BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00013559
         (2664 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chro...   372   e-100
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr...   349   8e-93
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec...   346   6e-92
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec...   344   2e-91
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr...   343   3e-91
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec...   341   2e-90
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec...   341   2e-90
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr...   337   4e-89
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr...   333   3e-88
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia...   333   3e-88
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr...   333   3e-88
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr...   333   3e-88
ref|XP_010100330.1| Cleavage and polyadenylation specificity fac...   327   3e-86
ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation spec...   325   2e-85
ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Mal...   321   2e-84
ref|XP_012085540.1| PREDICTED: cleavage and polyadenylation spec...   321   2e-84
ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation spec...   321   2e-84
ref|XP_011042356.1| PREDICTED: cleavage and polyadenylation spec...   317   3e-83
ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation spec...   316   5e-83
gb|KHG22501.1| Cleavage and polyadenylation specificity factor s...   316   5e-83

>ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Nelumbo
            nucifera]
          Length = 599

 Score =  372 bits (955), Expect = e-100
 Identities = 194/330 (58%), Positives = 228/330 (69%), Gaps = 2/330 (0%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AI ALA+EE+MGEDDEYDDLYNDVNVG+GF +    R E  VP            +    
Sbjct: 29   AISALAEEEMMGEDDEYDDLYNDVNVGDGFLKL--QRPEAIVPLGGIGNGGIQAQKTDGS 86

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV 2305
            R  SRVP+    QEV+IP V ++ K  N+   FS  EQK+  FS+  G  EG G+Y DGV
Sbjct: 87   R--SRVPEPGGSQEVSIPGVGLEGKGSNMVTGFS--EQKKGGFSAGNGLEEGTGDYPDGV 142

Query: 2304 SQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRNGH 2125
            SQK   ++M    Q  N+GFRGS P PPK+G DP Q  GKF G  SSLPD G  GP +  
Sbjct: 143  SQKGRPLEMGPNAQGGNLGFRGSAPIPPKVGADPSQXSGKFAGESSSLPDSGTAGPXSAP 202

Query: 2124 LMVVNPTGTVAN--QPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKE 1951
             M  N      N  +P+ N+N +R  +E+G TMLFVGELHWWTTDA+LE +LSQYGRVKE
Sbjct: 203  QMPSNRMNMNVNMNRPMXNENMNRXAVENGTTMLFVGELHWWTTDAELEXVLSQYGRVKE 262

Query: 1950 IKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAY 1771
            IKF+DERASGKSKGYCQVEFYD +AA ACKEGM GH+FNGRACVVAFAS QT++QMG+AY
Sbjct: 263  IKFFDERASGKSKGYCQVEFYDPAAAAACKEGMXGHVFNGRACVVAFASXQTLKQMGAAY 322

Query: 1770 MNKNQAQGQPQVPGRRPMNDGVGRGGGSNY 1681
            +NK Q Q Q Q  GRR MNDGVGRGGG N+
Sbjct: 323  LNKTQMQSQSQPQGRRFMNDGVGRGGGMNH 352



 Score =  133 bits (334), Expect = 9e-28
 Identities = 80/155 (51%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
 Frame = -1

Query: 1227 NSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGETGHER--GRSN-VSREK 1057
            ++GMW DTSMAGW   AG++HGRRT ESSYGGDD  SDYGYGE GHER  GRSN  +REK
Sbjct: 448  HAGMWTDTSMAGW---AGEDHGRRTGESSYGGDDGXSDYGYGEAGHERGGGRSNAATREK 504

Query: 1056 DRGSE-XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRDHXXXXXXXXXXXXXXRGQ 880
            DRG E                          RY+EEKD +R H              RGQ
Sbjct: 505  DRGXERDWSGNSERRHRDERDQDWDRSDREHRYKEEKDAYRXHRQRERDWDNEDDWDRGQ 564

Query: 879  XXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
                     RM+QE+++RSRSR+ADYGKRRRLPSE
Sbjct: 565  NSSRSXSKSRMMQEEEYRSRSRBADYGKRRRLPSE 599


>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
            gi|557540375|gb|ESR51419.1| hypothetical protein
            CICLE_v10030915mg [Citrus clementina]
          Length = 658

 Score =  349 bits (895), Expect = 8e-93
 Identities = 184/334 (55%), Positives = 223/334 (66%), Gaps = 4/334 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEELMGEDDEYDDLYNDVNVG+G  Q     ++   P             K  D
Sbjct: 29   AIPALADEELMGEDDEYDDLYNDVNVGDGLLQF----QQPEAPPPSAGVGNGRLQVKKTD 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  +V      Q   +P V+++ K  N G +F      + + +       G GNY DG 
Sbjct: 85   VPEQQV-QAGVSQGSNVPGVSVEGKYTNAGTHFPAQNDVQVAVNRPN---MGSGNYPDGA 140

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             VSQK +V +      V N+GF+GS   PP+ G DP  MPG+    P+ + +PGA GP+ 
Sbjct: 141  SVSQKGSVQETTHDAHVRNMGFQGSTSGPPRTGVDPSNMPGRVANEPAPVLNPGAAGPQ- 199

Query: 2130 GHLMVVNPTGTV--ANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
            G L+  N  G     N+ +VN+N  RP LE+G TMLFVGELHWWTTDA+LES+LSQYGRV
Sbjct: 200  GALIPANQMGVNINVNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRV 259

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEF+D++AA ACK+GMNGH+FNGR CVVAFASPQT++QMG+
Sbjct: 260  KEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGA 319

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            +YMNKNQ Q Q Q  GRRPMNDG GRGG  NYQS
Sbjct: 320  SYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQS 353



 Score =  175 bits (443), Expect = 2e-40
 Identities = 106/234 (45%), Positives = 119/234 (50%), Gaps = 6/234 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ+MMG  FDPTYM               GM+PSFP +N + L GVAPHVNPAFF   
Sbjct: 429  MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 487

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G + GMW D+SM GW    G+EHGRRTRESSYGGDD  SDYGYGE
Sbjct: 488  MAANGMGMMGSSGMDGPHPGMWTDSSMGGW---VGEEHGRRTRESSYGGDDGASDYGYGE 544

Query: 1098 TGHERGRSNV--SREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHR 937
              HE+G  +   SREKDRGSE                              +REEKD +R
Sbjct: 545  ANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 604

Query: 936  DHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            D               RG          R I ++DHRSRSRD DYGKRRRLPSE
Sbjct: 605  DRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIPDEDHRSRSRDVDYGKRRRLPSE 658


>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185-like isoform X1 [Citrus sinensis]
          Length = 658

 Score =  346 bits (887), Expect = 6e-92
 Identities = 183/334 (54%), Positives = 222/334 (66%), Gaps = 4/334 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEELMGEDDEYDDLYNDVNVG+G  Q     ++   P             K  D
Sbjct: 29   AIPALADEELMGEDDEYDDLYNDVNVGDGLLQF----QQPEAPPPSAGVGNGRLQVKKTD 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  +V      Q   +P V+++ K  N G +F      + + +       G GNY DG 
Sbjct: 85   VPEQQV-QAGVSQGSNVPGVSVEGKYTNAGTHFPAQNDVQVAVNRPN---MGSGNYPDGA 140

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             VSQK +V +      V N+GF+GS   P + G DP  MPG+    P+ + +PGA GP+ 
Sbjct: 141  SVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSNMPGRVANEPAPVLNPGAAGPQ- 199

Query: 2130 GHLMVVNPTGTV--ANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
            G L+  N  G     N+ +VN+N  RP LE+G TMLFVGELHWWTTDA+LES+LSQYGRV
Sbjct: 200  GALIPANQMGVNINVNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRV 259

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEF+D++AA ACK+GMNGH+FNGR CVVAFASPQT++QMG+
Sbjct: 260  KEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGA 319

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            +YMNKNQ Q Q Q  GRRPMNDG GRGG  NYQS
Sbjct: 320  SYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQS 353



 Score =  174 bits (442), Expect = 3e-40
 Identities = 106/234 (45%), Positives = 119/234 (50%), Gaps = 6/234 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ+MMG  FDPTYM               GM+PSFP +N + L GVAPHVNPAFF   
Sbjct: 429  MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 487

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G + GMW D+SM GW    G+EHGRRTRESSYGGDD  SDYGYGE
Sbjct: 488  MAANGMGMMGSSGMDGPHPGMWTDSSMGGW---LGEEHGRRTRESSYGGDDGASDYGYGE 544

Query: 1098 TGHERGRSNV--SREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHR 937
              HE+G  +   SREKDRGSE                              +REEKD +R
Sbjct: 545  ANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 604

Query: 936  DHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            D               RG          R I ++DHRSRSRD DYGKRRRLPSE
Sbjct: 605  DRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIPDEDHRSRSRDVDYGKRRRLPSE 658


>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185-like isoform X1 [Citrus sinensis]
          Length = 655

 Score =  344 bits (883), Expect = 2e-91
 Identities = 184/334 (55%), Positives = 223/334 (66%), Gaps = 4/334 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEELMGEDDEYDDLYNDVNVG+G  Q     ++   P             K  D
Sbjct: 26   AIPALADEELMGEDDEYDDLYNDVNVGDGLLQF----QQPEAPPPSAGVGNGRLQVKKTD 81

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  RV      Q   IP V+++ K  N G++F      + + +       G GNY DG 
Sbjct: 82   VPEQRV-QVGGSQGSNIPGVSVEGKYTNAGSHFPAQNDVQVAVNRPN---MGSGNYPDGA 137

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             VSQK +V +      V N+GF+GS   P + G DP  MPG+    P+ + +PGA GP+ 
Sbjct: 138  SVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSNMPGRVANEPAPVLNPGAAGPQ- 196

Query: 2130 GHLMVVNPTGTVAN--QPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
            G L+  N  G  AN  + +VN+N  RP LE+G TMLFVGELHWWTTDA+LES+LSQYGR 
Sbjct: 197  GALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRA 256

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEF+D++AA ACK+GMNGH+FNGR CVVAFASPQT++QMG+
Sbjct: 257  KEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGA 316

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            +YMNKNQ Q Q Q  G RPMNDG GRGG +NYQS
Sbjct: 317  SYMNKNQGQPQSQNQGSRPMNDGGGRGGNTNYQS 350



 Score =  177 bits (448), Expect = 5e-41
 Identities = 106/234 (45%), Positives = 119/234 (50%), Gaps = 6/234 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ+MMG  FDPTYM               GM+PSFP +N + L GVAPHVNPAFF   
Sbjct: 426  MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 484

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G + GMW D+SM GW    G+EHGRRTRESSYGGDD  SDYGYGE
Sbjct: 485  MAANGMGMMGSSGMDGPHPGMWTDSSMGGW---LGEEHGRRTRESSYGGDDGASDYGYGE 541

Query: 1098 TGHERGRSNV--SREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHR 937
              HE+G  +   SREKDRGSE                              +REEKD +R
Sbjct: 542  ANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 601

Query: 936  DHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            D               RGQ           I ++DHRSRSRD DYGKRRRLPSE
Sbjct: 602  DRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIPDEDHRSRSRDVDYGKRRRLPSE 655


>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
            gi|567891321|ref|XP_006438181.1| hypothetical protein
            CICLE_v10030917mg [Citrus clementina]
            gi|557540376|gb|ESR51420.1| hypothetical protein
            CICLE_v10030917mg [Citrus clementina]
            gi|557540377|gb|ESR51421.1| hypothetical protein
            CICLE_v10030917mg [Citrus clementina]
          Length = 655

 Score =  343 bits (881), Expect = 3e-91
 Identities = 183/334 (54%), Positives = 223/334 (66%), Gaps = 4/334 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEELMGEDDEYDDLYND+NVG+G  Q     ++   P             K  D
Sbjct: 26   AIPALADEELMGEDDEYDDLYNDINVGDGLLQF----QQPEAPPPSAGVGNGRLQVKKTD 81

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  RV      Q   IP V+++ K  N G++F      + + +       G GNY DG 
Sbjct: 82   VPEQRV-QVGGSQGSNIPGVSVEGKYTNAGSDFPAQNDVQVAVNRPN---MGSGNYPDGA 137

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             VSQK +V +      V N+GF+GS   P + G DP  MPG+    P+ + +PGA GP+ 
Sbjct: 138  SVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSNMPGRAANEPAPVLNPGAAGPQ- 196

Query: 2130 GHLMVVNPTGTVAN--QPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
            G L+  N  G  AN  + +VN+N  RP LE+G TMLFVGELHWWTTDA+LES+LSQYGR 
Sbjct: 197  GALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRA 256

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEF+D++AA ACK+GMNGH+FNGR CVVAFASPQT++QMG+
Sbjct: 257  KEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGA 316

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            +YMNKNQ Q Q Q  G RPMNDG GRGG +NYQS
Sbjct: 317  SYMNKNQGQPQSQNQGSRPMNDGGGRGGNTNYQS 350



 Score =  177 bits (450), Expect = 3e-41
 Identities = 106/234 (45%), Positives = 119/234 (50%), Gaps = 6/234 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ+MMG  FDPTYM               GM+PSFP +N + L GVAPHVNPAFF   
Sbjct: 426  MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 484

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G + GMW D+SM GW    G+EHGRRTRESSYGGDD  SDYGYGE
Sbjct: 485  MAANGMGMMGSSGMDGPHPGMWTDSSMGGW---VGEEHGRRTRESSYGGDDGASDYGYGE 541

Query: 1098 TGHERGR--SNVSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHR 937
              HE+G   +  SREKDRGSE                              +REEKD +R
Sbjct: 542  ASHEKGARSTTASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 601

Query: 936  DHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            D               RGQ           I ++DHRSRSRD DYGKRRRLPSE
Sbjct: 602  DRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIPDEDHRSRSRDVDYGKRRRLPSE 655


>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185 isoform X2 [Vitis vinifera]
            gi|731372808|ref|XP_010650883.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit CG7185 isoform
            X2 [Vitis vinifera] gi|731372811|ref|XP_010650886.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit CG7185 isoform X2 [Vitis vinifera]
          Length = 650

 Score =  341 bits (875), Expect = 2e-90
 Identities = 185/333 (55%), Positives = 226/333 (67%), Gaps = 4/333 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AI ALAD+ELMGEDDEYDDLYNDVNVGEGF Q   HR E   P            +   D
Sbjct: 29   AISALADDELMGEDDEYDDLYNDVNVGEGFLQM--HRSEAPAPSGVMAGGPFQAHKT--D 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  ++ +  T Q + IP V+++ K  N      +  +K+    + KG   G  ++ DG 
Sbjct: 85   VPPQKL-EAGTSQGLIIPGVSIEGKYSN-----PHFHEKKEGPMAVKGPEMGSTSHLDGP 138

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             VSQK  V++M    QV N+GF+GS P P K G +P  + GK     + + + G  GPR 
Sbjct: 139  SVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRA 198

Query: 2130 GHLMVVNPTG--TVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
               M+ N  G     N+P+VN+N  RP +++G TMLFVGELHWWTTDA+LES+LSQYGRV
Sbjct: 199  VPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRV 258

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEFYD+SAA ACKEGMNG++FNGRACVVAFASPQT++QMG+
Sbjct: 259  KEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGA 318

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQ 1678
            +YMNK QAQ Q Q  GRRPMNDGVGRGGG N Q
Sbjct: 319  SYMNKTQAQSQSQ--GRRPMNDGVGRGGGMNMQ 349



 Score =  200 bits (509), Expect = 4e-48
 Identities = 116/231 (50%), Positives = 129/231 (55%), Gaps = 3/231 (1%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMG+ FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 423  MHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRG 482

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           GH++GMW DTSM GWGG   +EHGRRTRESSYGGDD  SDYGYGE
Sbjct: 483  MAANGMGMMGATGMDGHHAGMWTDTSMGGWGG---EEHGRRTRESSYGGDDGASDYGYGE 539

Query: 1098 TGHER-GRSN-VSREKDRGSE-XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRDHX 928
              HE+ GRSN  SREK+RGSE                          RYREEKDG+RDH 
Sbjct: 540  VNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRDHR 599

Query: 927  XXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
                         RGQ         R + ++DHRSRSRD DYGKRRRLPSE
Sbjct: 600  QRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE 650


>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
            isoform X1 [Vitis vinifera]
          Length = 656

 Score =  341 bits (875), Expect = 2e-90
 Identities = 185/333 (55%), Positives = 226/333 (67%), Gaps = 4/333 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AI ALAD+ELMGEDDEYDDLYNDVNVGEGF Q   HR E   P            +   D
Sbjct: 35   AISALADDELMGEDDEYDDLYNDVNVGEGFLQM--HRSEAPAPSGVMAGGPFQAHKT--D 90

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  ++ +  T Q + IP V+++ K  N      +  +K+    + KG   G  ++ DG 
Sbjct: 91   VPPQKL-EAGTSQGLIIPGVSIEGKYSN-----PHFHEKKEGPMAVKGPEMGSTSHLDGP 144

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             VSQK  V++M    QV N+GF+GS P P K G +P  + GK     + + + G  GPR 
Sbjct: 145  SVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRA 204

Query: 2130 GHLMVVNPTG--TVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
               M+ N  G     N+P+VN+N  RP +++G TMLFVGELHWWTTDA+LES+LSQYGRV
Sbjct: 205  VPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRV 264

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEFYD+SAA ACKEGMNG++FNGRACVVAFASPQT++QMG+
Sbjct: 265  KEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGA 324

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQ 1678
            +YMNK QAQ Q Q  GRRPMNDGVGRGGG N Q
Sbjct: 325  SYMNKTQAQSQSQ--GRRPMNDGVGRGGGMNMQ 355



 Score =  200 bits (509), Expect = 4e-48
 Identities = 116/231 (50%), Positives = 129/231 (55%), Gaps = 3/231 (1%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMG+ FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 429  MHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRG 488

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           GH++GMW DTSM GWGG   +EHGRRTRESSYGGDD  SDYGYGE
Sbjct: 489  MAANGMGMMGATGMDGHHAGMWTDTSMGGWGG---EEHGRRTRESSYGGDDGASDYGYGE 545

Query: 1098 TGHER-GRSN-VSREKDRGSE-XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRDHX 928
              HE+ GRSN  SREK+RGSE                          RYREEKDG+RDH 
Sbjct: 546  VNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRDHR 605

Query: 927  XXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
                         RGQ         R + ++DHRSRSRD DYGKRRRLPSE
Sbjct: 606  QRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE 656


>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|590695488|ref|XP_007044903.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|508708837|gb|EOY00734.1| RNA-binding family protein
            isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
            RNA-binding family protein isoform 1 [Theobroma cacao]
          Length = 653

 Score =  337 bits (863), Expect = 4e-89
 Identities = 177/330 (53%), Positives = 218/330 (66%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEE+MGEDDEYDDLYNDVNVGEGF Q     +    P             + ++
Sbjct: 29   AIPALADEEMMGEDDEYDDLYNDVNVGEGFLQL----QRSEAPPQPGGMGSTGLQAQKNE 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV 2305
             P  R  +    Q + IP V++  K LNV A +   EQ      S    G G       +
Sbjct: 85   APEPR-GEAGGSQGLNIPGVSVQGKHLNVTARYP--EQDGQPAVSRPEMGSGSYPSGTSI 141

Query: 2304 SQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRNGH 2125
            SQK  V++  +  QV+N+GF+G   A  K+G DP  +P K    P+   + G  GP+   
Sbjct: 142  SQKGRVMEGTQDTQVKNMGFQGLSSASHKVGIDPSGVPQKIANVPAQSLNSGTGGPQGAP 201

Query: 2124 LMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKEIK 1945
             +  N  G   N P++++N  RP +E+GPTMLFVGELHWWTTDA+LES+LSQYGRVKEIK
Sbjct: 202  HVPPNQMGLNVNHPMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIK 261

Query: 1944 FYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAYMN 1765
            F+DERASGKSKGYCQVEFYD ++A ACKEGM+G+MFNGRACVVAFASPQT++QMG++YMN
Sbjct: 262  FFDERASGKSKGYCQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMN 321

Query: 1764 KNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            KNQ Q Q Q  GRRP NDG+GRGG  NYQS
Sbjct: 322  KNQGQSQAQPQGRRP-NDGLGRGGNMNYQS 350



 Score =  182 bits (462), Expect = 1e-42
 Identities = 106/233 (45%), Positives = 121/233 (51%), Gaps = 5/233 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 424  MHPQGMMGAGFDPTYMGRGGSYGGFPGPGFPGMLPSFPAVNTLGLAGVAPHVNPAFFGRG 483

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G + GMW DTSM GWGG   DEHGRRTRESSYGG+D  S+YGYG+
Sbjct: 484  MAPNGMGMMGGPGMDGPHVGMWTDTSMGGWGG---DEHGRRTRESSYGGEDGASEYGYGD 540

Query: 1098 TGHERGRSN-VSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHRD 934
              HE+GRS+  SREK+R S+                              YREEKD +R+
Sbjct: 541  ANHEKGRSSGASREKERVSDREWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDSYRE 600

Query: 933  HXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            H              RGQ           + E+  RSRSRD DYGKRRRLPSE
Sbjct: 601  HRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLPSE 653


>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
            gi|508708844|gb|EOY00741.1| RNA-binding family protein
            isoform 6 [Theobroma cacao]
          Length = 602

 Score =  333 bits (855), Expect = 3e-88
 Identities = 175/332 (52%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEE+MGEDDEYDDLYNDVNVGEGF Q     +    P             + ++
Sbjct: 29   AIPALADEEMMGEDDEYDDLYNDVNVGEGFLQL----QRSEAPLQPGGLGSTGLKAQRNE 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  RV +    Q + IP V++  K  NV A +   E++ +            G+Y  G 
Sbjct: 85   APEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEKEEQPAVNRPEMV----SGSYPSGS 139

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             +SQK +V +     QV+N+GF+G   A  K+G DP  +P K    P+   + G  GP+ 
Sbjct: 140  SISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQG 199

Query: 2130 GHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKE 1951
               +  N  GT  N P++N+N  +P +E+GPTMLFVGELHWWTTDA+LES+LSQYGR+KE
Sbjct: 200  PPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKE 259

Query: 1950 IKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAY 1771
            IKF+DE+ASGKSKGYCQVEFYD S+A  CKEGMNG+MFNGRACVVAFASPQT++QMG++Y
Sbjct: 260  IKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASY 319

Query: 1770 MNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            MNKNQ Q Q Q  GRRP N+G+GRGG  NYQS
Sbjct: 320  MNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQS 350



 Score =  152 bits (383), Expect = 2e-33
 Identities = 86/181 (47%), Positives = 99/181 (54%), Gaps = 5/181 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 423  MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G ++GMW D SM GWGG   DEHGRRTRESSYGG+D  S+YGYG+
Sbjct: 483  MAPNGMGMMGASGMDGPHAGMWTDASMGGWGG---DEHGRRTRESSYGGEDGASEYGYGD 539

Query: 1098 TGHERGRSN-VSREKDRGSE----XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRD 934
              HE+GRS+  SREK+R SE                             RYREEKD +R+
Sbjct: 540  ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599

Query: 933  H 931
            H
Sbjct: 600  H 600


>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
            gi|508708843|gb|EOY00740.1| RNA-binding family protein
            isoform 5, partial [Theobroma cacao]
          Length = 656

 Score =  333 bits (855), Expect = 3e-88
 Identities = 175/332 (52%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEE+MGEDDEYDDLYNDVNVGEGF Q     +    P             + ++
Sbjct: 29   AIPALADEEMMGEDDEYDDLYNDVNVGEGFLQL----QRSEAPLQPGGLGSTGLKAQRNE 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  RV +    Q + IP V++  K  NV A +   E++ +            G+Y  G 
Sbjct: 85   APEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEKEEQPAVNRPEMV----SGSYPSGS 139

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             +SQK +V +     QV+N+GF+G   A  K+G DP  +P K    P+   + G  GP+ 
Sbjct: 140  SISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQG 199

Query: 2130 GHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKE 1951
               +  N  GT  N P++N+N  +P +E+GPTMLFVGELHWWTTDA+LES+LSQYGR+KE
Sbjct: 200  PPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKE 259

Query: 1950 IKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAY 1771
            IKF+DE+ASGKSKGYCQVEFYD S+A  CKEGMNG+MFNGRACVVAFASPQT++QMG++Y
Sbjct: 260  IKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASY 319

Query: 1770 MNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            MNKNQ Q Q Q  GRRP N+G+GRGG  NYQS
Sbjct: 320  MNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQS 350



 Score =  166 bits (421), Expect = 7e-38
 Identities = 97/228 (42%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 423  MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G ++GMW D SM GWGG   DEHGRRTRESSYGG+D  S+YGYG+
Sbjct: 483  MAPNGMGMMGASGMDGPHAGMWTDASMGGWGG---DEHGRRTRESSYGGEDGASEYGYGD 539

Query: 1098 TGHERGRSN-VSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHRD 934
              HE+GRS+  SREK+R SE                              YREEKD +R+
Sbjct: 540  ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599

Query: 933  HXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRR 790
            H              RGQ           + E++HRSRSRD  Y + +
Sbjct: 600  HRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVGYREEK 647


>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
            gi|508708842|gb|EOY00739.1| RNA-binding family protein
            isoform 4 [Theobroma cacao]
          Length = 697

 Score =  333 bits (855), Expect = 3e-88
 Identities = 175/332 (52%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEE+MGEDDEYDDLYNDVNVGEGF Q     +    P             + ++
Sbjct: 29   AIPALADEEMMGEDDEYDDLYNDVNVGEGFLQL----QRSEAPLQPGGLGSTGLKAQRNE 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  RV +    Q + IP V++  K  NV A +   E++ +            G+Y  G 
Sbjct: 85   APEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEKEEQPAVNRPEMV----SGSYPSGS 139

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             +SQK +V +     QV+N+GF+G   A  K+G DP  +P K    P+   + G  GP+ 
Sbjct: 140  SISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQG 199

Query: 2130 GHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKE 1951
               +  N  GT  N P++N+N  +P +E+GPTMLFVGELHWWTTDA+LES+LSQYGR+KE
Sbjct: 200  PPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKE 259

Query: 1950 IKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAY 1771
            IKF+DE+ASGKSKGYCQVEFYD S+A  CKEGMNG+MFNGRACVVAFASPQT++QMG++Y
Sbjct: 260  IKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASY 319

Query: 1770 MNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            MNKNQ Q Q Q  GRRP N+G+GRGG  NYQS
Sbjct: 320  MNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQS 350



 Score =  152 bits (383), Expect = 2e-33
 Identities = 86/181 (47%), Positives = 99/181 (54%), Gaps = 5/181 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 423  MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G ++GMW D SM GWGG   DEHGRRTRESSYGG+D  S+YGYG+
Sbjct: 483  MAPNGMGMMGASGMDGPHAGMWTDASMGGWGG---DEHGRRTRESSYGGEDGASEYGYGD 539

Query: 1098 TGHERGRSN-VSREKDRGSE----XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRD 934
              HE+GRS+  SREK+R SE                             RYREEKD +R+
Sbjct: 540  ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599

Query: 933  H 931
            H
Sbjct: 600  H 600


>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|590695496|ref|XP_007044905.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|590695500|ref|XP_007044906.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|508708839|gb|EOY00736.1| RNA-binding family protein
            isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
            RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|508708841|gb|EOY00738.1| RNA-binding family protein
            isoform 1 [Theobroma cacao]
          Length = 652

 Score =  333 bits (855), Expect = 3e-88
 Identities = 175/332 (52%), Positives = 220/332 (66%), Gaps = 2/332 (0%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALADEE+MGEDDEYDDLYNDVNVGEGF Q     +    P             + ++
Sbjct: 29   AIPALADEEMMGEDDEYDDLYNDVNVGEGFLQL----QRSEAPLQPGGLGSTGLKAQRNE 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
             P  RV +    Q + IP V++  K  NV A +   E++ +            G+Y  G 
Sbjct: 85   APEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEKEEQPAVNRPEMV----SGSYPSGS 139

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             +SQK +V +     QV+N+GF+G   A  K+G DP  +P K    P+   + G  GP+ 
Sbjct: 140  SISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQG 199

Query: 2130 GHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKE 1951
               +  N  GT  N P++N+N  +P +E+GPTMLFVGELHWWTTDA+LES+LSQYGR+KE
Sbjct: 200  PPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKE 259

Query: 1950 IKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAY 1771
            IKF+DE+ASGKSKGYCQVEFYD S+A  CKEGMNG+MFNGRACVVAFASPQT++QMG++Y
Sbjct: 260  IKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASY 319

Query: 1770 MNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            MNKNQ Q Q Q  GRRP N+G+GRGG  NYQS
Sbjct: 320  MNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQS 350



 Score =  185 bits (470), Expect = 1e-43
 Identities = 106/233 (45%), Positives = 123/233 (52%), Gaps = 5/233 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 423  MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G ++GMW D SM GWGG   DEHGRRTRESSYGG+D  S+YGYG+
Sbjct: 483  MAPNGMGMMGASGMDGPHAGMWTDASMGGWGG---DEHGRRTRESSYGGEDGASEYGYGD 539

Query: 1098 TGHERGRSN-VSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHRD 934
              HE+GRS+  SREK+R SE                              YREEKD +R+
Sbjct: 540  ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599

Query: 933  HXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            H              RGQ           + E++HRSRSRD DYGK+RRLPSE
Sbjct: 600  HRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVDYGKKRRLPSE 652


>ref|XP_010100330.1| Cleavage and polyadenylation specificity factor subunit [Morus
            notabilis] gi|587893932|gb|EXB82464.1| Cleavage and
            polyadenylation specificity factor subunit [Morus
            notabilis]
          Length = 636

 Score =  327 bits (838), Expect = 3e-86
 Identities = 179/334 (53%), Positives = 216/334 (64%), Gaps = 4/334 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AI ALADEELMG+DDEYDDLYNDVNVGEGF Q L   +  S+P            ++   
Sbjct: 27   AISALADEELMGDDDEYDDLYNDVNVGEGFLQ-LQRSEAPSLPAAAGVGNGLQAQKRNFP 85

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV 2305
             P   +  ++ P    IP V+ + +  + G+ F     ++      K    G   Y DG 
Sbjct: 86   EPREEIGGSQQPN---IPGVSAEGRFSSAGSQFPG---QQDGLKVDKKSEAGSMVYPDGA 139

Query: 2304 S--QKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
            S  QK  +V           GF+GS P    +G D   +PGK V  P   P+ G  GPR 
Sbjct: 140  SGSQKGRIV----------AGFQGSKPMLHSVGVDSSDIPGKMVNEPIQAPNSGGAGPRG 189

Query: 2130 GHLMVVNPTGTVAN--QPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
               M  N T   AN   PIVN+N  RP +E+G TMLFVGELHWWTTDA+LES+LSQYGRV
Sbjct: 190  ILPMQGNQTTVNANVSHPIVNENQIRPSIENGSTMLFVGELHWWTTDAELESVLSQYGRV 249

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVE+YD++AAVACKEGM+GH+FNGRACVVAFASPQT++QMG+
Sbjct: 250  KEIKFFDERASGKSKGYCQVEYYDAAAAVACKEGMHGHVFNGRACVVAFASPQTLKQMGA 309

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            AYM+KNQ Q Q Q  GRRP+NDGVGRGG  N+QS
Sbjct: 310  AYMSKNQVQNQSQPQGRRPINDGVGRGGNPNFQS 343



 Score =  174 bits (440), Expect = 4e-40
 Identities = 100/228 (43%), Positives = 113/228 (49%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            M+PQ MMG  FDPTYM               GM+PSFP +NT+    VAPHVNPAFF   
Sbjct: 414  MNPQGMMGTGFDPTYMGRGVGYGGFAGPAFPGMLPSFPAVNTMGFAAVAPHVNPAFFGRG 473

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           GH  GMW D S+ GWGG   +EHGRRTRESSYGGDD  S+YGYG+
Sbjct: 474  MTNNGMGMVGSSLMDGHQGGMWNDPSIGGWGG---EEHGRRTRESSYGGDDGASEYGYGD 530

Query: 1098 TGHERGRSNVSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRDHXXXX 919
            T HE+G      E+D                              YRE KDG RD+    
Sbjct: 531  TNHEKGGRERGSERDWSGNSERRNHEERDQDWDRSQKEQKEHR--YREGKDGSRDYRPKE 588

Query: 918  XXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
                      RGQ         R++QED HRSRSRD DYGKRRRLPSE
Sbjct: 589  RELDYEDDWDRGQSSSRLRSRSRVVQEDHHRSRSRDVDYGKRRRLPSE 636


>ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            6-like [Jatropha curcas] gi|802723892|ref|XP_012085552.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit 6-like [Jatropha curcas]
            gi|802723894|ref|XP_012085553.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit 6-like
            [Jatropha curcas] gi|643714049|gb|KDP26714.1|
            hypothetical protein JCGZ_17872 [Jatropha curcas]
          Length = 656

 Score =  325 bits (832), Expect = 2e-85
 Identities = 176/336 (52%), Positives = 217/336 (64%), Gaps = 7/336 (2%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALA+EE MGEDDEYDDLYNDVNVGE F Q   H+ ++  P               + 
Sbjct: 26   AIPALAEEE-MGEDDEYDDLYNDVNVGENFLQM--HQSQVPPPPTSVGSGGFQTQNVNES 82

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
            +      +T   Q + IP VA++ K  + G +F    + +      KG   G   Y+DG 
Sbjct: 83   KV-----ETGGSQGLKIPEVAVEGKYSDPGTHFP---EPKDVPMGVKGPEMGSVAYSDGS 134

Query: 2307 -VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN 2131
             ++QK  V++M    Q  NIGF GS   P  IG DP  M  K    P+ +P+  A GPR 
Sbjct: 135  SIAQKGRVMEMTHDAQARNIGFHGSSSVPSNIGVDPSDMSRKTANEPAPVPNTAATGPRG 194

Query: 2130 -----GHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQY 1966
                 G+ + +N      N+P VN+N  RP +E+G T+LFVGELHWWTTDA+LES+LSQY
Sbjct: 195  MPQLPGNQISINMD---VNRPTVNENQIRPPVENGSTVLFVGELHWWTTDAELESVLSQY 251

Query: 1965 GRVKEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQ 1786
            GRVKEIKF+DERASGKSKG+CQVEFYD++AA ACKEGMNGH+FNGR CVVAFASPQT++Q
Sbjct: 252  GRVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQ 311

Query: 1785 MGSAYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQ 1678
            MG++YMNK Q Q Q Q  GRRPMNDG GRG   NYQ
Sbjct: 312  MGASYMNKTQGQSQTQNQGRRPMNDGAGRGDNMNYQ 347



 Score =  170 bits (431), Expect = 5e-39
 Identities = 105/239 (43%), Positives = 123/239 (51%), Gaps = 11/239 (4%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            M PQ+MMGA FDPTYM               GM+PSFP +N + L GVAPHVNPAFF   
Sbjct: 422  MPPQNMMGAGFDPTYMGRGAAYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRG 481

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G N+GMW+DTSM+GWG    +E GRRTRESSYGGDD  S+YGYGE
Sbjct: 482  MAPNGMGMMGPSGMDGPNAGMWSDTSMSGWG----EEPGRRTRESSYGGDDGASEYGYGE 537

Query: 1098 TGHERG--RSNVSREKDRGSE---------XXXXXXXXXXXXXXXXXXXXXXXXXRYREE 952
              +E+G   S  SREK+R  E                                  RYREE
Sbjct: 538  VNNEKGARSSAASREKERVPERDWSGNSDRRHRDEREHEWDRSEREHREREHRDQRYREE 597

Query: 951  KDGHRDHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            KD +R+H              RGQ         R + E+D+RSRSRDADYGKRRRLP+E
Sbjct: 598  KDSYREHRQRERDSGYEDDWDRGQSSSKSRTRSRAVPEEDYRSRSRDADYGKRRRLPAE 656


>ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Malus domestica]
            gi|657994880|ref|XP_008389756.1| PREDICTED: RNA-binding
            protein FUS-like [Malus domestica]
          Length = 658

 Score =  321 bits (823), Expect = 2e-84
 Identities = 175/334 (52%), Positives = 214/334 (64%), Gaps = 4/334 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AI ALADEE M EDDEYDDLYNDVNVGEGF Q   HR E  VP            +    
Sbjct: 29   AISALADEEPMVEDDEYDDLYNDVNVGEGFMQM--HRSEAPVPPGGVGNGGLQAQKTNVP 86

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV 2305
             P +R       Q++ IP V++  K    GA F   EQ +   +     G  G       
Sbjct: 87   EPRARAG---VSQDLKIPGVSVQGKYSGAGAQFP--EQNQPPVAKEPELGSTGYVGGASG 141

Query: 2304 SQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLP--DPGAVGPRN 2131
            SQK  V++M    QV  +GF+GS   PP +G D   + GK  G    +P  +PG  GP  
Sbjct: 142  SQKGRVMEMTHDTQVRQMGFQGSTTIPPNVGIDSSDITGK--GNSEYIPSLNPGTAGPPG 199

Query: 2130 GHLMVVNPTGTV--ANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRV 1957
               +  N       AN+P+VN+N  RP +E+G  MLFVGELHWWTTDA++ES LSQYGRV
Sbjct: 200  AAQIPTNQMSIKINANRPMVNENQIRPPIENGSAMLFVGELHWWTTDAEIESXLSQYGRV 259

Query: 1956 KEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGS 1777
            KEIKF+DERASGKSKGYCQVEF+D +AA ACKEGM+G++FNGRACVVAFASPQT++QMG+
Sbjct: 260  KEIKFFDERASGKSKGYCQVEFHDPAAATACKEGMDGYVFNGRACVVAFASPQTLKQMGA 319

Query: 1776 AYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            +Y++K+Q Q Q Q PGRRPMNDGVGRG G N+Q+
Sbjct: 320  SYLSKSQXQAQAQQPGRRPMNDGVGRGAGVNFQA 353



 Score =  169 bits (427), Expect = 1e-38
 Identities = 104/237 (43%), Positives = 123/237 (51%), Gaps = 9/237 (3%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            M+PQ MMG+ FDPTYM               GM+P FP +NT+ L GVAPHVNPAFF   
Sbjct: 426  MNPQGMMGSGFDPTYMGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRG 485

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           GH++GMW D SM  WGG   +EHGRRTRESSYGGDD  S+YGYG+
Sbjct: 486  MAANGMGMMGSSGMEGHHAGMWNDPSMGAWGG---EEHGRRTRESSYGGDDNASEYGYGD 542

Query: 1098 TGHERG--RSNVSREKDRGSE-----XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGH 940
            T +E+G   S  SRE++RGSE                              RY+EEKD +
Sbjct: 543  TNNEKGARSSAASRERERGSERDWSGNSERRHRDGREQDFERSERGEHREHRYKEEKDSY 602

Query: 939  RDHXXXXXXXXXXXXXXRGQ--XXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            R+H              RGQ           + + EDDHRSRSRD DY KRRRLPSE
Sbjct: 603  REHRQRDRDGVYEDDWDRGQSSSRPRSRSRSKAVPEDDHRSRSRDVDY-KRRRLPSE 658


>ref|XP_012085540.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            6-like [Jatropha curcas] gi|802723858|ref|XP_012085541.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit 6-like [Jatropha curcas]
            gi|643714040|gb|KDP26705.1| hypothetical protein
            JCGZ_17863 [Jatropha curcas]
          Length = 651

 Score =  321 bits (823), Expect = 2e-84
 Identities = 178/335 (53%), Positives = 217/335 (64%), Gaps = 6/335 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPALA+EE MGEDDEYDDLYNDVNVGE F Q   H+ E+  P               + 
Sbjct: 26   AIPALAEEE-MGEDDEYDDLYNDVNVGENFLQM--HQSEVPPPTTSISSGGFQAQNVNEP 82

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADG- 2308
            R G     T   Q + IP   ++ K  NV  +F   EQK      AKG   G   Y DG 
Sbjct: 83   RVG-----TGGSQGLNIPGGVVEGKYSNVETHFP--EQKEVPMG-AKGAEMGSVGYPDGS 134

Query: 2307 VSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRN- 2131
            V+QK  V+++   +Q  NIGF+GS   P  +  DP  M  K    P+ +P+    GPR  
Sbjct: 135  VTQKGRVMEVTHDSQARNIGFQGSSSVPSNVVVDPSDMSRKIPNEPAPVPNTSISGPRGI 194

Query: 2130 ----GHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYG 1963
                G+ + +N      N+P +N+N  RP +E+G T+LFVGELHWWTTDA+LES+LSQYG
Sbjct: 195  QQLPGNQISINID---VNRPGMNENQIRPPVENGSTVLFVGELHWWTTDAELESVLSQYG 251

Query: 1962 RVKEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQM 1783
            +VKEIKF+DERASGKSKG+CQVEFYD++AA ACKEGMNGH+FNGR CVVAFASPQT++QM
Sbjct: 252  KVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQM 311

Query: 1782 GSAYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQ 1678
            G++YMNK Q Q Q Q   RRPMNDGVGRGG  NYQ
Sbjct: 312  GASYMNKTQGQPQTQNQARRPMNDGVGRGGNMNYQ 346



 Score =  169 bits (429), Expect = 8e-39
 Identities = 102/234 (43%), Positives = 119/234 (50%), Gaps = 6/234 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            M PQ+MMG  FDPTYM               GM+PSFP +N + L GVAPHVNPAFF   
Sbjct: 422  MPPQNMMGGGFDPTYMGRGAGYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRG 481

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G N+GMW+DTSM GWG    +E GRRTRESSYGGDD  S+YGYGE
Sbjct: 482  MAPNGMGMMGPSAMDGPNAGMWSDTSMGGWG----EEPGRRTRESSYGGDDGASEYGYGE 537

Query: 1098 TGHERGR--SNVSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHR 937
              +E+G   S  SREK+R  E                              YREEKD +R
Sbjct: 538  VNNEKGTRSSAASREKERAPERDWSGNSDRRHRDEREHDWDRSEREHREHRYREEKDSYR 597

Query: 936  DHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            +H              RGQ         R + E+D+R RSRDADYGKRRRLPS+
Sbjct: 598  EHRRRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRPRSRDADYGKRRRLPSD 651


>ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
            [Pyrus x bretschneideri]
          Length = 656

 Score =  321 bits (822), Expect = 2e-84
 Identities = 180/339 (53%), Positives = 223/339 (65%), Gaps = 9/339 (2%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AI ALADEELM EDDE+DDLYNDVNVGEGF Q   HR E  +P            +   D
Sbjct: 29   AISALADEELMVEDDEFDDLYNDVNVGEGFMQM--HRSEAPLPTGGVGNGGLQAQKT--D 84

Query: 2484 RPGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV 2305
             P  RV  +   Q++ IP V++  K    GA F   EQ +   +     G  G  YA G 
Sbjct: 85   VPEPRV-QSGVSQDLKIPGVSVQGKYSGAGAQFP--EQNQPPVAKEPELGSTG--YASGA 139

Query: 2304 S--QKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGK----FVGG--PSSLPDPG 2149
            S  QK  V+DM    QV ++ F+GS   PP +G D   + GK    FV    P+S   PG
Sbjct: 140  SGSQKGRVMDMTHDTQVRHMAFQGSTTMPPNVGVDSSDITGKGNSEFVPSLNPASAGPPG 199

Query: 2148 AVG-PRNGHLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILS 1972
            A   P N   + +N     AN+P+VN+N  RP +E+G   LFVGELHWWTTDA++ES++S
Sbjct: 200  ATQIPTNQMSIKIN-----ANRPMVNENQIRPPIENGSATLFVGELHWWTTDAEIESVIS 254

Query: 1971 QYGRVKEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTV 1792
            QYGRVKEIKF+DERASGKSKGYCQVEF+D +AA ACKEGM+G++FNGRACVVAFASPQT+
Sbjct: 255  QYGRVKEIKFFDERASGKSKGYCQVEFHDQAAATACKEGMDGYVFNGRACVVAFASPQTL 314

Query: 1791 RQMGSAYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            +QMG++Y++K+Q Q Q Q PGRRPMNDG GRGGG N+Q+
Sbjct: 315  KQMGASYLSKSQGQAQAQQPGRRPMNDGGGRGGGVNFQA 353



 Score =  175 bits (444), Expect = 2e-40
 Identities = 105/235 (44%), Positives = 123/235 (52%), Gaps = 7/235 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            M+PQ MMG+ FDPTYM               GM+P FP +NT+ L GVAPHVNPAFF   
Sbjct: 426  MNPQGMMGSGFDPTYMGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFARG 485

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           GH++GMW D SM  WGG   +EHGRRTRESSYGGDD  S+YGYG+
Sbjct: 486  MATNGMGMMGSSGMEGHHAGMWNDPSMGAWGG---EEHGRRTRESSYGGDDNASEYGYGD 542

Query: 1098 TGHERG--RSNVSREKDRGSE-----XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGH 940
            T +E+G   S  SRE++RGSE                              RY+EEKD +
Sbjct: 543  TNNEKGPRSSAASRERERGSERDWSGNSERRHRDDREQDYERSERGEHREHRYKEEKDSY 602

Query: 939  RDHXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            RDH              RGQ         + + EDDHRSRSRD DY KRRRLPSE
Sbjct: 603  RDHRQRDRDGGYEDDWDRGQSSSRPRSRSKAVPEDDHRSRSRDVDY-KRRRLPSE 656


>ref|XP_011042356.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            6-like [Populus euphratica]
            gi|743898139|ref|XP_011042357.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit 6-like
            [Populus euphratica] gi|743898141|ref|XP_011042358.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit 6-like [Populus euphratica]
          Length = 639

 Score =  317 bits (812), Expect = 3e-83
 Identities = 175/335 (52%), Positives = 213/335 (63%), Gaps = 5/335 (1%)
 Frame = -1

Query: 2664 AIPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDD 2485
            AIPAL +EEL GEDDEYDDLYNDVNVGE F Q   H  E   P               + 
Sbjct: 16   AIPALVEEEL-GEDDEYDDLYNDVNVGENFLQM--HGSEAPAPPATAGNGGFQTRNAHES 72

Query: 2484 RPGSRVPDTRTPQEVTIPS--VAMDSKSLNVGANFSNAEQKRSSFS-SAKGFGEGGGNYA 2314
            R      +T   Q +TI    VA++ K  N GA F   EQK+++    A   G  G    
Sbjct: 73   RV-----ETGGSQVLTISGAGVAVEGKYSNAGAPFP--EQKQAAIGVEANDVGSIGYGDG 125

Query: 2313 DGVSQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPR 2134
              V+QK   ++M     V N+GF+     PP  G DP  M  K    P +LP+ G+ GPR
Sbjct: 126  SSVAQKGRFIEMGHDVHVRNMGFQKPASVPPGTGVDPSDMSRKIAKEPETLPNTGSSGPR 185

Query: 2133 NGHLMVVNPTG--TVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGR 1960
                M VN       AN+P+VN+N  RP +E+GPT L+VGELHWWTTDA+LES+ SQYGR
Sbjct: 186  GVPQMQVNQMNMNADANRPVVNENQVRPPIENGPTTLYVGELHWWTTDAELESVASQYGR 245

Query: 1959 VKEIKFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMG 1780
            VKEIKF+DERASGKSKGYCQV+FY+++AA ACKEGMN H+FNGR CVVAFAS QT++QMG
Sbjct: 246  VKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFNGRPCVVAFASAQTLKQMG 305

Query: 1779 SAYMNKNQAQGQPQVPGRRPMNDGVGRGGGSNYQS 1675
            ++YM+K Q Q QPQ  GR  MNDG+GRGG +NYQS
Sbjct: 306  ASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQS 340



 Score =  159 bits (402), Expect = 1e-35
 Identities = 100/231 (43%), Positives = 113/231 (48%), Gaps = 3/231 (1%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MH Q MMGA FDP YM               GM+PSFP +N++ L GVAPHVNPAFF   
Sbjct: 413  MHHQGMMGAGFDPLYMGRGGGYGGFAGPGFPGMLPSFPAVNSMGLAGVAPHVNPAFFARG 472

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G N G W DTSM GWG    +E GRRTRESSY GD+  S+YGYGE
Sbjct: 473  MAPNGMGMMASSGMEGPNPGKWPDTSMGGWG----EEPGRRTRESSYDGDEGASEYGYGE 528

Query: 1098 TGHERG--RSNVSREKDRGSE-XXXXXXXXXXXXXXXXXXXXXXXXXRYREEKDGHRDHX 928
              HE+G   S  SREK+R SE                          +YREEKD +R H 
Sbjct: 529  GNHEKGARSSGASREKERVSERDWSGNSDRRHRDEREQDWDRSEREHKYREEKDTYRGHR 588

Query: 927  XXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
                         RG          R   E+D+RSRSRD DYGKRRR PSE
Sbjct: 589  QRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSRSRDVDYGKRRRPPSE 639


>ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185 [Gossypium raimondii]
            gi|823252908|ref|XP_012459071.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit CG7185
            [Gossypium raimondii] gi|763811133|gb|KJB78035.1|
            hypothetical protein B456_012G173800 [Gossypium
            raimondii]
          Length = 648

 Score =  316 bits (810), Expect = 5e-83
 Identities = 170/330 (51%), Positives = 213/330 (64%), Gaps = 2/330 (0%)
 Frame = -1

Query: 2661 IPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDDR 2482
            IPALAD E++GEDDEYDDLYNDVNVGEGF Q      + S P               ++ 
Sbjct: 27   IPALADVEMIGEDDEYDDLYNDVNVGEGFLQL-----QRSEPPVQPGTGGTGLQAHKNEA 81

Query: 2481 PGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV- 2305
            P  R  +    Q   I  +++  K  NV A +  A+ +     +      G GNY  G  
Sbjct: 82   PEPR-GEAGGSQGPNISGISVQGKYPNVSAGYREADVQ----PTVNRPEIGSGNYPSGSA 136

Query: 2304 -SQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRNG 2128
             SQ  +V++     QV+N+GF+G   A  K+G  P  +P K    P+   + G  GP+  
Sbjct: 137  SSQGGSVMETNFDTQVKNMGFQGLTSASSKVGTGPSVVPQKIANNPAQSLNSGTGGPQGA 196

Query: 2127 HLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKEI 1948
              +  N  G   N P++N+N  RP +E+GPTMLFVGELHWWTTDA+LES+LSQYGRVKEI
Sbjct: 197  SQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEI 256

Query: 1947 KFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAYM 1768
            KF+DERASGKSKGYCQVEFYDS++A ACKEGMNG+MFNGRACVVAFASPQT++QMG++YM
Sbjct: 257  KFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYM 316

Query: 1767 NKNQAQGQPQVPGRRPMNDGVGRGGGSNYQ 1678
            NK+Q Q Q Q  GRRP N+G G+GG  NYQ
Sbjct: 317  NKDQGQPQVQPQGRRP-NEGFGKGGNMNYQ 345



 Score =  186 bits (472), Expect = 9e-44
 Identities = 106/233 (45%), Positives = 123/233 (52%), Gaps = 5/233 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 419  MHPQGMMGAGFDPTYMGRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 478

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G +SGMW DT+M GWGG   DEH RRTRESSYGG+D  S+YGYG+
Sbjct: 479  MAPNGLGMMGVAGMDGPHSGMWTDTNMGGWGG---DEHDRRTRESSYGGEDGASEYGYGD 535

Query: 1098 TGHERGRSN-VSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHRD 934
              HE+GRS+  +REKDR SE                              YREEKD +R+
Sbjct: 536  ANHEKGRSSGATREKDRASEREWSGNSERRHHDEKERESDRPEREHREHRYREEKDSYRE 595

Query: 933  HXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            H              RGQ            +E++HRSRSRD DYGK+RRLPSE
Sbjct: 596  HRHRGRDVDYDDDWDRGQSSSRSRNRSHATREEEHRSRSRDVDYGKKRRLPSE 648


>gb|KHG22501.1| Cleavage and polyadenylation specificity factor subunit [Gossypium
            arboreum]
          Length = 648

 Score =  316 bits (810), Expect = 5e-83
 Identities = 170/330 (51%), Positives = 213/330 (64%), Gaps = 2/330 (0%)
 Frame = -1

Query: 2661 IPALADEELMGEDDEYDDLYNDVNVGEGFTQSLNHRKEMSVPXXXXXXXXXXXXQKIDDR 2482
            IPALAD E++GEDDEYDDLYNDVNVGEGF Q      + S P               ++ 
Sbjct: 27   IPALADVEMIGEDDEYDDLYNDVNVGEGFLQL-----QRSEPPVQPGTGSIGLQAHKNEA 81

Query: 2481 PGSRVPDTRTPQEVTIPSVAMDSKSLNVGANFSNAEQKRSSFSSAKGFGEGGGNYADGV- 2305
            P  R  +    Q   I  +++  K  NV A +  A+ +     +      G GNY  G  
Sbjct: 82   PEPR-GEAGGSQGPNISGISVQGKYPNVSAGYREADVQ----PAVNRPEIGSGNYPSGSA 136

Query: 2304 -SQKATVVDMARGNQVENIGFRGSGPAPPKIGPDPGQMPGKFVGGPSSLPDPGAVGPRNG 2128
             SQ  +V++     QV+N+GF+G   A  K+G  P  +P K    P+   + G  GP+  
Sbjct: 137  SSQGGSVMETNFDTQVKNMGFQGLTSASSKVGTGPSVVPQKIANNPAQSLNSGTGGPQGA 196

Query: 2127 HLMVVNPTGTVANQPIVNDNSSRPILESGPTMLFVGELHWWTTDADLESILSQYGRVKEI 1948
              +  N  G   N P++N+N  RP +E+GPTMLFVGELHWWTTDA+LES+LSQYGRVKEI
Sbjct: 197  SQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEI 256

Query: 1947 KFYDERASGKSKGYCQVEFYDSSAAVACKEGMNGHMFNGRACVVAFASPQTVRQMGSAYM 1768
            KF+DERASGKSKGYCQVEFYDS++A ACKEGMNG+MFNGRACVVAFASPQT++QMG++YM
Sbjct: 257  KFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYM 316

Query: 1767 NKNQAQGQPQVPGRRPMNDGVGRGGGSNYQ 1678
            NK+Q Q Q Q  GRRP N+G G+GG  NYQ
Sbjct: 317  NKDQGQPQVQPQGRRP-NEGFGKGGNMNYQ 345



 Score =  186 bits (472), Expect = 9e-44
 Identities = 106/233 (45%), Positives = 123/233 (52%), Gaps = 5/233 (2%)
 Frame = -1

Query: 1458 MHPQSMMGAAFDPTYMXXXXXXXXXXXXXXXGMMPSFPTMNTVALPGVAPHVNPAFFXXX 1279
            MHPQ MMGA FDPTYM               GM+PSFP +NT+ L GVAPHVNPAFF   
Sbjct: 419  MHPQGMMGAGFDPTYMGRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 478

Query: 1278 XXXXXXXXXXXXXXXGHNSGMWADTSMAGWGGSAGDEHGRRTRESSYGGDDVTSDYGYGE 1099
                           G +SGMW DT+M GWGG   DEH RRTRESSYGG+D  S+YGYG+
Sbjct: 479  MAPNGLGMMGVAGMDGPHSGMWTDTNMGGWGG---DEHDRRTRESSYGGEDGASEYGYGD 535

Query: 1098 TGHERGRSN-VSREKDRGSEXXXXXXXXXXXXXXXXXXXXXXXXXR----YREEKDGHRD 934
              HE+GRS+  +REKDR SE                              YREEKD +R+
Sbjct: 536  ANHEKGRSSGATREKDRASEREWSGNSERRHHDEKERESDRPEREHREHRYREEKDSYRE 595

Query: 933  HXXXXXXXXXXXXXXRGQXXXXXXXXXRMIQEDDHRSRSRDADYGKRRRLPSE 775
            H              RGQ            +E++HRSRSRD DYGK+RRLPSE
Sbjct: 596  HRHRGRDLDYDDDWDRGQSSSRSRNRSHATREEEHRSRSRDVDYGKKRRLPSE 648