BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00011250
         (257 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7YJY0.1|RPOC2_CALFG RecName: Full=DNA-directed RNA polymeras...    96   7e-23
ref|NP_862744.2| RNA polymerase beta'' subunit [Calycanthus flor...    96   7e-23
gb|ADK89853.1| RNA polymerase beta' subunit (chloroplast) [Crith...    96   1e-22
ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwang...    95   1e-22
ref|YP_009093790.1| RNA polymerase beta'' subunit (chloroplast) ...    94   2e-22
ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia ...    94   4e-22
gb|AEX94825.1| RNA polymerase beta' subunit (chloroplast) [Oziro...    93   4e-22
gb|AAZ03984.1| RNA polymerase beta'' chain [Yucca schidigera]          93   4e-22
gb|AEX94804.1| RNA polymerase beta' subunit (chloroplast) [Hosta...    93   4e-22
gb|AEX94801.1| RNA polymerase beta' subunit (chloroplast) [Anema...    93   4e-22
gb|AEX94837.1| RNA polymerase beta' subunit (chloroplast) [Andro...    93   4e-22
ref|YP_009045556.1| RNA polymerase betasubunit (chloroplast) [Cy...    93   4e-22
gb|AEX94814.1| RNA polymerase beta' subunit (chloroplast) [Aphyl...    93   5e-22
gb|AEP25209.1| RNA polymerase C2, partial (chloroplast) [Asterop...    93   5e-22
gb|AEX94824.1| RNA polymerase beta' subunit (chloroplast) [Ledeb...    91   6e-22
ref|YP_009000166.1| RNA polymerase beta' subunit (chloroplast) (...    92   6e-22
sp|Q589B8.1|RPOC2_SILLA RecName: Full=DNA-directed RNA polymeras...    92   6e-22
ref|YP_005089567.1| rpoC2 gene product (chloroplast) [Silene lat...    92   6e-22
ref|YP_009000086.1| RNA polymerase beta' subunit (chloroplast) (...    92   6e-22
gb|AEZ49481.1| RNA polymerase beta'' subunit, partial [Hesperalo...    94   8e-22

>sp|Q7YJY0.1|RPOC2_CALFG RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           (chloroplast) [Calycanthus floridus var. glaucus]
           gi|32399369|emb|CAD28711.1| RNA polymerase beta'
           subunit-2 [Calycanthus floridus var. glaucus]
          Length = 1377

 Score = 95.5 bits (236), Expect(2) = 7e-23
 Identities = 51/64 (79%), Positives = 55/64 (85%)
 Frame = +2

Query: 8   DLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRYI 187
           DLYV IESHD  H VNI  KS LLVQNDQYVESEQVIAEIRAGTS+F+  KVKEKVR++I
Sbjct: 387 DLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVIAEIRAGTSTFNL-KVKEKVRKHI 445

Query: 188 YSDS 199
           YSDS
Sbjct: 446 YSDS 449



 Score = 38.1 bits (87), Expect(2) = 7e-23
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 445 IYSDSEGEMHWSTDVYHAP 463


>ref|NP_862744.2| RNA polymerase beta'' subunit [Calycanthus floridus var. glaucus]
          Length = 1373

 Score = 95.5 bits (236), Expect(2) = 7e-23
 Identities = 51/64 (79%), Positives = 55/64 (85%)
 Frame = +2

Query: 8   DLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRYI 187
           DLYV IESHD  H VNI  KS LLVQNDQYVESEQVIAEIRAGTS+F+  KVKEKVR++I
Sbjct: 383 DLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVIAEIRAGTSTFNL-KVKEKVRKHI 441

Query: 188 YSDS 199
           YSDS
Sbjct: 442 YSDS 445



 Score = 38.1 bits (87), Expect(2) = 7e-23
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 441 IYSDSEGEMHWSTDVYHAP 459


>gb|ADK89853.1| RNA polymerase beta' subunit (chloroplast) [Crithmum maritimum]
          Length = 1391

 Score = 96.3 bits (238), Expect(2) = 1e-22
 Identities = 51/65 (78%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKS LLVQNDQYVESEQVIAEIRAGTS+F+F   KEKVR++
Sbjct: 387 IDLYVTIESEDTLHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTFNF---KEKVRKH 443

Query: 185 IYSDS 199
           IYSDS
Sbjct: 444 IYSDS 448



 Score = 37.0 bits (84), Expect(2) = 1e-22
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHW+TDVYHAP
Sbjct: 444 IYSDSEGEMHWNTDVYHAP 462


>ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwangsiensis]
           gi|302424170|gb|ADL39046.1| RNA polymerase beta' subunit
           [Magnolia kwangsiensis]
          Length = 1382

 Score = 95.1 bits (235), Expect(2) = 1e-22
 Identities = 51/65 (78%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKS LLVQNDQYVESEQVIAEIRAGTS+F+F   KEKVR++
Sbjct: 386 IDLYVTIESQDILHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTFNF---KEKVRKH 442

Query: 185 IYSDS 199
           IYSDS
Sbjct: 443 IYSDS 447



 Score = 38.1 bits (87), Expect(2) = 1e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSDSEGEMHWSTDVYHAP 461


>ref|YP_009093790.1| RNA polymerase beta'' subunit (chloroplast) [Luzuriaga radicans]
           gi|695277405|gb|AIT15982.1| RNA polymerase beta''
           subunit (chloroplast) [Luzuriaga radicans]
          Length = 1384

 Score = 94.0 bits (232), Expect(2) = 2e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIR+GTS+F F   KEKVR+Y
Sbjct: 384 IDLYVTIESRDIIHNVNIPPKSLILVQNDQYVESEQVIAEIRSGTSTFHF---KEKVRKY 440

Query: 185 IYSDS 199
           IYS+S
Sbjct: 441 IYSES 445



 Score = 38.1 bits (87), Expect(2) = 2e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 441 IYSESEGEMHWSTDVYHAP 459


>ref|YP_009115885.1| RNA polymerase beta'' subunit [Scrophularia takesimensis]
           gi|744673729|gb|AJD00714.1| RNA polymerase beta''
           subunit [Scrophularia takesimensis]
          Length = 1389

 Score = 94.0 bits (232), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D QH VNI P+S LLVQNDQYVESEQVIAEIRAGTS+ +F   KEKVR++
Sbjct: 387 IDLYVTIESEDIQHNVNIPPQSFLLVQNDQYVESEQVIAEIRAGTSTLNF---KEKVRKH 443

Query: 185 IYSDS 199
           IYSDS
Sbjct: 444 IYSDS 448



 Score = 37.4 bits (85), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  + GEMHWSTDVYHAP
Sbjct: 444 IYSDSDGEMHWSTDVYHAP 462


>gb|AEX94825.1| RNA polymerase beta' subunit (chloroplast) [Oziroe biflora]
          Length = 1386

 Score = 93.2 bits (230), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHNVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 38.1 bits (87), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSESEGEMHWSTDVYHAP 461


>gb|AAZ03984.1| RNA polymerase beta'' chain [Yucca schidigera]
          Length = 1384

 Score = 93.2 bits (230), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 38.1 bits (87), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSESEGEMHWSTDVYHAP 461


>gb|AEX94804.1| RNA polymerase beta' subunit (chloroplast) [Hosta ventricosa]
          Length = 1384

 Score = 93.2 bits (230), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 38.1 bits (87), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSESEGEMHWSTDVYHAP 461


>gb|AEX94801.1| RNA polymerase beta' subunit (chloroplast) [Anemarrhena
           asphodeloides]
          Length = 1384

 Score = 93.2 bits (230), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 38.1 bits (87), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSESEGEMHWSTDVYHAP 461


>gb|AEX94837.1| RNA polymerase beta' subunit (chloroplast) [Androstephium
           coeruleum]
          Length = 1382

 Score = 93.2 bits (230), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHNVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 38.1 bits (87), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSESEGEMHWSTDVYHAP 461


>ref|YP_009045556.1| RNA polymerase betasubunit (chloroplast) [Cypripedium macranthos]
           gi|578888856|gb|AHI16739.1| RNA polymerase betasubunit
           (chloroplast) (chloroplast) [Cypripedium macranthos]
          Length = 1380

 Score = 93.2 bits (230), Expect(2) = 4e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 382 IDLYVTIESRDIIHSVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 438

Query: 185 IYSDS 199
           IYS+S
Sbjct: 439 IYSES 443



 Score = 38.1 bits (87), Expect(2) = 4e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 439 IYSESEGEMHWSTDVYHAP 457


>gb|AEX94814.1| RNA polymerase beta' subunit (chloroplast) [Aphyllanthes
           monspeliensis]
          Length = 1387

 Score = 92.8 bits (229), Expect(2) = 5e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHSVNIPPKSLVLVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 38.1 bits (87), Expect(2) = 5e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 443 IYSESEGEMHWSTDVYHAP 461


>gb|AEP25209.1| RNA polymerase C2, partial (chloroplast) [Asteropeia micraster]
          Length = 1106

 Score = 92.8 bits (229), Expect(2) = 5e-22
 Identities = 50/65 (76%), Positives = 54/65 (83%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKS LLVQNDQYVESEQVIAEIRAG S+F+F   KEKVR++
Sbjct: 350 IDLYVTIESEDIIHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGASTFNF---KEKVRKH 406

Query: 185 IYSDS 199
           IYSDS
Sbjct: 407 IYSDS 411



 Score = 38.1 bits (87), Expect(2) = 5e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 407 IYSDSEGEMHWSTDVYHAP 425


>gb|AEX94824.1| RNA polymerase beta' subunit (chloroplast) [Ledebouria cordifolia]
          Length = 1382

 Score = 91.3 bits (225), Expect(2) = 6e-22
 Identities = 49/65 (75%), Positives = 54/65 (83%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAG S+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDIIHNVNIPPKSLILVQNDQYVESEQVIAEIRAGASTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 39.3 bits (90), Expect(2) = 6e-22
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  +QGEMHWSTDVYHAP
Sbjct: 443 IYSESQGEMHWSTDVYHAP 461


>ref|YP_009000166.1| RNA polymerase beta' subunit (chloroplast) (chloroplast) [Silene
           paradoxa] gi|555944255|gb|AGZ18156.1| RNA polymerase
           beta' subunit (chloroplast) [Silene paradoxa]
          Length = 1373

 Score = 92.4 bits (228), Expect(2) = 6e-22
 Identities = 49/65 (75%), Positives = 54/65 (83%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D+ H VNI PKS LLVQNDQYVESEQVIAEIRAG S+ +F   KEKVR++
Sbjct: 383 IDLYVTIESEDSLHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGASTLNF---KEKVRKH 439

Query: 185 IYSDS 199
           IYSDS
Sbjct: 440 IYSDS 444



 Score = 38.1 bits (87), Expect(2) = 6e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 440 IYSDSEGEMHWSTDVYHAP 458


>sp|Q589B8.1|RPOC2_SILLA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           (chloroplast) [Silene latifolia]
           gi|62149317|dbj|BAD93459.1| RNA polymerase beta chain
           [Silene latifolia]
          Length = 1373

 Score = 92.4 bits (228), Expect(2) = 6e-22
 Identities = 49/65 (75%), Positives = 54/65 (83%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D+ H VNI PKS LLVQNDQYVESEQVIAEIRAG S+ +F   KEKVR++
Sbjct: 383 IDLYVTIESEDSLHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGASTLNF---KEKVRKH 439

Query: 185 IYSDS 199
           IYSDS
Sbjct: 440 IYSDS 444



 Score = 38.1 bits (87), Expect(2) = 6e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 440 IYSDSEGEMHWSTDVYHAP 458


>ref|YP_005089567.1| rpoC2 gene product (chloroplast) [Silene latifolia]
           gi|329755511|gb|AEC04074.1| RNA polymerase beta' subunit
           (chloroplast) [Silene latifolia]
          Length = 1373

 Score = 92.4 bits (228), Expect(2) = 6e-22
 Identities = 49/65 (75%), Positives = 54/65 (83%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D+ H VNI PKS LLVQNDQYVESEQVIAEIRAG S+ +F   KEKVR++
Sbjct: 383 IDLYVTIESEDSLHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGASTLNF---KEKVRKH 439

Query: 185 IYSDS 199
           IYSDS
Sbjct: 440 IYSDS 444



 Score = 38.1 bits (87), Expect(2) = 6e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 440 IYSDSEGEMHWSTDVYHAP 458


>ref|YP_009000086.1| RNA polymerase beta' subunit (chloroplast) (chloroplast) [Silene
           chalcedonica] gi|555944174|gb|AGZ18076.1| RNA polymerase
           beta' subunit (chloroplast) [Silene chalcedonica]
          Length = 1369

 Score = 92.4 bits (228), Expect(2) = 6e-22
 Identities = 49/65 (75%), Positives = 54/65 (83%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D+ H VNI PKS LLVQNDQYVESEQVIAEIRAG S+ +F   KEKVR++
Sbjct: 383 IDLYVTIESEDSLHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGASTLNF---KEKVRKH 439

Query: 185 IYSDS 199
           IYSDS
Sbjct: 440 IYSDS 444



 Score = 38.1 bits (87), Expect(2) = 6e-22
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWSTDVYHAP
Sbjct: 440 IYSDSEGEMHWSTDVYHAP 458


>gb|AEZ49481.1| RNA polymerase beta'' subunit, partial [Hesperaloe parviflora]
          Length = 1384

 Score = 94.4 bits (233), Expect(2) = 8e-22
 Identities = 50/65 (76%), Positives = 55/65 (84%)
 Frame = +2

Query: 5   IDLYVPIESHDNQHYVNISPKSLLLVQNDQYVESEQVIAEIRAGTSSFSFNKVKEKVRRY 184
           IDLYV IES D  H VNI PKSL+LVQNDQYVESEQVIAEIRAGTS+F F   KEKVR++
Sbjct: 386 IDLYVTIESRDTIHSVNIPPKSLILVQNDQYVESEQVIAEIRAGTSTFHF---KEKVRKH 442

Query: 185 IYSDS 199
           IYS+S
Sbjct: 443 IYSES 447



 Score = 35.8 bits (81), Expect(2) = 8e-22
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 183 IFIPTQGEMHWSTDVYHAP 239
           I+  ++GEMHWS DVYHAP
Sbjct: 443 IYSESEGEMHWSIDVYHAP 461