+E  D +F+K YP+IVKEQ  AWSSR +  MD +  +GK N   
Sbjct: 450  LSPLAVERSVFSDWKFKEATDISFLKRYPDIVKEQECAWSSREEQFMDNLRRFGK-NIHM 508

Query: 936  VARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNH 757
            + +NS+      + G +     D  A   ++   S   TTMS+ETR+ LP+AL ++F   
Sbjct: 509  MTKNSLSPNIVKNTGALGR--VDPDANRSKEGTMSSAGTTMSSETRENLPRALFKIFQEK 566

Query: 756  KVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQ--PELQTIISQIAINIHG 583
            +V SL  I  GLRD+A+S S+ P+           A   A    PELQ++ISQ+A NIHG
Sbjct: 567  RVRSLNSIVSGLRDLAISSSSRPRDDAKTKALANAAKNGADAPLPELQSVISQVAANIHG 626

Query: 582  VYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNE 403
            +YVLK +GN  +DPLR+VVIDLFRGKE NAKLKK +  +A + +L R  ++SEY QV+NE
Sbjct: 627  LYVLKSMGNPTLDPLRNVVIDLFRGKEPNAKLKKQEISKAAEFRLKRNITDSEYNQVVNE 686

Query: 402  LCVSSKGGGWMLKSGD 355
            LCVSSK G W+L+S D
Sbjct: 687  LCVSSK-GAWVLRSDD 701


>ref|XP_008777118.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
            [Phoenix dactylifera] gi|672197655|ref|XP_008777119.1|
            PREDICTED: DNA-directed RNA polymerase III subunit RPC5
            isoform X1 [Phoenix dactylifera]
          Length = 702

 Score =  531 bits (1368), Expect = e-147
 Identities = 313/677 (46%), Positives = 418/677 (61%), Gaps = 28/677 (4%)
 Frame = -2

Query: 2301 RFQPNA-GKLKAKPKTEPLPEPQ--------IKKQEDSRLPPNTSTLHTTTQKVEEKPSM 2149
            RFQP   GK++A   T+P P P         IKKQ++  +            K +E    
Sbjct: 43   RFQPKIKGKMRADSATDPGPLPAPPRPPLAPIKKQDEDDV---------AMFKADEASQE 93

Query: 2148 EAEMAI-VPNLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYIMQYPLRAC 1972
             A  +   PN   +  A                EIDVFF P+P D +  LY+MQYPLR  
Sbjct: 94   PASSSFSFPNGAEE--AESEPVEVDDGEDTVVREIDVFFTPAPLDEDTCLYVMQYPLRPS 151

Query: 1971 WRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVTG 1792
            WRPYEL+ERC+EVR+KP+QSK+EVDL ++V   N+D  V  P+  EKQTLSSS+A F T 
Sbjct: 152  WRPYELDERCEEVRVKPKQSKIEVDLSLDVNSENYDRDVDEPMRIEKQTLSSSKASFATS 211

Query: 1791 YAVGFLAENKLHLNPVHAVMKLRPSLGYLNV-LQ-KKNNVAGSEVVACS----------- 1651
            YAVG L  N+LHLNPVHAV++LRPS+ +++  LQ +K++  G +  A S           
Sbjct: 212  YAVGILRGNQLHLNPVHAVVQLRPSMSHIDAGLQGRKHSAKGVQGSAKSTDEIPEPPKPS 271

Query: 1650 --DTGKLV-EATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYV 1480
                GK V E +NE ++D + WISLEYH  DSPF+ ++ Q + A+E++ IQF +  SDYV
Sbjct: 272  VRQQGKKVSEDSNENINDYEPWISLEYHPIDSPFAERYHQKMAAEENNLIQFTMQPSDYV 331

Query: 1479 NSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVL 1300
            N+LCPGT ++    +GP RR  L++PLEER+KKW +EG  V+RF ALMHLAP ++E +VL
Sbjct: 332  NTLCPGTSTDKKRTKGPPRRVLLSMPLEERLKKWLTEGSQVNRFDALMHLAPTNSEKDVL 391

Query: 1299 KVLQQYAVLVRGLWVAKSSLRCANVQALARDYILLLFSASKYIQFGQLRKVKISNEILVH 1120
            KVLQ +A LV+GLWV KSSL      ALARD IL LFS +  I    L+ ++  +  L H
Sbjct: 392  KVLQLHAYLVQGLWVTKSSLLYEGFNALARDRILFLFSTNPVIHSDNLKTLR--SAPLKH 449

Query: 1119 ALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNTS 940
             L+PLAVE S    WKF+E  D +F+K YP+IVKEQ  AWSSR +  MD +  +GK N  
Sbjct: 450  ILSPLAVERSVFSDWKFKEATDISFLKRYPDIVKEQECAWSSREEQFMDNLRRFGK-NIH 508

Query: 939  TVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNN 760
             + +NS+      + G +     D  A   ++   S   TTMS+ETR+ LP+AL ++F  
Sbjct: 509  MMTKNSLSPNIVKNTGALGR--VDPDANRSKEGTMSSAGTTMSSETRENLPRALFKIFQE 566

Query: 759  HKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQ--PELQTIISQIAINIH 586
             +V SL  I  GLRD+A+S S+ P+           A   A    PELQ++ISQ+A NIH
Sbjct: 567  KRVRSLNSIVSGLRDLAISSSSRPRDDAKTKALANAAKNGADAPLPELQSVISQVAANIH 626

Query: 585  GVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLN 406
            G+YVLK +GN  +DPLR+VVIDLFRGKE NAKLKK +  +A + +L R  ++SEY QV+N
Sbjct: 627  GLYVLKSMGNPTLDPLRNVVIDLFRGKEPNAKLKKQEISKAAEFRLKRNITDSEYNQVVN 686

Query: 405  ELCVSSKGGGWMLKSGD 355
            ELCVSSK G W+L+S D
Sbjct: 687  ELCVSSK-GAWVLRSDD 702


>ref|XP_010906546.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X3
            [Elaeis guineensis]
          Length = 695

 Score =  524 bits (1349), Expect = e-145
 Identities = 302/670 (45%), Positives = 411/670 (61%), Gaps = 21/670 (3%)
 Frame = -2

Query: 2301 RFQPNA-GKLKAKPKTEPLPEPQIKKQEDSRLPPNTSTLHTTTQKVEEKPSMEAEMAIVP 2125
            RFQP   G++KA P T+  P           LPP +       +K ++   M  E A  P
Sbjct: 44   RFQPKIKGRIKADPATDSGP-----------LPPPSRPPTAPIKKQDDDVGMSQESASSP 92

Query: 2124 NLDADGA--ANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYIMQYPLRACWRPYELN 1951
                +GA  A                EIDVFF P+P D +  LY+MQYPLR  WRPYELN
Sbjct: 93   VSFPNGAEEAESEPMEVDDGEDTVVREIDVFFTPAPVDEDTCLYVMQYPLRPSWRPYELN 152

Query: 1950 ERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVTGYAVGFLA 1771
            ERC+EVR+KP+QSK+EVDL ++V   N+D  V  PL  EKQ LSSS+A F T YAVG L 
Sbjct: 153  ERCEEVRVKPKQSKIEVDLSLDVDSENYDRDVDEPLRIEKQILSSSKASFATSYAVGLLR 212

Query: 1770 ENKLHLNPVHAVMKLRPSLGYLNV-LQKKNNVAGSEVVACSDTG---------------K 1639
             N+LHLNPVHAV++LRPS+ +++  LQ++ + A     +   T                K
Sbjct: 213  GNQLHLNPVHAVVQLRPSMDHIDAGLQRRKHSAKGVQDSAKSTDEISEPPKPSIRQQGKK 272

Query: 1638 LVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVNSLCPGT 1459
            + E +NE +D  + WISLEYH  D PF+ ++ Q + A+E + +QF +  SDYVN+LCPGT
Sbjct: 273  VSEDSNENIDH-EPWISLEYHPIDGPFAERYHQKMAAEEKNIVQFTMKPSDYVNTLCPGT 331

Query: 1458 PSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVLKVLQQYA 1279
             ++     GP RR  L++PLEER+ KW +E   V+ F ALM+LAP ++E +VLK+LQ +A
Sbjct: 332  SADKKRTRGPPRRVLLSMPLEERLNKWLTECSQVNHFDALMYLAPTNSEKDVLKLLQLHA 391

Query: 1278 VLVRGLWVAKSSLRCANVQALARDYILLLFSASKYIQFGQLRKVKISNEILVHALTPLAV 1099
             LV+GLWV KSSL      ALARD+IL LFS +  I   +L+ ++  +  L H L+ LAV
Sbjct: 392  YLVQGLWVTKSSLLYEGFNALARDHILFLFSKNPVIHSDKLKTLR--SAPLKHILSTLAV 449

Query: 1098 EISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNTSTVARNSV 919
            E S    WKF+EP D +F+K YP+IVKEQ  AWSSR +  MD +  +G RN   + +NS+
Sbjct: 450  ERSVFSDWKFKEPTDISFLKRYPDIVKEQECAWSSREEQFMDNLRRFG-RNIHMMTKNSL 508

Query: 918  RIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQ 739
                  + G  ++   D  A   ++   S   TTMS+ETR+ LP+AL+++F   +V S+ 
Sbjct: 509  SPNIMKNTG--AAGRVDPDANRSKEGTMSSAGTTMSSETRENLPRALLKIFQEKRVRSIN 566

Query: 738  LICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQ--PELQTIISQIAINIHGVYVLKP 565
             I  GLRD+A+S S+ P+           A   A    PELQ++ISQ+A+NIHG+YVLK 
Sbjct: 567  SIVSGLRDLAISSSSRPRDDPKTKALVNAAKSGADAPLPELQSVISQVAVNIHGLYVLKS 626

Query: 564  LGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSK 385
            +GN  +DPLR+VVIDLFRGKE NAKLKK +  +A + +L R  ++SEY QV+NELCVSSK
Sbjct: 627  MGNPALDPLRNVVIDLFRGKEPNAKLKKQEICKAAEFRLKRNITDSEYNQVVNELCVSSK 686

Query: 384  GGGWMLKSGD 355
             G W+L+S D
Sbjct: 687  -GAWVLRSDD 695


>ref|XP_010906545.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2
            [Elaeis guineensis]
          Length = 701

 Score =  518 bits (1335), Expect = e-144
 Identities = 302/676 (44%), Positives = 411/676 (60%), Gaps = 27/676 (3%)
 Frame = -2

Query: 2301 RFQPNA-GKLKAKPKTEPLPEPQIKKQEDSRLPPNTSTLHTTTQKVEEKPSMEAEMAIVP 2125
            RFQP   G++KA P T+  P           LPP +       +K ++   M  E A  P
Sbjct: 44   RFQPKIKGRIKADPATDSGP-----------LPPPSRPPTAPIKKQDDDVGMSQESASSP 92

Query: 2124 NLDADGA--ANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNA-------QLYIMQYPLRAC 1972
                +GA  A                EIDVFF P+P D +         LY+MQYPLR  
Sbjct: 93   VSFPNGAEEAESEPMEVDDGEDTVVREIDVFFTPAPVDEDTCVRVFLLNLYVMQYPLRPS 152

Query: 1971 WRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVTG 1792
            WRPYELNERC+EVR+KP+QSK+EVDL ++V   N+D  V  PL  EKQ LSSS+A F T 
Sbjct: 153  WRPYELNERCEEVRVKPKQSKIEVDLSLDVDSENYDRDVDEPLRIEKQILSSSKASFATS 212

Query: 1791 YAVGFLAENKLHLNPVHAVMKLRPSLGYLNV-LQKKNNVAGSEVVACSDTG--------- 1642
            YAVG L  N+LHLNPVHAV++LRPS+ +++  LQ++ + A     +   T          
Sbjct: 213  YAVGLLRGNQLHLNPVHAVVQLRPSMDHIDAGLQRRKHSAKGVQDSAKSTDEISEPPKPS 272

Query: 1641 -----KLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVN 1477
                 K+ E +NE +D  + WISLEYH  D PF+ ++ Q + A+E + +QF +  SDYVN
Sbjct: 273  IRQGKKVSEDSNENIDH-EPWISLEYHPIDGPFAERYHQKMAAEEKNIVQFTMKPSDYVN 331

Query: 1476 SLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVLK 1297
            +LCPGT ++     GP RR  L++PLEER+ KW +E   V+ F ALM+LAP ++E +VLK
Sbjct: 332  TLCPGTSADKKRTRGPPRRVLLSMPLEERLNKWLTECSQVNHFDALMYLAPTNSEKDVLK 391

Query: 1296 VLQQYAVLVRGLWVAKSSLRCANVQALARDYILLLFSASKYIQFGQLRKVKISNEILVHA 1117
            +LQ +A LV+GLWV KSSL      ALARD+IL LFS +  I   +L+ ++  +  L H 
Sbjct: 392  LLQLHAYLVQGLWVTKSSLLYEGFNALARDHILFLFSKNPVIHSDKLKTLR--SAPLKHI 449

Query: 1116 LTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNTST 937
            L+ LAVE S    WKF+EP D +F+K YP+IVKEQ  AWSSR +  MD +  +G RN   
Sbjct: 450  LSTLAVERSVFSDWKFKEPTDISFLKRYPDIVKEQECAWSSREEQFMDNLRRFG-RNIHM 508

Query: 936  VARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNH 757
            + +NS+      + G  ++   D  A   ++   S   TTMS+ETR+ LP+AL+++F   
Sbjct: 509  MTKNSLSPNIMKNTG--AAGRVDPDANRSKEGTMSSAGTTMSSETRENLPRALLKIFQEK 566

Query: 756  KVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQ--PELQTIISQIAINIHG 583
            +V S+  I  GLRD+A+S S+ P+           A   A    PELQ++ISQ+A+NIHG
Sbjct: 567  RVRSINSIVSGLRDLAISSSSRPRDDPKTKALVNAAKSGADAPLPELQSVISQVAVNIHG 626

Query: 582  VYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNE 403
            +YVLK +GN  +DPLR+VVIDLFRGKE NAKLKK +  +A + +L R  ++SEY QV+NE
Sbjct: 627  LYVLKSMGNPALDPLRNVVIDLFRGKEPNAKLKKQEICKAAEFRLKRNITDSEYNQVVNE 686

Query: 402  LCVSSKGGGWMLKSGD 355
            LCVSSK G W+L+S D
Sbjct: 687  LCVSSK-GAWVLRSDD 701


>ref|XP_010906544.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
            [Elaeis guineensis]
          Length = 702

 Score =  518 bits (1334), Expect = e-144
 Identities = 302/677 (44%), Positives = 411/677 (60%), Gaps = 28/677 (4%)
 Frame = -2

Query: 2301 RFQPNA-GKLKAKPKTEPLPEPQIKKQEDSRLPPNTSTLHTTTQKVEEKPSMEAEMAIVP 2125
            RFQP   G++KA P T+  P           LPP +       +K ++   M  E A  P
Sbjct: 44   RFQPKIKGRIKADPATDSGP-----------LPPPSRPPTAPIKKQDDDVGMSQESASSP 92

Query: 2124 NLDADGA--ANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNA-------QLYIMQYPLRAC 1972
                +GA  A                EIDVFF P+P D +         LY+MQYPLR  
Sbjct: 93   VSFPNGAEEAESEPMEVDDGEDTVVREIDVFFTPAPVDEDTCVRVFLLNLYVMQYPLRPS 152

Query: 1971 WRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVTG 1792
            WRPYELNERC+EVR+KP+QSK+EVDL ++V   N+D  V  PL  EKQ LSSS+A F T 
Sbjct: 153  WRPYELNERCEEVRVKPKQSKIEVDLSLDVDSENYDRDVDEPLRIEKQILSSSKASFATS 212

Query: 1791 YAVGFLAENKLHLNPVHAVMKLRPSLGYLNV-LQKKNNVAGSEVVACSDTG--------- 1642
            YAVG L  N+LHLNPVHAV++LRPS+ +++  LQ++ + A     +   T          
Sbjct: 213  YAVGLLRGNQLHLNPVHAVVQLRPSMDHIDAGLQRRKHSAKGVQDSAKSTDEISEPPKPS 272

Query: 1641 ------KLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYV 1480
                  K+ E +NE +D  + WISLEYH  D PF+ ++ Q + A+E + +QF +  SDYV
Sbjct: 273  IRQQGKKVSEDSNENIDH-EPWISLEYHPIDGPFAERYHQKMAAEEKNIVQFTMKPSDYV 331

Query: 1479 NSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVL 1300
            N+LCPGT ++     GP RR  L++PLEER+ KW +E   V+ F ALM+LAP ++E +VL
Sbjct: 332  NTLCPGTSADKKRTRGPPRRVLLSMPLEERLNKWLTECSQVNHFDALMYLAPTNSEKDVL 391

Query: 1299 KVLQQYAVLVRGLWVAKSSLRCANVQALARDYILLLFSASKYIQFGQLRKVKISNEILVH 1120
            K+LQ +A LV+GLWV KSSL      ALARD+IL LFS +  I   +L+ ++  +  L H
Sbjct: 392  KLLQLHAYLVQGLWVTKSSLLYEGFNALARDHILFLFSKNPVIHSDKLKTLR--SAPLKH 449

Query: 1119 ALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNTS 940
             L+ LAVE S    WKF+EP D +F+K YP+IVKEQ  AWSSR +  MD +  +G RN  
Sbjct: 450  ILSTLAVERSVFSDWKFKEPTDISFLKRYPDIVKEQECAWSSREEQFMDNLRRFG-RNIH 508

Query: 939  TVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNN 760
             + +NS+      + G  ++   D  A   ++   S   TTMS+ETR+ LP+AL+++F  
Sbjct: 509  MMTKNSLSPNIMKNTG--AAGRVDPDANRSKEGTMSSAGTTMSSETRENLPRALLKIFQE 566

Query: 759  HKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQ--PELQTIISQIAINIH 586
             +V S+  I  GLRD+A+S S+ P+           A   A    PELQ++ISQ+A+NIH
Sbjct: 567  KRVRSINSIVSGLRDLAISSSSRPRDDPKTKALVNAAKSGADAPLPELQSVISQVAVNIH 626

Query: 585  GVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLN 406
            G+YVLK +GN  +DPLR+VVIDLFRGKE NAKLKK +  +A + +L R  ++SEY QV+N
Sbjct: 627  GLYVLKSMGNPALDPLRNVVIDLFRGKEPNAKLKKQEICKAAEFRLKRNITDSEYNQVVN 686

Query: 405  ELCVSSKGGGWMLKSGD 355
            ELCVSSK G W+L+S D
Sbjct: 687  ELCVSSK-GAWVLRSDD 702


>ref|XP_009392124.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Musa
            acuminata subsp. malaccensis]
          Length = 672

 Score =  508 bits (1307), Expect = e-140
 Identities = 293/664 (44%), Positives = 407/664 (61%), Gaps = 15/664 (2%)
 Frame = -2

Query: 2301 RFQPNA-GKLKAKPKTEPLPEPQ-------IKKQEDSRLPPNTSTLHTTTQKVEEKPSME 2146
            RFQP   GK+KA+P  +P P  Q       +KK E    P  +S        V   P ++
Sbjct: 36   RFQPRVKGKIKAEPSADPEPPRQPPPAPDPVKKHEAEGDPSASS--------VSSAPDVD 87

Query: 2145 AEMAIVPNLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYIMQYPLRACWR 1966
            A      ++D +                    I VFF P+P D +  LY+MQY LR  WR
Sbjct: 88   AVATEAMDVDEEEKEEEEEDSVVRE-------IGVFFTPAPLDEDTYLYVMQYVLRPSWR 140

Query: 1965 PYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVTGYA 1786
            PYELNERC+EVR+KP++SK+EVD  I+    N+D+  A PL  +KQTLSSS AP VT YA
Sbjct: 141  PYELNERCEEVRVKPKESKIEVDFSIDANSENYDQDAAEPLRLQKQTLSSSIAPLVTSYA 200

Query: 1785 VGFLAENKLHLNPVHAVMKLRPSLGYLN--VLQKKNNVAGSEVVACSDT--GKLVEA-TN 1621
            VG L  ++LHLNP+HAV++LRPS+ +L+  + +KK+N   +E+   +D   GKL    ++
Sbjct: 201  VGILRGDQLHLNPIHAVVQLRPSMAHLDTGLQKKKHNAQSAELSTSNDNSMGKLASVGSD 260

Query: 1620 ETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVNSLCPGTPSNISG 1441
            E ++D + WISLEYH  DS F+ ++ + +VA+  + I F +  SDYV+SLCPG  S+   
Sbjct: 261  EKIEDDEPWISLEYHAVDSHFTERYHRKMVAEAKNQIPFMMKPSDYVSSLCPGASSDNKR 320

Query: 1440 AEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVLKVLQQYAVLVRGL 1261
             +GPSRR  LTLPLEER+KKW SEG  ++RF ALMHLAPD ++ +VL  L  YAVLV+GL
Sbjct: 321  TKGPSRRLLLTLPLEERLKKWLSEGCQINRFDALMHLAPDSSKEDVLNALPLYAVLVQGL 380

Query: 1260 WVAKSSLRCANVQALARDYILLLFSASKYIQFGQLRKVKISNEILVHALTPLAVEISTLG 1081
            WV+KS+L      AL RD+IL LFS +  I   +L+ +K     L   ++ LAVE     
Sbjct: 381  WVSKSTLLYEGKVALVRDFILCLFSRNPIIHLDKLKMIKFDG--LKSLMSSLAVERRAFS 438

Query: 1080 HWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNTSTVARNSVRIGDQD 901
             WKF+E  D +FIK YP+IVK Q   WS     I   + G+ K  +  ++++S+   +  
Sbjct: 439  DWKFKEATDFSFIKKYPDIVKNQECVWSD----IEKTLPGFCK--SMPMSKSSL---NPS 489

Query: 900  DQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQLICQGL 721
               R++S   D  A   +D   S   T+MS+ET++ LPKAL+++F   ++ SL  +  GL
Sbjct: 490  SSKRVTSVKVDADAHVVKDRAVSTAVTSMSSETQEHLPKALLKIFQEKRIRSLNSVVHGL 549

Query: 720  RDMAVSKSTLPKXXXXXXXXXXXALGVASQP--ELQTIISQIAINIHGVYVLKPLGNSNI 547
            R++A+SKS  P+           A   AS P  ELQ+I+SQIA+N+HGVYVLK  GN  +
Sbjct: 550  RELAISKSFRPRDDSKIKALISAAKSGASAPASELQSIVSQIAMNVHGVYVLKSTGNPAL 609

Query: 546  DPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSKGGGWML 367
            DPLR+VVIDLFRGKE NAK+ K +   A + +L ++ S+SEY QV++ELCVSS+ G W+L
Sbjct: 610  DPLRNVVIDLFRGKEPNAKINKQEIRIAAQTRLKKDISDSEYNQVVHELCVSSR-GSWIL 668

Query: 366  KSGD 355
            KSGD
Sbjct: 669  KSGD 672


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X4
            [Vitis vinifera]
          Length = 672

 Score =  506 bits (1304), Expect = e-140
 Identities = 303/682 (44%), Positives = 405/682 (59%), Gaps = 21/682 (3%)
 Frame = -2

Query: 2325 KATSRTTGRFQPNAGKLKAKPKTEPLPEPQ---------IKKQEDSRLPPNTSTLHTTTQ 2173
            +A  R   RF P + K K  PK EP  +P+         I K+E+   PP         +
Sbjct: 11   RAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP-------LVK 63

Query: 2172 KVEEKPSMEAEMAIVP-NLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYI 1996
            K +E  +   +  ++   ++A                    EIDVFF P P D N ++Y+
Sbjct: 64   KADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVFFTPPPTDDNTKIYV 123

Query: 1995 MQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSS 1816
            +QYPLR  WRPYEL ERC EVR+KP  +++EVDL I+V   N+D         +KQTLS+
Sbjct: 124  LQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQRMKKQTLST 183

Query: 1815 S-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV--LQKKNNVAGSEVVACSDT 1645
            S + P  TGY VG L  NKLHLNP+HAV++LRPS+ YL+    ++KNNV G      +++
Sbjct: 184  SWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGD-----TNS 238

Query: 1644 GKLVEATNETVD----DAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVN 1477
               +E +NE         Q+W+ L+YH ++S FS+++ Q +VA+++S IQF +S  +YVN
Sbjct: 239  AVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVN 298

Query: 1476 SLC-PGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVL 1300
            SLC PG  ++ + ++G SRRF L++PLEER K    EGPPVHRF AL H APD++  +VL
Sbjct: 299  SLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEGPPVHRFSALKHFAPDNSVEDVL 358

Query: 1299 KVLQQYAVLVRGLWVAKSSLRC---ANVQALARDYILLLFSASKYIQFGQLRKVKISNEI 1129
             VL ++A LV+GLWV KSSL       V  LARDYILLLFS    I + Q+      N+ 
Sbjct: 359  GVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKA 418

Query: 1128 LVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKR 949
            L   L+ LAVE  +   WKF+EP D +F+K +P+IV+EQR  W S  K I D +HG G+R
Sbjct: 419  LKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRR 478

Query: 948  NTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVEL 769
                V +NS +    +  G  +       A  G  V +    T MSAETR+ALPKAL E+
Sbjct: 479  --GPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRR----TAMSAETREALPKALEEV 532

Query: 768  FNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQPELQTIISQIAINI 589
            F  HKVCS QLICQ LRD+AVSKST PK               A Q EL  IIS+ A  +
Sbjct: 533  FRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGAD-APQEELHAIISKYATTV 591

Query: 588  HGVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVL 409
            HGVYV K   +S  +PLR VV+DLF GKE NAKLK+AD +EA KI L +E +  EY +V+
Sbjct: 592  HGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVV 651

Query: 408  NELCVSSKGGGWMLKSGDGKPR 343
            +ELC  S+G  W+LKSGDGKP+
Sbjct: 652  SELC-ESRGSLWVLKSGDGKPK 672


>ref|XP_010649170.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2
            [Vitis vinifera] gi|297735187|emb|CBI17549.3| unnamed
            protein product [Vitis vinifera]
          Length = 688

 Score =  505 bits (1300), Expect = e-140
 Identities = 304/693 (43%), Positives = 406/693 (58%), Gaps = 32/693 (4%)
 Frame = -2

Query: 2325 KATSRTTGRFQPNAGKLKAKPKTEPLPEPQ---------IKKQEDSRLPPNTSTLHTTTQ 2173
            +A  R   RF P + K K  PK EP  +P+         I K+E+   PP         +
Sbjct: 11   RAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP-------LVK 63

Query: 2172 KVEEKPSMEAEMAIVP-NLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYI 1996
            K +E  +   +  ++   ++A                    EIDVFF P P D N ++Y+
Sbjct: 64   KADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVFFTPPPTDDNTKIYV 123

Query: 1995 MQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSS 1816
            +QYPLR  WRPYEL ERC EVR+KP  +++EVDL I+V   N+D         +KQTLS+
Sbjct: 124  LQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQRMKKQTLST 183

Query: 1815 S-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV--LQKKNNVAG--------- 1672
            S + P  TGY VG L  NKLHLNP+HAV++LRPS+ YL+    ++KNNV G         
Sbjct: 184  SWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGDTNSAVKLE 243

Query: 1671 -----SEVVACSDTGKLVEATNE-TVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHI 1510
                   V +     K++   +E   D A++W+ L+YH ++S FS+++ Q +VA+++S I
Sbjct: 244  VSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYHSSESDFSARYLQKMVAEDNSPI 303

Query: 1509 QFALSSSDYVNSLC-PGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMH 1333
            QF +S  +YVNSLC PG  ++ + ++G SRRF L++PLEER K    EGPPVHRF AL H
Sbjct: 304  QFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEGPPVHRFSALKH 363

Query: 1332 LAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRC---ANVQALARDYILLLFSASKYIQFG 1162
             APD++  +VL VL ++A LV+GLWV KSSL       V  LARDYILLLFS    I + 
Sbjct: 364  FAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYS 423

Query: 1161 QLRKVKISNEILVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKG 982
            Q+      N+ L   L+ LAVE  +   WKF+EP D +F+K +P+IV+EQR  W S  K 
Sbjct: 424  QVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQ 483

Query: 981  IMDRVHGYGKRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAET 802
            I D +HG G+R    V +NS +    +  G  +       A  G  V +    T MSAET
Sbjct: 484  ITDIIHGGGRR--GPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRR----TAMSAET 537

Query: 801  RDALPKALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQPEL 622
            R+ALPKAL E+F  HKVCS QLICQ LRD+AVSKST PK               A Q EL
Sbjct: 538  REALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGAD-APQEEL 596

Query: 621  QTIISQIAINIHGVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDR 442
              IIS+ A  +HGVYV K   +S  +PLR VV+DLF GKE NAKLK+AD +EA KI L +
Sbjct: 597  HAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKK 656

Query: 441  EFSNSEYMQVLNELCVSSKGGGWMLKSGDGKPR 343
            E +  EY +V++ELC  S+G  W+LKSGDGKP+
Sbjct: 657  EITTHEYNKVVSELC-ESRGSLWVLKSGDGKPK 688


>ref|XP_010649171.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X3
            [Vitis vinifera]
          Length = 677

 Score =  501 bits (1291), Expect = e-139
 Identities = 303/687 (44%), Positives = 407/687 (59%), Gaps = 26/687 (3%)
 Frame = -2

Query: 2325 KATSRTTGRFQPNAGKLKAKPKTEPLPEPQ---------IKKQEDSRLPPNTSTLHTTTQ 2173
            +A  R   RF P + K K  PK EP  +P+         I K+E+   PP         +
Sbjct: 11   RAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP-------LVK 63

Query: 2172 KVEEKPSMEAEMAIVP-NLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYI 1996
            K +E  +   +  ++   ++A                    EIDVFF P P D N ++Y+
Sbjct: 64   KADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVFFTPPPTDDNTKIYV 123

Query: 1995 MQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSS 1816
            +QYPLR  WRPYEL ERC EVR+KP  +++EVDL I+V   N+D         +KQTLS+
Sbjct: 124  LQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQRMKKQTLST 183

Query: 1815 S-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV--LQKKNNVAGSEVVACSDT 1645
            S + P  TGY VG L  NKLHLNP+HAV++LRPS+ YL+    ++KNNV G      +++
Sbjct: 184  SWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGD-----TNS 238

Query: 1644 GKLVEATNETVD----DAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVN 1477
               +E +NE         Q+W+ L+YH ++S FS+++ Q +VA+++S IQF +S  +YVN
Sbjct: 239  AVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVN 298

Query: 1476 SLC-PGTPSNISGAEGPSRRFFLTLPLEERIK-----KWFSEGPPVHRFYALMHLAPDHT 1315
            SLC PG  ++ + ++G SRRF L++PLEER K     K+  +GPPVHRF AL H APD++
Sbjct: 299  SLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEKFSLQGPPVHRFSALKHFAPDNS 358

Query: 1314 EGEVLKVLQQYAVLVRGLWVAKSSLRC---ANVQALARDYILLLFSASKYIQFGQLRKVK 1144
              +VL VL ++A LV+GLWV KSSL       V  LARDYILLLFS    I + Q+    
Sbjct: 359  VEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPG 418

Query: 1143 ISNEILVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVH 964
              N+ L   L+ LAVE  +   WKF+EP D +F+K +P+IV+EQR  W S  K I D +H
Sbjct: 419  SLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIH 478

Query: 963  GYGKRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPK 784
            G G+R    V +NS +    +  G  +       A  G  V +    T MSAETR+ALPK
Sbjct: 479  GGGRR--GPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRR----TAMSAETREALPK 532

Query: 783  ALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQPELQTIISQ 604
            AL E+F  HKVCS QLICQ LRD+AVSKST PK               A Q EL  IIS+
Sbjct: 533  ALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGAD-APQEELHAIISK 591

Query: 603  IAINIHGVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSE 424
             A  +HGVYV K   +S  +PLR VV+DLF GKE NAKLK+AD +EA KI L +E +  E
Sbjct: 592  YATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHE 651

Query: 423  YMQVLNELCVSSKGGGWMLKSGDGKPR 343
            Y +V++ELC  S+G  W+LKSGDGKP+
Sbjct: 652  YNKVVSELC-ESRGSLWVLKSGDGKPK 677


>ref|XP_010649168.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
            [Vitis vinifera] gi|731387214|ref|XP_010649169.1|
            PREDICTED: DNA-directed RNA polymerase III subunit RPC5
            isoform X1 [Vitis vinifera]
          Length = 693

 Score =  500 bits (1287), Expect = e-138
 Identities = 304/698 (43%), Positives = 408/698 (58%), Gaps = 37/698 (5%)
 Frame = -2

Query: 2325 KATSRTTGRFQPNAGKLKAKPKTEPLPEPQ---------IKKQEDSRLPPNTSTLHTTTQ 2173
            +A  R   RF P + K K  PK EP  +P+         I K+E+   PP         +
Sbjct: 11   RAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP-------LVK 63

Query: 2172 KVEEKPSMEAEMAIVP-NLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYI 1996
            K +E  +   +  ++   ++A                    EIDVFF P P D N ++Y+
Sbjct: 64   KADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDVFFTPPPTDDNTKIYV 123

Query: 1995 MQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSS 1816
            +QYPLR  WRPYEL ERC EVR+KP  +++EVDL I+V   N+D         +KQTLS+
Sbjct: 124  LQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQRMKKQTLST 183

Query: 1815 S-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV--LQKKNNVAG--------- 1672
            S + P  TGY VG L  NKLHLNP+HAV++LRPS+ YL+    ++KNNV G         
Sbjct: 184  SWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSSGGAKRKNNVTGDTNSAVKLE 243

Query: 1671 -----SEVVACSDTGKLVEATNE-TVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHI 1510
                   V +     K++   +E   D A++W+ L+YH ++S FS+++ Q +VA+++S I
Sbjct: 244  VSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYHSSESDFSARYLQKMVAEDNSPI 303

Query: 1509 QFALSSSDYVNSLC-PGTPSNISGAEGPSRRFFLTLPLEERIK-----KWFSEGPPVHRF 1348
            QF +S  +YVNSLC PG  ++ + ++G SRRF L++PLEER K     K+  +GPPVHRF
Sbjct: 304  QFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEKFSLQGPPVHRF 363

Query: 1347 YALMHLAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRC---ANVQALARDYILLLFSASK 1177
             AL H APD++  +VL VL ++A LV+GLWV KSSL       V  LARDYILLLFS   
Sbjct: 364  SALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGP 423

Query: 1176 YIQFGQLRKVKISNEILVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWS 997
             I + Q+      N+ L   L+ LAVE  +   WKF+EP D +F+K +P+IV+EQR  W 
Sbjct: 424  LINYSQVDVPGSLNKALKGFLSILAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWE 483

Query: 996  SRGKGIMDRVHGYGKRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTT 817
            S  K I D +HG G+R    V +NS +    +  G  +       A  G  V +    T 
Sbjct: 484  SLEKQITDIIHGGGRR--GPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRR----TA 537

Query: 816  MSAETRDALPKALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVA 637
            MSAETR+ALPKAL E+F  HKVCS QLICQ LRD+AVSKST PK               A
Sbjct: 538  MSAETREALPKALEEVFRLHKVCSFQLICQALRDLAVSKSTSPKVDPRTFVAAAYGAD-A 596

Query: 636  SQPELQTIISQIAINIHGVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATK 457
             Q EL  IIS+ A  +HGVYV K   +S  +PLR VV+DLF GKE NAKLK+AD +EA K
Sbjct: 597  PQEELHAIISKYATTVHGVYVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAK 656

Query: 456  IKLDREFSNSEYMQVLNELCVSSKGGGWMLKSGDGKPR 343
            I L +E +  EY +V++ELC  S+G  W+LKSGDGKP+
Sbjct: 657  IALKKEITTHEYNKVVSELC-ESRGSLWVLKSGDGKPK 693


>emb|CDP02819.1| unnamed protein product [Coffea canephora]
          Length = 687

 Score =  473 bits (1216), Expect = e-130
 Identities = 293/687 (42%), Positives = 396/687 (57%), Gaps = 34/687 (4%)
 Frame = -2

Query: 2301 RFQPNAGKLKAKPKTEPLPEPQ---IKKQE-DSR-LPPNTSTLHTTTQKVEEKPSMEAEM 2137
            RF P   K K  P+TEP+        KK+E DS+ + P  S+      K E+  S     
Sbjct: 18   RFAPKGSKFK--PRTEPVAATSNSIAKKEELDSKPVSPINSSTTAAAGKAEDAASASVSQ 75

Query: 2136 AIVPNLDA------DGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYIMQYPLRA 1975
            ++  ++DA      +   +               EIDV+  PS  D N +LY++QYPLR 
Sbjct: 76   SVAMDVDAKVEEEAEQPKDEPMESREEGEDEIVREIDVYLTPS-IDPNTKLYVLQYPLRP 134

Query: 1974 CWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSSRAPFVT 1795
             WRPYEL++RC+EVR+K + +++EVDL ++V   N+D      +   KQTL+SS  P VT
Sbjct: 135  LWRPYELDDRCEEVRVKSKSAEVEVDLAVDVDSKNYDSDADPRVSMTKQTLTSSWKPPVT 194

Query: 1794 -GYAVGFLAENKLHLNPVHAVMKLRPSLGYLNVLQKK----------NNVAGSEVVACS- 1651
             GYAVG L  NKLHLNP+HAV++LRPS+ +      K          +N  G EV   S 
Sbjct: 195  AGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSKRRTTASSNLEDNTKGEEVTTGSL 254

Query: 1650 -----DTGKLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSD 1486
                  +G ++E   +T +D   WI L YHG  S  S  + + +V  +SSHIQF+++  D
Sbjct: 255  KKQGKSSGPVIEQNKDTRED---WIPLNYHGARSDISMSYVRKMVEHDSSHIQFSMNRHD 311

Query: 1485 YVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGE 1306
            YVN+LCPGT +  +G+ GPSRR  L+LPLEER + W  +GPP+HRF AL HLAPD +  +
Sbjct: 312  YVNTLCPGTSNENNGSNGPSRRVLLSLPLEERFRTWLLQGPPIHRFDALKHLAPDASVED 371

Query: 1305 VLKVLQQYAVLVRGLWVAKSSL---RCANVQALARDYILLLFSASKYIQFGQLRKVKISN 1135
            +L VL Q+A LV+GLW+ KSSL   +   + ALARDY+LLLFS +  I   QL + +  N
Sbjct: 372  ILAVLSQHAQLVQGLWIPKSSLLYGKDQGIDALARDYVLLLFSRTPIINNSQLPQQQKLN 431

Query: 1134 EILVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYG 955
              +   L  +A E ++L  WKF+EP D  FIK   +IV+EQ   W    K I +++ G  
Sbjct: 432  RAMRDVLNTVAFERASLNDWKFKEPPDMTFIKLNSKIVREQEQTWERLEKLITEKIFGDK 491

Query: 954  KRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALV 775
             R      +NS R    ++     S    L       +   V    MS ETR+ALPKAL 
Sbjct: 492  NR---PATKNSSRPLTTNNPATSKS----LSKHASNSLNAGVPRRPMSEETREALPKALQ 544

Query: 774  ELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQP-ELQTIISQIA 598
            +LF +HKVCS Q ICQ LR+MAVS+S+ PK             GV + P ELQ IISQ+A
Sbjct: 545  KLFQSHKVCSFQQICQRLREMAVSESSRPKGFAREAIAAAH--GVEAPPEELQAIISQVA 602

Query: 597  INIHGVYVLK--PLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSE 424
            INIHGVYVLK  P+ +   D  R VVIDLF  +  NAKLKKA  IEA K++L R+ ++ E
Sbjct: 603  INIHGVYVLKSSPV-HPEHDEFRKVVIDLFIAEGPNAKLKKASMIEAAKLQLKRDINSLE 661

Query: 423  YMQVLNELCVSSKGGGWMLKSGDGKPR 343
            Y +V+ ELCV S+G  W+LKSGDG P+
Sbjct: 662  YQKVVQELCV-SQGSAWVLKSGDGNPK 687


>ref|XP_008453719.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
            [Cucumis melo]
          Length = 702

 Score =  446 bits (1148), Expect = e-122
 Identities = 284/722 (39%), Positives = 397/722 (54%), Gaps = 57/722 (7%)
 Frame = -2

Query: 2337 LSQAKATSRTTGRFQPNAGKLKAKPKTEPLPEPQIKKQEDSRLPPNTSTLHTTT------ 2176
            L +       T RF P + K K KPK+E +P+P+  +Q  ++L P               
Sbjct: 6    LDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPE-PQQPPTKLEPQPPVSKPEVVEPDAQ 64

Query: 2175 --------QKVEEKPSMEAEMAIVPN------------LDADGAANXXXXXXXXXXXXXX 2056
                    ++VE KP +E+ +   PN            ++ D   +              
Sbjct: 65   IGEKKEDGEEVEVKPKVESSL---PNGVAKMDVETKSEVEEDTMVDDDPMEEDASEDMVV 121

Query: 2055 XEIDVFFNPSPFDGNAQLYIMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGK 1876
             EIDV F PS  D N++LY++QYPLR  WRPYE   RC EVR+KP   ++E+DL +++  
Sbjct: 122  REIDVLFTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIES 180

Query: 1875 GNFDEAVAGPLGFEKQTLSSS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV 1699
             N+D         +KQTL+SS + P  T YAVG L  NKLHLNPVHAV++LRPS  +LN 
Sbjct: 181  NNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 1698 --LQKKNNVAGS---------EVVACSDTGKLVEATNETVD----DAQAWISLEYHGTDS 1564
               ++KNN+            +V +   + K  + T  + +    D + WI L+Y+G +S
Sbjct: 241  GGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLES 300

Query: 1563 PFSSKHRQNLVAKESSHIQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIK 1384
              S++H Q++V++  S +QF++S  DY++SLCPGT ++ +  +GPS+++ L+L LEERIK
Sbjct: 301  DLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERIK 360

Query: 1383 KWFSEGPPVHRFYALMHLAPDHTEGEVLKVLQQYAVLVRGLWVAKS--------SLRCAN 1228
            K  +EGPPV RF AL H APD+   E L+ LQQYA LV+GLWV KS        S RC  
Sbjct: 361  KLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRC-- 418

Query: 1227 VQALARDYILLLFSASKYIQFGQLRKVKISNEILVHALTPLAVEISTLGHWKFEEPEDNA 1048
                ARD++L LFS +  +   Q+   K   + + H L    VE      WKF+E  D++
Sbjct: 419  ----ARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHS 474

Query: 1047 FIKAYPEIVKEQRLAWSSRGKGI-MDRVHGYGKRNTSTVARNSVRIGDQD----DQGRIS 883
            F+  + +IV++Q   W++  K +   R    G   T+T  +  V    +     D+    
Sbjct: 475  FLSNHVKIVQKQEEGWNAMEKALPFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTK 534

Query: 882  SDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQLICQGLRDMAVS 703
            S  A L  +G            MS ETR+ALPKAL +LF NHKVCS QLICQGLRD+AVS
Sbjct: 535  SSNAPLNRKG-----------AMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVS 583

Query: 702  KSTLPKXXXXXXXXXXXALGVASQP-ELQTIISQIAINIHGVYVL-KPLGNSNIDPLRSV 529
            +STLPK           A GV + P EL+ IISQ+A  IHG+YVL     +   DPLR V
Sbjct: 584  QSTLPK--ADARMAVAAAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKV 641

Query: 528  VIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSKGGGWMLKSGDGK 349
            VI L RG+   A LKKAD +EA+K +L R  +++EY +V+NE+CV S G  W LKSGDG 
Sbjct: 642  VIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICV-SHGSSWTLKSGDGN 700

Query: 348  PR 343
             R
Sbjct: 701  SR 702


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
            [Cucumis sativus] gi|700198105|gb|KGN53263.1|
            hypothetical protein Csa_4G038800 [Cucumis sativus]
          Length = 702

 Score =  446 bits (1147), Expect = e-122
 Identities = 288/721 (39%), Positives = 392/721 (54%), Gaps = 56/721 (7%)
 Frame = -2

Query: 2337 LSQAKATSRTTGRFQPNAGKLKAKPKTE--PLPEPQ-----------IKKQEDSRLPPNT 2197
            L +       T RF P + K K KPK+E  P PEPQ           I K E        
Sbjct: 6    LDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVEPDARV 65

Query: 2196 STLHTTTQKVEEKPSMEAEMAIVPN------------LDADGAANXXXXXXXXXXXXXXX 2053
                   ++VE KP +E+ +   PN            ++ D   +               
Sbjct: 66   EEKKEDGEEVEVKPKVESSL---PNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMVVR 122

Query: 2052 EIDVFFNPSPFDGNAQLYIMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKG 1873
            EIDV F PS  D N++LY++QYPLR  WRPYE   RC EVR+KP   ++EVDL +++   
Sbjct: 123  EIDVLFTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIESN 181

Query: 1872 NFDEAVAGPLGFEKQTLSSS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV- 1699
            N+D    G    +KQTL+SS + P  T YAVG L  NKLHLNPVHAV++LRPS  +LN  
Sbjct: 182  NYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSG 241

Query: 1698 -LQKKNNVAGS---------EVVACSDTGKLVEATNETVD----DAQAWISLEYHGTDSP 1561
              ++KNNV            +V +   + K  + T  + +    D + WI L+Y+G +S 
Sbjct: 242  GPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLESD 301

Query: 1560 FSSKHRQNLVAKESSHIQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIKK 1381
             S++H Q++V++  S +QF++S  DY++SLCPGT ++ +  +GPS+++ L+L LEERIKK
Sbjct: 302  LSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERIKK 361

Query: 1380 WFSEGPPVHRFYALMHLAPDHTEGEVLKVLQQYAVLVRGLWVAKS--------SLRCANV 1225
              +EGPPV RF AL H APD+   E ++ LQQYA LV+GLWV KS        S RC   
Sbjct: 362  LLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRC--- 418

Query: 1224 QALARDYILLLFSASKYIQFGQLRKVKISNEILVHALTPLAVEISTLGHWKFEEPEDNAF 1045
               ARD++L LFS +  +   Q+   K   + + H L    VE      WKF+E  D  F
Sbjct: 419  ---ARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLF 475

Query: 1044 IKAYPEIVKEQRLAWSSRGKG--IMDRVHGYGKRNTSTVARNSV-RIGDQ--DDQGRISS 880
            +  +  I ++Q   W++  KG   +  +      N +T     V ++  Q   DQ    S
Sbjct: 476  LSNHVRIAEKQEELWNNVEKGFTFLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKS 535

Query: 879  DCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQLICQGLRDMAVSK 700
              A L  +G            MS ETR+ALPKAL +LF NHKVCS QLICQGLRD+AVS+
Sbjct: 536  SNAPLNRKG-----------AMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQ 584

Query: 699  STLPKXXXXXXXXXXXALGVASQP-ELQTIISQIAINIHGVYVL-KPLGNSNIDPLRSVV 526
            STLPK           A GV + P EL+ IISQ+A  IHG+YVL     +   DPLR VV
Sbjct: 585  STLPK--ADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVV 642

Query: 525  IDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSKGGGWMLKSGDGKP 346
            I L RG+   A LKKAD +EA+K +L R  +++EY +V+NE+C+ S G  W LKSGDG  
Sbjct: 643  IQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICI-SHGSSWTLKSGDGNS 701

Query: 345  R 343
            R
Sbjct: 702  R 702


>ref|XP_007046991.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
            gi|508699252|gb|EOX91148.1| SIN-like family protein,
            putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  444 bits (1142), Expect = e-121
 Identities = 279/694 (40%), Positives = 396/694 (57%), Gaps = 33/694 (4%)
 Frame = -2

Query: 2328 AKATSRTTGRFQPNAGKLKAKPKTEPLPEPQIKKQEDSRLPPNTSTLHTTTQKVEEKPSM 2149
            A  +S+   R +PN  KLK +P ++  P     K E    PP + +     ++ + KP +
Sbjct: 23   APKSSKFAPRLKPNF-KLKPEPSSKQEPLNSGPKPEPPPPPPESISRKKENEEEDIKPPV 81

Query: 2148 EAEM---------AIVPNLDADGAANXXXXXXXXXXXXXXXE-IDVFFNPSPFDGNAQLY 1999
             AE          A+   ++ +   +                 IDVFF PS  D N QLY
Sbjct: 82   IAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGNREEEDMVVREIDVFFTPS-IDANTQLY 140

Query: 1998 IMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLS 1819
            ++QYPLR CWRPYEL+ERC+EVR+KP   ++E+DL ++V   N+D   A  L   KQTLS
Sbjct: 141  VLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVDSNNYDSERASRLKMTKQTLS 200

Query: 1818 SS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYL--NVLQKKNNVAGSEVV---- 1660
            SS   P  TGYAVG L  +KLHLNP+HAV++LRPS+ +L  +V ++KN  A    V    
Sbjct: 201  SSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRKNAAAADAEVTVKV 260

Query: 1659 -----------ACSDTGKLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSH 1513
                       +     ++  +T +  DD + W+ L+YH + + FS+++ Q ++A+ES  
Sbjct: 261  EEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCR 320

Query: 1512 IQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMH 1333
            IQF +S  DYV+SLCPG  SN + A+GPSRR  L++PLEER+KK  SEGPP HRF AL H
Sbjct: 321  IQFTMSPYDYVDSLCPGA-SNNNKAQGPSRRLLLSIPLEERLKKLLSEGPPFHRFSALKH 379

Query: 1332 LAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRCAN--VQALARDYILLLFSASKYIQFGQ 1159
             APD +  ++ +VLQ++A+LV+GLWV KSSL       ++LARDY+LLLFS +  I   Q
Sbjct: 380  FAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQ 439

Query: 1158 LRKVKISNEILVHA-LTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKG 982
            +  +  S +  V   L  LA+E  +   WK +E  D  F K YP+IVK Q   W +    
Sbjct: 440  VHALSPSRKEEVKGFLKILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDN 499

Query: 981  IMDRVHGYGKRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAET 802
            +++ +    K   S     +V   ++       +  +D G R     VQ+    TMS ET
Sbjct: 500  VINHICRGAKGGPSRTKPGTVIKPEK-------AMNSDKGVRRVAPAVQA--GRTMSDET 550

Query: 801  RDALPKALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQPEL 622
            R+A+PKAL ++F  HKVCSLQLI +GLRD+A+S+STLPK               A + EL
Sbjct: 551  REAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKAAYGAD-APEHEL 609

Query: 621  QTIISQIAINIH-GVYVLKPL-GNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKL 448
            Q ++S++A+ +H G++VL+    +   DPLR VVI+L R K    KLKKAD   A  + L
Sbjct: 610  QEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVINLLRVK---GKLKKADVSAAALLSL 666

Query: 447  DREFSNSEYMQVLNELCVSSKGGGWMLKSGDGKP 346
             RE SN+EY +V+++ C   K   W+LKSGDGKP
Sbjct: 667  KREISNNEYNKVMSDFC-EYKSSWWVLKSGDGKP 699


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  439 bits (1129), Expect = e-120
 Identities = 280/662 (42%), Positives = 380/662 (57%), Gaps = 35/662 (5%)
 Frame = -2

Query: 2301 RFQPNAGKLKAKPKTEP--LPEPQIKKQEDSRLPPNTSTLHTTTQKVEEK---------P 2155
            ++ P + K K +PKT+P   P+PQ+         P  + L    +  EE+         P
Sbjct: 19   KYAPKSAKFKPQPKTKPNPKPDPQLPSSNSELQEPQNAPLSKKNEDDEEEEIKPKIISTP 78

Query: 2154 SMEA--------EMAIVPNLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLY 1999
              EA        +M I  ++D D                   EIDVFF PS  D   QLY
Sbjct: 79   KNEAWLSNNGAVKMEIDDSMDED-KREEGENEEEEEEDMIVREIDVFFTPS-IDSATQLY 136

Query: 1998 IMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLS 1819
            +MQYPLR CWRPYEL+ERC+EVR+KPQ +++EVDL I+    N+D A A    F+KQTLS
Sbjct: 137  VMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTID-DSSNWDPAQASKYNFKKQTLS 195

Query: 1818 SS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV--LQKKNNVAGSEVVACSD 1648
            +S   P VTGYAVG L  NKLHLNP+HAV++LRPSL ++N    ++KN+   +  V   D
Sbjct: 196  TSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVNSNDSKRKNSATLNPEVKLED 255

Query: 1647 T--GKLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVNS 1474
            +  GK + ++ +     Q WISL+YHG+ S FSS++ + ++A+ESS ++F ++  DY++S
Sbjct: 256  SNEGKPIGSSKK-----QCWISLKYHGSKSDFSSRYLEKMIAQESSPMEFTMTPYDYMSS 310

Query: 1473 LCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVLKV 1294
            LCP   +  + ++GP RRF L+LPL ER+KK   EGPPV RF  L H APD +  +VLKV
Sbjct: 311  LCPVASNEKTKSKGPPRRFLLSLPLAERLKKLILEGPPVQRFSVLKHFAPDDSVEDVLKV 370

Query: 1293 LQQYAVLVRGLWVAKSSLRC--ANVQALARDYILLLFSASKYIQFGQLR-KVKISNEILV 1123
            LQ+Y  LV+GLW  KSSL    AN +   RDY+LLLFS +  I   Q+   VKI  EI  
Sbjct: 371  LQEYGQLVQGLWAPKSSLLFPDANSKQGIRDYVLLLFSKNLVINSSQVNFPVKIKEEI-K 429

Query: 1122 HALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYGKRNT 943
              L   AVE  +   WKF+E  D  FIK YP+IVK+Q  AW +  K +       GK + 
Sbjct: 430  SFLNLFAVERPSFKDWKFKEHTDTTFIKLYPDIVKKQEEAWDNTEKRLSKVFDRSGKASM 489

Query: 942  ST------VARNSVR-IGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPK 784
                    +  N+V+ +  +    +I+S             ++ +  TT++ ETR+AL K
Sbjct: 490  KNAIPKPPMVHNTVKHLDSEKSMPKIASG------------MRRLTKTTITVETREALLK 537

Query: 783  ALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXALGVASQPELQTIISQ 604
            AL ++F +HKVCS QLICQGLRD+AVS+STLPK               A   ELQ IISQ
Sbjct: 538  ALPKVFQSHKVCSFQLICQGLRDLAVSQSTLPKADPRIAVAAASGAD-APPEELQEIISQ 596

Query: 603  IAINIHGVYVLKPL-GNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNS 427
            +A NIHG YVLK    +   D LR V+IDL   +  NAKLKKA+  EA ++   R+ +N 
Sbjct: 597  VATNIHGFYVLKSSPEHPQYDELRKVIIDLLLARGPNAKLKKAEVFEAARLAFKRDVTNI 656

Query: 426  EY 421
            EY
Sbjct: 657  EY 658


>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC5-like [Citrus sinensis]
            gi|557527707|gb|ESR38957.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 690

 Score =  437 bits (1123), Expect = e-119
 Identities = 273/679 (40%), Positives = 378/679 (55%), Gaps = 33/679 (4%)
 Frame = -2

Query: 2301 RFQPNAGKLKAKPKTEPLPE------PQIKKQEDS-------RLPPNTS-TLHTTTQKVE 2164
            RF P + KL  KP  EP PE      P+  K ED+        L P T  ++     K+E
Sbjct: 23   RFLPKSSKLVPKP--EPPPEKAEPQQPKKPKTEDNFQQTTSVNLTPKTEPSVSNGDVKLE 80

Query: 2163 EKPSMEAEMAIVPNLDADGAANXXXXXXXXXXXXXXXEIDVFFNPSPFDGNAQLYIMQYP 1984
             KP  E E    P  +     N               EIDVFF PS  D +++LY+MQYP
Sbjct: 81   SKPVPEPETE--PRKEEPVDLNMDELHLQDDEDMIVREIDVFFTPS-IDADSKLYVMQYP 137

Query: 1983 LRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEAVAGPLGFEKQTLSSS-RA 1807
            LR  WRPYEL+ERC+EVR+KP  S++E+DL I+V   N+D   A  L   KQTLS++   
Sbjct: 138  LRPLWRPYELDERCEEVRVKPSTSEVEMDLSIDVDSNNWDSEKASRLSMPKQTLSTTWMP 197

Query: 1806 PFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYLNV--LQKKNNVAGSEVVACSDTG--- 1642
            P  TGYA+G L  NKLHLNP+HAV++LR S+G+L     ++KNNVA    V   D+    
Sbjct: 198  PQATGYAIGVLIGNKLHLNPIHAVVQLRTSMGFLKSGGSKRKNNVASEIPVKLEDSNQDK 257

Query: 1641 ---------KLVEATNETVDDAQAWISLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSS 1489
                     K + +  +  ++ + W+ L+YHG+ S FS+++ Q ++ +E+S I F ++  
Sbjct: 258  SVGSSKKQNKRMGSIEQRSNEEECWVPLKYHGSKSDFSARYLQRMLVEENSPIHFTMNPY 317

Query: 1488 DYVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEG 1309
            DYV+SLCPG  SN + ++GPSRRF L++PLEER KK   EG PV RF  LMH AP+ T  
Sbjct: 318  DYVSSLCPGAGSNNTKSKGPSRRFLLSMPLEERFKKLLCEGEPVQRFSTLMHFAPNDTVE 377

Query: 1308 EVLKVLQQYAVLVRGLWVAKSSLRCAN--VQALARDYILLLFSASKYIQFGQLRKVKISN 1135
            +V+ VL +  +LV+GLW  +S L   N  ++ LARDY+LL FS +  ++F  L       
Sbjct: 378  DVIGVLHKNGLLVQGLWAPRSPLLFNNDKMKCLARDYVLLSFSKNSVVKFQHLSVSPKLR 437

Query: 1134 EILVHALTPLAVEISTLGHWKFEEPEDNAFIKAYPEIVKEQRLAWSSRGKGIMDRVHGYG 955
            + +   L   AVE      WKF +  D +FIK +P IV +Q   W++  K I D ++  G
Sbjct: 438  DHIKCFLNIFAVERPDFKDWKFRQQTDLSFIKEHPNIVIKQEQVWAAAEKQITDVINKLG 497

Query: 954  KRNTSTVARNSVRIGDQDDQGRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALV 775
            K  + +  RN     D      ++     + +  G     + G   +S E+R+ALPKAL 
Sbjct: 498  K--SGSTLRN-----DAGKSAMVNKHLKAINSSNGPSGALT-GNKNLSNESREALPKALQ 549

Query: 774  ELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXXXXXXXXXAL--GVASQPELQTIISQI 601
            +LF  HKVCSL LI QGLRD+A+S+STLPK            +        E   +ISQ+
Sbjct: 550  KLFQIHKVCSLPLIKQGLRDLAISQSTLPKADARMTVLAAEIVDSSFVDTQEFAEVISQV 609

Query: 600  AINIHGVYVLKPLGNSNIDPLRSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEY 421
            A NIHG YV K   +    PLR VV DL      +AKLKKAD +EA +  L RE SN+EY
Sbjct: 610  ATNIHGFYVSKSSEDPQHGPLRKVVTDLLLAGGPDAKLKKADVVEAARHVLKREISNAEY 669

Query: 420  MQVLNELCVSSKGGGWMLK 364
             +V++++C  SKG  W+LK
Sbjct: 670  SKVMSDIC-ESKGSAWILK 687


>ref|XP_012079063.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha
            curcas] gi|802640898|ref|XP_012079065.1| PREDICTED:
            DNA-directed RNA polymerase III subunit RPC5 [Jatropha
            curcas] gi|643721913|gb|KDP31792.1| hypothetical protein
            JCGZ_12253 [Jatropha curcas]
          Length = 720

 Score =  434 bits (1117), Expect = e-118
 Identities = 285/724 (39%), Positives = 398/724 (54%), Gaps = 60/724 (8%)
 Frame = -2

Query: 2337 LSQAKATSRTTGRFQPNAGKLKAKPK----TEPLPEPQIKKQED-SRLPPNTSTLHTTTQ 2173
            L   K     T +F P + K K +PK    TEP  +P++++     ++ P  +      +
Sbjct: 9    LGGPKQVPSRTSKFAPKSSKFKPQPKEKVKTEPSAKPELQESVSVPKVEPQKAFSDKKNE 68

Query: 2172 KVEE-KPSMEAEMAIVPNLDADGAANXXXXXXXXXXXXXXXE------------------ 2050
              EE KP +E      P++  +G                                     
Sbjct: 69   GEEEVKPKIETAPKTEPSVSNNGHVKMEIDGKVEVRALPKVNDPMDEDKHEEEAEGGEEE 128

Query: 2049 ---------IDVFFNPSPFDGNAQLYIMQYPLRACWRPYELNERCQEVRIKPQQSKLEVD 1897
                     IDVFF PS  D + QLY+MQYPLR CWRPYEL+E+C+EVR+KPQ ++++VD
Sbjct: 129  EEEDMIVREIDVFFTPS-IDSDTQLYVMQYPLRPCWRPYELDEKCEEVRVKPQSTEVQVD 187

Query: 1896 LEINVGKGNFDEAVAGPLGFEKQTLSSSRAPF-VTGYAVGFLAENKLHLNPVHAVMKLRP 1720
            L I+    N+D A A  L  +KQTLSSS  P   TGYAVG L  NKLHLNP+HAV++LRP
Sbjct: 188  LSIDETT-NWDPAQASKLNLKKQTLSSSFMPSCTTGYAVGVLIGNKLHLNPIHAVVQLRP 246

Query: 1719 SLGYLNVLQ-KKNNVAGSEV-----VACSDTGKLV----------EATNETVDDAQ-AWI 1591
            SL ++N    K+ N+A   +     +  S  GK +          E  N+ + DA+ +WI
Sbjct: 247  SLEHVNSNDLKRRNIASFNIDPTVKIGDSSEGKPIGPSKKQIKRTEVANDQISDAEKSWI 306

Query: 1590 SLEYHGTDSPFSSKHRQNLVAKESSHIQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFL 1411
            SL+YHG+ S FSS + Q ++A+E S ++F +S  DY++SLCP   SN + ++GPSRRF L
Sbjct: 307  SLKYHGSKSDFSSSYLQKMMAEEGSPMEFTMSPYDYMSSLCP-VASNNAKSKGPSRRFLL 365

Query: 1410 TLPLEERIKKWFSEGPPVHRFYALMHLAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRCA 1231
            +LPLEER+KK   EGPPV RF  L H AP+ T  +VL V+Q++  LV+GLW  +++L   
Sbjct: 366  SLPLEERMKKLLIEGPPVQRFSVLKHFAPEDTVEDVLTVVQKHGQLVQGLWAPRTALLFP 425

Query: 1230 NVQAL----ARDYILLLFSASKYIQFGQLRKVKISNEILVHA-LTPLAVEISTLGHWKFE 1066
            + + +    ARDYILLLFS S  I   Q+  +    +  V A L   AVE  +   WKF+
Sbjct: 426  DSKEVYKPPARDYILLLFSKSLVISTSQITSLPARLKEPVRAFLNLFAVERPSFRDWKFK 485

Query: 1065 EPEDNAFIKAYPEIVKEQRLAWSSRGK---GIMDRVHGYGKRNTSTVARNSVRIGDQDDQ 895
            E  D AF+K +PE+VK+Q + W    K   G +      GK+N       +  +  + D 
Sbjct: 486  ESPDAAFMKLHPEVVKKQVVIWEGVEKKLTGFLSSSSKGGKQNDKRQPTLAHNLTKELDP 545

Query: 894  GRISSDCADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQLICQGLRD 715
             +I+   A         V +    TT+++E+R+AL K L ++   HKVCS +LI QGLRD
Sbjct: 546  HKIAPKSA--------SVNRVPIRTTITSESREALLKVLPKVLQTHKVCSFELIRQGLRD 597

Query: 714  MAVSKSTLPKXXXXXXXXXXXALGVASQPELQTIISQIAINIHGVYVLKPL-GNSNIDPL 538
            +AVS+STLPK               A   ELQ IIS++A NIHG YVLK    +   D L
Sbjct: 598  LAVSQSTLPKADPRIAKLAADGAD-APLEELQEIISEVATNIHGSYVLKSSPDHPQYDVL 656

Query: 537  RSVVIDLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSKGGGWMLKSG 358
            R VVIDL   +  NAKLKK++  EA K+ L R+ + +EY +V+ + C  SK   W+LKSG
Sbjct: 657  RKVVIDLLLARGPNAKLKKSEVYEAAKLVLKRDINTTEYTKVMTDFC-ESKASAWVLKSG 715

Query: 357  DGKP 346
            DGKP
Sbjct: 716  DGKP 719


>ref|XP_012491679.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1
            [Gossypium raimondii] gi|763776418|gb|KJB43541.1|
            hypothetical protein B456_007G205200 [Gossypium
            raimondii] gi|763776419|gb|KJB43542.1| hypothetical
            protein B456_007G205200 [Gossypium raimondii]
          Length = 703

 Score =  432 bits (1110), Expect = e-118
 Identities = 280/711 (39%), Positives = 403/711 (56%), Gaps = 50/711 (7%)
 Frame = -2

Query: 2328 AKATSRTTGRFQPNAGKL--KAKPKTEPLPEPQIKKQ-EDSRLPPNTSTLHTTTQKVEE- 2161
            ++A +RTT +F P + K   K K  ++P PEP  K++ +DS   P    +   ++K E  
Sbjct: 13   SQANTRTT-KFAPKSSKFAPKLKSTSKPKPEPSSKQEPQDSAPKPQPPPVEAVSKKKEND 71

Query: 2160 ----KPSMEAEM---------AIVPNLDADGAANXXXXXXXXXXXXXXXE------IDVF 2038
                KP M AE          A+   +D +   +               E      IDVF
Sbjct: 72   EEDVKPPMVAEPKAEQSISNGAVKMEIDEETKEDEILTEANREEDQGEEEDMVVREIDVF 131

Query: 2037 FNPSPFDGNAQLYIMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINVGKGNFDEA 1858
            F PS  D +AQLY++QYPLR CWRPYEL+ERC+EVR+KP   ++E+D+ ++V   N+D  
Sbjct: 132  FTPS-IDADAQLYVLQYPLRPCWRPYELDERCKEVRVKPDSWEVEIDMSVDVDSNNYDSE 190

Query: 1857 VAGPLGFEKQTLSSS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYL--NVLQKK 1687
             A  L   KQTLSSS   P  +GYAVG L  +KLHLNP+HAV++LRPSL +L   V ++K
Sbjct: 191  SANKLKMTKQTLSSSWLPPRPSGYAVGVLMGDKLHLNPIHAVVQLRPSLAHLKSGVSKRK 250

Query: 1686 NNVAGSEVV--------------ACSDTGKLVEATNETVDDAQAWISLEYHGTDSPFSSK 1549
            + VA    V              +     K+  +T +  +D + W+ L+YH + S FS++
Sbjct: 251  DTVAAEAEVTVKVEPNDGKAAGPSAKQNQKVQSSTEQKAEDKECWVPLKYHSSKSDFSAQ 310

Query: 1548 HRQNLVAKESSHIQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFLTLPLEERIKKWFSE 1369
            + Q ++A++SS I+F L+  DYV+SLCP  PSN + A+  SRR   ++PLE+R+KK  +E
Sbjct: 311  YLQKMMAEQSSPIEFTLNPYDYVDSLCP-LPSNNNKAQRLSRRLLCSIPLEDRLKKLLTE 369

Query: 1368 GPPVHRFYAL-MHLAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRCAN--VQALARDYIL 1198
            G P H F  L  H APD    EV +VLQ++A+LV+GLWV KSSL       ++LARDY+L
Sbjct: 370  GRPFHHFNTLKRHYAPDDPIEEVFEVLQKHALLVQGLWVPKSSLLFPGDPSKSLARDYVL 429

Query: 1197 LLFSASKYIQFGQLRKVKISNEILVHA-LTPLAVEISTLGHWKFEEPEDNAFIKAYPEIV 1021
            LLFS + +I + ++  +  S +  V   L  LA+E   L  WK +E  D  F K YP+IV
Sbjct: 430  LLFSKNPFISYDKVNNLSTSRKEEVKGFLKILAIESPPLKGWKLKENTDENFKKEYPDIV 489

Query: 1020 KEQRLAWSSRGKGIMDRV----HGYGKRNTSTVARNSVRIGDQDDQGRISSDCADLGARG 853
            K+Q   W +    + + +     G   R        S + G+ D   R  +     GA  
Sbjct: 490  KKQEQIWKAGEDNVTNHIWRGAKGGPSRTKPGTVIKSEKAGNSDKVARKVAP----GAHA 545

Query: 852  GQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQLICQGLRDMAVSKSTLPKXXXX 673
            G+         TMS ETR+A+PKAL ++F  +KVCSLQLI +GLRD+A+S+STLPK    
Sbjct: 546  GR---------TMSDETREAIPKALKKVFQTYKVCSLQLIRKGLRDLALSQSTLPKADAR 596

Query: 672  XXXXXXXALGVASQPELQTIISQIAINIH-GVYVLK-PLGNSNIDPLRSVVIDLFRGKER 499
                       A + ELQ ++SQ+A+ +H G++V+K    N   DPLR VVI+L R K+ 
Sbjct: 597  LVVKAAYGAD-APEHELQDVVSQVAVELHGGLFVMKSSQENPECDPLREVVINLLRVKD- 654

Query: 498  NAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSKGGGWMLKSGDGKP 346
              KLKKA+   A ++ L R+ +N+EY +V+++ C   KG  W+LKSGDGKP
Sbjct: 655  --KLKKAEVTAAAQVSLKRDITNNEYNKVMSDFC-EYKGNWWVLKSGDGKP 702


>gb|KHG05676.1| DNA-directed RNA polymerase III subunit RPC5 [Gossypium arboreum]
          Length = 710

 Score =  431 bits (1109), Expect = e-117
 Identities = 281/719 (39%), Positives = 405/719 (56%), Gaps = 56/719 (7%)
 Frame = -2

Query: 2334 SQAKATSRTT------GRFQPNAGKL--KAKPKTEPLPEPQIKKQ-EDSR---LPPNTST 2191
            S ++A +RTT       +F P + K   K KP ++P PEP  K++ +DS     PP    
Sbjct: 11   SSSQANTRTTKFAPKSSKFAPKSSKFAPKLKPTSKPKPEPSSKQEPQDSAPKLQPPPVEA 70

Query: 2190 LHTTTQKVEE--KPSMEAEM---------AIVPNLDADGAANXXXXXXXXXXXXXXXE-- 2050
            +    +  EE  KP M AE          A+   +D D   +               E  
Sbjct: 71   VSKKKENDEEDVKPPMVAEPKAEQSISNGAVKMEIDEDTKEDEILTEANREEDQGEEEDM 130

Query: 2049 ----IDVFFNPSPFDGNAQLYIMQYPLRACWRPYELNERCQEVRIKPQQSKLEVDLEINV 1882
                IDVFF PS  D +AQLY++QYPLR CWRPYEL+ERC+EVR+KP   ++E+D+ +++
Sbjct: 131  VVREIDVFFTPS-IDADAQLYVLQYPLRPCWRPYELDERCKEVRVKPDSGEVEIDMSVDI 189

Query: 1881 GKGNFDEAVAGPLGFEKQTLSSS-RAPFVTGYAVGFLAENKLHLNPVHAVMKLRPSLGYL 1705
               N+D   A  L   KQTLSSS   P  +GYAVG L  +KLHLNP+HAV++LRPSL +L
Sbjct: 190  DSNNYDSESANKLKMTKQTLSSSWLPPRPSGYAVGVLMGDKLHLNPIHAVVQLRPSLAHL 249

Query: 1704 --NVLQKKNNVAGSEVV--------------ACSDTGKLVEATNETVDDAQAWISLEYHG 1573
               V ++K+ VA    V              +     K+  +T +  +D + W+ L+YH 
Sbjct: 250  KSGVSKRKDTVAAEAEVTVKVEPNDGKAAGPSAKQNQKVQSSTEQKAEDKECWVPLKYHS 309

Query: 1572 TDSPFSSKHRQNLVAKESSHIQFALSSSDYVNSLCPGTPSNISGAEGPSRRFFLTLPLEE 1393
            + S FS+++ Q ++A++SS I+F L+  DYV+SLCP  PSN S ++  SRR   ++PLE+
Sbjct: 310  SKSDFSAQYLQKMMAEQSSPIEFTLNPYDYVDSLCP-LPSNNSKSQRLSRRLLCSIPLED 368

Query: 1392 RIKKWFSEGPPVHRFYAL-MHLAPDHTEGEVLKVLQQYAVLVRGLWVAKSSLRCAN--VQ 1222
            R+KK  +EG P H F  L  H AP+    EV +VLQ++A+LV+GLWV KSSL       +
Sbjct: 369  RLKKLLTEGRPFHHFNTLKRHYAPNDPIEEVFEVLQKHALLVQGLWVPKSSLLFPGDPSK 428

Query: 1221 ALARDYILLLFSASKYIQFGQLRKVKISNEILVHA-LTPLAVEISTLGHWKFEEPEDNAF 1045
            +LARD++LLLFS + +I + ++  +  S +  V   L  LA+E   L  WK +E  D  F
Sbjct: 429  SLARDFVLLLFSKNPFISYDKVNNLSTSRKEEVKGFLKILAIESPPLKGWKLKENTDENF 488

Query: 1044 IKAYPEIVKEQRLAWSSRGKGIMDRV----HGYGKRNTSTVARNSVRIGDQDDQGRISSD 877
             K YPEIVK+Q   W +    + + +     G   R        S + G+ D   R  + 
Sbjct: 489  KKEYPEIVKKQEQIWKAGEDNVTNHIWRGAKGGPSRTKPGTVIKSEKAGNSDKVARKVAP 548

Query: 876  CADLGARGGQDVVQSVGTTTMSAETRDALPKALVELFNNHKVCSLQLICQGLRDMAVSKS 697
                GA  G+         TMS ETR+A+PKA+ ++F  +KVCSLQLI +GLRD+A+S+S
Sbjct: 549  ----GAHAGR---------TMSDETREAIPKAMKKVFQTYKVCSLQLIRKGLRDLALSQS 595

Query: 696  TLPKXXXXXXXXXXXALGVASQPELQTIISQIAINIH-GVYVLK-PLGNSNIDPLRSVVI 523
            TLPK               A + ELQ ++SQ+A+ +H G++V+K    N   DPLR VVI
Sbjct: 596  TLPKADARLVVKAAYGAD-APEHELQDVVSQVAVELHGGLFVMKSSQENPECDPLREVVI 654

Query: 522  DLFRGKERNAKLKKADFIEATKIKLDREFSNSEYMQVLNELCVSSKGGGWMLKSGDGKP 346
            +L R K+   KLKKA+   A ++ L R+ +N+EY +V+++ C   KG  W+LKSGDGKP
Sbjct: 655  NLLRVKD---KLKKAEVTAAAQVSLKRDITNNEYNKVMSDFC-EYKGNWWVLKSGDGKP 709