BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00013151
         (1130 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV su...   264   e-102
ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV su...   255   e-101
gb|AIO05698.1| putative DNA-directed RNA polymerase IV subunit 1...   267   1e-96
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   256   2e-96
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              256   2e-96
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   256   2e-95
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   256   2e-95
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   256   1e-93
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun...   258   1e-93
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   252   2e-93
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su...   241   2e-91
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su...   241   2e-91
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   248   4e-91
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   248   4e-91
ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV su...   255   4e-91
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su...   248   4e-91
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   248   4e-91
ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV su...   255   7e-91
emb|CDP09818.1| unnamed protein product [Coffea canephora]            238   9e-91
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su...   243   9e-91

>ref|XP_010919205.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
            guineensis]
          Length = 1569

 Score =  264 bits (675), Expect(2) = e-102
 Identities = 134/227 (59%), Positives = 161/227 (70%)
 Frame = -2

Query: 1078 LSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHSTDL 899
            +SQ +++ F++  YDLQNVI +Y S DNSMLAMI+AGSKG+  KL+QQ  CLGLQ  +  
Sbjct: 763  ISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPSSP 822

Query: 898  LPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPLECFFHALS 719
            LPF++P +LSC  WN QK S         +CA    SYAVV  SFLDGLNPLECF HA++
Sbjct: 823  LPFRIPRRLSCVSWNAQKKSEHGIPQDVVECAGGQNSYAVVKASFLDGLNPLECFVHAIT 882

Query: 718  SRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICDLDDK 539
             R N FSENA+LPG LTRKLMFYMRDL+ AYDGTVRS YG Q+VQFSY I       +  
Sbjct: 883  GRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGKSSGEEGD 942

Query: 538  SHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
            S   +GE   E++  GGQPVG W+ACAISEAAYGALD P++  E SP
Sbjct: 943  SCMTYGENDAENNSLGGQPVGSWAACAISEAAYGALDHPMNSLEASP 989



 Score =  138 bits (347), Expect(2) = e-102
 Identities = 69/135 (51%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V DCG+ ++S D+S S+FLS+ L++  YGFEY A+EVKNHL+RVL SD+VTT++I   
Sbjct: 994  KKVLDCGKTKASMDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTILIF-- 1051

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKM--NLPNLRIL 46
            +   DV GT+FSPW++HFH+ KERM  K+L  Q+I+D+LS  YN  +E +   LP L I 
Sbjct: 1052 YAGLDVQGTKFSPWITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTELPVLHIS 1111

Query: 45   SRICSSGDEQDENSE 1
            S+ CS  D Q+E+ E
Sbjct: 1112 SKDCSLIDIQNEHDE 1126


>ref|XP_008803255.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Phoenix
            dactylifera]
          Length = 1567

 Score =  255 bits (652), Expect(2) = e-101
 Identities = 131/227 (57%), Positives = 157/227 (69%)
 Frame = -2

Query: 1078 LSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHSTDL 899
            +SQ +I+ F++  YDLQNVI +Y S DNSMLAMI+AGSKG+  KL+QQ  CLGLQ     
Sbjct: 763  ISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPASP 822

Query: 898  LPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPLECFFHALS 719
            LPF++P +LSC   N QK           +C     SYAVV  SFLDGLNPLECF HA++
Sbjct: 823  LPFRIPRRLSCVSLNAQKKLEYGIPQDVVECVRGQNSYAVVKASFLDGLNPLECFVHAIT 882

Query: 718  SRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICDLDDK 539
             R N FSENA+LPG LTRKLMFYMRDL+ AYDGTVRS YG Q+VQFSY I  +       
Sbjct: 883  GRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESSSEQGD 942

Query: 538  SHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
            S    GE+  E++  GGQPVG W++CAISEAAYGALD P++  E SP
Sbjct: 943  SCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASP 989



 Score =  142 bits (358), Expect(2) = e-101
 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG+  +S D+S S+FLS+ L++  YGFEY A+EVKNHL+RVL SD+VTTV+I   
Sbjct: 994  KKVLECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIF-- 1051

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKM--NLPNLRIL 46
            +   DV GT+FSPW++HFH+ KERM  K+L VQ+I+D+LS  YN  +E +   LP LRI 
Sbjct: 1052 YAGLDVQGTKFSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRIT 1111

Query: 45   SRICSSGDEQDENSE 1
            S+ CS  D Q+E+ E
Sbjct: 1112 SKDCSLIDIQNEHDE 1126


>gb|AIO05698.1| putative DNA-directed RNA polymerase IV subunit 1, partial [Cocos
            nucifera]
          Length = 568

 Score =  267 bits (683), Expect(2) = 1e-96
 Identities = 133/227 (58%), Positives = 161/227 (70%)
 Frame = -2

Query: 1078 LSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHSTDL 899
            +S  +I+ F++  YDLQNVI RY S DNSMLAMI+AGSKG+  KL+QQ  CLGLQ  +  
Sbjct: 242  ISPFSIAAFRDVFYDLQNVIHRYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQLPSSP 301

Query: 898  LPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPLECFFHALS 719
            LPF++P +LSC  WN QK S         +C     SYAVV  SFLDGLNPLECF HA++
Sbjct: 302  LPFRIPQRLSCVSWNAQKKSEYGVPQDVVECVRGQNSYAVVKASFLDGLNPLECFVHAIT 361

Query: 718  SRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICDLDDK 539
             R N FSENA+LPG LTRKLMF+MRDL+ AYDGT+RS YG Q+VQFSY I  +    +  
Sbjct: 362  GRSNMFSENAELPGMLTRKLMFFMRDLYAAYDGTIRSTYGQQLVQFSYNIPGESFSEEGD 421

Query: 538  SHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
            S   +GE+  E +G GGQPVG W+ACAISEAAYGALD P++  E SP
Sbjct: 422  SCMMYGEKDAEDNGLGGQPVGSWAACAISEAAYGALDHPMNSLEASP 468



 Score =  115 bits (287), Expect(2) = 1e-96
 Identities = 54/98 (55%), Positives = 73/98 (74%)
 Frame = -3

Query: 399 RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
           + V DCG+  +S D+S S+FLS+ L++  YGFEY A+EVKNHL+RVL SD+VTTV+I   
Sbjct: 473 KKVLDCGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIF-- 530

Query: 219 FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDE 106
           +   DV GT FSPW++HFH+ KERM  K L  Q+I+D+
Sbjct: 531 YAGLDVQGTRFSPWITHFHVSKERMMRKILRAQAIIDQ 568


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  256 bits (653), Expect(2) = 2e-96
 Identities = 134/243 (55%), Positives = 172/243 (70%)
 Frame = -2

Query: 1126 VPKASHTFDQNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMK 947
            VP     + +   +  L Q ++  FK+   D+QN++ +YA++DNS+LAM+ AGSKGN +K
Sbjct: 680  VPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLK 739

Query: 946  LLQQSTCLGLQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNS 767
            L+QQ  CLGLQHS   L F++P +LSCA WN+QK+  L +    ++ AE ++ YAVV NS
Sbjct: 740  LVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQND-TSEYAESYIPYAVVENS 798

Query: 766  FLDGLNPLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVV 587
            FL GLNPLECF H+++SR + FS+NADLPGTLTR+LMF+MRDL++AYDGTVR+AYGNQ+V
Sbjct: 799  FLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLV 858

Query: 586  QFSYGIAEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTE 407
            QFSY I       D        E T   D  GGQPVG  SACAISEAAY ALDQPIS+ E
Sbjct: 859  QFSYNIEHTSTPSDG-----INEDTCAYD-MGGQPVGSISACAISEAAYSALDQPISLLE 912

Query: 406  TSP 398
             SP
Sbjct: 913  PSP 915



 Score =  126 bits (316), Expect(2) = 2e-96
 Identities = 64/133 (48%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG ++S+ D++VSLFLS+KL +  +GFEY A+EVKNHLE++L SD+V+TVMI+  
Sbjct: 920  KRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-- 977

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAK--EKMNLPNLRIL 46
            F+  + S T FSPWV HFH+C+E  K + L   SI+D L  K N A+   K+NLP+L+I 
Sbjct: 978  FSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQIT 1037

Query: 45   SRICSSGDEQDEN 7
            S+ C    E++++
Sbjct: 1038 SKDCFVDMEKEDS 1050


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  256 bits (653), Expect(2) = 2e-96
 Identities = 134/243 (55%), Positives = 172/243 (70%)
 Frame = -2

Query: 1126 VPKASHTFDQNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMK 947
            VP     + +   +  L Q ++  FK+   D+QN++ +YA++DNS+LAM+ AGSKGN +K
Sbjct: 582  VPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLK 641

Query: 946  LLQQSTCLGLQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNS 767
            L+QQ  CLGLQHS   L F++P +LSCA WN+QK+  L +    ++ AE ++ YAVV NS
Sbjct: 642  LVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQND-TSEYAESYIPYAVVENS 700

Query: 766  FLDGLNPLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVV 587
            FL GLNPLECF H+++SR + FS+NADLPGTLTR+LMF+MRDL++AYDGTVR+AYGNQ+V
Sbjct: 701  FLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLV 760

Query: 586  QFSYGIAEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTE 407
            QFSY I       D        E T   D  GGQPVG  SACAISEAAY ALDQPIS+ E
Sbjct: 761  QFSYNIEHTSTPSDG-----INEDTCAYD-MGGQPVGSISACAISEAAYSALDQPISLLE 814

Query: 406  TSP 398
             SP
Sbjct: 815  PSP 817



 Score =  126 bits (316), Expect(2) = 2e-96
 Identities = 64/133 (48%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG ++S+ D++VSLFLS+KL +  +GFEY A+EVKNHLE++L SD+V+TVMI+  
Sbjct: 822  KRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-- 879

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAK--EKMNLPNLRIL 46
            F+  + S T FSPWV HFH+C+E  K + L   SI+D L  K N A+   K+NLP+L+I 
Sbjct: 880  FSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQIT 939

Query: 45   SRICSSGDEQDEN 7
            S+ C    E++++
Sbjct: 940  SKDCFVDMEKEDS 952


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  256 bits (653), Expect(2) = 2e-95
 Identities = 134/243 (55%), Positives = 172/243 (70%)
 Frame = -2

Query: 1126 VPKASHTFDQNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMK 947
            VP     + +   +  L Q ++  FK+   D+QN++ +YA++DNS+LAM+ AGSKGN +K
Sbjct: 680  VPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLK 739

Query: 946  LLQQSTCLGLQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNS 767
            L+QQ  CLGLQHS   L F++P +LSCA WN+QK+  L +    ++ AE ++ YAVV NS
Sbjct: 740  LVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQND-TSEYAESYIPYAVVENS 798

Query: 766  FLDGLNPLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVV 587
            FL GLNPLECF H+++SR + FS+NADLPGTLTR+LMF+MRDL++AYDGTVR+AYGNQ+V
Sbjct: 799  FLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLV 858

Query: 586  QFSYGIAEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTE 407
            QFSY I       D        E T   D  GGQPVG  SACAISEAAY ALDQPIS+ E
Sbjct: 859  QFSYNIEHTSTPSDG-----INEDTCAYD-MGGQPVGSISACAISEAAYSALDQPISLLE 912

Query: 406  TSP 398
             SP
Sbjct: 913  PSP 915



 Score =  122 bits (306), Expect(2) = 2e-95
 Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 4/135 (2%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG ++S+ D++VSLFLS+KL +  +GFEY A+EVKNHLE++L SD+V+TVMI+  
Sbjct: 920  KRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-- 977

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAK--EKMNLPNLRIL 46
            F+  + S T FSPWV HFH+C+E  K + L   SI+D L  K N A+   K+NLP+L+I 
Sbjct: 978  FSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQIT 1037

Query: 45   S--RICSSGDEQDEN 7
            S  R C    E++++
Sbjct: 1038 SNGRDCFVDMEKEDS 1052


>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
            vinifera]
          Length = 1354

 Score =  256 bits (653), Expect(2) = 2e-95
 Identities = 134/243 (55%), Positives = 172/243 (70%)
 Frame = -2

Query: 1126 VPKASHTFDQNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMK 947
            VP     + +   +  L Q ++  FK+   D+QN++ +YA++DNS+LAM+ AGSKGN +K
Sbjct: 574  VPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLK 633

Query: 946  LLQQSTCLGLQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNS 767
            L+QQ  CLGLQHS   L F++P +LSCA WN+QK+  L +    ++ AE ++ YAVV NS
Sbjct: 634  LVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQND-TSEYAESYIPYAVVENS 692

Query: 766  FLDGLNPLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVV 587
            FL GLNPLECF H+++SR + FS+NADLPGTLTR+LMF+MRDL++AYDGTVR+AYGNQ+V
Sbjct: 693  FLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLV 752

Query: 586  QFSYGIAEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTE 407
            QFSY I       D        E T   D  GGQPVG  SACAISEAAY ALDQPIS+ E
Sbjct: 753  QFSYNIEHTSTPSDG-----INEDTCAYD-MGGQPVGSISACAISEAAYSALDQPISLLE 806

Query: 406  TSP 398
             SP
Sbjct: 807  PSP 809



 Score =  122 bits (306), Expect(2) = 2e-95
 Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 4/135 (2%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG ++S+ D++VSLFLS+KL +  +GFEY A+EVKNHLE++L SD+V+TVMI+  
Sbjct: 814  KRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIV-- 871

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAK--EKMNLPNLRIL 46
            F+  + S T FSPWV HFH+C+E  K + L   SI+D L  K N A+   K+NLP+L+I 
Sbjct: 872  FSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQIT 931

Query: 45   S--RICSSGDEQDEN 7
            S  R C    E++++
Sbjct: 932  SNGRDCFVDMEKEDS 946


>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Prunus mume]
          Length = 1452

 Score =  256 bits (653), Expect(2) = 1e-93
 Identities = 132/241 (54%), Positives = 166/241 (68%), Gaps = 1/241 (0%)
 Frame = -2

Query: 1117 ASHTFDQNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQ 938
            A +   +   +  LSQV    FK    D+Q++  +YA +DNS+L M+ AGSKGN  KL+Q
Sbjct: 676  AEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQ 735

Query: 937  QSTCLGLQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDN-DCAERHVSYAVVWNSFL 761
             S CLGLQHS   L F++P++LSCA WN QK  +L +      +C E ++  AVV +SFL
Sbjct: 736  HSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVESSFL 795

Query: 760  DGLNPLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQF 581
             GLNPLECF H+++SR + FS NADLPGTLTRKLMF MRDL+ AYDGTVR+AYGNQ+VQF
Sbjct: 796  TGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLVQF 855

Query: 580  SYGIAEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETS 401
            SY I     D  D +   + + T   DG GGQPVG  SACA+SEAAY ALDQP+S+ ETS
Sbjct: 856  SYDID---MDKSDSTSTSYAKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLETS 912

Query: 400  P 398
            P
Sbjct: 913  P 913



 Score =  116 bits (291), Expect(2) = 1e-93
 Identities = 61/126 (48%), Positives = 88/126 (69%), Gaps = 2/126 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + + +CG K+SS  Q++SLFLSEKL R  +GFEY A+EVKNHL  +  SD+V+TVMII  
Sbjct: 918  KNILECGSKKSSAKQTMSLFLSEKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMII-- 975

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+  + S   FSPWV+HFH+CKE ++ ++L V S++D L  + N A+   K+ L +L I 
Sbjct: 976  FSSQNNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKVVLRSLLIT 1035

Query: 45   SRICSS 28
            S+ CS+
Sbjct: 1036 SKGCSA 1041


>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
            gi|462406650|gb|EMJ12114.1| hypothetical protein
            PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  258 bits (658), Expect(2) = 1e-93
 Identities = 134/241 (55%), Positives = 166/241 (68%), Gaps = 1/241 (0%)
 Frame = -2

Query: 1117 ASHTFDQNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQ 938
            A +   +   +  LSQV    FK    D+Q++  +YA +DNS+L M+ AGSKGN  KL+Q
Sbjct: 583  AEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSLLTMLKAGSKGNLQKLVQ 642

Query: 937  QSTCLGLQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDN-DCAERHVSYAVVWNSFL 761
             S CLGLQHS   L F++P++LSCA WN QK  +L +      +C E ++  AVV +SFL
Sbjct: 643  HSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTYECVESYIPSAVVKSSFL 702

Query: 760  DGLNPLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQF 581
             GLNPLECF H+++SR + FS NADLPGTLTRKLMF MRDL+ AYDGTVR+AYGNQ+VQF
Sbjct: 703  TGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYTAYDGTVRNAYGNQLVQF 762

Query: 580  SYGIAEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETS 401
            SY I  D  D    SH    + T   DG GGQPVG  SACA+SEAAY ALDQP+S+ ETS
Sbjct: 763  SYDIDMDKSDSTSTSH---AKSTTACDGIGGQPVGSLSACALSEAAYSALDQPVSLLETS 819

Query: 400  P 398
            P
Sbjct: 820  P 820



 Score =  114 bits (286), Expect(2) = 1e-93
 Identities = 60/126 (47%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + + +CG K+SS  Q++SLFLS+KL R  +GFEY A+EVKNHL  +  SD+V+TVMII  
Sbjct: 825  KNILECGSKKSSAKQTLSLFLSKKLGRRRHGFEYGALEVKNHLVGLTFSDIVSTVMII-- 882

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+    S   FSPWV+HFH+CKE ++ ++L V S++D L  + N A+   K+ L +L I 
Sbjct: 883  FSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARCNSARPELKIVLRSLLIT 942

Query: 45   SRICSS 28
            S+ CS+
Sbjct: 943  SKGCSA 948


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  252 bits (644), Expect(2) = 2e-93
 Identities = 125/231 (54%), Positives = 166/231 (71%), Gaps = 1/231 (0%)
 Frame = -2

Query: 1087 AVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHS 908
            +  LSQ ++ +FK+   D+QN++ +YA++DNS+L M  AGSKGN +KL+Q S CLGLQHS
Sbjct: 707  SAALSQASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHS 766

Query: 907  TDLLPFQMPDKLSCAHWNQQKISNLHRTTHDN-DCAERHVSYAVVWNSFLDGLNPLECFF 731
               L F+ P +LSCA WN QK   L +   D  + A+ ++ YAVV +SF+ GLNPLE F 
Sbjct: 767  LVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFV 826

Query: 730  HALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICD 551
            H+++SR + FS+NADLPGTL+R+LMF+MRDL+ AYDGTVR++YG+ VVQF Y I +D   
Sbjct: 827  HSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLVVQFCYDIDKDASS 886

Query: 550  LDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                +H    E +   +G GGQPVG  SACAISEAAY ALDQP+S+ ETSP
Sbjct: 887  PTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLETSP 937



 Score =  119 bits (298), Expect(2) = 2e-93
 Identities = 66/135 (48%), Positives = 90/135 (66%), Gaps = 4/135 (2%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG K S+ DQ+++LFLS KL R  +G EYAA+EVKNHLER+  SD+VTTV II  
Sbjct: 942  KRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIVTTVSII-- 999

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+        F+PWV HFH+CK+ MK ++L VQSI+D L      AK   K++LP+++I 
Sbjct: 1000 FSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSLHMHCTTAKTMWKISLPDMQIT 1059

Query: 45   S--RICSSGDEQDEN 7
            S  R CS  D  +E+
Sbjct: 1060 SNGRACSHIDMPNED 1074


>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
            gi|695047161|ref|XP_009411450.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Musa acuminata
            subsp. malaccensis] gi|695047163|ref|XP_009411451.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 1569

 Score =  241 bits (614), Expect(2) = 2e-91
 Identities = 126/237 (53%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
 Frame = -2

Query: 1093 SDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQ 914
            S+   +SQV+I+ FK   +DL + I ++ ++DNSML MI+AGSKG+ +KL+QQ  CLGLQ
Sbjct: 763  SERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQ 822

Query: 913  HSTDLLPFQMPDKLSCAHWNQQK-----ISNLHRTTHDNDCAERHVSYAVVWNSFLDGLN 749
                 LPF +P KL+C  WN  K     IS+  +++    C +   SYAV+  SFLDGLN
Sbjct: 823  LFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSS----CGQS--SYAVIGTSFLDGLN 876

Query: 748  PLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGI 569
            PLECF HA+  R N F+ENA+LPGTLTRKLMFYMRDL++AYDGTVRSAYG Q+V+FSY I
Sbjct: 877  PLECFVHAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSI 936

Query: 568  AEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
             ED  +  +    + G +  E  G GG+PVG W+AC+ISEAAYG+L+ P++  E SP
Sbjct: 937  LEDSTEGGESCVAYDG-KDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSP 992



 Score =  124 bits (311), Expect(2) = 2e-91
 Identities = 60/135 (44%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V DC +  +S + +  LFLS++L  W YG EY A+EVKNHLERV   +++ TVMI+  
Sbjct: 997  KMVLDCCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMIL-- 1054

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKMN--LPNLRIL 46
            +   DV GT FSPW+ HFH+ K++M  ++L VQ + +EL + YNC +E+MN  LP L  +
Sbjct: 1055 YDGHDVQGTNFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFV 1114

Query: 45   SRICSSGDEQDENSE 1
            S+ CSS  +  E+ +
Sbjct: 1115 SKNCSSAYKWKEHDD 1129


>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1562

 Score =  241 bits (614), Expect(2) = 2e-91
 Identities = 126/237 (53%), Positives = 166/237 (70%), Gaps = 5/237 (2%)
 Frame = -2

Query: 1093 SDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQ 914
            S+   +SQV+I+ FK   +DL + I ++ ++DNSML MI+AGSKG+ +KL+QQ  CLGLQ
Sbjct: 756  SERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQ 815

Query: 913  HSTDLLPFQMPDKLSCAHWNQQK-----ISNLHRTTHDNDCAERHVSYAVVWNSFLDGLN 749
                 LPF +P KL+C  WN  K     IS+  +++    C +   SYAV+  SFLDGLN
Sbjct: 816  LFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSS----CGQS--SYAVIGTSFLDGLN 869

Query: 748  PLECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGI 569
            PLECF HA+  R N F+ENA+LPGTLTRKLMFYMRDL++AYDGTVRSAYG Q+V+FSY I
Sbjct: 870  PLECFVHAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSI 929

Query: 568  AEDICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
             ED  +  +    + G +  E  G GG+PVG W+AC+ISEAAYG+L+ P++  E SP
Sbjct: 930  LEDSTEGGESCVAYDG-KDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSP 985



 Score =  124 bits (311), Expect(2) = 2e-91
 Identities = 60/135 (44%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V DC +  +S + +  LFLS++L  W YG EY A+EVKNHLERV   +++ TVMI+  
Sbjct: 990  KMVLDCCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMIL-- 1047

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKMN--LPNLRIL 46
            +   DV GT FSPW+ HFH+ K++M  ++L VQ + +EL + YNC +E+MN  LP L  +
Sbjct: 1048 YDGHDVQGTNFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFV 1107

Query: 45   SRICSSGDEQDENSE 1
            S+ CSS  +  E+ +
Sbjct: 1108 SKNCSSAYKWKEHDD 1122


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X1 [Gossypium raimondii]
            gi|763758424|gb|KJB25755.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
            gi|763758426|gb|KJB25757.1| hypothetical protein
            B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  248 bits (633), Expect(2) = 4e-91
 Identities = 125/231 (54%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
 Frame = -2

Query: 1087 AVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHS 908
            +  LSQ ++ +FK+   D+QN++ +YA++DNS+  M  AGSKGN +KL+Q S CLGLQHS
Sbjct: 707  SAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHS 766

Query: 907  TDLLPFQMPDKLSCAHWNQQKISNLHRTTHDND-CAERHVSYAVVWNSFLDGLNPLECFF 731
               L F+ P +LSCA WN QK   L +   D D  A++++ YAVV +SF+ GLNPLECF 
Sbjct: 767  LVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFV 826

Query: 730  HALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICD 551
            H++++R   FS+NADLPGTL+R+LMF+MRDL  AYDGTVR+AYG+QVVQF Y I +    
Sbjct: 827  HSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFS 886

Query: 550  LDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                  +   + +   DG GGQPVG  SACAISEAAY ALDQPIS+ E+SP
Sbjct: 887  PTSCPDKLVSQGSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSP 937



 Score =  115 bits (289), Expect(2) = 4e-91
 Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG K S+ DQ++SLFLS KL R  +G EY A+EVKNHLER++  D+V+TV II  
Sbjct: 942  KRVLECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSII-- 999

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+    S   FSPWV HFH+ K+ +  ++LTV SI+D L      AK   K+NLP++++ 
Sbjct: 1000 FSPQMSSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVT 1059

Query: 45   SRICSSGDEQDEN 7
            S+ CS  D ++E+
Sbjct: 1060 SKACSVIDMENED 1072


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  248 bits (633), Expect(2) = 4e-91
 Identities = 125/231 (54%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
 Frame = -2

Query: 1087 AVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHS 908
            +  LSQ ++ +FK+   D+QN++ +YA++DNS+  M  AGSKGN +KL+Q S CLGLQHS
Sbjct: 704  SAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHS 763

Query: 907  TDLLPFQMPDKLSCAHWNQQKISNLHRTTHDND-CAERHVSYAVVWNSFLDGLNPLECFF 731
               L F+ P +LSCA WN QK   L +   D D  A++++ YAVV +SF+ GLNPLECF 
Sbjct: 764  LVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFV 823

Query: 730  HALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICD 551
            H++++R   FS+NADLPGTL+R+LMF+MRDL  AYDGTVR+AYG+QVVQF Y I +    
Sbjct: 824  HSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFS 883

Query: 550  LDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                  +   + +   DG GGQPVG  SACAISEAAY ALDQPIS+ E+SP
Sbjct: 884  PTSCPDKLVSQGSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSP 934



 Score =  115 bits (289), Expect(2) = 4e-91
 Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG K S+ DQ++SLFLS KL R  +G EY A+EVKNHLER++  D+V+TV II  
Sbjct: 939  KRVLECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSII-- 996

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+    S   FSPWV HFH+ K+ +  ++LTV SI+D L      AK   K+NLP++++ 
Sbjct: 997  FSPQMSSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVT 1056

Query: 45   SRICSSGDEQDEN 7
            S+ CS  D ++E+
Sbjct: 1057 SKACSVIDMENED 1069


>ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Pyrus x
            bretschneideri] gi|694406181|ref|XP_009377913.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            [Pyrus x bretschneideri]
          Length = 1466

 Score =  255 bits (652), Expect(2) = 4e-91
 Identities = 133/235 (56%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
 Frame = -2

Query: 1099 QNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLG 920
            +   +  LSQV    FK+F  D+QN+  +YA  DNS++ M+ AGSKGN  KL+Q S CLG
Sbjct: 692  EKQKSAALSQVVHDAFKQFFRDIQNLAYKYAGTDNSLMNMLKAGSKGNMQKLVQHSMCLG 751

Query: 919  LQHSTDLLPFQMPDKLSCAHWNQQK-ISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPL 743
            LQ+S   L F++P++LSCA WN QK IS+  +    ++C E ++  AVV NSFL GLNPL
Sbjct: 752  LQNSLVPLSFRIPNQLSCAAWNNQKAISSDQKVEGSSECVESYIPSAVVENSFLTGLNPL 811

Query: 742  ECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAE 563
            ECF H+++SR + FS NADLPGTLTRKLMF+MRDL  AYDGTVR+AYGN+VVQFSY I+ 
Sbjct: 812  ECFIHSVTSRDSSFSGNADLPGTLTRKLMFFMRDLCTAYDGTVRNAYGNKVVQFSYDISS 871

Query: 562  DICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                  D +     E     DG GGQPVG  SACAISEAAY ALDQP+S+ ETSP
Sbjct: 872  -----PDSASTRDDESITACDGVGGQPVGSLSACAISEAAYSALDQPVSLLETSP 921



 Score =  108 bits (270), Expect(2) = 4e-91
 Identities = 57/125 (45%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + + +CG K+SS  Q++SL+LSEKL R  +GFEYAA+EVKN+LE +  SD+V+TV+II  
Sbjct: 926  KNILECGSKKSSAKQTMSLYLSEKLVRHRHGFEYAALEVKNYLEGLKFSDIVSTVLII-- 983

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKMN--LPNLRIL 46
            F+  + S   FSPWV+HFH+ KE ++ ++L + SI++ L  + N A+ ++   L +L I 
Sbjct: 984  FSSQNGSKKRFSPWVTHFHIGKEIVRRRRLKMHSIVNSLYARCNSARPELKAILRSLLIT 1043

Query: 45   SRICS 31
            S+ CS
Sbjct: 1044 SKDCS 1048


>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Gossypium raimondii]
          Length = 1340

 Score =  248 bits (633), Expect(2) = 4e-91
 Identities = 125/231 (54%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
 Frame = -2

Query: 1087 AVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHS 908
            +  LSQ ++ +FK+   D+QN++ +YA++DNS+  M  AGSKGN +KL+Q S CLGLQHS
Sbjct: 566  SAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHS 625

Query: 907  TDLLPFQMPDKLSCAHWNQQKISNLHRTTHDND-CAERHVSYAVVWNSFLDGLNPLECFF 731
               L F+ P +LSCA WN QK   L +   D D  A++++ YAVV +SF+ GLNPLECF 
Sbjct: 626  LVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFV 685

Query: 730  HALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICD 551
            H++++R   FS+NADLPGTL+R+LMF+MRDL  AYDGTVR+AYG+QVVQF Y I +    
Sbjct: 686  HSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFS 745

Query: 550  LDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                  +   + +   DG GGQPVG  SACAISEAAY ALDQPIS+ E+SP
Sbjct: 746  PTSCPDKLVSQGSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSP 796



 Score =  115 bits (289), Expect(2) = 4e-91
 Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG K S+ DQ++SLFLS KL R  +G EY A+EVKNHLER++  D+V+TV II  
Sbjct: 801  KRVLECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSII-- 858

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+    S   FSPWV HFH+ K+ +  ++LTV SI+D L      AK   K+NLP++++ 
Sbjct: 859  FSPQMSSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVT 918

Query: 45   SRICSSGDEQDEN 7
            S+ CS  D ++E+
Sbjct: 919  SKACSVIDMENED 931


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  248 bits (633), Expect(2) = 4e-91
 Identities = 125/231 (54%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
 Frame = -2

Query: 1087 AVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLGLQHS 908
            +  LSQ ++ +FK+   D+QN++ +YA++DNS+  M  AGSKGN +KL+Q S CLGLQHS
Sbjct: 707  SAALSQASVDSFKQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHS 766

Query: 907  TDLLPFQMPDKLSCAHWNQQKISNLHRTTHDND-CAERHVSYAVVWNSFLDGLNPLECFF 731
               L F+ P +LSCA WN QK   L +   D D  A++++ YAVV +SF+ GLNPLECF 
Sbjct: 767  LVPLSFRFPHQLSCAAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFV 826

Query: 730  HALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAEDICD 551
            H++++R   FS+NADLPGTL+R+LMF+MRDL  AYDGTVR+AYG+QVVQF Y I +    
Sbjct: 827  HSVTTRDTSFSDNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFS 886

Query: 550  LDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                  +   + +   DG GGQPVG  SACAISEAAY ALDQPIS+ E+SP
Sbjct: 887  PTSCPDKLVSQGSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSP 937



 Score =  115 bits (289), Expect(2) = 4e-91
 Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG K S+ DQ++SLFLS KL R  +G EY A+EVKNHLER++  D+V+TV II  
Sbjct: 942  KRVLECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSII-- 999

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+    S   FSPWV HFH+ K+ +  ++LTV SI+D L      AK   K+NLP++++ 
Sbjct: 1000 FSPQMSSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVT 1059

Query: 45   SRICSSGDEQDEN 7
            S+ CS  D ++E+
Sbjct: 1060 SKACSVIDMENED 1072


>ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Malus
            domestica]
          Length = 1287

 Score =  255 bits (652), Expect(2) = 7e-91
 Identities = 133/235 (56%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
 Frame = -2

Query: 1099 QNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLG 920
            +   +  LSQV    FK+F  D+QN+  +YA  DNS++ M+ AGSKGN  KL+Q S CLG
Sbjct: 671  EKQKSAALSQVVHDAFKQFFRDIQNLAYKYAGTDNSLMNMLKAGSKGNMQKLVQHSMCLG 730

Query: 919  LQHSTDLLPFQMPDKLSCAHWNQQK-ISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPL 743
            LQ+S   L F++P++LSCA WN QK IS+  +    ++C E ++  AVV NSFL GLNPL
Sbjct: 731  LQNSLVPLSFRIPNQLSCAAWNNQKAISSDQKVEGSSECVESYIPSAVVENSFLTGLNPL 790

Query: 742  ECFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAE 563
            ECF H+++SR + FS NADLPGTLTRKLMF+MRDL  AYDGTVR+AYGN+VVQFSY I+ 
Sbjct: 791  ECFIHSVTSRDSSFSGNADLPGTLTRKLMFFMRDLCTAYDGTVRNAYGNKVVQFSYDISS 850

Query: 562  DICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
                  D +     E     DG GGQPVG  SACAISEAAY ALDQP+S+ ETSP
Sbjct: 851  -----PDSASTGDDESITACDGVGGQPVGSLSACAISEAAYSALDQPVSLLETSP 900



 Score =  107 bits (268), Expect(2) = 7e-91
 Identities = 57/125 (45%), Positives = 87/125 (69%), Gaps = 2/125 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + + +CG K+SS  Q++SL+LSEKL R  +GFEYAA+EVKN+LE +  SD+V+TV+II  
Sbjct: 905  KNILECGSKKSSAKQTMSLYLSEKLGRHRHGFEYAALEVKNYLEGLKFSDIVSTVLII-- 962

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKMN--LPNLRIL 46
            F+  + S   FSPWV+HFH+ KE +  ++L + SI++ L  + N A+ ++   L +L I 
Sbjct: 963  FSSQNGSKKRFSPWVTHFHIGKEIVXRRRLKMHSIVNSLYARCNSARPELKAILRSLLIT 1022

Query: 45   SRICS 31
            S+ CS
Sbjct: 1023 SKDCS 1027


>emb|CDP09818.1| unnamed protein product [Coffea canephora]
          Length = 1511

 Score =  238 bits (607), Expect(2) = 9e-91
 Identities = 121/236 (51%), Positives = 167/236 (70%), Gaps = 2/236 (0%)
 Frame = -2

Query: 1099 QNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLG 920
            Q  ++ VLS+ ++S FK+   D+Q+++  Y S+DNS L+M+ AGSKGN +KL+Q S CLG
Sbjct: 729  QQQNSSVLSEASVSAFKQVFLDVQHLVYHYVSKDNSFLSMLMAGSKGNLLKLVQHSMCLG 788

Query: 919  LQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPLE 740
            LQHS   L F +P +LSCA WN  KIS +H +    D +  ++ +AV+ NSFL GLNP+E
Sbjct: 789  LQHSVVPLSFSIPHQLSCATWNYHKIS-VHESHGTLDHSGSYIPFAVIENSFLTGLNPME 847

Query: 739  CFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAED 560
            CF H+L++R + FS +AD+ GTLTRKLMF+MRDL + YDGTVR++YGNQ++QFSY   + 
Sbjct: 848  CFVHSLTTRDSSFSGHADVSGTLTRKLMFFMRDLSIGYDGTVRNSYGNQLIQFSYNSRDT 907

Query: 559  I--CDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
            +  C+ +D+S       T+ +   GG PVG  +ACAISEAAY ALD PIS  E+SP
Sbjct: 908  LTPCNCNDES----PSETISAYDVGGHPVGALAACAISEAAYSALDLPISALESSP 959



 Score =  124 bits (312), Expect(2) = 9e-91
 Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + + DCG K+SS D++ S+FL +KL R TYG EY A+EVK+HLER++L DVV++ MI  S
Sbjct: 964  KKILDCGVKKSSGDKTASIFLCKKLGRQTYGLEYGALEVKDHLERLMLEDVVSSSMI--S 1021

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKEKM--NLPNLRIL 46
            +++   S ++ SPW+ HFH+ KE +K K+L VQSI+D L+  +  AK K+  NLP+L+I 
Sbjct: 1022 YSKEKCSRSQISPWICHFHISKEIIKRKRLRVQSIIDALNMAWRSAKVKLKINLPDLQIT 1081

Query: 45   SRICSSGDEQDE 10
             + CS   +Q+E
Sbjct: 1082 GKACSLALKQNE 1093


>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Cucumis sativus] gi|778675671|ref|XP_011650448.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Cucumis sativus]
            gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
            gi|700200830|gb|KGN55963.1| hypothetical protein
            Csa_3G039340 [Cucumis sativus]
          Length = 1483

 Score =  243 bits (620), Expect(2) = 9e-91
 Identities = 122/234 (52%), Positives = 157/234 (67%)
 Frame = -2

Query: 1099 QNSDAVVLSQVAISTFKEFSYDLQNVIQRYASEDNSMLAMINAGSKGNSMKLLQQSTCLG 920
            +   +  L+Q ++  FK+   D+QN++ +Y+ +DNS+L M  AGSKGN MKL+Q S CLG
Sbjct: 714  EKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNLMKLVQHSMCLG 773

Query: 919  LQHSTDLLPFQMPDKLSCAHWNQQKISNLHRTTHDNDCAERHVSYAVVWNSFLDGLNPLE 740
            LQHS   L F +P KLSCA WN QK+    +     D  +  + YAVV NSFL GLNP E
Sbjct: 774  LQHSLVTLSFSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVENSFLSGLNPFE 833

Query: 739  CFFHALSSRGNFFSENADLPGTLTRKLMFYMRDLHVAYDGTVRSAYGNQVVQFSYGIAED 560
            CF H++++R + FS+NA++PGTLTRKL F MRD++ AYDGTVR+AYGNQ+VQF Y     
Sbjct: 834  CFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQLVQFCY----- 888

Query: 559  ICDLDDKSHEFFGERTLESDGPGGQPVGGWSACAISEAAYGALDQPISMTETSP 398
              D+D  + E   E      G GG PVG  +ACAISEAAY ALDQPIS+ E SP
Sbjct: 889  --DIDRPTSESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASP 940



 Score =  119 bits (299), Expect(2) = 9e-91
 Identities = 59/135 (43%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
 Frame = -3

Query: 399  RXVFDCGRKESSEDQSVSLFLSEKLRRWTYGFEYAAIEVKNHLERVLLSDVVTTVMIICS 220
            + V +CG K +S  Q+ SLFLSEKL + +YGFEY A+ VKNHLERV+  D+V++VMII  
Sbjct: 945  KRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMII-- 1002

Query: 219  FTEPDVSGTEFSPWVSHFHLCKERMKMKKLTVQSIMDELSRKYNCAKE--KMNLPNLRIL 46
            F+        FSPWV HFH+CKE +K ++L + S++  L+ + +  ++  +MNLP+L+I+
Sbjct: 1003 FSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMRCDSMRQEGRMNLPSLQII 1062

Query: 45   SRICSSGDEQDENSE 1
            ++ C   D   E+ +
Sbjct: 1063 TQDCPLADSLTEDGD 1077