BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00013304
         (1604 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521336.1| protein with unknown function [Ricinus commu...   342   5e-91
ref|XP_010062697.1| PREDICTED: transcription initiation factor T...   316   3e-83
gb|KCW69820.1| hypothetical protein EUGRSUZ_F03174 [Eucalyptus g...   314   1e-82
gb|KCW69819.1| hypothetical protein EUGRSUZ_F03174 [Eucalyptus g...   314   1e-82
ref|XP_011035712.1| PREDICTED: transcription initiation factor T...   261   1e-66
ref|XP_011035709.1| PREDICTED: transcription initiation factor T...   261   1e-66
ref|XP_010256795.1| PREDICTED: transcription initiation factor T...   260   2e-66
ref|XP_010256794.1| PREDICTED: transcription initiation factor T...   260   2e-66
ref|XP_012068890.1| PREDICTED: transcription initiation factor T...   253   3e-64
ref|XP_012068891.1| PREDICTED: transcription initiation factor T...   253   3e-64
gb|KJB68265.1| hypothetical protein B456_010G235100 [Gossypium r...   252   5e-64
gb|KJB68264.1| hypothetical protein B456_010G235100 [Gossypium r...   252   5e-64
ref|XP_012450307.1| PREDICTED: transcription initiation factor T...   252   5e-64
ref|XP_007024607.1| Transcription initiation factor TFIID subuni...   252   5e-64
ref|XP_007024609.1| Transcription initiation factor TFIID subuni...   251   1e-63
ref|XP_010105507.1| Transcription initiation factor TFIID subuni...   251   2e-63
ref|XP_011036418.1| PREDICTED: transcription initiation factor T...   251   2e-63
ref|XP_002304140.1| transcription initiation factor IID subunit ...   249   4e-63
ref|XP_007024610.1| Transcription initiation factor TFIID subuni...   246   3e-62
ref|XP_012450306.1| PREDICTED: transcription initiation factor T...   245   6e-62

>ref|XP_002521336.1| protein with unknown function [Ricinus communis]
            gi|223539414|gb|EEF41004.1| protein with unknown function
            [Ricinus communis]
          Length = 523

 Score =  342 bits (877), Expect = 5e-91
 Identities = 237/535 (44%), Positives = 282/535 (52%), Gaps = 33/535 (6%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA------GISGQMNFXXXXXXX 1410
            S +QI Q++QRS SM R+                           G+ GQ+NF       
Sbjct: 2    STYQISQTLQRSPSMSRLTQITQQQQQQQNQYGNVLRQQQQQQQQGLYGQVNFSGSGSIQ 61

Query: 1409 XXXXXXXXXXXXXXXXXXQAGQPGGHLPMLAGQGT--ATQFNLQSQLLAPQRQKTGLVQG 1236
                                GQ  GHLPML G G   A     Q  LLA  RQK GLVQG
Sbjct: 62   QNSHQNQQLSRSALL-----GQ-SGHLPMLTGAGAVAAAAAAAQLNLLASPRQKAGLVQG 115

Query: 1235 SQFIPTNSSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASL 1062
            +QF P +S GQPLQGMQ++GMM SL LTS  R NG LT+ QQ+ +NA   +QQL QQ  L
Sbjct: 116  TQFHPGSSPGQPLQGMQAMGMMGSLNLTSQLRPNGPLTFAQQR-LNAGQMRQQLAQQNPL 174

Query: 1061 TSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTP 882
            TS    Q   LSRTSSLA MNP LSGL+QN Q +MMQNSL             +  P +P
Sbjct: 175  TSS---QVPNLSRTSSLAFMNPQLSGLTQNAQPSMMQNSL--PQQQWLKQMTGMPGPASP 229

Query: 881  SYNXXXXXXXXXXXXXXXXXXXXHKNPMTMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 702
            S                      H+N MT+N                             
Sbjct: 230  SLRLQQRQSQVLLQQQLASSSQLHQNSMTLNPQQLSQLVQQQPAMTHQQLHQQQQQQQQQ 289

Query: 701  XXXXXXXXXXXQSPRMPGSTVQKSV----------------------SLTGSQPE-TNAX 591
                       Q  + P   +Q+ +                      SLTGSQP+ T + 
Sbjct: 290  QQQQQQQMQQMQQQQQPQQQLQQQLPLHQQQQQQSPMMQGPTGQKSLSLTGSQPDATASG 349

Query: 590  XXXXXXXXXXXTEASNQLLGKRKIHDLVTQVDSQGKLDPEVEDLLLGIADDFIDSVTTFA 411
                       TEA+NQLLGKRKI DLV+QVDSQGK+DPEVE+LLL IADDFID+VT FA
Sbjct: 350  TTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKVDPEVEELLLEIADDFIDNVTMFA 409

Query: 410  CSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTSEEQKNQRKLSSSDVHMKRLKMVQALM 231
            CSLAKHRKSSTLESKDLLLHLEKNWHLTIPGF++EE+  QRK  SSD+H KRL M++AL 
Sbjct: 410  CSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFSTEERNLQRKPLSSDLHKKRLDMIRALR 469

Query: 230  ESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSPSSEQLVSPTIGSPMLQKIPRF 66
            E SHSE + +N R++ RQG  N V  +H +R SPSSEQLVS +  S MLQ+I RF
Sbjct: 470  EPSHSETN-NNPREMIRQGLGNPVVTNHLIRSSPSSEQLVSQSTSSQMLQQITRF 523


>ref|XP_010062697.1| PREDICTED: transcription initiation factor TFIID subunit 12b
            [Eucalyptus grandis]
          Length = 620

 Score =  316 bits (810), Expect = 3e-83
 Identities = 216/515 (41%), Positives = 266/515 (51%), Gaps = 13/515 (2%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA--GISGQMNFXXXXXXXXXXX 1398
            +NFQIQ  + R+ SM R+                       G+ GQ+NF           
Sbjct: 120  NNFQIQAGLPRTPSMSRLNQIQMGFMRQQQQQQQQQQQQQGGVYGQVNFGGSQQNQPQNQ 179

Query: 1397 XXXXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGLVQGSQFI 1224
                            GQ  GH+PML+G   A     NLQSQ+L   RQK GL+ GSQF 
Sbjct: 180  QNQMVTGNLPRSGLM-GQ-SGHMPMLSGTAAAAAAHMNLQSQMLNSPRQKAGLISGSQFH 237

Query: 1223 PTNSSGQPLQGMQSIGMMNSLGLTS--RANGS-LTYVQQQHINAAMRQQQLFQQASLTSP 1053
              N SGQ LQG+Q++G M S  L+S  R NG+ L+Y   +     MRQQ           
Sbjct: 238  SGNLSGQSLQGLQAMGSMGSYNLSSPLRVNGAALSYGPTRMTTGQMRQQL---------S 288

Query: 1052 QKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPSYN 873
            Q  Q Q L RTSSL  MN  +SGL+Q GQSAMM N+LS          P    PG+PS+ 
Sbjct: 289  QSPQVQNLQRTSSLF-MNSPISGLTQGGQSAMMPNNLSQQQWLKQM--PISGGPGSPSFR 345

Query: 872  XXXXXXXXXXXXXXXXXXXXHKNPMTMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 693
                                 +NPM  N                                
Sbjct: 346  LQQRQQQALLQQQLASSPQFSQNPMAPNLQQLSQLVQQSSMGHPQPHQQQQQQQQQQQQL 405

Query: 692  XXXXXXXXQ------SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXTEASNQLLG 531
                    Q      SPRM G   QKS+SLTGSQP+  A            TEA+NQLLG
Sbjct: 406  QQQQMHPQQQQQQQPSPRMLGPAGQKSLSLTGSQPDATASGTTQGGSSSQGTEATNQLLG 465

Query: 530  KRKIHDLVTQVDSQGKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLH 351
            KRKI DLV+QVD QG LDP VEDLLL  ADDFID VTTFACSLAKHRKSSTLESKD+LLH
Sbjct: 466  KRKIQDLVSQVDPQGVLDPNVEDLLLEFADDFIDQVTTFACSLAKHRKSSTLESKDVLLH 525

Query: 350  LEKNWHLTIPGFTSEEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGF 171
            LEKNW LTIPGF+SE QK+ +K  +S+ H KRL MV+AL +S+ +E  +  +++++RQG 
Sbjct: 526  LEKNWGLTIPGFSSEGQKHLKKPLASEFHKKRLDMVRALRDSTFTERSSDISKEITRQGS 585

Query: 170  SNSVAVDHSVRPSPSSEQLVSPTIGSPMLQKIPRF 66
             N +  +H +RPSPSS+ LV+   GS MLQ++ RF
Sbjct: 586  DNIIGPNHLIRPSPSSDHLVTQATGSQMLQQLTRF 620


>gb|KCW69820.1| hypothetical protein EUGRSUZ_F03174 [Eucalyptus grandis]
          Length = 476

 Score =  314 bits (805), Expect = 1e-82
 Identities = 200/435 (45%), Positives = 244/435 (56%), Gaps = 11/435 (2%)
 Frame = -1

Query: 1337 GHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGLVQGSQFIPTNSSGQPLQGMQSIGMMNS 1164
            GH+PML+G   A     NLQSQ+L   RQK GL+ GSQF   N SGQ LQG+Q++G M S
Sbjct: 54   GHMPMLSGTAAAAAAHMNLQSQMLNSPRQKAGLISGSQFHSGNLSGQSLQGLQAMGSMGS 113

Query: 1163 LGLTS--RANGS-LTYVQQQHINAAMRQQQLFQQASLTSPQKLQAQGLSRTSSLASMNPT 993
              L+S  R NG+ L+Y   +     MRQQ           Q  Q Q L RTSSL  MN  
Sbjct: 114  YNLSSPLRVNGAALSYGPTRMTTGQMRQQL---------SQSPQVQNLQRTSSLF-MNSP 163

Query: 992  LSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPSYNXXXXXXXXXXXXXXXXXXXX 813
            +SGL+Q GQSAMM N+LS          P    PG+PS+                     
Sbjct: 164  ISGLTQGGQSAMMPNNLSQQQWLKQM--PISGGPGSPSFRLQQRQQQALLQQQLASSPQF 221

Query: 812  HKNPMTMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ------SPRMP 651
             +NPM  N                                        Q      SPRM 
Sbjct: 222  SQNPMAPNLQQLSQLVQQSSMGHPQPHQQQQQQQQQQQQLQQQQMHPQQQQQQQPSPRML 281

Query: 650  GSTVQKSVSLTGSQPETNAXXXXXXXXXXXXTEASNQLLGKRKIHDLVTQVDSQGKLDPE 471
            G   QKS+SLTGSQP+  A            TEA+NQLLGKRKI DLV+QVD QG LDP 
Sbjct: 282  GPAGQKSLSLTGSQPDATASGTTQGGSSSQGTEATNQLLGKRKIQDLVSQVDPQGVLDPN 341

Query: 470  VEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTSEEQKNQ 291
            VEDLLL  ADDFID VTTFACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+SE QK+ 
Sbjct: 342  VEDLLLEFADDFIDQVTTFACSLAKHRKSSTLESKDVLLHLEKNWGLTIPGFSSEGQKHL 401

Query: 290  RKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSPSSEQLV 111
            +K  +S+ H KRL MV+AL +S+ +E  +  +++++RQG  N +  +H +RPSPSS+ LV
Sbjct: 402  KKPLASEFHKKRLDMVRALRDSTFTERSSDISKEITRQGSDNIIGPNHLIRPSPSSDHLV 461

Query: 110  SPTIGSPMLQKIPRF 66
            +   GS MLQ++ RF
Sbjct: 462  TQATGSQMLQQLTRF 476


>gb|KCW69819.1| hypothetical protein EUGRSUZ_F03174 [Eucalyptus grandis]
          Length = 631

 Score =  314 bits (805), Expect = 1e-82
 Identities = 200/435 (45%), Positives = 244/435 (56%), Gaps = 11/435 (2%)
 Frame = -1

Query: 1337 GHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGLVQGSQFIPTNSSGQPLQGMQSIGMMNS 1164
            GH+PML+G   A     NLQSQ+L   RQK GL+ GSQF   N SGQ LQG+Q++G M S
Sbjct: 209  GHMPMLSGTAAAAAAHMNLQSQMLNSPRQKAGLISGSQFHSGNLSGQSLQGLQAMGSMGS 268

Query: 1163 LGLTS--RANGS-LTYVQQQHINAAMRQQQLFQQASLTSPQKLQAQGLSRTSSLASMNPT 993
              L+S  R NG+ L+Y   +     MRQQ           Q  Q Q L RTSSL  MN  
Sbjct: 269  YNLSSPLRVNGAALSYGPTRMTTGQMRQQL---------SQSPQVQNLQRTSSLF-MNSP 318

Query: 992  LSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPSYNXXXXXXXXXXXXXXXXXXXX 813
            +SGL+Q GQSAMM N+LS          P    PG+PS+                     
Sbjct: 319  ISGLTQGGQSAMMPNNLSQQQWLKQM--PISGGPGSPSFRLQQRQQQALLQQQLASSPQF 376

Query: 812  HKNPMTMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ------SPRMP 651
             +NPM  N                                        Q      SPRM 
Sbjct: 377  SQNPMAPNLQQLSQLVQQSSMGHPQPHQQQQQQQQQQQQLQQQQMHPQQQQQQQPSPRML 436

Query: 650  GSTVQKSVSLTGSQPETNAXXXXXXXXXXXXTEASNQLLGKRKIHDLVTQVDSQGKLDPE 471
            G   QKS+SLTGSQP+  A            TEA+NQLLGKRKI DLV+QVD QG LDP 
Sbjct: 437  GPAGQKSLSLTGSQPDATASGTTQGGSSSQGTEATNQLLGKRKIQDLVSQVDPQGVLDPN 496

Query: 470  VEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTSEEQKNQ 291
            VEDLLL  ADDFID VTTFACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+SE QK+ 
Sbjct: 497  VEDLLLEFADDFIDQVTTFACSLAKHRKSSTLESKDVLLHLEKNWGLTIPGFSSEGQKHL 556

Query: 290  RKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSPSSEQLV 111
            +K  +S+ H KRL MV+AL +S+ +E  +  +++++RQG  N +  +H +RPSPSS+ LV
Sbjct: 557  KKPLASEFHKKRLDMVRALRDSTFTERSSDISKEITRQGSDNIIGPNHLIRPSPSSDHLV 616

Query: 110  SPTIGSPMLQKIPRF 66
            +   GS MLQ++ RF
Sbjct: 617  TQATGSQMLQQLTRF 631


>ref|XP_011035712.1| PREDICTED: transcription initiation factor TFIID subunit 12b-like
           isoform X2 [Populus euphratica]
          Length = 584

 Score =  261 bits (667), Expect = 1e-66
 Identities = 133/201 (66%), Positives = 159/201 (79%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665 SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
           SPRMPG T QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDS 
Sbjct: 384 SPRMPGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSH 443

Query: 488 GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
           GKLDP+VE+L L IADDFIDSVTTFACSLAKHRKSSTLESKD++LHLEKNWHLTIPGF++
Sbjct: 444 GKLDPDVEELFLEIADDFIDSVTTFACSLAKHRKSSTLESKDIMLHLEKNWHLTIPGFST 503

Query: 308 EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
           EEQK+Q++   SD+H KRL M++ALMESS SE +  N +++ RQG  N V  +H +RPSP
Sbjct: 504 EEQKHQKRPLPSDLHKKRLDMIRALMESSQSEGNNINPKEMLRQGLGNPVVTNHLIRPSP 563

Query: 128 SSEQLVSPTIGSPMLQKIPRF 66
           SSEQ+VS + GSPM+Q+I RF
Sbjct: 564 SSEQMVSQSTGSPMVQQITRF 584



 Score =  155 bits (391), Expect = 1e-34
 Identities = 102/214 (47%), Positives = 118/214 (55%), Gaps = 3/214 (1%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXAGISGQMNFXXXXXXXXXXXXX 1392
            S +QIQQ++QRS SM R+                     G+ GQMNF             
Sbjct: 83   SGYQIQQTLQRSPSMSRLSQINQQQPNQYGGVLRQQQQQGLYGQMNFGGSTSIQPNSQQN 142

Query: 1391 XXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT-QFNLQSQLLAPQRQKTGLVQGSQFIPTN 1215
                          GQ G HLPML G   A  Q NL SQLLA  RQK GLVQGSQF P N
Sbjct: 143  QQLVGVNPSRSALLGQTG-HLPMLTGTAAAAAQLNLPSQLLASPRQKAGLVQGSQFHPGN 201

Query: 1214 SSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASLTSPQKLQ 1041
            S GQ LQG+Q++G+M SL + S  R NG+LTY QQ+ INA   +QQL QQ  LTS    Q
Sbjct: 202  SPGQSLQGIQAMGVMGSLNMGSQIRPNGALTYAQQR-INAGSMRQQLVQQNPLTS----Q 256

Query: 1040 AQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLS 939
             Q L RT S+A MNP +SGL+QN Q  MMQNSLS
Sbjct: 257  VQSLQRTPSMAYMNPQMSGLAQNAQPTMMQNSLS 290


>ref|XP_011035709.1| PREDICTED: transcription initiation factor TFIID subunit 12b-like
           isoform X1 [Populus euphratica]
           gi|743878690|ref|XP_011035710.1| PREDICTED:
           transcription initiation factor TFIID subunit 12b-like
           isoform X1 [Populus euphratica]
           gi|743878698|ref|XP_011035711.1| PREDICTED:
           transcription initiation factor TFIID subunit 12b-like
           isoform X1 [Populus euphratica]
          Length = 597

 Score =  261 bits (667), Expect = 1e-66
 Identities = 133/201 (66%), Positives = 159/201 (79%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665 SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
           SPRMPG T QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDS 
Sbjct: 397 SPRMPGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSH 456

Query: 488 GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
           GKLDP+VE+L L IADDFIDSVTTFACSLAKHRKSSTLESKD++LHLEKNWHLTIPGF++
Sbjct: 457 GKLDPDVEELFLEIADDFIDSVTTFACSLAKHRKSSTLESKDIMLHLEKNWHLTIPGFST 516

Query: 308 EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
           EEQK+Q++   SD+H KRL M++ALMESS SE +  N +++ RQG  N V  +H +RPSP
Sbjct: 517 EEQKHQKRPLPSDLHKKRLDMIRALMESSQSEGNNINPKEMLRQGLGNPVVTNHLIRPSP 576

Query: 128 SSEQLVSPTIGSPMLQKIPRF 66
           SSEQ+VS + GSPM+Q+I RF
Sbjct: 577 SSEQMVSQSTGSPMVQQITRF 597



 Score =  155 bits (391), Expect = 1e-34
 Identities = 102/214 (47%), Positives = 118/214 (55%), Gaps = 3/214 (1%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXAGISGQMNFXXXXXXXXXXXXX 1392
            S +QIQQ++QRS SM R+                     G+ GQMNF             
Sbjct: 83   SGYQIQQTLQRSPSMSRLSQINQQQPNQYGGVLRQQQQQGLYGQMNFGGSTSIQPNSQQN 142

Query: 1391 XXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT-QFNLQSQLLAPQRQKTGLVQGSQFIPTN 1215
                          GQ G HLPML G   A  Q NL SQLLA  RQK GLVQGSQF P N
Sbjct: 143  QQLVGVNPSRSALLGQTG-HLPMLTGTAAAAAQLNLPSQLLASPRQKAGLVQGSQFHPGN 201

Query: 1214 SSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASLTSPQKLQ 1041
            S GQ LQG+Q++G+M SL + S  R NG+LTY QQ+ INA   +QQL QQ  LTS    Q
Sbjct: 202  SPGQSLQGIQAMGVMGSLNMGSQIRPNGALTYAQQR-INAGSMRQQLVQQNPLTS----Q 256

Query: 1040 AQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLS 939
             Q L RT S+A MNP +SGL+QN Q  MMQNSLS
Sbjct: 257  VQSLQRTPSMAYMNPQMSGLAQNAQPTMMQNSLS 290


>ref|XP_010256795.1| PREDICTED: transcription initiation factor TFIID subunit 12b isoform
            X2 [Nelumbo nucifera]
          Length = 641

 Score =  260 bits (665), Expect = 2e-66
 Identities = 137/201 (68%), Positives = 158/201 (78%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG  VQKS+SLTGSQP T A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 440  SPRMPGPAVQKSLSLTGSQPNTPASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 499

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHL IPG+TS
Sbjct: 500  GKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLKIPGYTS 559

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE K Q K  S D+H +RL M++ALMESSHS+ + ++A+D  RQ   N V V+H++R SP
Sbjct: 560  EEHKYQMKSLSGDLHNRRLGMIRALMESSHSQTNANSAKDTIRQAIGNPV-VNHTIRSSP 618

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSE LV+ +  SP+LQ++PRF
Sbjct: 619  SSEHLVAQSTSSPLLQQVPRF 639



 Score =  181 bits (459), Expect = 1e-42
 Identities = 114/219 (52%), Positives = 131/219 (59%), Gaps = 9/219 (4%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXAGISGQMNFXXXXXXXXXXXXX 1392
            SNFQIQQ++QRSTSM RM                     GI  QMNF             
Sbjct: 121  SNFQIQQNLQRSTSMSRMNPIQQQQYGAAAGAMRQQA--GIYSQMNFNGSHLQQQQQQQQ 178

Query: 1391 XXXXXXXXXXXXQ--AGQPGGHLPMLAGQGTAT-----QFNLQSQLLAPQRQKTGLVQGS 1233
                           + Q GGHLPML+GQ  A      QFNLQSQ+L+P RQKTGL+QGS
Sbjct: 179  QMGGGGLSRSALIGQSAQVGGHLPMLSGQAAAAAAAAAQFNLQSQILSPVRQKTGLIQGS 238

Query: 1232 QFIPTNSSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASLT 1059
            QF P N+ GQPLQGMQ+IGMM SLGL+   R N  L+YVQQQ     MRQQQL QQ SL+
Sbjct: 239  QFHPGNTPGQPLQGMQTIGMMGSLGLSGQLRGNRPLSYVQQQINQGQMRQQQLSQQTSLS 298

Query: 1058 SPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSL 942
            SP   QAQ L RTSSLAS+NP +SGL+QN Q +MMQNS+
Sbjct: 299  SP---QAQNLQRTSSLASLNPQMSGLAQNAQPSMMQNSM 334


>ref|XP_010256794.1| PREDICTED: transcription initiation factor TFIID subunit 12b isoform
            X1 [Nelumbo nucifera]
          Length = 644

 Score =  260 bits (665), Expect = 2e-66
 Identities = 137/201 (68%), Positives = 158/201 (78%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG  VQKS+SLTGSQP T A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 443  SPRMPGPAVQKSLSLTGSQPNTPASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 502

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHL IPG+TS
Sbjct: 503  GKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLKIPGYTS 562

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE K Q K  S D+H +RL M++ALMESSHS+ + ++A+D  RQ   N V V+H++R SP
Sbjct: 563  EEHKYQMKSLSGDLHNRRLGMIRALMESSHSQTNANSAKDTIRQAIGNPV-VNHTIRSSP 621

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSE LV+ +  SP+LQ++PRF
Sbjct: 622  SSEHLVAQSTSSPLLQQVPRF 642



 Score =  192 bits (487), Expect = 8e-46
 Identities = 117/219 (53%), Positives = 134/219 (61%), Gaps = 9/219 (4%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXAGISGQMNFXXXXXXXXXXXXX 1392
            SNFQIQQ++QRSTSM RM                     GI  QMNF             
Sbjct: 121  SNFQIQQNLQRSTSMSRMNPIQQQQYGAAAGAMRQQA--GIYSQMNFNGSHLQQQQQQQQ 178

Query: 1391 XXXXXXXXXXXXQ--AGQPGGHLPMLAGQGTAT-----QFNLQSQLLAPQRQKTGLVQGS 1233
                           + Q GGHLPML+GQ  A      QFNLQSQ+L+P RQKTGL+QGS
Sbjct: 179  QMGGGGLSRSALIGQSAQVGGHLPMLSGQAAAAAAAAAQFNLQSQILSPVRQKTGLIQGS 238

Query: 1232 QFIPTNSSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASLT 1059
            QF P N+ GQPLQGMQ+IGMM SLGL+   R N  L+YVQQQ     MRQQQL QQ SL+
Sbjct: 239  QFHPGNTPGQPLQGMQTIGMMGSLGLSGQLRGNRPLSYVQQQINQGQMRQQQLSQQTSLS 298

Query: 1058 SPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSL 942
            SPQKLQAQ L RTSSLAS+NP +SGL+QN Q +MMQNS+
Sbjct: 299  SPQKLQAQNLQRTSSLASLNPQMSGLAQNAQPSMMQNSM 337


>ref|XP_012068890.1| PREDICTED: transcription initiation factor TFIID subunit 12b isoform
            X1 [Jatropha curcas]
          Length = 636

 Score =  253 bits (646), Expect = 3e-64
 Identities = 136/201 (67%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRM G T QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 436  SPRMQGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 495

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNW LTIPGF++
Sbjct: 496  GKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWQLTIPGFST 555

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE+  QRK  SSD+H KRL M+ AL ESSH E +  N +++ RQG  N V  +H +R SP
Sbjct: 556  EERNFQRKPLSSDLHKKRLDMICALRESSHMETNNHNPKEMIRQGLGNPVVTNHLIRRSP 615

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS +  S MLQ+I RF
Sbjct: 616  SSEQLVSQSTSSQMLQQITRF 636



 Score =  137 bits (346), Expect = 2e-29
 Identities = 102/237 (43%), Positives = 122/237 (51%), Gaps = 6/237 (2%)
 Frame = -1

Query: 1568 NFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA--GISGQMNFXXXXXXXXXXXX 1395
            ++QI Q++QRS S+ R+                       G+ GQ+NF            
Sbjct: 117  SYQIPQTLQRSPSLSRLSQINQQQQQQNQYGSVLRQQQQQGLYGQVNFGGSGSIQQNLQQ 176

Query: 1394 XXXXXXXXXXXXXQAGQPG--GHLPMLAGQGTATQFNLQSQLLAPQRQKTGLVQGSQFIP 1221
                         ++   G  GHLP+L G   A     Q  LLA  RQK GLVQGSQF P
Sbjct: 177  NSQNQQMGGANLSRSALLGQNGHLPILPGPA-AVAAAAQLNLLASPRQKAGLVQGSQFHP 235

Query: 1220 TNSSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASLTSPQK 1047
              S GQPLQGMQ++G+M SL L+S  R N +L Y QQ+ INA   +QQL QQ SLTS   
Sbjct: 236  GTSPGQPLQGMQAMGVMGSLNLSSQLRPNSALAYAQQR-INAGQMRQQLAQQNSLTSS-- 292

Query: 1046 LQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPSY 876
             Q   LSRTSSLA MNP LSGL  N Q  MMQNSLS          PAIS P +PS+
Sbjct: 293  -QVPNLSRTSSLAFMNPQLSGLVPNAQPGMMQNSLS--QQQWLKQMPAISGPASPSF 346


>ref|XP_012068891.1| PREDICTED: transcription initiation factor TFIID subunit 12b isoform
            X2 [Jatropha curcas] gi|643733866|gb|KDP40709.1|
            hypothetical protein JCGZ_24708 [Jatropha curcas]
          Length = 633

 Score =  253 bits (646), Expect = 3e-64
 Identities = 136/201 (67%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRM G T QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 433  SPRMQGPTGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 492

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNW LTIPGF++
Sbjct: 493  GKLDPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWQLTIPGFST 552

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE+  QRK  SSD+H KRL M+ AL ESSH E +  N +++ RQG  N V  +H +R SP
Sbjct: 553  EERNFQRKPLSSDLHKKRLDMICALRESSHMETNNHNPKEMIRQGLGNPVVTNHLIRRSP 612

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS +  S MLQ+I RF
Sbjct: 613  SSEQLVSQSTSSQMLQQITRF 633



 Score =  129 bits (324), Expect = 7e-27
 Identities = 100/237 (42%), Positives = 120/237 (50%), Gaps = 6/237 (2%)
 Frame = -1

Query: 1568 NFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA--GISGQMNFXXXXXXXXXXXX 1395
            ++QI Q++QRS S+ R+                       G+ GQ+NF            
Sbjct: 117  SYQIPQTLQRSPSLSRLSQINQQQQQQNQYGSVLRQQQQQGLYGQVNFGGSGSIQQNLQQ 176

Query: 1394 XXXXXXXXXXXXXQAGQPG--GHLPMLAGQGTATQFNLQSQLLAPQRQKTGLVQGSQFIP 1221
                         ++   G  GHLP+L G   A     Q  LLA    K GLVQGSQF P
Sbjct: 177  NSQNQQMGGANLSRSALLGQNGHLPILPGPA-AVAAAAQLNLLA---SKAGLVQGSQFHP 232

Query: 1220 TNSSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQQQHINAAMRQQQLFQQASLTSPQK 1047
              S GQPLQGMQ++G+M SL L+S  R N +L Y QQ+ INA   +QQL QQ SLTS   
Sbjct: 233  GTSPGQPLQGMQAMGVMGSLNLSSQLRPNSALAYAQQR-INAGQMRQQLAQQNSLTSS-- 289

Query: 1046 LQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPSY 876
             Q   LSRTSSLA MNP LSGL  N Q  MMQNSLS          PAIS P +PS+
Sbjct: 290  -QVPNLSRTSSLAFMNPQLSGLVPNAQPGMMQNSLS--QQQWLKQMPAISGPASPSF 343


>gb|KJB68265.1| hypothetical protein B456_010G235100 [Gossypium raimondii]
          Length = 620

 Score =  252 bits (644), Expect = 5e-64
 Identities = 134/201 (66%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QK++SLTGSQP   A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 421  SPRMPGPAGQKTLSLTGSQPNATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 480

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+S
Sbjct: 481  GKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDILLHLEKNWRLTIPGFSS 540

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE +NQ +  SSD+H KRL+M++ALMESSH E + +N +++ RQG  N V  ++ +RPSP
Sbjct: 541  EE-RNQTRPLSSDLHKKRLEMIRALMESSHPEINANNPKEMIRQGLGNPVGANNLMRPSP 599

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS   GS MLQ+I R+
Sbjct: 600  SSEQLVSQAAGSQMLQQITRY 620



 Score =  138 bits (347), Expect = 1e-29
 Identities = 105/243 (43%), Positives = 122/243 (50%), Gaps = 11/243 (4%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA---------GISGQMNFXXXX 1419
            SNFQ+QQS+QRS S+ R+                              G+ GQMNF    
Sbjct: 111  SNFQMQQSLQRSPSISRINQLQQQQQQQQSQQQQQQQSQYGNVLRQQAGLYGQMNFGGSA 170

Query: 1418 XXXXXXXXXXXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGL 1245
                                   GQ  GHLPML G   A   Q+N QSQLLA    K GL
Sbjct: 171  SIQANQQQNQQMGNPNLSRSALIGQ-SGHLPMLGGAAAAAAAQYNYQSQLLA---SKAGL 226

Query: 1244 VQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQQAS 1065
            VQGSQF   N +GQ L GMQ++GMMN L    RANG+L Y QQQ +N    +QQL QQ  
Sbjct: 227  VQGSQFHAGNPTGQSLHGMQAMGMMN-LSSHLRANGAL-YAQQQ-MNQGQMRQQLSQQTQ 283

Query: 1064 LTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGT 885
            LTSPQ    Q L RTSS A +NP LSGL+QNGQ  MMQNSL           P+IS PG+
Sbjct: 284  LTSPQ---VQSLQRTSSQAFINPQLSGLAQNGQPGMMQNSL--LQQQLLKQIPSISGPGS 338

Query: 884  PSY 876
              +
Sbjct: 339  TPF 341


>gb|KJB68264.1| hypothetical protein B456_010G235100 [Gossypium raimondii]
          Length = 613

 Score =  252 bits (644), Expect = 5e-64
 Identities = 134/201 (66%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QK++SLTGSQP   A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 414  SPRMPGPAGQKTLSLTGSQPNATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 473

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+S
Sbjct: 474  GKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDILLHLEKNWRLTIPGFSS 533

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE +NQ +  SSD+H KRL+M++ALMESSH E + +N +++ RQG  N V  ++ +RPSP
Sbjct: 534  EE-RNQTRPLSSDLHKKRLEMIRALMESSHPEINANNPKEMIRQGLGNPVGANNLMRPSP 592

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS   GS MLQ+I R+
Sbjct: 593  SSEQLVSQAAGSQMLQQITRY 613



 Score =  133 bits (334), Expect = 5e-28
 Identities = 101/243 (41%), Positives = 118/243 (48%), Gaps = 11/243 (4%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA---------GISGQMNFXXXX 1419
            SNFQ+QQS+QRS S+ R+                              G+ GQMNF    
Sbjct: 111  SNFQMQQSLQRSPSISRINQLQQQQQQQQSQQQQQQQSQYGNVLRQQAGLYGQMNFGGSA 170

Query: 1418 XXXXXXXXXXXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGL 1245
                                   GQ  GHLPML G   A   Q+N QSQLLA  RQK GL
Sbjct: 171  SIQANQQQNQQMGNPNLSRSALIGQ-SGHLPMLGGAAAAAAAQYNYQSQLLASPRQKAGL 229

Query: 1244 VQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQQAS 1065
            VQGSQF   N +GQ L GMQ++GMMN L    RANG+L Y QQQ +N    +QQL QQ  
Sbjct: 230  VQGSQFHAGNPTGQSLHGMQAMGMMN-LSSHLRANGAL-YAQQQ-MNQGQMRQQLSQQTQ 286

Query: 1064 LTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGT 885
            LTSPQ             A +NP LSGL+QNGQ  MMQNSL           P+IS PG+
Sbjct: 287  LTSPQ-------------AFINPQLSGLAQNGQPGMMQNSL--LQQQLLKQIPSISGPGS 331

Query: 884  PSY 876
              +
Sbjct: 332  TPF 334


>ref|XP_012450307.1| PREDICTED: transcription initiation factor TFIID subunit 12b isoform
            X3 [Gossypium raimondii] gi|763801305|gb|KJB68260.1|
            hypothetical protein B456_010G235100 [Gossypium
            raimondii] gi|763801307|gb|KJB68262.1| hypothetical
            protein B456_010G235100 [Gossypium raimondii]
          Length = 623

 Score =  252 bits (644), Expect = 5e-64
 Identities = 134/201 (66%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QK++SLTGSQP   A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 424  SPRMPGPAGQKTLSLTGSQPNATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 483

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+S
Sbjct: 484  GKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDILLHLEKNWRLTIPGFSS 543

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE +NQ +  SSD+H KRL+M++ALMESSH E + +N +++ RQG  N V  ++ +RPSP
Sbjct: 544  EE-RNQTRPLSSDLHKKRLEMIRALMESSHPEINANNPKEMIRQGLGNPVGANNLMRPSP 602

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS   GS MLQ+I R+
Sbjct: 603  SSEQLVSQAAGSQMLQQITRY 623



 Score =  146 bits (369), Expect = 4e-32
 Identities = 107/243 (44%), Positives = 124/243 (51%), Gaps = 11/243 (4%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA---------GISGQMNFXXXX 1419
            SNFQ+QQS+QRS S+ R+                              G+ GQMNF    
Sbjct: 111  SNFQMQQSLQRSPSISRINQLQQQQQQQQSQQQQQQQSQYGNVLRQQAGLYGQMNFGGSA 170

Query: 1418 XXXXXXXXXXXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGL 1245
                                   GQ  GHLPML G   A   Q+N QSQLLA  RQK GL
Sbjct: 171  SIQANQQQNQQMGNPNLSRSALIGQ-SGHLPMLGGAAAAAAAQYNYQSQLLASPRQKAGL 229

Query: 1244 VQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQQAS 1065
            VQGSQF   N +GQ L GMQ++GMMN L    RANG+L Y QQQ +N    +QQL QQ  
Sbjct: 230  VQGSQFHAGNPTGQSLHGMQAMGMMN-LSSHLRANGAL-YAQQQ-MNQGQMRQQLSQQTQ 286

Query: 1064 LTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGT 885
            LTSP   Q Q L RTSS A +NP LSGL+QNGQ  MMQNSL           P+IS PG+
Sbjct: 287  LTSP---QVQSLQRTSSQAFINPQLSGLAQNGQPGMMQNSL--LQQQLLKQIPSISGPGS 341

Query: 884  PSY 876
              +
Sbjct: 342  TPF 344


>ref|XP_007024607.1| Transcription initiation factor TFIID subunit A isoform 1 [Theobroma
            cacao] gi|508779973|gb|EOY27229.1| Transcription
            initiation factor TFIID subunit A isoform 1 [Theobroma
            cacao]
          Length = 670

 Score =  252 bits (644), Expect = 5e-64
 Identities = 135/201 (67%), Positives = 155/201 (77%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 471  SPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 530

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNW LTIPGF+S
Sbjct: 531  GKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWRLTIPGFSS 590

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE +NQ +  SSD+H +RL M++ALMESS  E   +N +++ RQG  N V  +H +RPSP
Sbjct: 591  EE-RNQTRPLSSDLHKQRLDMIRALMESSQPETTANNPKEMIRQGLGNPVGANHLMRPSP 649

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS   GS MLQ+I R+
Sbjct: 650  SSEQLVSQAAGSQMLQQITRY 670



 Score =  146 bits (368), Expect = 5e-32
 Identities = 106/246 (43%), Positives = 126/246 (51%), Gaps = 14/246 (5%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA----------GISGQMNFXXX 1422
            SNFQIQQ++QRS S  R+                    +          G+ GQMNF   
Sbjct: 139  SNFQIQQTLQRSPSFSRLNPLQQQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGS 198

Query: 1421 XXXXXXXXXXXXXXXXXXXXXXQAGQPG--GHLPMLAGQGTAT--QFNLQSQLLAPQRQK 1254
                                  ++   G  GHLPML+G   A   Q +LQ QLLA  RQK
Sbjct: 199  ASIQANQQQNQQIQQISNPNLPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQK 258

Query: 1253 TGLVQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQ 1074
             GLVQGSQF P N +GQ LQGMQ++GMMN L    RANG+L    Q  IN    +QQL Q
Sbjct: 259  AGLVQGSQFHPGNPTGQSLQGMQAMGMMN-LSSQLRANGNL--YAQHRINQGQMRQQLSQ 315

Query: 1073 QASLTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISA 894
            Q  LTSP   Q Q L RTSS A +NP LSGL+Q+GQ  MMQNSL           P+IS 
Sbjct: 316  QTQLTSP---QVQSLPRTSSQAFINPQLSGLAQSGQPGMMQNSL--LQQQWLKQMPSISG 370

Query: 893  PGTPSY 876
            PG+PS+
Sbjct: 371  PGSPSF 376


>ref|XP_007024609.1| Transcription initiation factor TFIID subunit A isoform 3 [Theobroma
            cacao] gi|508779975|gb|EOY27231.1| Transcription
            initiation factor TFIID subunit A isoform 3 [Theobroma
            cacao]
          Length = 671

 Score =  251 bits (641), Expect = 1e-63
 Identities = 135/200 (67%), Positives = 154/200 (77%), Gaps = 1/200 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 471  SPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 530

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNW LTIPGF+S
Sbjct: 531  GKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWRLTIPGFSS 590

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE +NQ +  SSD+H +RL M++ALMESS  E   +N +++ RQG  N V  +H +RPSP
Sbjct: 591  EE-RNQTRPLSSDLHKQRLDMIRALMESSQPETTANNPKEMIRQGLGNPVGANHLMRPSP 649

Query: 128  SSEQLVSPTIGSPMLQKIPR 69
            SSEQLVS   GS MLQ+I R
Sbjct: 650  SSEQLVSQAAGSQMLQQITR 669



 Score =  146 bits (368), Expect = 5e-32
 Identities = 106/246 (43%), Positives = 126/246 (51%), Gaps = 14/246 (5%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA----------GISGQMNFXXX 1422
            SNFQIQQ++QRS S  R+                    +          G+ GQMNF   
Sbjct: 139  SNFQIQQTLQRSPSFSRLNPLQQQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGS 198

Query: 1421 XXXXXXXXXXXXXXXXXXXXXXQAGQPG--GHLPMLAGQGTAT--QFNLQSQLLAPQRQK 1254
                                  ++   G  GHLPML+G   A   Q +LQ QLLA  RQK
Sbjct: 199  ASIQANQQQNQQIQQISNPNLPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQK 258

Query: 1253 TGLVQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQ 1074
             GLVQGSQF P N +GQ LQGMQ++GMMN L    RANG+L    Q  IN    +QQL Q
Sbjct: 259  AGLVQGSQFHPGNPTGQSLQGMQAMGMMN-LSSQLRANGNL--YAQHRINQGQMRQQLSQ 315

Query: 1073 QASLTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISA 894
            Q  LTSP   Q Q L RTSS A +NP LSGL+Q+GQ  MMQNSL           P+IS 
Sbjct: 316  QTQLTSP---QVQSLPRTSSQAFINPQLSGLAQSGQPGMMQNSL--LQQQWLKQMPSISG 370

Query: 893  PGTPSY 876
            PG+PS+
Sbjct: 371  PGSPSF 376


>ref|XP_010105507.1| Transcription initiation factor TFIID subunit 12 [Morus notabilis]
            gi|587917384|gb|EXC04958.1| Transcription initiation
            factor TFIID subunit 12 [Morus notabilis]
          Length = 641

 Score =  251 bits (640), Expect = 2e-63
 Identities = 137/202 (67%), Positives = 157/202 (77%), Gaps = 2/202 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPR+ G + QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 442  SPRVHGPSGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 501

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVEDLLL IADDFIDSVT FACSLAKHRKSSTLESKDLLLHLEKNW LTIPGF  
Sbjct: 502  GKLDPEVEDLLLEIADDFIDSVTAFACSLAKHRKSSTLESKDLLLHLEKNWQLTIPGF-- 559

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARD-VSRQGFSNSVAVDHSVRPS 132
            EEQK+Q KL SSDVH KRL +V+ LMESS SE +T+N ++ +SRQG  N V  +H +RPS
Sbjct: 560  EEQKHQNKLLSSDVHKKRLDLVRTLMESSQSEANTANRKEMISRQGLGNPVGTNHVIRPS 619

Query: 131  PSSEQLVSPTIGSPMLQKIPRF 66
             SSEQL+S + GS MLQ++ RF
Sbjct: 620  LSSEQLISQSTGSQMLQQMTRF 641



 Score =  149 bits (376), Expect = 6e-33
 Identities = 111/261 (42%), Positives = 130/261 (49%), Gaps = 25/261 (9%)
 Frame = -1

Query: 1583 NLMSSNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA---GISGQMNFXXXXXX 1413
            NL  SN+Q+QQ +QRS SM RM                        G+ GQMNF      
Sbjct: 99   NLSMSNYQLQQCLQRSPSMSRMNQIQQQQQPQSPQHMGVNVMRQQAGLYGQMNFGGSPVI 158

Query: 1412 XXXXXXXXXXXXXXXXXXXQAGQ--------------------PGGHLPMLAGQGTATQF 1293
                               Q  Q                      GHLP+L+    A QF
Sbjct: 159  QQQSNQQPQQPQQQQNQQQQQQQNNQISAAAAAANLSRSALIGQSGHLPVLSS-AAAVQF 217

Query: 1292 NLQSQLLAPQRQKTGLVQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTS--RANGSLTYVQ 1119
            NLQ+QLL   R K  LVQGSQF P NS+GQ LQGMQ++GM   LGL+S  R+NG+L    
Sbjct: 218  NLQNQLLTSPRHKAALVQGSQFHPGNSAGQTLQGMQAMGM---LGLSSQIRSNGALASYA 274

Query: 1118 QQHINAAMRQQQLFQQASLTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLS 939
            QQ IN    +QQL QQ +L S    Q Q L RTSSLA +NP LSGLSQNGQ AMMQNSLS
Sbjct: 275  QQRINQGQLRQQLSQQNALNSS---QVQSLPRTSSLAYLNPQLSGLSQNGQPAMMQNSLS 331

Query: 938  XXXXXXXXXQPAISAPGTPSY 876
                      P+IS PG+PS+
Sbjct: 332  ---QQWLKQMPSISGPGSPSF 349


>ref|XP_011036418.1| PREDICTED: transcription initiation factor TFIID subunit 12b-like
            [Populus euphratica]
          Length = 611

 Score =  251 bits (640), Expect = 2e-63
 Identities = 131/201 (65%), Positives = 154/201 (76%), Gaps = 1/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QK++SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDS 
Sbjct: 411  SPRMPGPPGQKTLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSH 470

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVE+L L IADDFIDSVT FACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+S
Sbjct: 471  GKLDPEVEELFLEIADDFIDSVTAFACSLAKHRKSSTLESKDILLHLEKNWQLTIPGFSS 530

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE+K+Q K   SD+H KRL M++ALMESS SE +  + +++ RQG  N    +H +RPSP
Sbjct: 531  EERKHQSKPLPSDLHKKRLDMIRALMESSQSEENNISPKEMIRQGHGNPAVTNHLLRPSP 590

Query: 128  SSEQLVSPTIGSPMLQKIPRF 66
            SSEQLVS + GSPM+Q+I RF
Sbjct: 591  SSEQLVSQSTGSPMVQQITRF 611



 Score =  140 bits (353), Expect = 3e-30
 Identities = 102/235 (43%), Positives = 122/235 (51%), Gaps = 4/235 (1%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXAGISGQMNFXXXXXXXXXXXXX 1392
            S +QIQQ++QRS SM R+                     G+ GQMNF             
Sbjct: 99   SGYQIQQTLQRSPSMSRLTQIIQQQQNQYGGVLRQQQQ-GLYGQMNFGGSASIQQNSQQN 157

Query: 1391 XXXXXXXXXXXXQAGQPGGHLPMLAGQGTA---TQFNLQSQLLAPQRQKTGLVQGSQFIP 1221
                          GQ G HLPM  G   A   +Q NL SQLLA  RQK GL QGSQF  
Sbjct: 158  QQLSGSNLSRSALLGQTG-HLPMFTGAAAAAAASQLNLPSQLLASPRQKAGLAQGSQFHS 216

Query: 1220 TNSSGQPLQGMQSIGMMNSLGLTS-RANGSLTYVQQQHINAAMRQQQLFQQASLTSPQKL 1044
             +S GQ LQG+Q++G+M SL L+  R NG+L Y QQ+ ++A   +QQL QQ SLTS    
Sbjct: 217  GDSPGQSLQGIQAMGVMGSLNLSQLRPNGTLAYAQQR-MSAGSMRQQLVQQNSLTS---- 271

Query: 1043 QAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPS 879
            Q Q L RT SLA MN  LSGL QN Q AMMQ+SLS          P +S P +PS
Sbjct: 272  QVQSLQRTPSLAYMNHQLSGLVQNAQPAMMQSSLS--QQQWLKQMPTMSGPASPS 324


>ref|XP_002304140.1| transcription initiation factor IID subunit A family protein [Populus
            trichocarpa] gi|222841572|gb|EEE79119.1| transcription
            initiation factor IID subunit A family protein [Populus
            trichocarpa]
          Length = 655

 Score =  249 bits (636), Expect = 4e-63
 Identities = 130/198 (65%), Positives = 151/198 (76%), Gaps = 1/198 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QK++SLTGSQP+  A              EA+NQLLGKRKI DLV+QVDS 
Sbjct: 425  SPRMPGPPGQKTLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSH 484

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKLDPEVE+L L IADDFIDSVT FACSLAKHRKSSTLESKD+LLHLEKNWHLTIPGF+S
Sbjct: 485  GKLDPEVEELFLEIADDFIDSVTAFACSLAKHRKSSTLESKDILLHLEKNWHLTIPGFSS 544

Query: 308  EEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPSP 129
            EE+K+Q K   SD+H KRL M++ALMESS SE +  N +++ RQG  N    +H +RPSP
Sbjct: 545  EERKHQSKPLPSDLHKKRLDMIRALMESSQSEENNINPKEMIRQGHGNPAVTNHLIRPSP 604

Query: 128  SSEQLVSPTIGSPMLQKI 75
            SSEQLVS + GSPM  +I
Sbjct: 605  SSEQLVSQSTGSPMSAQI 622



 Score =  138 bits (347), Expect = 1e-29
 Identities = 100/236 (42%), Positives = 121/236 (51%), Gaps = 5/236 (2%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXAGISGQMNFXXXXXXXXXXXXX 1392
            S +QIQQ++QRS SM R                      G+ GQMNF             
Sbjct: 104  SGYQIQQTLQRSPSMSRSSQINQQQQNQYGGVLRQQQQQGLYGQMNFGGSASIQQNSQQN 163

Query: 1391 XXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT---QFNLQSQLLAPQRQKTGLVQGSQFIP 1221
                          GQ G HLPM  G   A    Q NL SQLLA  RQK GL QGSQF  
Sbjct: 164  QQLGGANLSRSALLGQTG-HLPMFTGAAAAAAAAQLNLPSQLLASPRQKAGLAQGSQFHS 222

Query: 1220 TNSSGQPLQGMQSIGMM-NSLGLTS-RANGSLTYVQQQHINAAMRQQQLFQQASLTSPQK 1047
             +S GQ LQG+Q++G+M +SL L+  R NG+L Y QQ+ ++A   +QQL QQ SLTS   
Sbjct: 223  GDSPGQSLQGIQAMGVMGSSLNLSQLRPNGALAYAQQR-MSAGSMRQQLVQQNSLTS--- 278

Query: 1046 LQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGTPS 879
             Q Q L RT SLA MN  +SGL+QN Q  MMQ+SLS          P +S P +PS
Sbjct: 279  -QVQSLQRTQSLAYMNHQMSGLAQNAQPTMMQSSLS--QQQWLKQMPTMSGPASPS 331


>ref|XP_007024610.1| Transcription initiation factor TFIID subunit A isoform 4 [Theobroma
            cacao] gi|508779976|gb|EOY27232.1| Transcription
            initiation factor TFIID subunit A isoform 4 [Theobroma
            cacao]
          Length = 672

 Score =  246 bits (629), Expect = 3e-62
 Identities = 135/201 (67%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQ-VDS 492
            SPRMPG   QKS+SLTGSQP+  A              EA+NQLLGKRKI DLV+Q VDS
Sbjct: 471  SPRMPGPAGQKSLSLTGSQPDATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQQVDS 530

Query: 491  QGKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFT 312
            QGKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNW LTIPGF+
Sbjct: 531  QGKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWRLTIPGFS 590

Query: 311  SEEQKNQRKLSSSDVHMKRLKMVQALMESSHSEPDTSNARDVSRQGFSNSVAVDHSVRPS 132
            SEE +NQ +  SSD+H +RL M++ALMESS  E   +N +++ RQG  N V  +H +RPS
Sbjct: 591  SEE-RNQTRPLSSDLHKQRLDMIRALMESSQPETTANNPKEMIRQGLGNPVGANHLMRPS 649

Query: 131  PSSEQLVSPTIGSPMLQKIPR 69
            PSSEQLVS   GS MLQ+I R
Sbjct: 650  PSSEQLVSQAAGSQMLQQITR 670



 Score =  146 bits (368), Expect = 5e-32
 Identities = 106/246 (43%), Positives = 126/246 (51%), Gaps = 14/246 (5%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA----------GISGQMNFXXX 1422
            SNFQIQQ++QRS S  R+                    +          G+ GQMNF   
Sbjct: 139  SNFQIQQTLQRSPSFSRLNPLQQQQQQQSQQQQQQQQQSQYGTVLRQQAGLYGQMNFGGS 198

Query: 1421 XXXXXXXXXXXXXXXXXXXXXXQAGQPG--GHLPMLAGQGTAT--QFNLQSQLLAPQRQK 1254
                                  ++   G  GHLPML+G   A   Q +LQ QLLA  RQK
Sbjct: 199  ASIQANQQQNQQIQQISNPNLPRSALIGQSGHLPMLSGAAAAAAAQLSLQPQLLASPRQK 258

Query: 1253 TGLVQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQ 1074
             GLVQGSQF P N +GQ LQGMQ++GMMN L    RANG+L    Q  IN    +QQL Q
Sbjct: 259  AGLVQGSQFHPGNPTGQSLQGMQAMGMMN-LSSQLRANGNL--YAQHRINQGQMRQQLSQ 315

Query: 1073 QASLTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISA 894
            Q  LTSP   Q Q L RTSS A +NP LSGL+Q+GQ  MMQNSL           P+IS 
Sbjct: 316  QTQLTSP---QVQSLPRTSSQAFINPQLSGLAQSGQPGMMQNSL--LQQQWLKQMPSISG 370

Query: 893  PGTPSY 876
            PG+PS+
Sbjct: 371  PGSPSF 376


>ref|XP_012450306.1| PREDICTED: transcription initiation factor TFIID subunit 12b isoform
            X2 [Gossypium raimondii]
          Length = 628

 Score =  245 bits (626), Expect = 6e-62
 Identities = 135/209 (64%), Positives = 157/209 (75%), Gaps = 9/209 (4%)
 Frame = -1

Query: 665  SPRMPGSTVQKSVSLTGSQPETNAXXXXXXXXXXXXT-EASNQLLGKRKIHDLVTQVDSQ 489
            SPRMPG   QK++SLTGSQP   A              EA+NQLLGKRKI DLV+QVDSQ
Sbjct: 421  SPRMPGPAGQKTLSLTGSQPNATASGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQ 480

Query: 488  GKLDPEVEDLLLGIADDFIDSVTTFACSLAKHRKSSTLESKDLLLHLEKNWHLTIPGFTS 309
            GKL+PEVEDLLL IADDFIDSVTTFACSLAKHRKSSTLESKD+LLHLEKNW LTIPGF+S
Sbjct: 481  GKLEPEVEDLLLEIADDFIDSVTTFACSLAKHRKSSTLESKDILLHLEKNWRLTIPGFSS 540

Query: 308  EEQKNQRKLSSSDVHMKRLKMV--------QALMESSHSEPDTSNARDVSRQGFSNSVAV 153
            EE +NQ +  SSD+H KRL+MV        +ALMESSH E + +N +++ RQG  N V  
Sbjct: 541  EE-RNQTRPLSSDLHKKRLEMVTEIFSTKIRALMESSHPEINANNPKEMIRQGLGNPVGA 599

Query: 152  DHSVRPSPSSEQLVSPTIGSPMLQKIPRF 66
            ++ +RPSPSSEQLVS   GS MLQ+I R+
Sbjct: 600  NNLMRPSPSSEQLVSQAAGSQMLQQITRY 628



 Score =  138 bits (347), Expect = 1e-29
 Identities = 105/243 (43%), Positives = 122/243 (50%), Gaps = 11/243 (4%)
 Frame = -1

Query: 1571 SNFQIQQSMQRSTSMPRMXXXXXXXXXXXXXXXXXXXXA---------GISGQMNFXXXX 1419
            SNFQ+QQS+QRS S+ R+                              G+ GQMNF    
Sbjct: 111  SNFQMQQSLQRSPSISRINQLQQQQQQQQSQQQQQQQSQYGNVLRQQAGLYGQMNFGGSA 170

Query: 1418 XXXXXXXXXXXXXXXXXXXXXQAGQPGGHLPMLAGQGTAT--QFNLQSQLLAPQRQKTGL 1245
                                   GQ  GHLPML G   A   Q+N QSQLLA    K GL
Sbjct: 171  SIQANQQQNQQMGNPNLSRSALIGQ-SGHLPMLGGAAAAAAAQYNYQSQLLA---SKAGL 226

Query: 1244 VQGSQFIPTNSSGQPLQGMQSIGMMNSLGLTSRANGSLTYVQQQHINAAMRQQQLFQQAS 1065
            VQGSQF   N +GQ L GMQ++GMMN L    RANG+L Y QQQ +N    +QQL QQ  
Sbjct: 227  VQGSQFHAGNPTGQSLHGMQAMGMMN-LSSHLRANGAL-YAQQQ-MNQGQMRQQLSQQTQ 283

Query: 1064 LTSPQKLQAQGLSRTSSLASMNPTLSGLSQNGQSAMMQNSLSXXXXXXXXXQPAISAPGT 885
            LTSPQ    Q L RTSS A +NP LSGL+QNGQ  MMQNSL           P+IS PG+
Sbjct: 284  LTSPQ---VQSLQRTSSQAFINPQLSGLAQNGQPGMMQNSL--LQQQLLKQIPSISGPGS 338

Query: 884  PSY 876
              +
Sbjct: 339  TPF 341