BLASTX nr result
ID: Cinnamomum23_contig00013484
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00013484
(1777 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_862785.1| RNA polymerase alpha subunit [Calycanthus flori... 629 e-177
ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chl... 622 e-175
ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [... 619 e-174
ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [... 617 e-173
ref|YP_006576146.1| RpoA (chloroplast) [Magnolia denudata] gi|34... 613 e-172
ref|YP_740234.1| RNA polymerase alpha subunit [Liriodendron tuli... 613 e-172
ref|YP_004769746.1| RNA polymerase alpha subunit [Magnolia kwang... 611 e-172
gb|AEX98283.1| RNA polymerase alpha subunit (chloroplast) [Magno... 600 e-168
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]... 588 e-165
gb|AEZ49455.1| RNA polymerase alpha subunit, partial [Neoastelia... 587 e-165
ref|YP_009093981.1| RNA polymerase alpha subunit (chloroplast) [... 587 e-164
gb|ADD31217.1| RNA polymerase alpha subunit protein (chloroplast... 585 e-164
ref|YP_009123284.1| RNA polymerase alpha subunit (chloroplast) [... 585 e-164
ref|YP_319795.1| RNA polymerase alpha subunit [Acorus calamus] g... 584 e-164
gb|AEX94393.1| RNA polymerase alpha subunit (chloroplast) [Kniph... 584 e-164
gb|AEX94377.1| RNA polymerase alpha subunit (chloroplast) [Manfr... 583 e-163
gb|AEX94392.1| RNA polymerase alpha subunit (chloroplast) [Hawor... 583 e-163
gb|AEX94390.1| RNA polymerase alpha subunit (chloroplast) [Aloe ... 583 e-163
sp|Q5QA74.1|RPOA_ACOGR RecName: Full=DNA-directed RNA polymerase... 583 e-163
gb|AEX94374.1| RNA polymerase alpha subunit (chloroplast) [Camas... 582 e-163
>ref|NP_862785.1| RNA polymerase alpha subunit [Calycanthus floridus var. glaucus]
gi|41688654|sp|Q7YJU6.1|RPOA_CALFG RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Calycanthus floridus var. glaucus]
gi|32399410|emb|CAD28752.1| RNA polymerase alpha subunit
[Calycanthus floridus var. glaucus]
Length = 340
Score = 629 bits (1621), Expect = e-177
Identities = 314/338 (92%), Positives = 323/338 (95%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDS RLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSNRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVHEILMNLKEIVL+SNLYGTRDASICVRGPKYVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIA+LTEPI+LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPINLCIELQIERDRGYRMKAPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYGS NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DIH
Sbjct: 181 NANHSIHSYGSGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLN 240
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDNQNRFTVS FT HDRL NIRKNKK IALKCIFIDQSELP+RTYNCLKRSNIHTLLDL
Sbjct: 241 LEDNQNRFTVSPFTLHDRLGNIRKNKKEIALKCIFIDQSELPTRTYNCLKRSNIHTLLDL 300
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNK 1108
LNNSQEDLMRIEH RIED+KQILDILQKHF I LPKNK
Sbjct: 301 LNNSQEDLMRIEHFRIEDIKQILDILQKHFGIDLPKNK 338
>ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Magnolia
yunnanensis] gi|573015534|gb|AHF72112.1| DNA-directed RNA
polymerase alpha chain (chloroplast) [Magnolia
yunnanensis]
Length = 337
Score = 622 bits (1604), Expect = e-175
Identities = 311/339 (91%), Positives = 323/339 (95%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DIH
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIH-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FFTFHDRLANIRKNKKGIALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIEH RIEDVKQILDILQKHF I LPKNKF
Sbjct: 299 LSNSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [Magnolia officinalis]
gi|452848803|ref|YP_007474484.1| RNA polymerase alpha
subunit (chloroplast) [Magnolia officinalis subsp.
biloba] gi|619275767|ref|YP_009026913.1| RNA polymerase
alpha subunit (plastid) [Magnolia tripetala]
gi|372862453|gb|AEX98534.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis]
gi|372862536|gb|AEX98616.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862621|gb|AEX98700.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862706|gb|AEX98784.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|608608435|gb|AHW51989.1| RNA polymerase alpha subunit
[Magnolia tripetala]
Length = 337
Score = 619 bits (1597), Expect = e-174
Identities = 310/339 (91%), Positives = 323/339 (95%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIN-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FFTFHDRLANIRKNKKGIALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIEH RIEDVKQILDILQKHF I LPKNKF
Sbjct: 299 LSNSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [Magnolia grandiflora]
gi|372862875|gb|AEX98951.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
gi|372863045|gb|AEX99119.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
Length = 337
Score = 617 bits (1590), Expect = e-173
Identities = 309/339 (91%), Positives = 322/339 (94%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVH ILMNLKEIVL S+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLGSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIN-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FFTFHDRLANIRKNKKGIALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPFFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIEH RIEDVKQILDILQKHF I LPKNKF
Sbjct: 299 LSNSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_006576146.1| RpoA (chloroplast) [Magnolia denudata] gi|343887570|gb|AEM65249.1|
RpoA [Magnolia denudata] gi|372862283|gb|AEX98366.1| RNA
polymerase alpha subunit (chloroplast) [Magnolia
denudata]
Length = 337
Score = 613 bits (1580), Expect = e-172
Identities = 308/339 (90%), Positives = 321/339 (94%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+D +
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDRN-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FTFHDRLANIRKNKKGIALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPPFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIEH RIEDVKQILDILQKHF I LPKNKF
Sbjct: 299 LSNSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_740234.1| RNA polymerase alpha subunit [Liriodendron tulipifera]
gi|122239940|sp|Q0G9I7.1|RPOA_LIRTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Liriodendron tulipifera]
gi|113201026|gb|ABI32541.1| RNA polymerase alpha subunit
[Liriodendron tulipifera]
Length = 337
Score = 613 bits (1580), Expect = e-172
Identities = 307/339 (90%), Positives = 320/339 (94%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITR KSEKV +EY TIVGIEESVHEILMNLKEIVLRS+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRVKSEKVPNEYYTIVGIEESVHEILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI
Sbjct: 181 NANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDI--V 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FTFHDRLANIRKNKKGIALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPLFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIEH RIEDVKQILDILQKHF I LPKNKF
Sbjct: 299 LSNSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_004769746.1| RNA polymerase alpha subunit [Magnolia kwangsiensis]
gi|302424212|gb|ADL39088.1| RNA polymerase alpha subunit
[Magnolia kwangsiensis]
Length = 337
Score = 611 bits (1576), Expect = e-172
Identities = 306/338 (90%), Positives = 320/338 (94%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +I+RDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIDRDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+DI+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIN-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FFTFHD LANIRKNKKGI LKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPFFTFHDILANIRKNKKGITLKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNK 1108
L+NSQEDLMRIEH RIEDVKQILDILQKHF I LPKNK
Sbjct: 299 LSNSQEDLMRIEHFRIEDVKQILDILQKHFTIDLPKNK 336
>gb|AEX98283.1| RNA polymerase alpha subunit (chloroplast) [Magnolia liliiflora]
Length = 337
Score = 600 bits (1547), Expect = e-168
Identities = 303/339 (89%), Positives = 315/339 (92%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESRTDSKRLYYGRF+L+PLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVH ILMNLKEIVLRS+LYGTRDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
II PPSVE+VDTTQHIA+LTEPI LCIE +IERDRGYRMK+PNNYQDGSYPIDAVSMPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIERDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE+D +
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDRN-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
LEDN NRFTV FTFHDRLANIRKNKKGIALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 LEDNPNRFTVPPFTFHDRLANIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L LMRIEH RIEDVKQILDILQKHF I LPKNKF
Sbjct: 299 LXXXXXXLMRIEHFRIEDVKQILDILQKHFTIDLPKNKF 337
>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
[Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
polymerase alpha subunit (chloroplast) [Nelumbo lutea]
Length = 339
Score = 588 bits (1516), Expect = e-165
Identities = 297/341 (87%), Positives = 315/341 (92%), Gaps = 2/341 (0%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+AVSTRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEK+ HEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIA+LTEPI LCI +IER+RGYRMK+PNN QDGSYPIDAV MPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LI+LFIPFL A+EEDI
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLDAQEEDIQ-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNK--KGIALKCIFIDQSELPSRTYNCLKRSNIHTLL 988
LEDNQN+ T+ FFTFHDRL +RKNK K IALKCIFIDQSELP RTYNCLKRSNIHTLL
Sbjct: 239 LEDNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLL 298
Query: 989 DLLNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
DLLNNSQEDLM++EH +IEDVKQILDILQKHFAI LPKNKF
Sbjct: 299 DLLNNSQEDLMKMEHFQIEDVKQILDILQKHFAIDLPKNKF 339
>gb|AEZ49455.1| RNA polymerase alpha subunit, partial [Neoastelia spectabilis]
Length = 337
Score = 587 bits (1514), Expect = e-165
Identities = 295/339 (87%), Positives = 310/339 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVA STRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAGSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVHEIL+NLKEIV RSNLYG RDASICVRGPKYVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILINLKEIVFRSNLYGVRDASICVRGPKYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDT QHIANLTEPI LCI +I+RDRGYRMK NN QDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTAQHIANLTEPIDLCIGLQIKRDRGYRMKPTNNSQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIH YG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F
Sbjct: 181 NANHSIHCYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+N+NRFT+ FTF DRL N+ K KKGI KCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 240 -EENKNRFTLPLFTFQDRLTNLNKKKKGIPFKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIE+ RIEDVKQILD LQKH AI+LPKNKF
Sbjct: 299 LSNSQEDLMRIEYFRIEDVKQILDTLQKHLAIHLPKNKF 337
>ref|YP_009093981.1| RNA polymerase alpha subunit (chloroplast) [Nelumbo nucifera]
gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|290489668|gb|ADD31218.1| RNA polymerase alpha subunit
protein (chloroplast) [Nelumbo nucifera]
gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|725824076|gb|AIY33855.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
Length = 339
Score = 587 bits (1513), Expect = e-164
Identities = 297/341 (87%), Positives = 314/341 (92%), Gaps = 2/341 (0%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+AVSTRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEK+ HEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDA ICVRGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIA+LTEPI LCI +IER+RGYRMK+PNN QDGSYPIDAV MPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFL A+EEDI
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLDAQEEDIQ-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNK--KGIALKCIFIDQSELPSRTYNCLKRSNIHTLL 988
LEDNQN+ T+ FFTFHDRL +RKNK K IALKCIFIDQSELP RTYNCLKRSNIHTLL
Sbjct: 239 LEDNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLL 298
Query: 989 DLLNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
DLLNNSQEDLM++ H +IEDVKQILDILQKHFAI LPKNKF
Sbjct: 299 DLLNNSQEDLMKMFHFQIEDVKQILDILQKHFAIDLPKNKF 339
>gb|ADD31217.1| RNA polymerase alpha subunit protein (chloroplast) [Meliosma aff.
cuneifolia Moore 333]
Length = 337
Score = 585 bits (1509), Expect = e-164
Identities = 296/338 (87%), Positives = 309/338 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEVAVSTRTLQWKCVESR DSKRLYYGRF++SPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRADSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSE + HEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGP YVTAQD
Sbjct: 61 CITRAKSETIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISP SVE+VDTTQHIA+LTEPI+LCI +IER+ GYRMK+P N QDGSYPIDAV MPVR
Sbjct: 121 IISPSSVEIVDTTQHIASLTEPINLCIGLQIERNHGYRMKTPKNSQDGSYPIDAVFMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLH EEEDI
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEDI--I 238
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
+EDNQNRFTV FFTFHDRLA +RKNKK IALK IFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 239 IEDNQNRFTVPFFTFHDRLAKLRKNKKEIALKFIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNK 1108
LN SQEDLMRIEH RIEDVK IL ILQKHF I LPKNK
Sbjct: 299 LNKSQEDLMRIEHFRIEDVKHILGILQKHFEINLPKNK 336
>ref|YP_009123284.1| RNA polymerase alpha subunit (chloroplast) [Chloranthus japonicus]
gi|756761888|gb|AJM70003.1| RNA polymerase alpha subunit
(chloroplast) [Chloranthus japonicus]
Length = 334
Score = 585 bits (1508), Expect = e-164
Identities = 293/334 (87%), Positives = 311/334 (93%), Gaps = 2/334 (0%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+AVSTRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRADSKRLYYGRFMLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAK +KV HEYSTIVGIEES+HEI MNLKEIVLRSNLYGTR+ASICVRGP+YVTAQD
Sbjct: 61 CITRAKLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIA+LTEPI LCIE +I+RDRGYRMK+PN YQDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIELQIQRDRGYRMKTPNKYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLH+EEE IH
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHSEEEGIH-- 238
Query: 815 LEDNQNRFTVSFFTFHDRLA--NIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLL 988
LEDN NRF + FFTFHD LA NIRKNKKGIALKCIFIDQSELP RTYNCLKRSNI+TLL
Sbjct: 239 LEDNPNRFHIPFFTFHDGLANTNIRKNKKGIALKCIFIDQSELPPRTYNCLKRSNINTLL 298
Query: 989 DLLNNSQEDLMRIEHLRIEDVKQILDILQKHFAI 1090
DLL+NSQED M+IEH RIEDVKQILDILQKHF I
Sbjct: 299 DLLSNSQEDFMKIEHFRIEDVKQILDILQKHFTI 332
>ref|YP_319795.1| RNA polymerase alpha subunit [Acorus calamus]
gi|161622341|ref|YP_001586213.1| RNA polymerase alpha
subunit [Acorus americanus]
gi|90101572|sp|Q3V502.1|RPOA_ACOCL RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Acorus calamus] gi|69215818|gb|AAZ03865.1|
RNA polymerase alpha chain [Acorus americanus]
gi|74381741|emb|CAI53826.1| RNA polymerase alpha subunit
[Acorus calamus] gi|160369884|gb|ABX38775.1| RNA
polymerase alpha subunit [Acorus americanus]
Length = 337
Score = 584 bits (1506), Expect = e-164
Identities = 295/339 (87%), Positives = 313/339 (92%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEV STR LQWKCVESR DSKRLYYGRF+LSPL+KGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVVGSTRALQWKCVESRADSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTI GIEESVHEILMNLKEIVLRSNLYGTRDASICVRGP+ VTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIA+LTEPI LCI +I+RDRGYRMK+ N QDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ N+KQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F
Sbjct: 181 NANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+NQNRFTV FTF DRLAN++KNKK IALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 240 -EENQNRFTVPPFTFPDRLANLKKNKKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLM+IE+ RIEDVKQILD LQKHFAI LPKNKF
Sbjct: 299 LSNSQEDLMKIEYFRIEDVKQILDTLQKHFAIDLPKNKF 337
>gb|AEX94393.1| RNA polymerase alpha subunit (chloroplast) [Kniphofia linearifolia]
Length = 339
Score = 584 bits (1506), Expect = e-164
Identities = 291/339 (85%), Positives = 309/339 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+A S RTLQWKCVESR D KRLYYGRF+LSPLMKGQ DTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEIAGSIRTLQWKCVESRIDGKRLYYGRFILSPLMKGQGDTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYST+VGIEESVHEIL+NLKEIVLRSNLYG RDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTVVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIANLTEPI LCIE +I+RDRGYR NNYQDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRTNPTNNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE DIHF
Sbjct: 181 NANHSIHSYGNRNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+N+NRFT FFTF + L N++KNKKGI LKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 240 -EENKNRFTRPFFTFQNGLTNLKKNKKGIPLKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
LN SQEDLMRIE+ RIEDVKQILD L+KHF+I LPKNKF
Sbjct: 299 LNKSQEDLMRIEYFRIEDVKQILDTLRKHFSINLPKNKF 337
>gb|AEX94377.1| RNA polymerase alpha subunit (chloroplast) [Manfreda virginica]
gi|372481406|gb|AEX94378.1| RNA polymerase alpha subunit
(chloroplast) [Polianthes sp. Pires 2011-05]
Length = 339
Score = 583 bits (1504), Expect = e-163
Identities = 292/339 (86%), Positives = 311/339 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+A STRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEIAASTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVHEI +NLKEIVLRSNLYG RDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEIFINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIANLTEPI L IE +I+RDRGYR+ NN QDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEE+IHF
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENIHF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+N+NRFT+ FTF +RL N++KNKKGI LKCIFIDQ ELP RTYNCLKRSNIHTLLDL
Sbjct: 240 -EENKNRFTLPLFTFQNRLTNLKKNKKGIPLKCIFIDQLELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIE+ R EDVKQILD LQKHFAI LPKNKF
Sbjct: 299 LSNSQEDLMRIEYFRTEDVKQILDTLQKHFAINLPKNKF 337
>gb|AEX94392.1| RNA polymerase alpha subunit (chloroplast) [Haworthia cymbiformis]
Length = 339
Score = 583 bits (1503), Expect = e-163
Identities = 291/339 (85%), Positives = 311/339 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+A S RTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR++LLGEIEGT
Sbjct: 1 MVREEIAGSIRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRSLLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVHEIL+NLKEIVLRSNLYG RDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSV++VDTTQHIANLTEPI L IE +I+RDRGYRM NYQDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVKIVDTTQHIANLTEPIDLLIELQIKRDRGYRMNPTKNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE DIHF
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+N+NRFT+ FFTF +R N++KNKKGI LKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 240 -EENKNRFTLPFFTFQNRFTNLKKNKKGIPLKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
LN SQEDLM+IE+ RIEDVKQILD L+KHFAI LPKNKF
Sbjct: 299 LNKSQEDLMKIEYFRIEDVKQILDTLRKHFAINLPKNKF 337
>gb|AEX94390.1| RNA polymerase alpha subunit (chloroplast) [Aloe vera]
Length = 339
Score = 583 bits (1503), Expect = e-163
Identities = 292/339 (86%), Positives = 310/339 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+A S RTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGE+EGT
Sbjct: 1 MVREEIAGSIRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEMEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVHEIL+NLKEIVLRSNLYG RDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIANL EPI L IE +I+RDRGYRM NYQDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLMEPIDLRIELQIKRDRGYRMNPTKNYQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANH IHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE DIHF
Sbjct: 181 NANHGIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+N+NRFT+ FFTF +R N++KNKKGI LKCIFIDQSELPSRTYNCLKRSNIHTLLDL
Sbjct: 240 -EENKNRFTLPFFTFQNRFTNLKKNKKGIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
LN SQEDLMRIE+ RIEDVKQILD L+KHFAI LPKNKF
Sbjct: 299 LNKSQEDLMRIEYFRIEDVKQILDTLRKHFAINLPKNKF 337
>sp|Q5QA74.1|RPOA_ACOGR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP;
AltName: Full=Plastid-encoded RNA polymerase subunit
alpha; Short=RNA polymerase subunit alpha (chloroplast)
[Acorus gramineus] gi|56122468|gb|AAV74359.1| RpoA
[Acorus gramineus]
Length = 337
Score = 583 bits (1502), Expect = e-163
Identities = 294/339 (86%), Positives = 313/339 (92%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREEV STR LQWKCVESR DSKRLYYGRF+LSPL+KGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEVVGSTRALQWKCVESRADSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTI GIEESVHEILMNLKEIVLRSNLYGTRDASICVRGP+ VTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIA+LTEPI LCI +I+RDRGYRMK+ N QDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ N+KQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEEEDI+F
Sbjct: 181 NANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+NQNRFTV FTF DRLAN++KNKK IALKCIFIDQSELP RTYNCLKRSNIHTLLDL
Sbjct: 240 -EENQNRFTVPPFTFPDRLANLKKNKKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLM+IE+ RIEDVKQILD L+KHFAI LPKNKF
Sbjct: 299 LSNSQEDLMKIEYFRIEDVKQILDTLRKHFAIDLPKNKF 337
>gb|AEX94374.1| RNA polymerase alpha subunit (chloroplast) [Camassia scilloides]
Length = 339
Score = 582 bits (1501), Expect = e-163
Identities = 292/339 (86%), Positives = 311/339 (91%)
Frame = +2
Query: 95 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGT 274
MVREE+A STRTLQWKCVESR DSKRLYYGRF+LSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREEIAASTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 275 CITRAKSEKVSHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPKYVTAQD 454
CITRAKSEKV HEYSTIVGIEESVHEIL+NLKEIVLRSNLYG RDASICVRGP+YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILINLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 455 IISPPSVELVDTTQHIANLTEPIHLCIEFKIERDRGYRMKSPNNYQDGSYPIDAVSMPVR 634
IISPPSVE+VDTTQHIANLTEPI L IE +I+RDRGYR+ NN QDGSYPIDAVSMPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPRNNSQDGSYPIDAVSMPVR 180
Query: 635 NANHSIHSYGSENEKQEILFLEIWTNGSLTPKEALREASRTLIDLFIPFLHAEEEDIHFY 814
NANHSIHSYG+ NEKQEILFLEIWTNGSLTPKEAL EASR LIDLFIPFLHAEE DIHF
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHF- 239
Query: 815 LEDNQNRFTVSFFTFHDRLANIRKNKKGIALKCIFIDQSELPSRTYNCLKRSNIHTLLDL 994
E+N+NRFT+S F F ++L N++KNKKGI LKCIFIDQ ELP RTYNCLKRSNIHTLLDL
Sbjct: 240 -EENKNRFTLSLFIFQNKLTNLKKNKKGIPLKCIFIDQLELPPRTYNCLKRSNIHTLLDL 298
Query: 995 LNNSQEDLMRIEHLRIEDVKQILDILQKHFAIYLPKNKF 1111
L+NSQEDLMRIE+ R EDVKQILD LQKHFAI LPKNKF
Sbjct: 299 LSNSQEDLMRIEYFRTEDVKQILDTLQKHFAINLPKNKF 337